TY - RPRT A1 - Brodeur, Abel A1 - Mikola, Derek A1 - Cook, Nikolai A1 - Brailey, Thomas A1 - Briggs, Ryan A1 - Gendre, Alexandra de A1 - Dupraz, Yannick A1 - Fiala, Lenka A1 - Gabani, Jacopo A1 - Gauriot, Romain A1 - Haddad, Joanne A1 - Lima, Goncalo A1 - Ankel-Peters, Jörg A1 - Dreber, Anna A1 - Campbell, Douglas A1 - Kattan, Lamis A1 - Fages, Diego Marino A1 - Mierisch, Fabian A1 - Sun, Pu A1 - Wright, Taylor A1 - Connolly, Marie A1 - Hoces de la Guardia, Fernando A1 - Johannesson, Magnus A1 - Miguel, Edward A1 - Vilhuber, Lars A1 - Abarca, Alejandro A1 - Acharya, Mahesh A1 - Adjisse, Sossou Simplice A1 - Akhtar, Ahwaz A1 - Lizardi, Eduardo Alberto Ramirez A1 - Albrecht, Sabina A1 - Andersen, Synve Nygaard A1 - Andlib, Zubaria A1 - Arrora, Falak A1 - Ash, Thomas A1 - Bacher, Etienne A1 - Bachler, Sebastian A1 - Bacon, Félix A1 - Bagues, Manuel A1 - Balogh, Timea A1 - Batmanov, Alisher A1 - Barschkett, Mara A1 - Basdil, B. Kaan A1 - Dower, Jaromneda A1 - Castek, Ondrej A1 - Caviglia-Harris, Jill A1 - Strand, Gabriella Chauca A1 - Chen, Shi A1 - Chzhen, Asya A1 - Chung, Jong A1 - Collins, Jason A1 - Coppock, Alexander A1 - Cordeau, Hugo A1 - Couillard, Ben A1 - Crechet, Jonathan A1 - Crippa, Lorenzo A1 - Cui, Jeanne A1 - Czymara, Christian A1 - Daarstad, Haley A1 - Dao, Danh Chi A1 - Dao, Dong A1 - Schmandt, Marco David A1 - Linde, Astrid de A1 - Melo, Lucas De A1 - Deer, Lachlan A1 - Vera, Micole De A1 - Dimitrova, Velichka A1 - Dollbaum, Jan Fabian A1 - Dollbaum, Jan Matti A1 - Donnelly, Michael A1 - Huynh, Luu Duc Toan A1 - Dumbalska, Tsvetomira A1 - Duncan, Jamie A1 - Duong, Kiet Tuan A1 - Duprey, Thibaut A1 - Dworschak, Christoph A1 - Ellingsrud, Sigmund A1 - Elminejad, Ali A1 - Eissa, Yasmine A1 - Erhart, Andrea A1 - Etingin-Frati, Giulian A1 - Fatemi-Pour, Elaheh A1 - Federice, Alexa A1 - Feld, Jan A1 - Fenig, Guidon A1 - Firouzjaeiangalougah, Mojtaba A1 - Fleisje, Erlend A1 - Fortier-Chouinard, Alexandre A1 - Engel, Julia Francesca A1 - Fries, Tilman A1 - Fortier, Reid A1 - Fréchet, Nadjim A1 - Galipeau, Thomas A1 - Gallegos, Sebastián A1 - Gangji, Areez A1 - Gao, Xiaoying A1 - Garnache, Cloé A1 - Gáspár, Attila A1 - Gavrilova, Evelina A1 - Ghosh, Arijit A1 - Gibney, Garreth A1 - Gibson, Grant A1 - Godager, Geir A1 - Goff, Leonard A1 - Gong, Da A1 - González, Javier A1 - Gretton, Jeremy A1 - Griffa, Cristina A1 - Grigoryeva, Idaliya A1 - Grtting, Maja A1 - Guntermann, Eric A1 - Guo, Jiaqi A1 - Gugushvili, Alexi A1 - Habibnia, Hooman A1 - Häffner, Sonja A1 - Hall, Jonathan D. A1 - Hammar, Olle A1 - Kordt, Amund Hanson A1 - Hashimoto, Barry A1 - Hartley, Jonathan S. A1 - Hausladen, Carina I. A1 - Havránek, Tomáš A1 - Hazen, Jacob A1 - He, Harry A1 - Hepplewhite, Matthew A1 - Herrera-Rodriguez, Mario A1 - Heuer, Felix A1 - Heyes, Anthony A1 - Ho, Anson T. Y. A1 - Holmes, Jonathan A1 - Holzknecht, Armando A1 - Hsu, Yu-Hsiang Dexter A1 - Hu, Shiang-Hung A1 - Huang, Yu-Shiuan A1 - Huebener, Mathias A1 - Huber, Christoph A1 - Huynh, Kim P. A1 - Irsova, Zuzana A1 - Isler, Ozan A1 - Jakobsson, Niklas A1 - Frith, Michael James A1 - Jananji, Raphaël A1 - Jayalath, Tharaka A. A1 - Jetter, Michael A1 - John, Jenny A1 - Forshaw, Rachel Joy A1 - Juan, Felipe A1 - Kadriu, Valon A1 - Karim, Sunny A1 - Kelly, Edmund A1 - Dang, Duy Khanh Hoang A1 - Khushboo, Tazia A1 - Kim, Jin A1 - Kjellsson, Gustav A1 - Kjelsrud, Anders A1 - Kotsadam, Andreas A1 - Korpershoek, Jori A1 - Krashinsky, Lewis A1 - Kundu, Suranjana A1 - Kustov, Alexander A1 - Lalayev, Nurlan A1 - Langlois, Audrée A1 - Laufer, Jill A1 - Lee-Whiting, Blake A1 - Leibing, Andreas A1 - Lenz, Gabriel A1 - Levin, Joel A1 - Li, Peng A1 - Li, Tongzhe A1 - Lin, Yuchen A1 - Listo, Ariel A1 - Liu, Dan A1 - Lu, Xuewen A1 - Lukmanova, Elvina A1 - Luscombe, Alex A1 - Lusher, Lester R. A1 - Lyu, Ke A1 - Ma, Hai A1 - Mäder, Nicolas A1 - Makate, Clifton A1 - Malmberg, Alice A1 - Maitra, Adit A1 - Mandas, Marco A1 - Marcus, Jan A1 - Margaryan, Shushanik A1 - Márk, Lili A1 - Martignano, Andres A1 - Marsh, Abigail A1 - Masetto, Isabella A1 - McCanny, Anthony A1 - McManus, Emma A1 - McWay, Ryan A1 - Metson, Lennard A1 - Kinge, Jonas Minet A1 - Mishra, Sumit A1 - Mohnen, Myra A1 - Möller, Jakob A1 - Montambeault, Rosalie A1 - Montpetit, Sébastien A1 - Morin, Louis-Philippe A1 - Morris, Todd A1 - Moser, Scott A1 - Motoki, Fabio A1 - Muehlenbachs, Lucija A1 - Musulan, Andreea A1 - Musumeci, Marco A1 - Nabin, Munirul A1 - Nchare, Karim A1 - Neubauer, Florian A1 - Nguyen, Quan M. P. A1 - Nguyen, Tuan A1 - Nguyen-Tien, Viet A1 - Niazi, Ali A1 - Nikolaishvili, Giorgi A1 - Nordstrom, Ardyn A1 - Nü, Patrick A1 - Odermatt, Angela A1 - Olson, Matt A1 - ien, Henning A1 - Ölkers, Tim A1 - Vert, Miquel Oliver i. A1 - Oral, Emre A1 - Oswald, Christian A1 - Ousman, Ali A1 - Özak, Ömer A1 - Pandey, Shubham A1 - Pavlov, Alexandre A1 - Pelli, Martino A1 - Penheiro, Romeo A1 - Park, RyuGyung A1 - Martel, Eva Pérez A1 - Petrovičová, Tereza A1 - Phan, Linh A1 - Prettyman, Alexa A1 - Procházka, Jakub A1 - Putri, Aqila A1 - Quandt, Julian A1 - Qiu, Kangyu A1 - Nguyen, Loan Quynh Thi A1 - Rahman, Andaleeb A1 - Rea, Carson H. A1 - Reiremo, Adam A1 - Renée, Laëtitia A1 - Richardson, Joseph A1 - Rivers, Nicholas A1 - Rodrigues, Bruno A1 - Roelofs, William A1 - Roemer, Tobias A1 - Rogeberg, Ole A1 - Rose, Julian A1 - Roskos-Ewoldsen, Andrew A1 - Rosmer, Paul A1 - Sabada, Barbara A1 - Saberian, Soodeh A1 - Salamanca, Nicolas A1 - Sator, Georg A1 - Sawyer, Antoine A1 - Scates, Daniel A1 - Schlüter, Elmar A1 - Sells, Cameron A1 - Sen, Sharmi A1 - Sethi, Ritika A1 - Shcherbiak, Anna A1 - Sogaolu, Moyosore A1 - Soosalu, Matt A1 - Srensen, Erik A1 - Sovani, Manali A1 - Spencer, Noah A1 - Staubli, Stefan A1 - Stans, Renske A1 - Stewart, Anya A1 - Stips, Felix A1 - Stockley, Kieran A1 - Strobel, Stephenson A1 - Struby, Ethan A1 - Tang, John A1 - Tanrisever, Idil A1 - Yang, Thomas Tao A1 - Tastan, Ipek A1 - Tatić, Dejan A1 - Tatlow, Benjamin A1 - Seuyong, Féraud Tchuisseu A1 - Thériault, Rémi A1 - Thivierge, Vincent A1 - Tian, Wenjie A1 - Toma, Filip-Mihai A1 - Totarelli, Maddalena A1 - Tran, Van-Anh A1 - Truong, Hung A1 - Tsoy, Nikita A1 - Tuzcuoglu, Kerem A1 - Ubfal, Diego A1 - Villalobos, Laura A1 - Walterskirchen, Julian A1 - Wang, Joseph Taoyi A1 - Wattal, Vasudha A1 - Webb, Matthew D. A1 - Weber, Bryan A1 - Weisser, Reinhard A1 - Weng, Wei-Chien A1 - Westheide, Christian A1 - White, Kimberly A1 - Winter, Jacob A1 - Wochner, Timo A1 - Woerman, Matt A1 - Wong, Jared A1 - Woodard, Ritchie A1 - Wroński, Marcin A1 - Yazbeck, Myra A1 - Yang, Gustav Chung A1 - Yap, Luther A1 - Yassin, Kareman A1 - Ye, Hao A1 - Yoon, Jin Young A1 - Yurris, Chris A1 - Zahra, Tahreen A1 - Zaneva, Mirela A1 - Zayat, Aline A1 - Zhang, Jonathan A1 - Zhao, Ziwei A1 - Yaolang, Zhong T1 - Mass reproducibility and replicability BT - a new hope T2 - I4R discussion paper series N2 - This study pushes our understanding of research reliability by reproducing and replicating claims from 110 papers in leading economic and political science journals. The analysis involves computational reproducibility checks and robustness assessments. It reveals several patterns. First, we uncover a high rate of fully computationally reproducible results (over 85%). Second, excluding minor issues like missing packages or broken pathways, we uncover coding errors for about 25% of studies, with some studies containing multiple errors. Third, we test the robustness of the results to 5,511 re-analyses. We find a robustness reproducibility of about 70%. Robustness reproducibility rates are relatively higher for re-analyses that introduce new data and lower for re-analyses that change the sample or the definition of the dependent variable. Fourth, 52% of re-analysis effect size estimates are smaller than the original published estimates and the average statistical significance of a re-analysis is 77% of the original. Lastly, we rely on six teams of researchers working independently to answer eight additional research questions on the determinants of robustness reproducibility. Most teams find a negative relationship between replicators' experience and reproducibility, while finding no relationship between reproducibility and the provision of intermediate or even raw data combined with the necessary cleaning codes. KW - conomics KW - open science KW - political science KW - replication KW - reproduction KW - research transparency Y1 - 2024 SN - 2752-1931 IS - 107 PB - Institute for Replication CY - Essen ER - TY - JOUR A1 - Schröder, Rolf A1 - Fürst, Dieter Oswald A1 - Klasen, Christian A1 - Reiman, Jens A1 - Herrmann, Harald A1 - VanDerVen, Peter F. M. T1 - The association of plectin with Z-discs is a prerequisite for the formation of the intermyofibrillar desmin cytoskeleton Y1 - 2000 ER - TY - JOUR A1 - Schröder, Rolf A1 - Warlo, Irene A1 - Herrmann, Harald A1 - VanDerVen, Peter F. M A1 - Klasen, Christian A1 - Blümke, Ingmar A1 - Mundegar, Rustam R. A1 - Fürst, Dieter Oswald A1 - Göbel, Hans H. A1 - Magin, Thomas T1 - Immunogold EM reveals a close association of plectin and the desmin cytoskeleton in human skeletal muscle Y1 - 1999 ER - TY - CHAP A1 - Schuh, Christian A1 - Prucker, Oswald A1 - Lomadze, Nino A1 - Kopyshev, Alexey A1 - Santer, Svetlana A1 - Ruehe, Juergen T1 - Nanogradient polymer brushes T2 - Abstracts of papers : joint conference / The Chemical Institute of Cananda, CIC, American Chemical Society, ACS Y1 - 2012 SN - 0065-7727 VL - 243 PB - American Chemical Society CY - Washington ER - TY - GEN A1 - Tötzke, Christian A1 - Kardjilov, Nikolay A1 - Manke, Ingo A1 - Oswald, Sascha T1 - Capturing 3D Water Flow in Rooted Soil by Ultra-fast Neutron Tomography N2 - Water infiltration in soil is not only affected by the inherent heterogeneities of soil, but even more by the interaction with plant roots and their water uptake. Neutron tomography is a unique non-invasive 3D tool to visualize plant root systems together with the soil water distribution in situ. So far, acquisition times in the range of hours have been the major limitation for imaging 3D water dynamics. Implementing an alternative acquisition procedure we boosted the speed of acquisition capturing an entire tomogram within 10 s. This allows, for the first time, tracking of a water front ascending in a rooted soil column upon infiltration of deuterated water time-resolved in 3D. Image quality and resolution could be sustained to a level allowing for capturing the root system in high detail. Good signal-to-noise ratio and contrast were the key to visualize dynamic changes in water content and to localize the root uptake. We demonstrated the ability of ultra-fast tomography to quantitatively image quick changes of water content in the rhizosphere and outlined the value of such imaging data for 3D water uptake modelling. The presented method paves the way for time-resolved studies of various 3D flow and transport phenomena in porous systems T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 385 Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-402237 ER - TY - JOUR A1 - Trauth, Nico A1 - Schmidt, Christian A1 - Vieweg, Michael A1 - Oswald, Sascha A1 - Fleckenstein, Jan H. T1 - Hydraulic controls of in-stream gravel bar hyporheic exchange and reactions JF - Water resources research N2 - Hyporheic exchange transports solutes into the subsurface where they can undergo biogeochemical transformations, affecting fluvial water quality and ecology. A three-dimensional numerical model of a natural in-stream gravel bar (20 m x 6 m) is presented. Multiple steady state streamflow is simulated with a computational fluid dynamics code that is sequentially coupled to a reactive transport groundwater model via the hydraulic head distribution at the streambed. Ambient groundwater flow is considered by scenarios of neutral, gaining, and losing conditions. The transformation of oxygen, nitrate, and dissolved organic carbon by aerobic respiration and denitrification in the hyporheic zone are modeled, as is the denitrification of groundwater-borne nitrate when mixed with stream-sourced carbon. In contrast to fully submerged structures, hyporheic exchange flux decreases with increasing stream discharge, due to decreasing hydraulic head gradients across the partially submerged structure. Hyporheic residence time distributions are skewed in the log-space with medians of up to 8 h and shift to symmetric distributions with increasing level of submergence. Solute turnover is mainly controlled by residence times and the extent of the hyporheic exchange flow, which defines the potential reaction area. Although streamflow is the primary driver of hyporheic exchange, its impact on hyporheic exchange flux, residence times, and solute turnover is small, as these quantities exponentially decrease under losing and gaining conditions. Hence, highest reaction potential exists under neutral conditions, when the capacity for denitrification in the partially submerged structure can be orders of magnitude higher than in fully submerged structures. KW - in-stream gravel bar KW - groundwater-surface water interaction KW - aerobic respiration KW - denitrification KW - computational fluid dynamics KW - reactive transport model Y1 - 2015 U6 - https://doi.org/10.1002/2014WR015857 SN - 0043-1397 SN - 1944-7973 VL - 51 IS - 4 SP - 2243 EP - 2263 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Tötzke, Christian A1 - Kardjilov, Nikolay A1 - Manke, Ingo A1 - Oswald, Sascha T1 - Capturing 3D Water Flow in Rooted Soil by Ultra-fast Neutron Tomography JF - Scientific reports N2 - Water infiltration in soil is not only affected by the inherent heterogeneities of soil, but even more by the interaction with plant roots and their water uptake. Neutron tomography is a unique non-invasive 3D tool to visualize plant root systems together with the soil water distribution in situ. So far, acquisition times in the range of hours have been the major limitation for imaging 3D water dynamics. Implementing an alternative acquisition procedure we boosted the speed of acquisition capturing an entire tomogram within 10 s. This allows, for the first time, tracking of a water front ascending in a rooted soil column upon infiltration of deuterated water time-resolved in 3D. Image quality and resolution could be sustained to a level allowing for capturing the root system in high detail. Good signal-to-noise ratio and contrast were the key to visualize dynamic changes in water content and to localize the root uptake. We demonstrated the ability of ultra-fast tomography to quantitatively image quick changes of water content in the rhizosphere and outlined the value of such imaging data for 3D water uptake modelling. The presented method paves the way for time-resolved studies of various 3D flow and transport phenomena in porous systems. Y1 - 2017 U6 - https://doi.org/10.1038/s41598-017-06046-w SN - 2045-2322 VL - 7 PB - Macmillan Publishers Limited CY - London ER - TY - JOUR A1 - Miegel, Konrad A1 - Gräff, Thomas A1 - Franck, Christian A1 - Salzmann, Thomas A1 - Bronstert, Axel A1 - Walther, Marc A1 - Oswald, Sascha T1 - Auswirkungen des Sturmhochwassers der Ostsee am 4./5. Januar 2017 auf das renaturierte Nieder- moor „Hütelmoor und Heiligensee“ an der deut- schen Ostseeküste BT - Effects of the January 4/5 2017 storm surge on a restored fen at the German Baltic Sea coast JF - Hydrologie und Wasserbewirtschaftung N2 - Entlang der Küstenniederung des Naturschutzgebietes „Hütelmoor und Heiligensee“, ca. 6 km nordöstlich von Rostock-Warnemünde gelegen, wird seit dem Jahr 2000 die Küstendüne nicht mehr instand gehalten. Im Rahmen der Renaturierung des Gebietes werden so grundsätzlich wieder Überflutungen bei Ostseehochwassern zugelassen, was bisher jedoch noch nicht eingetreten ist. Am 4./5. Januar 2017 ereignete sich ein Sturmhochwasser der Ostsee, mit einem Scheitelwasserstand in Warnemünde, der sich zwischen dem 10- und 20-jährlichen Hochwasserstand einordnet. Dennoch kam es bei diesem Ereignis nicht zum Dünendurchbruch und zur seeseitigen Überflutung, wohl aber zum binnenseitigen Einstrom von Salz- bzw. Brackwasser. Dieser erfolgte über den Graben, durch den das Gebiet normalerweise über die Warnow in die Ostsee entwässert. Durch das Einströmen über die Sohlschwelle, sonst Auslass des Gebietes, stiegen die Wasserstände und Salzkonzentrationen in der südwestlichen Hälfte der Niederung an. Mit zunehmender Entfernung zur Sohlschwelle waren diese Auswirkungen jedoch geringer spürbar. Dies gilt wegen der Retentionswirkung der Niederung mehr für den Wasserstand als für die Salzkonzentration. Während der Wasserstand durch den Einstau der Niederung und Überschwemmungen flächenhaft anstieg, breitete sich die Salzfront präferentiell in den ehemaligen Entwässerungsgräben, die trotz des Einstaus nach wie vor hydraulisch aktiv sind, eher linienhaft aus. Diese Interpretation beruht auf Messergebnissen von Wasserstand, elektrischer Leitfähigkeit und Wassertemperatur. N2 - Maintenance and repair of the coastal dunes of the conservation area, Hutelmoor und Heiligensee" have been ceased for renaturation purposes since the year 2000 to aid flooding of the area during high water levels of the Baltic Sea. On January 4th and 5th 2017, the Baltic Sea experienced a storm surge resulting in a water level in Warnemunde with a 10-to 20-year reoccurrence rate. Nevertheless, the event caused neither a dune failure nor a sea-sided flooding, but did result in an upstream inflow of salt and brackwater through the trench which normally drains the area into the Baltic Sea via the Warnow. Water levels and salinity concentrations rose in the south-western part of the area due to the influx via a ground sill, which normally acts as the outlet of the lowland. The effects within the lowland were less pronounced with increasing distance to the ground sill, which proved to be even more significant for the water levels than for salinities due to the retention capabilities of the area. While water levels increased extensively as a result of the flooding, the salinity front is presumed to have spread primarily along the former draining channels. This interpretation is based on monitoring data of the water level as well as the environmental tracers electrical conductivity and water temperature. KW - Baltic Sea KW - storm surge KW - coastal lowland KW - flooding KW - salinization KW - environmental tracer KW - process analysis KW - Ostsee KW - Sturmhochwasser KW - Küstenniederung KW - Überflutung KW - Versalzung KW - Umwelttracer KW - Prozessgeschehen Y1 - 2017 U6 - https://doi.org/10.5675/HyWa_2017,4_2 SN - 1439-1783 VL - 61 IS - 4 SP - 232 EP - 243 PB - Bundesanst. für Gewässerkunde CY - Koblenz ER - TY - JOUR A1 - Haber-Pohlmeier, Sabina A1 - Tötzke, Christian A1 - Lehmann, E. A1 - Kardjilov, Nikolay A1 - Pohlmeier, A. A1 - Oswald, Sascha T1 - Combination of magnetic resonance imaging and neutron computed tomography for three-dimensional rhizosphere imaging JF - Vadose zone journal N2 - Core Ideas 3D MRI relaxation time maps reflect water mobility in root, rhizosphere, and soil. 3D NCT water content maps of the same plant complement relaxation time maps. The relaxation time T1 decreases from soil to root, whereas water content increases. Parameters together indicate modification of rhizosphere pore space by gel phase. The zone of reduced T1 corresponds to the zone remaining dry after rewetting. In situ investigations of the rhizosphere require high‐resolution imaging techniques, which allow a look into the optically opaque soil compartment. We present the novel combination of magnetic resonance imaging (MRI) and neutron computed tomography (NCT) to achieve synergistic information such as water mobility in terms of three‐dimensional (3D) relaxation time maps and total water content maps. Besides a stationary MRI scanner for relaxation time mapping, we used a transportable MRI system on site in the NCT facility to capture rhizosphere properties before desiccation and after subsequent rewetting. First, we addressed two questions using water‐filled test capillaries between 0.1 and 5 mm: which root diameters can still be detected by both methods, and to what extent are defined interfaces blurred by these imaging techniques? Going to real root system architecture, we demonstrated the sensitivity of the transportable MRI device by co‐registration with NCT and additional validation using X‐ray computed tomography. Under saturated conditions, we observed for the rhizosphere in situ a zone with shorter T1 relaxation time across a distance of about 1 mm that was not caused by reduced water content, as proven by successive NCT measurements. We conclude that the effective pore size in the pore network had changed, induced by a gel phase. After rewetting, NCT images showed a dry zone persisting while the MRI intensity inside the root increased considerably, indicating water uptake from the surrounding bulk soil through the still hydrophobic rhizosphere. Overall, combining NCT and MRI allows a more detailed analysis of the rhizosphere's functioning. Y1 - 2019 U6 - https://doi.org/10.2136/vzj2018.09.0166 SN - 1539-1663 VL - 18 IS - 1 PB - Soil Science Society of America CY - Madison ER - TY - JOUR A1 - Tötzke, Christian A1 - Kardjilov, Nikolay A1 - Hilger, André A1 - Rudolph-Mohr, Nicole A1 - Manke, Ingo A1 - Oswald, Sascha T1 - Three-dimensional in vivo analysis of water uptake and translocation in maize roots by fast neutron tomography JF - Scientific Reports N2 - Root water uptake is an essential process for terrestrial plants that strongly affects the spatiotemporal distribution of water in vegetated soil. Fast neutron tomography is a recently established non-invasive imaging technique capable to capture the 3D architecture of root systems in situ and even allows for tracking of three-dimensional water flow in soil and roots. We present an in vivo analysis of local water uptake and transport by roots of soil-grown maize plants—for the first time measured in a three-dimensional time-resolved manner. Using deuterated water as tracer in infiltration experiments, we visualized soil imbibition, local root uptake, and tracked the transport of deuterated water throughout the fibrous root system for a day and night situation. This revealed significant differences in water transport between different root types. The primary root was the preferred water transport path in the 13-days-old plants while seminal roots of comparable size and length contributed little to plant water supply. The results underline the unique potential of fast neutron tomography to provide time-resolved 3D in vivo information on the water uptake and transport dynamics of plant root systems, thus contributing to a better understanding of the complex interactions of plant, soil and water. KW - Environmental sciences KW - Optics and photonics KW - Plant sciences Y1 - 2021 U6 - https://doi.org/10.1038/s41598-021-90062-4 SN - 2045-2322 VL - 11 PB - Macmillan Publishers Limited CY - London ER - TY - JOUR A1 - Francke, Till A1 - Heistermann, Maik A1 - Köhli, Markus A1 - Budach, Christian A1 - Schrön, Martin A1 - Oswald, Sascha T1 - Assessing the feasibility of a directional cosmic-ray neutron sensing sensor for estimating soil moisture JF - Geoscientific Instrumentation, Methods and Data Systems N2 - Cosmic-ray neutron sensing (CRNS) is a non-invasive tool for measuring hydrogen pools such as soil moisture, snow or vegetation. The intrinsic integration over a radial hectare-scale footprint is a clear advantage for averaging out small-scale heterogeneity, but on the other hand the data may become hard to interpret in complex terrain with patchy land use. This study presents a directional shielding approach to prevent neutrons from certain angles from being counted while counting neutrons entering the detector from other angles and explores its potential to gain a sharper horizontal view on the surrounding soil moisture distribution. Using the Monte Carlo code URANOS (Ultra Rapid Neutron-Only Simulation), we modelled the effect of additional polyethylene shields on the horizontal field of view and assessed its impact on the epithermal count rate, propagated uncertainties and aggregation time. The results demonstrate that directional CRNS measurements are strongly dominated by isotropic neutron transport, which dilutes the signal of the targeted direction especially from the far field. For typical count rates of customary CRNS stations, directional shielding of half-spaces could not lead to acceptable precision at a daily time resolution. However, the mere statistical distinction of two rates should be feasible. KW - water-balance KW - quantification KW - calibration KW - validation Y1 - 2021 U6 - https://doi.org/10.5194/gi-11-75-2022 SN - 2193-0864 SN - 2193-0856 VL - 11 SP - 75 EP - 92 PB - Copernicus Publ. CY - Göttingen ER - TY - GEN A1 - Tötzke, Christian A1 - Kardjilov, Nikolay A1 - Hilger, André A1 - Rudolph-Mohr, Nicole A1 - Manke, Ingo A1 - Oswald, Sascha T1 - Three-dimensional in vivo analysis of water uptake and translocation in maize roots by fast neutron tomography T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Root water uptake is an essential process for terrestrial plants that strongly affects the spatiotemporal distribution of water in vegetated soil. Fast neutron tomography is a recently established non-invasive imaging technique capable to capture the 3D architecture of root systems in situ and even allows for tracking of three-dimensional water flow in soil and roots. We present an in vivo analysis of local water uptake and transport by roots of soil-grown maize plants—for the first time measured in a three-dimensional time-resolved manner. Using deuterated water as tracer in infiltration experiments, we visualized soil imbibition, local root uptake, and tracked the transport of deuterated water throughout the fibrous root system for a day and night situation. This revealed significant differences in water transport between different root types. The primary root was the preferred water transport path in the 13-days-old plants while seminal roots of comparable size and length contributed little to plant water supply. The results underline the unique potential of fast neutron tomography to provide time-resolved 3D in vivo information on the water uptake and transport dynamics of plant root systems, thus contributing to a better understanding of the complex interactions of plant, soil and water. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1217 KW - Environmental sciences KW - Optics and photonics KW - Plant sciences Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-529915 SN - 1866-8372 ER - TY - JOUR A1 - Haber-Pohlmeier, Sabina A1 - Tötzke, Christian A1 - Oswald, Sascha A1 - Lehmann, Eberhard A1 - Blümich, Bernhard A1 - Pohlmeier, Andreas T1 - Imaging of root zone processes using MRI T-1 mapping JF - Microporous and mesoporous materials : zeolites, clays, carbons and related materials N2 - Noninvasive imaging in the root soil compartment is mandatory for improving knowledge about root soil interactions and uptake processes which eventually control crop growth and productivity. Here we propose a method of MRI T-1 relaxation mapping to investigate water uptake patterns, and as second example, in combination with neutron tomography (NT), property changes in the rhizosphere. The first part demonstrates quantification of solute enrichment by advective transport to the roots due to water uptake. This accumulation is counterbalanced by net downward flow and dispersive spreading. One can furthermore discriminate between zones of high accumulation patterns and zones with much less enrichment. This behavior persists over days. The second part presents the novel combination of MRI with neutron tomography to couple static, proton density information of roots and their interface to the surrounding soil with information about the local water dynamics, reflected by NMR relaxation times. The root soil interface of a broad bean plant is characterized by slightly increasing MRI and NT signal intensity but decreasing T-1 relaxation time indicating locally changed soil properties. KW - Low field MRI KW - Neutron tomography KW - Root zone processes KW - Solute transport KW - Quantification of contrast agent KW - T1 mapping Y1 - 2017 U6 - https://doi.org/10.1016/j.micromeso.2017.10.046 SN - 1387-1811 SN - 1873-3093 VL - 269 SP - 43 EP - 46 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Tötzke, Christian A1 - Kardjilov, Nikolay A1 - Lenoir, Nicolas A1 - Manke, Ingo A1 - Oswald, Sascha A1 - Tengattini, Alessandro T1 - What comes NeXT? BT - High-Speed Neutron Tomography at ILL JF - Optics express : the international electronic journal of optics N2 - Here, we report on a new record in the acquisition time for fast neutron tomography. With an optimized imaging setup, it was possible to acquire single radiographic projection images with 10 ms and full tomographies with 155 projections images and a physical spatial resolution of 200 mu m within 1.5 s. This is about 6.7 times faster than the current record. We used the technique to investigate the water infiltration in the soil with a living lupine root system. The fast imaging setup will be part of the future NeXT instrument at ILL in Grenoble with a great field of possible future applications. (C) 2019 Optical Society of America under the terms of the OSA Open Access Publishing Agreement Y1 - 2019 U6 - https://doi.org/10.1364/OE.27.028640 SN - 1094-4087 VL - 27 IS - 20 SP - 28640 EP - 28648 PB - Optical Society of America CY - Washington ER - TY - JOUR A1 - Rudolph-Mohr, Nicole A1 - Toetzke, Christian A1 - Kardjilov, Nikolay A1 - Oswald, Sascha T1 - Mapping water, oxygen, and pH dynamics in the rhizosphere of young maize roots JF - Journal of plant nutrition and soil science = Zeitschrift für Pflanzenernährung und Bodenkunde N2 - Rhizosphere processes are highly dynamic in time and space and strongly depend on each other. Key factors influencing pH changes in the rhizosphere are root exudation, respiration, and nutrient supply, which are influenced by soil water content levels. In this study, we measured the real-time distribution of soil water, pH changes, and oxygen distribution in the rhizosphere of young maize plants using a recently developed imaging approach. Neutron radiography was used to capture the root system and soil water distribution, while fluorescence imaging was employed to map soil pH and soil oxygen changes. Germinated seeds of maize (Zea mays L.) were planted in glass rhizotrons equipped with pH and oxygen-sensitive sensor foils. After 20 d, the rhizotrons were wetted from the bottom and time-lapsed images via fluorescence and neutron imaging were taken during the subsequent day and night cycles for 5 d. We found higher water content and stronger acidification in the first 0.5 mm from the root surface compared to the bulk soil, which could be a consequence of root exudation. While lateral roots only slightly acidified their rhizosphere, crown roots induced stronger acidification of up to 1 pH unit. We observed changing oxygen patterns at different soil moisture conditions and increasing towards lateral as well as crown roots while extending laterally with ongoing water logging. Our work indicates that plants alter the rhizosphere pH and oxygen also depending on root type, which may indirectly arise also from differences in age and water content changes. The results presented here were possible only by combining different imaging techniques to examine profiles at the root-soil interface in a comprehensive way during wetting and drying. KW - crown roots KW - imaging KW - optical sensors KW - root exudation KW - root respiration Y1 - 2017 U6 - https://doi.org/10.1002/jpln.201600120 SN - 1436-8730 SN - 1522-2624 VL - 180 SP - 336 EP - 346 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Munz, Matthias A1 - Oswald, Sascha A1 - Schmidt, Christian T1 - Coupled Long-Term Simulation of Reach-Scale Water and Heat Fluxes Across the River-Groundwater Interface for Retrieving Hyporheic Residence Times and Temperature Dynamics JF - Water resources research N2 - Flow patterns in conjunction with seasonal and diurnal temperature variations control ecological and biogeochemical conditions in hyporheic sediments. In particular, hyporheic temperatures have a great impact on many temperature-sensitive microbial processes. In this study, we used 3-D coupled water flow and heat transport simulations applying the HydroGeoSphere code in combination with high-resolution observations of hydraulic heads and temperatures to quantify reach-scale water and heat flux across the river-groundwater interface and hyporheic temperature dynamics of a lowland gravel bed river. The model was calibrated in order to constrain estimates of the most sensitive model parameters. The magnitude and variations of the simulated temperatures matched the observed ones, with an average mean absolute error of 0.7 degrees C and an average Nash Sutcliffe efficiency of 0.87. Our results indicate that nonsubmerged streambed structures such as gravel bars cause substantial thermal heterogeneity within the saturated sediment at the reach scale. Individual hyporheic flow path temperatures strongly depend on the flow path residence time, flow path depth, river, and groundwater temperature. Variations in individual hyporheic flow path temperatures were up to 7.9 degrees C, significantly higher than the daily average (2.8 degrees C), but still lower than the average seasonal hyporheic temperature difference (19.2 degrees C). The distribution between flow path temperatures and residence times follows a power law relationship with exponent of about 0.37. Based on this empirical relation, we further estimated the influence of hyporheic flow path residence time and temperature on oxygen consumption which was found to partly increase by up to 29% in simulations. Y1 - 2017 U6 - https://doi.org/10.1002/2017WR020667 SN - 0043-1397 SN - 1944-7973 VL - 53 SP - 8900 EP - 8924 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Toetzke, Christian A1 - Kardjilov, Nikolay A1 - Manke, Ingo A1 - Oswald, Sascha T1 - Capturing 3D Water Flow in Rooted Soil by Ultra-fast Neutron Tomography JF - Scientific reports N2 - Water infiltration in soil is not only affected by the inherent heterogeneities of soil, but even more by the interaction with plant roots and their water uptake. Neutron tomography is a unique non-invasive 3D tool to visualize plant root systems together with the soil water distribution in situ. So far, acquisition times in the range of hours have been the major limitation for imaging 3D water dynamics. Implementing an alternative acquisition procedure we boosted the speed of acquisition capturing an entire tomogram within 10 s. This allows, for the first time, tracking of a water front ascending in a rooted soil column upon infiltration of deuterated water time-resolved in 3D. Image quality and resolution could be sustained to a level allowing for capturing the root system in high detail. Good signal-to-noise ratio and contrast were the key to visualize dynamic changes in water content and to localize the root uptake. We demonstrated the ability of ultra-fast tomography to quantitatively image quick changes of water content in the rhizosphere and outlined the value of such imaging data for 3D water uptake modelling. The presented method paves the way for time-resolved studies of various 3D flow and transport phenomena in porous systems. Y1 - 2017 U6 - https://doi.org/10.1038/s41598-017-06046-w SN - 2045-2322 VL - 7 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Tötzke, Christian A1 - Oswald, Sascha A1 - Hilger, André A1 - Kardjilov, Nikolay T1 - Non-invasive detection and localization of microplastic particles in a sandy sediment by complementary neutron and X-ray tomography JF - Journal of soils and sediments : protection, risk assessment and remediation N2 - Purpose Microplastics have become a ubiquitous pollutant in marine, terrestrial and freshwater systems that seriously affects aquatic and terrestrial ecosystems. Common methods for analysing microplastic abundance in soil or sediments are based on destructive sampling or involve destructive sample processing. Thus, substantial information about local distribution of microplastics is inevitably lost. Methods Tomographic methods have been explored in our study as they can help to overcome this limitation because they allow the analysis of the sample structure while maintaining its integrity. However, this capability has not yet been exploited for detection of environmental microplastics. We present a bimodal 3D imaging approach capable to detect microplastics in soil or sediment cores non-destructively. Results In a first pilot study, we demonstrate the unique potential of neutrons to sense and localize microplastic particles in sandy sediment. The complementary application of X-rays allows mineral grains to be discriminated from microplastic particles. Additionally, it yields detailed information on the 3D surroundings of each microplastic particle, which supports its size and shape determination. Conclusion The procedure we developed is able to identify microplastic particles with diameters of approximately 1 mm in a sandy soil. It also allows characterisation of the shape of the microplastic particles as well as the microstructure of the soil and sediment sample as depositional background information. Transferring this approach to environmental samples presents the opportunity to gain insights of the exact distribution of microplastics as well as their past deposition, deterioration and translocation processes. KW - Neutron imaging KW - Sediment core KW - Non-destructive analysis KW - Microplastic KW - detection KW - Shape and size Y1 - 2021 U6 - https://doi.org/10.1007/s11368-021-02882-6 SN - 1439-0108 SN - 1614-7480 VL - 21 IS - 3 SP - 1476 EP - 1487 PB - Springer CY - Berlin ; Heidelberg ER - TY - JOUR A1 - Rudolph-Mohr, Nicole A1 - Bereswill, Sarah A1 - Tötzke, Christian A1 - Kardjilov, Nikolay A1 - Oswald, Sascha T1 - Neutron computed laminography yields 3D root system architecture and complements investigations of spatiotemporal rhizosphere patterns JF - Plant and soil N2 - Purpose Root growth, respiration, water uptake as well as root exudation induce biogeochemical patterns in the rhizosphere that can change dynamically over time. Our aim is to develop a method that provides complementary information on 3D root system architecture and biogeochemical gradients around the roots needed for the quantitative description of rhizosphere processes. Methods We captured for the first time the root system architecture of maize plants grown in rectangular rhizotrons in 3D using neutron computed laminography (NCL). Simultaneously, we measured pH and oxygen concentration using fluorescent optodes and the 2D soil water distribution by means of neutron radiography. We co-registered the 3D laminography data with the 2D oxygen and pH maps to analyze the sensor signal as a function of the distance between the roots and the optode. Results The 3D root system architecture was successfully segmented from the laminographic data. We found that exudation of roots in up to 2 mm distance to the pH optode induced patterns of local acidification or alkalization. Over time, oxygen gradients in the rhizosphere emerged for roots up to a distance of 7.5 mm. Conclusion Neutron computed laminography allows for a three-dimensional investigation of root systems grown in laterally extended rhizotrons as the ones designed for 2D optode imaging studies. The 3D information on root position within the rhizotrons derived by NCL explained measured 2D oxygen and pH distribution. The presented new combination of 3D and 2D imaging methods facilitates systematical investigations of a wide range of dynamic processes in the rhizosphere. KW - laminography KW - neutron imaging KW - rhizosphere biogeochemistry KW - 3D root KW - system architecture KW - root-soil interaction KW - root activity Y1 - 2021 U6 - https://doi.org/10.1007/s11104-021-05120-7 SN - 0032-079X SN - 1573-5036 VL - 469 IS - 1-2 SP - 489 EP - 501 PB - Springer CY - Dordrecht ER - TY - GEN A1 - Francke, Till A1 - Heistermann, Maik A1 - Köhli, Markus A1 - Budach, Christian A1 - Schrön, Martin A1 - Oswald, Sascha T1 - Assessing the feasibility of a directional cosmic-ray neutron sensing sensor for estimating soil moisture T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Cosmic-ray neutron sensing (CRNS) is a non-invasive tool for measuring hydrogen pools such as soil moisture, snow or vegetation. The intrinsic integration over a radial hectare-scale footprint is a clear advantage for averaging out small-scale heterogeneity, but on the other hand the data may become hard to interpret in complex terrain with patchy land use. This study presents a directional shielding approach to prevent neutrons from certain angles from being counted while counting neutrons entering the detector from other angles and explores its potential to gain a sharper horizontal view on the surrounding soil moisture distribution. Using the Monte Carlo code URANOS (Ultra Rapid Neutron-Only Simulation), we modelled the effect of additional polyethylene shields on the horizontal field of view and assessed its impact on the epithermal count rate, propagated uncertainties and aggregation time. The results demonstrate that directional CRNS measurements are strongly dominated by isotropic neutron transport, which dilutes the signal of the targeted direction especially from the far field. For typical count rates of customary CRNS stations, directional shielding of half-spaces could not lead to acceptable precision at a daily time resolution. However, the mere statistical distinction of two rates should be feasible. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1228 KW - water-balance KW - quantification KW - calibration KW - validation Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-544229 SN - 1866-8372 SP - 75 EP - 92 ER - TY - JOUR A1 - Munz, Matthias A1 - Oswald, Sascha A1 - Schmidt, Christian T1 - Analysis of riverbed temperatures to determine the geometry of subsurface water flow around in-stream geomorphological structures JF - Journal of hydrology N2 - The analytical evaluation of diurnal temperature variation in riverbed sediments provides detailed information on exchange fluxes between rivers and groundwater. The underlying assumption of the stationary, one-dimensional vertical flow field is frequently violated in natural systems where subsurface water flow often has a significant horizontal component. In this paper, we present a new methodology for identifying the geometry of the subsurface flow field using vertical temperature profiles. The statistical analyses are based on model optimisation and selection and are used to evaluate the shape of vertical amplitude ratio profiles. The method was applied to multiple profiles measured around in-stream geomorphological structures in a losing reach of a gravel bed river. The predominant subsurface flow field was systematically categorised in purely vertical and horizontal (hyporheic, parafluvial) components. The results highlight that river groundwater exchange flux at the head, crest and tail of geomorphological structures significantly deviated from the one-dimensional vertical flow, due to a significant horizontal component. The geometry of the subsurface water flow depended on the position around the geomorphological structures and on the river level. The methodology presented in this paper features great potential for characterising the spatial patterns and temporal dynamics of complex subsurface flow geometries by using measured temperature time series in vertical profiles. (C) 2016 Elsevier B.V. All rights reserved. KW - Temperature time series KW - Amplitude ratio KW - River-groundwater exchange KW - Hyporheic zone KW - In-stream geomorphological structures KW - River restoration Y1 - 2016 U6 - https://doi.org/10.1016/j.jhydrol.2016.05.012 SN - 0022-1694 SN - 1879-2707 VL - 539 SP - 74 EP - 87 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Heistermann, Maik A1 - Francke, Till A1 - Scheiffele, Lena A1 - Petrova, Katya Dimitrova A1 - Budach, Christian A1 - Schrön, Martin A1 - Trost, Benjamin A1 - Rasche, Daniel A1 - Güntner, Andreas A1 - Doepper, Veronika A1 - Förster, Michael A1 - Köhli, Markus A1 - Angermann, Lisa A1 - Antonoglou, Nikolaos A1 - Zude, Manuela A1 - Oswald, Sascha T1 - Three years of soil moisture observations by a dense cosmic-ray neutron sensing cluster at an agricultural research site in north-east Germany JF - Earth system science data : ESSD N2 - Cosmic-ray neutron sensing (CRNS) allows for the estimation of root-zone soil water content (SWC) at the scale of several hectares. In this paper, we present the data recorded by a dense CRNS network operated from 2019 to 2022 at an agricultural research site in Marquardt, Germany - the first multi-year CRNS cluster. Consisting, at its core, of eight permanently installed CRNS sensors, the cluster was supplemented by a wealth of complementary measurements: data from seven additional temporary CRNS sensors, partly co-located with the permanent ones; 27 SWC profiles (mostly permanent); two groundwater observation wells; meteorological records; and Global Navigation Satellite System reflectometry (GNSS-R). Complementary to these continuous measurements, numerous campaign-based activities provided data by mobile CRNS roving, hyperspectral im-agery via UASs, intensive manual sampling of soil properties (SWC, bulk density, organic matter, texture, soil hydraulic properties), and observations of biomass and snow (cover, depth, and density). The unique temporal coverage of 3 years entails a broad spectrum of hydro-meteorological conditions, including exceptional drought periods and extreme rainfall but also episodes of snow coverage, as well as a dedicated irrigation experiment. Apart from serving to advance CRNS-related retrieval methods, this data set is expected to be useful for vari-ous disciplines, for example, soil and groundwater hydrology, agriculture, or remote sensing. Hence, we show exemplary features of the data set in order to highlight the potential for such subsequent studies. The data are available at doi.org/10.23728/b2share.551095325d74431881185fba1eb09c95 (Heistermann et al., 2022b). Y1 - 2023 U6 - https://doi.org/10.5194/essd-15-3243-2023 SN - 1866-3508 SN - 1866-3516 VL - 15 IS - 7 SP - 3243 EP - 3262 PB - Copernics Publications CY - Katlenburg-Lindau ER - TY - JOUR A1 - Bereswill, Sarah A1 - Gatz-Miller, Hannah A1 - Su, Danyang A1 - Tötzke, Christian A1 - Kardjilov, Nikolay A1 - Oswald, Sascha A1 - Mayer, Klaus Ulrich T1 - Coupling non-invasive imaging and reactive transport modeling to investigate water and oxygen dynamics in the root zone JF - Vadose zone journal N2 - Oxygen (O-2) availability in soils is vital for plant growth and productivity. The transport and consumption of O-2 in the root zone is closely linked to soil moisture content, the spatial distribution of roots, as well as structure and heterogeneity of the surrounding soil. In this study, we measure three-dimensional root system architecture and the spatiotemporal dynamics of soil moisture (& theta;) and O-2 concentrations in the root zone of maize (Zea mays) via non-invasive imaging, and then construct and parameterize a reactive transport model based on the experimental data. The combination of three non-invasive imaging methods allowed for a direct comparison of simulation results with observations at high spatial and temporal resolution. In three different modeling scenarios, we investigated how the results obtained for different levels of conceptual complexity in the model were able to match measured & theta; and O-2 concentration patterns. We found that the modeling scenario that considers heterogeneous soil structure and spatial variability of hydraulic parameters (permeability, porosity, and van Genuchten & alpha; and n), better reproduced the measured & theta; and O-2 patterns relative to a simple model with a homogenous soil domain. The results from our combined imaging and modeling analysis reveal that experimental O-2 and water dynamics can be reproduced quantitatively in a reactive transport model, and that O-2 and water dynamics are best characterized when conditions unique to the specific system beyond the distribution of roots, such as soil structure and its effect on water saturation and macroscopic gas transport pathways, are considered. Y1 - 2023 U6 - https://doi.org/10.1002/vzj2.20268 SN - 1539-1663 VL - 22 IS - 5 PB - Wiley CY - Hoboken ER -