TY  - JOUR
A1  - Srama, Ralf
A1  - Kempf, S.
A1  - Moragas-Klostermeyer, Georg
A1  - Helfert, S.
A1  - Ahrens, T. J.
A1  - Altobelli, N.
A1  - Auer, S.
A1  - Beckmann, U.
A1  - Bradley, J. G.
A1  - Burton, M.
A1  - Dikarev, V. V.
A1  - Economou, T.
A1  - Fechtig, H.
A1  - Green, S. F.
A1  - Grande, M.
A1  - Havnes, O.
A1  - Hillierf, J.K.
A1  - Horanyii, M.
A1  - Igenbergsj, E.
A1  - Jessberger, E. K.
A1  - Johnson, T. V.
A1  - Krüger, H.
A1  - Matt, G.
A1  - McBride, N.
A1  - Mocker, A.
A1  - Lamy, P.
A1  - Linkert, D.
A1  - Linkert, G.
A1  - Lura, F.
A1  - McDonnell, J.A.M.
A1  - Möhlmann, D.
A1  - Morfill, G. E.
A1  - Postberg, F.
A1  - Roy, M.
A1  - Schwehm, G.H.
A1  - Spahn, Frank
A1  - Svestka, J.
A1  - Tschernjawski, V.
A1  - Tuzzolino, A. J.
A1  - Wäsch, R.
A1  - Grün, E.
T1  - In situ dust measurements in the inner Saturnian system
JF  - Planetary and space science
N2  - In July 2004 the Cassini–Huygens mission reached the Saturnian system and started its orbital tour. A total of 75 orbits will be carried out during the primary mission until August 2008. In these four years Cassini crosses the ring plane 150 times and spends approx. 400 h within Titan's orbit. The Cosmic Dust Analyser (CDA) onboard Cassini characterises the dust environment with its extended E ring and embedded moons. Here, we focus on the CDA results of the first year and we present the Dust Analyser (DA) data within Titan's orbit. This paper does investigate High Rate Detector data and dust composition measurements. The authors focus on the analysis of impact rates, which were strongly variable primarily due to changes of the spacecraft pointing. An overview is given about the ring plane crossings and the DA counter measurements. The DA dust impact rates are compared with the DA boresight configuration around all ring plane crossings between June 2004 and July 2005. Dust impacts were registered at altitudes as high as 100 000 km above the ring plane at distances from Saturn between 4 and 10 Saturn radii. In those regions the dust density of particles bigger than 0.5 can reach values of 0.001m-3.
KW  - Cassini
KW  - dust
KW  - CDA
KW  - E-ring
KW  - water ice
Y1  - 2006
U6  - https://doi.org/10.1016/j.pss.2006.05.021
SN  - 0032-0633
VL  - 54
IS  - 9-10
SP  - 967
EP  - 987
PB  - Elsevier
CY  - Oxford
ER  - 
TY  - JOUR
A1  - Khider, D.
A1  - Emile-Geay, J.
A1  - McKay, N. P.
A1  - Gil, Y.
A1  - Garijo, D.
A1  - Ratnakar, V
A1  - Alonso-Garcia, M.
A1  - Bertrand, S.
A1  - Bothe, O.
A1  - Brewer, P.
A1  - Bunn, A.
A1  - Chevalier, M.
A1  - Comas-Bru, L.
A1  - Csank, A.
A1  - Dassie, E.
A1  - DeLong, K.
A1  - Felis, T.
A1  - Francus, P.
A1  - Frappier, A.
A1  - Gray, W.
A1  - Goring, S.
A1  - Jonkers, L.
A1  - Kahle, M.
A1  - Kaufman, D.
A1  - Kehrwald, N. M.
A1  - Martrat, B.
A1  - McGregor, H.
A1  - Richey, J.
A1  - Schmittner, A.
A1  - Scroxton, N.
A1  - Sutherland, E.
A1  - Thirumalai, Kaustubh
A1  - Allen, K.
A1  - Arnaud, F.
A1  - Axford, Y.
A1  - Barrows, T.
A1  - Bazin, L.
A1  - Birch, S. E. Pilaar
A1  - Bradley, E.
A1  - Bregy, J.
A1  - Capron, E.
A1  - Cartapanis, O.
A1  - Chiang, H-W
A1  - Cobb, K. M.
A1  - Debret, M.
A1  - Dommain, Réne
A1  - Du, J.
A1  - Dyez, K.
A1  - Emerick, S.
A1  - Erb, M. P.
A1  - Falster, G.
A1  - Finsinger, W.
A1  - Fortier, D.
A1  - Gauthier, Nicolas
A1  - George, S.
A1  - Grimm, E.
A1  - Hertzberg, J.
A1  - Hibbert, F.
A1  - Hillman, A.
A1  - Hobbs, W.
A1  - Huber, M.
A1  - Hughes, A. L. C.
A1  - Jaccard, S.
A1  - Ruan, J.
A1  - Kienast, M.
A1  - Konecky, B.
A1  - Le Roux, G.
A1  - Lyubchich, V
A1  - Novello, V. F.
A1  - Olaka, L.
A1  - Partin, J. W.
A1  - Pearce, C.
A1  - Phipps, S. J.
A1  - Pignol, C.
A1  - Piotrowska, N.
A1  - Poli, M-S
A1  - Prokopenko, A.
A1  - Schwanck, F.
A1  - Stepanek, C.
A1  - Swann, G. E. A.
A1  - Telford, R.
A1  - Thomas, E.
A1  - Thomas, Z.
A1  - Truebe, S.
A1  - von Gunten, L.
A1  - Waite, A.
A1  - Weitzel, N.
A1  - Wilhelm, B.
A1  - Williams, J.
A1  - Winstrup, M.
A1  - Zhao, N.
A1  - Zhou, Y.
T1  - PaCTS 1.0: A Crowdsourced Reporting Standard for Paleoclimate Data
JF  - Paleoceanography and paleoclimatology
N2  - The progress of science is tied to the standardization of measurements, instruments, and data. This is especially true in the Big Data age, where analyzing large data volumes critically hinges on the data being standardized. Accordingly, the lack of community-sanctioned data standards in paleoclimatology has largely precluded the benefits of Big Data advances in the field. Building upon recent efforts to standardize the format and terminology of paleoclimate data, this article describes the Paleoclimate Community reporTing Standard (PaCTS), a crowdsourced reporting standard for such data. PaCTS captures which information should be included when reporting paleoclimate data, with the goal of maximizing the reuse value of paleoclimate data sets, particularly for synthesis work and comparison to climate model simulations. Initiated by the LinkedEarth project, the process to elicit a reporting standard involved an international workshop in 2016, various forms of digital community engagement over the next few years, and grassroots working groups. Participants in this process identified important properties across paleoclimate archives, in addition to the reporting of uncertainties and chronologies; they also identified archive-specific properties and distinguished reporting standards for new versus legacy data sets. This work shows that at least 135 respondents overwhelmingly support a drastic increase in the amount of metadata accompanying paleoclimate data sets. Since such goals are at odds with present practices, we discuss a transparent path toward implementing or revising these recommendations in the near future, using both bottom-up and top-down approaches.
KW  - standards
KW  - FAIR
KW  - paleoclimate
KW  - paleoceanography
KW  - data
KW  - best practices
Y1  - 2019
U6  - https://doi.org/10.1029/2019PA003632
SN  - 2572-4517
SN  - 2572-4525
VL  - 34
IS  - 10
SP  - 1570
EP  - 1596
PB  - American Geophysical Union
CY  - Washington
ER  - 
TY  - JOUR
A1  - Srama, Ralf
A1  - Ahrens, Thomas J.
A1  - Altobelli, Nicolas
A1  - Auer, S.
A1  - Bradley, J. G.
A1  - Burton, M.
A1  - Dikarev, V. V.
A1  - Economou, T.
A1  - Fechtig, Hugo
A1  - Görlich, M.
A1  - Grande, M.
A1  - Graps, Amara
A1  - Grün, Eberhard
A1  - Havnes, Ove
A1  - Helfert, Stefan
A1  - Horanyi, Mihaly
A1  - Igenbergs, E.
A1  - Jessberger, Elmar K.
A1  - Johnson, T. V.
A1  - Kempf, Sascha
A1  - Krivov, Alexander v.
A1  - Krüger, Harald
A1  - Mocker-Ahlreep, Anna
A1  - Moragas-Klostermeyer, Georg
A1  - Lamy, Philippe
A1  - Landgraf, Markus
A1  - Linkert, Dietmar
A1  - Linkert, G.
A1  - Lura, F.
A1  - McDonnell, J. A. M.
A1  - Moehlmann, Dirk
A1  - Morfill, Gregory E.
A1  - Muller, M.
A1  - Roy, M.
A1  - Schafer, G.
A1  - Schlotzhauer, G.
A1  - Schwehm, Gerhard H.
A1  - Spahn, Frank
A1  - Stübig, M.
A1  - Svestka, Jiri
A1  - Tschernjawski, V
T1  - The Cassini Cosmic Dust Analyzer
N2  - The Cassini-Huygens Cosmic Dust Analyzer (CDA) is intended to provide direct observations of dust grains with masses between 10(-19) and 10(-9) kg in interplanetary space and in the jovian and saturnian systems, to investigate their physical, chemical and dynamical properties as functions of the distances to the Sun, to Jupiter and to Saturn and its satellites and rings, to study their interaction with the saturnian rings, satellites and magnetosphere. Chemical composition of interplanetary meteoroids will be compared with asteroidal and cometary dust, as well as with Saturn dust, ejecta from rings and satellites. Ring and satellites phenomena which might be effects of meteoroid impacts will be compared with the interplanetary dust environment. Electrical charges of particulate matter in the magnetosphere and its consequences will be studied, e.g. the effects of the ambient plasma and the magnetic held on the trajectories of dust particles as well as fragmentation of particles due to electrostatic disruption. The investigation will be performed with an instrument that measures the mass, composition, electric charge, speed, and flight direction of individual dust particles. It is a highly reliable and versatile instrument with a mass sensitivity 106 times higher than that of the Pioneer 10 and I I dust detectors which measured dust in the saturnian system. The Cosmic Dust Analyzer has significant inheritance from former space instrumentation developed for the VEGA, Giotto, Galileo, and Ulysses missions. It will reliably measure impacts from as low as I impact per month up to 104 impacts per second. The instrument weighs 17 kg and consumes 12 W, the integrated time-of-flight mass spectrometer has a mass resolution of up to 50. The nominal data transmission rate is 524 bits/s and varies between 50 and 4192 bps
Y1  - 2004
SN  - 0038-6308
ER  - 
TY  - JOUR
A1  - Charpinet, Stéphane
A1  - Brassard, P.
A1  - Fontaine, G.
A1  - Van Grootel, Valerie
A1  - Zong, Weika
A1  - Giammichele, N.
A1  - Heber, Ulrich
A1  - Bognár, Zsófia
A1  - Geier, Stephan
A1  - Green, Elizabeth M.
A1  - Hermes, J. J.
A1  - Kilkenny, D.
A1  - Ostensen, R. H.
A1  - Pelisoli, Ingrid Domingos
A1  - Silvotti, R.
A1  - Telting, J. H.
A1  - Vuckovic, Maja
A1  - Worters, H. L.
A1  - Baran, Andrzej S.
A1  - Bell, Keaton J.
A1  - Bradley, Paul A.
A1  - Debes, J. H.
A1  - Kawaler, S. D.
A1  - Kolaczek-Szymanski, P.
A1  - Murphy, S. J.
A1  - Pigulski, A.
A1  - Sodor, A.
A1  - Uzundag, Murat
A1  - Handberg, R.
A1  - Kjeldsen, H.
A1  - Ricker, G. R.
A1  - Vanderspek, R. K.
T1  - TESS first look at evolved compact pulsators Discovery and asteroseismic probing of the g-mode hot B subdwarf pulsator EC 21494-7018
JF  - Astronomy and astrophysics : an international weekly journal
N2  - Context. The TESS satellite was launched in 2018 to perform high-precision photometry from space over almost the whole sky in a search for exoplanets orbiting bright stars. This instrument has opened new opportunities to study variable hot subdwarfs, white dwarfs, and related compact objects. Targets of interest include white dwarf and hot subdwarf pulsators, both carrying high potential for asteroseismology. Aims. We present the discovery and detailed asteroseismic analysis of a new g-mode hot B subdwarf (sdB) pulsator, EC 21494-7018 (TIC 278659026), monitored in TESS first sector using 120-s cadence. Methods. The TESS light curve was analyzed with standard prewhitening techniques, followed by forward modeling using our latest generation of sdB models developed for asteroseismic investigations. By simultaneously best-matching all the observed frequencies with those computed from models, we identified the pulsation modes detected and, more importantly, we determined the global parameters and structural configuration of the star. Results. The light curve analysis reveals that EC 21494-7018 is a sdB pulsator counting up to 20 frequencies associated with independent g-modes. The seismic analysis singles out an optimal model solution in full agreement with independent measurements provided by spectroscopy (atmospheric parameters derived from model atmospheres) and astrometry (distance evaluated from Gaia DR2 trigonometric parallax). Several key parameters of the star are derived. Its mass (0.391 +/- 0.009x2006;M-circle dot) is significantly lower than the typical mass of sdB stars and suggests that its progenitor has not undergone the He-core flash; therefore this progenitor could originate from a massive (greater than or similar to 2;M-circle dot) red giant, which is an alternative channel for the formation of sdBs. Other derived parameters include the H-rich envelope mass (0.0037 +/- 0.0010;M-circle dot), radius (0.1694 +/- 0.0081;R-circle dot), and luminosity (8.2 +/- 1.1;L-circle dot). The optimal model fit has a double-layered He+H composition profile, which we interpret as an incomplete but ongoing process of gravitational settling of helium at the bottom of a thick H-rich envelope. Moreover, the derived properties of the core indicate that EC 21494-7018 has burnt similar to 43% (in mass) of its central helium and possesses a relatively large mixed core (M-core;=;0.198 +/- 0.010;M-circle dot), in line with trends already uncovered from other g-mode sdB pulsators analyzed with asteroseismology. Finally, we obtain for the first time an estimate of the amount of oxygen (in mass; X(O)(core) = 0.16(-0.05)(+0.13)X(O)core=0.16-0.05+0.13$ X(mathrm{O})_{mathrm{core}}=0.16_{-0.05}<^>{+0.13} $) produced at this stage of evolution by an helium-burning core. This result, along with the core-size estimate, is an interesting constraint that may help to narrow down the still uncertain C-12(alpha,;gamma)O-16 nuclear reaction rate.
KW  - asteroseismology
KW  - stars
KW  - interiors
KW  - oscillations
KW  - horizontal-branch
KW  - individual
KW  - TIC 278659026
KW  - subdwarfs
Y1  - 2019
U6  - https://doi.org/10.1051/0004-6361/201935395
SN  - 0004-6361
SN  - 1432-0746
VL  - 632
PB  - EDP Sciences
CY  - Les Ulis
ER  - 
TY  - JOUR
A1  - Huss, Matthias
A1  - Bookhagen, Bodo
A1  - Huggel, C.
A1  - Jacobsen, Dean
A1  - Bradley, Raymond S.
A1  - Clague, J. J.
A1  - Vuille, Mathias
A1  - Buytaert, Wouter
A1  - Cayan, D. R.
A1  - Greenwood, G.
A1  - Mark, B. G.
A1  - Milner, A. M.
A1  - Weingartner, Rolf
A1  - Winder, M.
T1  - Toward mountains without permanent snow and ice
JF  - Earths future
N2  - The cryosphere in mountain regions is rapidly declining, a trend that is expected to accelerate over the next several decades due to anthropogenic climate change. A cascade of effects will result, extending from mountains to lowlands with associated impacts on human livelihood, economy, and ecosystems. With rising air temperatures and increased radiative forcing, glaciers will become smaller and, in some cases, disappear, the area of frozen ground will diminish, the ratio of snow to rainfall will decrease, and the timing and magnitude of both maximum and minimum streamflow will change. These changes will affect erosion rates, sediment, and nutrient flux, and the biogeochemistry of rivers and proglacial lakes, all of which influence water quality, aquatic habitat, and biotic communities. Changes in the length of the growing season will allow low-elevation plants and animals to expand their ranges upward. Slope failures due to thawing alpine permafrost, and outburst floods from glacier-and moraine-dammed lakes will threaten downstream populations.Societies even well beyond the mountains depend on meltwater from glaciers and snow for drinking water supplies, irrigation, mining, hydropower, agriculture, and recreation. Here, we review and, where possible, quantify the impacts of anticipated climate change on the alpine cryosphere, hydrosphere, and biosphere, and consider the implications for adaptation to a future of mountains without permanent snow and ice.
Y1  - 2017
U6  - https://doi.org/10.1002/2016EF000514
SN  - 2328-4277
VL  - 5
SP  - 418
EP  - 435
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - JOUR
A1  - Arnison, Paul G.
A1  - Bibb, Mervyn J.
A1  - Bierbaum, Gabriele
A1  - Bowers, Albert A.
A1  - Bugni, Tim S.
A1  - Bulaj, Grzegorz
A1  - Camarero, Julio A.
A1  - Campopiano, Dominic J.
A1  - Challis, Gregory L.
A1  - Clardy, Jon
A1  - Cotter, Paul D.
A1  - Craik, David J.
A1  - Dawson, Michael
A1  - Dittmann-Thünemann, Elke
A1  - Donadio, Stefano
A1  - Dorrestein, Pieter C.
A1  - Entian, Karl-Dieter
A1  - Fischbach, Michael A.
A1  - Garavelli, John S.
A1  - Goeransson, Ulf
A1  - Gruber, Christian W.
A1  - Haft, Daniel H.
A1  - Hemscheidt, Thomas K.
A1  - Hertweck, Christian
A1  - Hill, Colin
A1  - Horswill, Alexander R.
A1  - Jaspars, Marcel
A1  - Kelly, Wendy L.
A1  - Klinman, Judith P.
A1  - Kuipers, Oscar P.
A1  - Link, A. James
A1  - Liu, Wen
A1  - Marahiel, Mohamed A.
A1  - Mitchell, Douglas A.
A1  - Moll, Gert N.
A1  - Moore, Bradley S.
A1  - Mueller, Rolf
A1  - Nair, Satish K.
A1  - Nes, Ingolf F.
A1  - Norris, Gillian E.
A1  - Olivera, Baldomero M.
A1  - Onaka, Hiroyasu
A1  - Patchett, Mark L.
A1  - Piel, Jörn
A1  - Reaney, Martin J. T.
A1  - Rebuffat, Sylvie
A1  - Ross, R. Paul
A1  - Sahl, Hans-Georg
A1  - Schmidt, Eric W.
A1  - Selsted, Michael E.
A1  - Severinov, Konstantin
A1  - Shen, Ben
A1  - Sivonen, Kaarina
A1  - Smith, Leif
A1  - Stein, Torsten
A1  - Suessmuth, Roderich D.
A1  - Tagg, John R.
A1  - Tang, Gong-Li
A1  - Truman, Andrew W.
A1  - Vederas, John C.
A1  - Walsh, Christopher T.
A1  - Walton, Jonathan D.
A1  - Wenzel, Silke C.
A1  - Willey, Joanne M.
A1  - van der Donk, Wilfred A.
T1  - Ribosomally synthesized and post-translationally modified peptide natural products overview and recommendations for a universal nomenclature
JF  - Natural product reports : a journal of current developments in bio-organic chemistry
N2  - This review presents recommended nomenclature for the biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPPs), a rapidly growing class of natural products. The current knowledge regarding the biosynthesis of the >20 distinct compound classes is also reviewed, and commonalities are discussed.
Y1  - 2013
U6  - https://doi.org/10.1039/c2np20085f
SN  - 0265-0568
VL  - 30
IS  - 1
SP  - 108
EP  - 160
PB  - Royal Society of Chemistry
CY  - Cambridge
ER  - 
TY  - GEN
A1  - Zancolli, Giulia
A1  - Baker, Timothy G.
A1  - Barlow, Axel
A1  - Bradley, Rebecca K.
A1  - Calvete, Juan J.
A1  - Carter, Kimberley C.
A1  - de Jager, Kaylah
A1  - Owens, John Benjamin
A1  - Price, Jenny Forrester
A1  - Sanz, Libia
A1  - Scholes-Higham, Amy
A1  - Shier, Liam
A1  - Wood, Liam
A1  - Wüster, Catharine E.
A1  - Wüster, Wolfgang
T1  - Is hybridization a source of adaptive venom variation in rattlesnakes?
BT  - a test, using a crotalus scutulatus × viridis hybrid zone in southwestern New Mexico
T2  - Toxins
N2  - Venomous snakes often display extensive variation in venom composition both between and within species. However, the mechanisms underlying the distribution of different toxins and venom types among populations and taxa remain insufficiently known. Rattlesnakes (Crotalus, Sistrurus) display extreme inter-and intraspecific variation in venom composition, centered particularly on the presence or absence of presynaptically neurotoxic phospholipases A2 such as Mojave toxin (MTX). Interspecific hybridization has been invoked as a mechanism to explain the distribution of these toxins across rattlesnakes, with the implicit assumption that they are adaptively advantageous. Here, we test the potential of adaptive hybridization as a mechanism for venom evolution by assessing the distribution of genes encoding the acidic and basic subunits of Mojave toxin across a hybrid zone between MTX-positive Crotalus scutulatus and MTX-negative C. viridis in southwestern New Mexico, USA. Analyses of morphology, mitochondrial and single copy-nuclear genes document extensive admixture within a narrow hybrid zone. The genes encoding the two MTX subunits are strictly linked, and found in most hybrids and backcrossed individuals, but not in C. viridis away from the hybrid zone. Presence of the genes is invariably associated with presence of the corresponding toxin in the venom. We conclude that introgression of highly lethal neurotoxins through hybridization is not necessarily favored by natural selection in rattlesnakes, and that even extensive hybridization may not lead to introgression of these genes into another species.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 443 
KW  - adaptation
KW  - Crotalus
KW  - evolution
KW  - hybridization
KW  - introgression
KW  - Mojave toxin
KW  - molecular evolution
KW  - venom
Y1  - 2018
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407595
ER  - 
TY  - JOUR
A1  - Zancolli, Giulia
A1  - Baker, Timothy G.
A1  - Barlow, Axel
A1  - Bradley, Rebecca K.
A1  - Calvete, Juan J.
A1  - Carter, Kimberley C.
A1  - de Jager, Kaylah
A1  - Owens, John Benjamin
A1  - Price, Jenny Forrester
A1  - Sanz, Libia
A1  - Scholes-Higham, Amy
A1  - Shier, Liam
A1  - Wood, Liam
A1  - Wüster, Catharine E.
A1  - Wüster, Wolfgang
T1  - Is Hybridization a Source of Adaptive Venom Variation in Rattlesnakes? A Test, Using a Crotalus scutulatus x viridis Hybrid Zone in Southwestern New Mexico
JF  - Toxins
N2  - Venomous snakes often display extensive variation in venom composition both between and within species. However, the mechanisms underlying the distribution of different toxins and venom types among populations and taxa remain insufficiently known. Rattlesnakes (Crotalus, Sistrurus) display extreme inter-and intraspecific variation in venom composition, centered particularly on the presence or absence of presynaptically neurotoxic phospholipases A2 such as Mojave toxin (MTX). Interspecific hybridization has been invoked as a mechanism to explain the distribution of these toxins across rattlesnakes, with the implicit assumption that they are adaptively advantageous. Here, we test the potential of adaptive hybridization as a mechanism for venom evolution by assessing the distribution of genes encoding the acidic and basic subunits of Mojave toxin across a hybrid zone between MTX-positive Crotalus scutulatus and MTX-negative C. viridis in southwestern New Mexico, USA. Analyses of morphology, mitochondrial and single copy-nuclear genes document extensive admixture within a narrow hybrid zone. The genes encoding the two MTX subunits are strictly linked, and found in most hybrids and backcrossed individuals, but not in C. viridis away from the hybrid zone. Presence of the genes is invariably associated with presence of the corresponding toxin in the venom. We conclude that introgression of highly lethal neurotoxins through hybridization is not necessarily favored by natural selection in rattlesnakes, and that even extensive hybridization may not lead to introgression of these genes into another species.
KW  - adaptation
KW  - Crotalus
KW  - evolution
KW  - hybridization
KW  - introgression
KW  - Mojave toxin
KW  - molecular evolution
KW  - venom
Y1  - 2016
U6  - https://doi.org/10.3390/toxins8060188
SN  - 2072-6651
VL  - 8
PB  - MDPI
CY  - Basel
ER  - 
TY  - JOUR
A1  - Teasdale, Matthew David
A1  - van Doorn, N. L.
A1  - Fiddyment, S.
A1  - Webb, C. C.
A1  - Hofreiter, Michael
A1  - Collins, Matthew J.
A1  - Bradley, Daniel G.
T1  - Paging through history: parchment as a reservoir of ancient DNA for next generation sequencing
JF  - Philosophical transactions of the Royal Society of London : B, Biological sciences
N2  - Parchment represents an invaluable cultural reservoir. Retrieving an additional layer of information from these abundant, dated livestock-skins via the use of ancient DNA (aDNA) sequencing has been mooted by a number of researchers. However, prior PCR-based work has indicated that this may be challenged by cross-individual and cross-species contamination, perhaps from the bulk parchment preparation process. Here we apply next generation sequencing to two parchments of seventeenth and eighteenth century northern English provenance. Following alignment to the published sheep, goat, cow and human genomes, it is clear that the only genome displaying substantial unique homology is sheep and this species identification is confirmed by collagen peptide mass spectrometry. Only 4% of sequence reads align preferentially to a different species indicating low contamination across species. Moreover, mitochondrial DNA sequences suggest an upper bound of contamination at 5%. Over 45% of reads aligned to the sheep genome, and even this limited sequencing exercise yield 9 and 7% of each sampled sheep genome post filtering, allowing the mapping of genetic affinity to modern British sheep breeds. We conclude that parchment represents an excellent substrate for genomic analyses of historical livestock.
KW  - parchment
KW  - next generation sequencing
KW  - ancient DNA
KW  - ZooMS
KW  - sheep
Y1  - 2015
U6  - https://doi.org/10.1098/rstb.2013.0379
SN  - 0962-8436
SN  - 1471-2970
VL  - 370
IS  - 1660
PB  - Royal Society
CY  - London
ER  -