TY - JOUR A1 - Altmann, Thomas A1 - Brandt, Stephan Peter A1 - Kloska, Sebastian A1 - Kehr, Julia T1 - Using array hybridization to monitore gene expression at the single cell level Y1 - 2002 ER - TY - JOUR A1 - ´Cwiek-Kupczynska, Hanna A1 - Altmann, Thomas A1 - Arend, Daniel A1 - Arnaud, Elizabeth A1 - Chen, Dijun A1 - Cornut, Guillaume A1 - Fiorani, Fabio A1 - Frohmberg, Wojciech A1 - Junker, Astrid A1 - Klukas, Christian A1 - Lange, Matthias A1 - Mazurek, Cezary A1 - Nafissi, Anahita A1 - Neveu, Pascal A1 - van Oeveren, Jan A1 - Pommier, Cyril A1 - Poorter, Hendrik A1 - Rocca-Serra, Philippe A1 - Sansone, Susanna-Assunta A1 - Scholz, Uwe A1 - van Schriek, Marco A1 - Seren, Ümit A1 - Usadel, Bjorn A1 - Weise, Stephan A1 - Kersey, Paul A1 - Krajewski, Pawel T1 - Measures for interoperability of phenotypic data: minimum information requirements and formatting JF - Plant Methods N2 - Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time-consuming experiments, the findings can be fostered by reusing and combining existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. Results: In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a document called "Minimum Information About a Plant Phenotyping Experiment", which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA-Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA-Tab-formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Conclusions: Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data. KW - Data standardisation and formatting KW - Experimental metadata KW - Minimum information recommendations KW - Plant phenotyping KW - Experiment description Y1 - 2016 U6 - https://doi.org/10.1186/s13007-016-0144-4 SN - 1746-4811 VL - 12 PB - BioMed Central CY - London ER - TY - BOOK A1 - Kleger, Heinz A1 - Wetzel, Daniel A1 - Altmann, Stephan A1 - Kerber, Stefan A1 - Mersiovsky, Karen A1 - Leinkauf, Simone T1 - Potsdamer Toleranzedikt : für eine offene und tolerante Stadt der Bürgerschaft N2 - Potsdam hat ein neues Potsdamer Toleranzedikt. Das 100-seitige Edikt ist das Ergebnis eines knapp achtmonatigen Stadtgesprächs, das in Potsdam im Jahr 2008 stattgefunden hat. Oberbürgermeister Jann Jakobs stellte das Buch am 10. Oktober 2008 zusammen mit Projektinitiator Prof. Heinz Kleger, Universität Potsdam, der Öffentlichkeit vor. Es ist anders als das historische "Edikt von Potsdam", kein Erlass von oben, sondern wurde in einem offen angelegten Diskussionsprozess von den Einwohnerinnen und Einwohnern der Stadt Potsdam auf vielfältige Art und Weise gestaltet: auf den stadtweit aufgestellten Diskussionstafeln, in zahlreichen Gesprächen auf Veranstaltungen, in Diskussionsrunden, durch eingesendete Postkarten, erarbeiteten Selbstverpflichtungen und eingebrachten Diskussionsbeiträgen im Internet. Das neue Potsdamer Toleranzedikt besteht aus drei Teilen. Beginnend mit einer Präambel, die den Begriff Toleranz für die Potsdamer und das gemeinsame Zusammenleben beschreibt, wird im ersten Teil ein historischer und aktueller Zusammenhang hergestellt. Der zweite Teil enthält die Ergebnisse des Stadtgesprächs, die detailliert ausgewertet und erläutert wurden. Im dritten Teil wurden die Selbstverpflichtungen unterschiedlichster gesellschaftlicher Akteure aus Potsdam abgebildet. Das Projekt Potsdamer Toleranzedikt ist ein Kooperationsprojekt der Landeshauptstadt Potsdam und des Vereins proWissen Potsdam e.V, unterstützt vom Stifterverband der Deutschen Wissenschaft. KW - Potsdamer Toleranzedikt KW - Toleranz KW - Potsdam KW - Stadtbürgerschaft KW - Edikt KW - tolerance KW - civilsociety KW - Potsdam KW - discussion KW - edict Y1 - 2008 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-24464 ER - TY - GEN A1 - Ćwiek-Kupczyńska, Hanna A1 - Altmann, Thomas A1 - Arend, Daniel A1 - Arnaud, Elizabeth A1 - Chen, Dijun A1 - Cornut, Guillaume A1 - Fiorani, Fabio A1 - Frohmberg, Wojciech A1 - Junker, Astrid A1 - Klukas, Christian A1 - Lange, Matthias A1 - Mazurek, Cezary A1 - Nafissi, Anahita A1 - Neveu, Pascal A1 - van Oeveren, Jan A1 - Pommier, Cyril A1 - Poorter, Hendrik A1 - Rocca-Serra, Philippe A1 - Sansone, Susanna-Assunta A1 - Scholz, Uwe A1 - van Schriek, Marco A1 - Seren, Ümit A1 - Usadel, Björn A1 - Weise, Stephan A1 - Kersey, Paul A1 - Krajewski, Paweł T1 - Measures for interoperability of phenotypic data BT - minimum information requirements and formatting T2 - Plant methods N2 - Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time ‑consuming experiments, the findings can be fostered by reusing and combin‑ ing existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. Results: In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a docu‑ ment called “Minimum Information About a Plant Phenotyping Experiment”, which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA ‑Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA ‑Tab ‑formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Conclusions: Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 450 KW - data standardisation and formatting KW - experimental metadata KW - minimum information recommendations KW - plant phenotyping KW - experiment description Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407299 ER -