TY - JOUR A1 - Zaikin, Alexei A1 - Kurths, Jürgen A1 - Saparin, Peter A1 - Gowin, W. A1 - Prohaska, Steffen T1 - Modeling bone resorption in 2D CT and 3D mu CT images N2 - We study several algorithms to simulate bone mass loss in two-dimensional and three-dimensional computed tomography bone images. The aim is to extrapolate and predict the bone loss, to provide test objects for newly developed structural measures, and to understand the physical mechanisms behind the bone alteration. Our bone model approach differs from those already reported in the literature by two features. First, we work with original bone images, obtained by computed tomography (CT); second, we use structural measures of complexity to evaluate bone resorption and to compare it with the data provided by CT. This gives us the possibility to test algorithms of bone resorption by comparing their results with experimentally found dependencies of structural measures of complexity, as well as to show efficiency of the complexity measures in the analysis of bone models. For two-dimensional images we suggest two algorithms, a threshold algorithm and a virtual slicing algorithm. The threshold algorithm simulates bone resorption on a boundary between bone and marrow, representing an activity of osteoclasts. The virtual slicing algorithm uses a distribution of the bone material between several virtually created slices to achieve statistically correct results, when the bone-marrow transition is not clearly defined. These algorithms have been tested for original CT 10 mm thick vertebral slices and for simulated 10 mm thick slices constructed from ten I mm thick slices. For three-dimensional data, we suggest a variation of the threshold algorithm and apply it to bone images. The results of modeling have been compared with CT images using structural measures of complexity in two- and three-dimensions. This comparison has confirmed credibility of a virtual slicing modeling algorithm for two-dimensional data and a threshold algorithm for three-dimensional data Y1 - 2005 SN - 0218-1274 ER - TY - JOUR A1 - Wessel, Niels A1 - Schwarz, Udo A1 - Saparin, Peter A1 - Kurths, Jürgen T1 - Symbolic dynamics for medical data analysis N2 - Observational data of natural systems, as measured in medical measurements are typically quite different from those obtained in laboratories. Due to the peculiarities of these data, wellknown characteristics, such as power spectra or fractal dimension, often do not provide a suitable description. To study such data, we present here some measures of complexity, which are basing on symbolic dynamics. Firstly, a motivation for using symbolic dynamics and measures of complexity in data analysis based on the logistic map is given and next, two applications to medical data are shown. We demonstrate that symbolic dynamics is a useful tool for the risk assessment of patients after myocardial infarction as well as for the evaluation of th e architecture of human cancellous bone. Y1 - 2002 UR - http://www.agnld.uni-potsdam.de/~shw/Paper/EUROATTRACTOR2000.ps SN - 3-936142-09-2 ER - TY - JOUR A1 - Marwan, Norbert A1 - Kurths, Jürgen A1 - Thomsen, Jesper Skovhus A1 - Felsenberg, Dieter A1 - Saparin, Peter T1 - Three-dimensional quantification of structures in trabecular bone using measures of complexity N2 - The study of pathological changes of bone is an important task in diagnostic procedures of patients with metabolic bone diseases such as osteoporosis as well as in monitoring the health state of astronauts during long-term space flights. The recent availability of high-resolution three-dimensional (3D) imaging of bone challenges the development of data analysis techniques able to assess changes of the 3D microarchitecture of trabecular bone. We introduce an approach based on spatial geometrical properties and define structural measures of complexity for 3D image analysis. These measures evaluate different aspects of organization and complexity of 3D structures, such as complexity of its surface or shape variability. We apply these measures to 3D data acquired by high-resolution microcomputed tomography (mu CT) from human proximal tibiae and lumbar vertebrae at different stages of osteoporotic bone loss. The outcome is compared to the results of conventional static histomorphometry and exhibits clear relationships between the analyzed geometrical features of trabecular bone and loss of bone density, but also indicate that the measures reveal additional information about the structural composition of bone, which were not revealed by the static histomorphometry. Finally, we have studied the dependency of the developed measures of complexity on the spatial resolution of the mu CT data sets. Y1 - 2009 UR - http://pre.aps.org/ U6 - https://doi.org/10.1103/Physreve.79.021903 SN - 1539-3755 ER - TY - JOUR A1 - Saparin, Peter A1 - Huppert, Amit A1 - Stone, L. A1 - Price, C. T1 - El niño chaos : The role of noise and stochastic resonance on the ENSO cycle Y1 - 1998 ER - TY - JOUR A1 - Neiman, Alexander A1 - Saparin, Peter A1 - Stone, L. T1 - Coherence resonance at noisy precursors of bifurcation in nonlinear dynamical systems Y1 - 1997 ER - TY - JOUR A1 - Saparin, Peter A1 - Kurths, Jürgen A1 - Gowin, P. A1 - Felsenberg, D. T1 - Die quantitative Beurteilung trabeculärer Knochenstrukturen der Lendenwirbelkörper durch Meßmethoden der nicht-linearen Dynamik Y1 - 1997 ER - TY - JOUR A1 - Gowin, W. A1 - Kurths, Jürgen A1 - Saparin, Peter A1 - Felsenberg, D. T1 - Measures of complexity and processing of vertebral CT-images Y1 - 1997 SN - 0-7803-4262-3 ER - TY - JOUR A1 - Marwan, Norbert A1 - Beller, Gise A1 - Felsenberg, Dieter A1 - Saparin, Peter A1 - Kurths, Jürgen T1 - quantifying changes in the spatial structure of trabecular bone JF - International journal of bifurcation and chaos : in applied sciences and engineering N2 - We apply recently introduced measures of complexity for the structural quantification of distal tibial bone. For the first time, we are able to investigate the temporal structural alteration of trabecular bone. Based on four patients, we show how the bone may alter due to temporal immobilization. KW - 3D medical image analysis KW - pQCT KW - trabecular bone KW - patient immobilization Y1 - 2012 U6 - https://doi.org/10.1142/S0218127412500277 SN - 0218-1274 VL - 22 IS - 2 PB - World Scientific CY - Singapore ER - TY - JOUR A1 - Schmah, Tanya A1 - Marwan, Norbert A1 - Thomsen, Jesper Skovhus A1 - Saparin, Peter T1 - Long range node-strut analysis of trabecular bone microarchitecture JF - Medical physics : the international journal of medical physics research and practice N2 - Purpose: We present a new morphometric measure of trabecular bone microarchitecture, called mean node strength (NdStr), which is part of a newly developed approach called long range nodestrut analysis. Our general aim is to describe and quantify the apparent "latticelike" microarchitecture of the trabecular bone network. Methods: Similar in some ways to the topological node-strut analysis introduced by Garrahan et al. [J. Microsc. 142, 341-349 (1986)], our method is distinguished by an emphasis on long-range trabecular connectivity. Thus, while the topological classification of a pixel (after skeletonization) as a node, strut, or terminus, can be determined from the 3 x 3 neighborhood of that pixel, our method, which does not involve skeletonization, takes into account a much larger neighborhood. In addition, rather than giving a discrete classification of each pixel as a node, strut, or terminus, our method produces a continuous variable, node strength. The node strength is averaged over a region of interest to produce the mean node strength of the region. Results: We have applied our long range node-strut analysis to a set of 26 high-resolution peripheral quantitative computed tomography (pQCT) axial images of human proximal tibiae acquired 17 mm below the tibial plateau. We found that NdStr has a strong positive correlation with trabecular volumetric bone mineral density (BMD). After an exponential transformation, we obtain a Pearson's correlation coefficient of r - 0.97. Qualitative comparison of images with similar BMD but with very different NdStr values suggests that the latter measure has successfully quantified the prevalence of the "latticelike" microarchitecture apparent in the image. Moreover, we found a strong correlation (r - 0.62) between NdStr and the conventional node-terminus ratio (Nd/Tm) of Garrahan et al. The Nd/Tm ratios were computed using traditional histomorphometry performed on bone biopsies obtained at the same location as the pQCT scans. Conclusions: The newly introduced morphometric measure allows a quantitative assessment of the long-range connectivity of trabecular bone. One advantage of this method is that it is based on pQCT images that can be obtained noninvasively from patients, i.e., without having to obtain a bone biopsy from the patient. KW - trabecular bone KW - osteoporosis KW - structure analysis KW - histomorphometry KW - pQCT Y1 - 2011 U6 - https://doi.org/10.1118/1.3622600 SN - 0094-2405 VL - 38 IS - 9 SP - 5003 EP - 5011 PB - American Association of Physicists in Medicine CY - Melville ER - TY - JOUR A1 - Kopitzki, K. A1 - Warnke, P. C. A1 - Saparin, Peter A1 - Kurths, Jürgen A1 - Timmer, Jens T1 - Comment on "Kullback-Leibler and renormalized entropies: Applications to electroencephalograms of epilepsy patients" Y1 - 2002 ER - TY - JOUR A1 - Gowin, W. A1 - Saparin, Peter A1 - Kurths, Jürgen A1 - Felsenberg, D. T1 - Bone Architecture assessment with Measures of Complexity Y1 - 2001 ER - TY - JOUR A1 - Gowin, W. A1 - Saparin, Peter A1 - Kurths, Jürgen T1 - Bone architecture quantification: Measures of complexity compared to failure lead results Y1 - 2001 ER -