TY - JOUR A1 - Zaikin, Alexey A1 - Kurths, Jürgen T1 - Optimal length transportation hypothesis to model proteasome product size distribution JF - Journal of biological physics : emphasizing physical principles in biological research ; an international journal for the formulation and application of mathematical models in the biological sciences N2 - This paper discusses translocation features of the 20S proteasome in order to explain typical proteasome length distributions. We assume that the protein transport depends significantly on the fragment length with some optimal length which is transported most efficiently. By means of a simple one-channel model, we show that this hypothesis can explain both the one- and the three-peak length distributions found in experiments. A possible mechanism of such translocation is provided by so-called fluctuation-driven transport. KW - proteasome KW - protein translocation KW - stochastic process KW - ratchets Y1 - 2006 U6 - https://doi.org/10.1007/s10867-006-9014-z SN - 0092-0606 VL - 32 IS - 3-4 SP - 231 EP - 243 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Winterhalder, Matthias A1 - Schelter, B A1 - Kurths, Jürgen A1 - Schulze-Borthage, A A1 - Timmer, Jens T1 - Sensitivity and specificity of coherence and phase synchronization analysis N2 - In this Letter, we show that coherence and phase synchronization analysis are sensitive but not specific in detecting the correct class of underlying dynamics. We propose procedures to increase specificity and demonstrate the power of the approach by application to paradigmatic dynamic model systems. (c) 2006 Elsevier B.V. All rights reserved Y1 - 2006 UR - http://www.sciencedirect.com/science/article/pii/S0375960106004002 ( 11.07.2011] U6 - https://doi.org/10.1016/j.physleta.2006.03.018 ER - TY - JOUR A1 - Dana, Syamal Kumar A1 - Blasius, Bernd A1 - Kurths, Jürgen T1 - Experimental evidence of anomalous phase synchronization in two diffusively coupled Chua oscillators N2 - We study the transition to phase synchronization in two diffusively coupled, nonidentical Chua oscillators. In the experiments, depending on the used parameterization, we observe several distinct routes to phase synchronization, including states of either in-phase, out-of-phase, or antiphase synchronization, which may be intersected by an intermediate desynchronization regime with large fluctuations of the frequency difference. Furthermore, we report the first experimental evidence of an anomalous transition to phase synchronization, which is characterized by an initial enlargement of the natural frequency difference with coupling strength. This results in a maximal frequency disorder at intermediate coupling levels, whereas usual phase synchronization via monotonic decrease in frequency difference sets in only for larger coupling values. All experimental results are supported by numerical simulations of two coupled Chua models Y1 - 2006 UR - http://ojps.aip.org/chaos/ U6 - https://doi.org/10.1063/1.2197168 SN - 1054-1500 ER - TY - JOUR A1 - Vasconcelos, D. B. A1 - Lopes, S. R. A1 - Viana, R. L. A1 - Kurths, Jürgen T1 - Spatial recurrence plots N2 - We propose an extension of the recurrence plot concept to perform quantitative analyzes of roughness and disorder of spatial patterns at a fixed time. We introduce spatial recurrence plots (SRPs) as a graphical representation of the pointwise correlation matrix, in terms of a two-dimensional spatial return plot. This technique is applied to the study of complex patterns generated by coupled map lattices, which are characterized by measures of complexity based on SRPs. We show that the complexity measures we propose for SRPs provide a systematic way of investigating the distribution of spatially coherent structures, such as synchronization domains, in lattice profiles. This approach has potential for many more applications, e.g., in surface roughness analyzes Y1 - 2006 UR - http://pre.aps.org/pdf/PRE/v73/i5/e056207 U6 - https://doi.org/10.1103/Physreve.73.056207 ER - TY - JOUR A1 - Baptista, Murilo da Silva A1 - Pereira, Tiago A1 - Kurths, Jürgen T1 - Upper bounds in phase synchronous weak coherent chaotic attractors N2 - An approach is presented for coupled chaotic systems with weak coherent motion, from which we estimate the upper bound value for the absolute phase difference in phase synchronous states. This approach shows that synchronicity in phase implies synchronicity in the time of events, a characteristic explored to derive an equation to detect phase synchronization, based on the absolute difference between the time of these events. We demonstrate the potential use of this approach for the phase coherent and the funnel attractor of the Rossler system, as well as for the spiking/bursting Rulkov map. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/01672789 U6 - https://doi.org/10.1016/j.physd.2006.02.007 SN - 0167-2789 ER - TY - JOUR A1 - Raab, Corinna A1 - Wessel, Niels A1 - Schirdewan, Alexander A1 - Kurths, Jürgen T1 - Large-scale dimension densities for heart rate variability analysis N2 - In this work, we reanalyze the heart rate variability (HRV) data from the 2002 Computers in Cardiology (CiC) Challenge using the concept of large-scale dimension densities and additionally apply this technique to data of healthy persons and of patients with cardiac diseases. The large-scale dimension density (LASDID) is estimated from the time series using a normalized Grassberger-Procaccia algorithm, which leads to a suitable correction of systematic errors produced by boundary effects in the rather large scales of a system. This way, it is possible to analyze rather short, nonstationary, and unfiltered data, such as HRV. Moreover, this method allows us to analyze short parts of the data and to look for differences between day and night. The circadian changes in the dimension density enable us to distinguish almost completely between real data and computer-generated data from the CiC 2002 challenge using only one parameter. In the second part we analyzed the data of 15 patients with atrial fibrillation (AF), 15 patients with congestive heart failure (CHF), 15 elderly healthy subjects (EH), as well as 18 young and healthy persons (YH). With our method we are able to separate completely the AF (rho(mu)(ls)=0.97 +/- 0.02) group from the others and, especially during daytime, the CHF patients show significant differences from the young and elderly healthy volunteers (CHF, 0.65 +/- 0.13; EH, 0.54 +/- 0.05; YH, 0.57 +/- 0.05; p < 0.05 for both comparisons). Moreover, for the CHF patients we find no circadian changes in rho(mu)(ls) (day, 0.65 +/- 0.13; night, 0.66 +/- 0.12; n.s.) in contrast to healthy controls (day, 0.54 +/- 0.05; night, 0.61 +/- 0.05; p=0.002). Correlation analysis showed no statistical significant relation between standard HRV and circadian LASDID, demonstrating a possibly independent application of our method for clinical risk stratification Y1 - 2006 UR - http://pre.aps.org/ U6 - https://doi.org/10.1103/Physreve.73.041907 SN - 1539-3755 ER - TY - JOUR A1 - Anishchenko, Vadim S. A1 - Nikolaev, S A1 - Kurths, Jürgen T1 - Winding number locking on a two-dimensional torus : synchronization of quasiperiodic motions N2 - We propose a new autonomous dynamical system of dimension N=4 that demonstrates the regime of stable two- frequency motions and period-doubling bifurcations of a two-dimensional torus. It is shown that the period-doubling bifurcation of the two-dimensional torus is not followed by the resonance phenomenon, and the two-dimensional ergodic torus undergoes a period-doubling bifurcation. The interaction of two generators is also analyzed. The phenomenon of external and mutual synchronization of two-frequency oscillations is observed, for which winding number locking on a two- dimensional torus takes place Y1 - 2006 UR - http://pre.aps.org/ U6 - https://doi.org/10.1103/Physreve.73.056202 SN - 1539-3755 ER - TY - JOUR A1 - Boccaletti, Stefano A1 - Hwang, Dong-Uk A1 - Chavez, Mario A1 - Amann, Andreas A1 - Kurths, Jürgen A1 - Pecora, Louis M. T1 - Synchronization in dynamical networks : evolution along commutative graphs N2 - Starting from an initial wiring of connections, we show that the synchronizability of a network can be significantly improved by evolving the graph along a time dependent connectivity matrix. We consider the case of connectivity matrices that commute at all times, and compare several approaches to engineer the corresponding commutative graphs. In particular, we show that synchronization in a dynamical network can be achieved even in the case in which each individual commutative graphs does not give rise to synchronized behavior Y1 - 2006 UR - http://pre.aps.org/ U6 - https://doi.org/10.1103/Physreve.74.016102 SN - 1539-3755 ER - TY - JOUR A1 - Thiel, Marco A1 - Romano, Maria Carmen A1 - Kurths, Jürgen T1 - Spurious structures in recurrence plots induced by embedding N2 - In this paper we show that delay embedding produces spurious structures in a recurrence plot (RP) that are not present in the real attractor. We analyze typical sets of simulated data, such as white noise and data from the chaotic Rossler system to show the relevance of this effect. In the second part of the paper we show that the second order Renyi entropy and the correlation dimension are dynamical invariants that can be estimated from Recurrence Plots with arbitrary embedding dimension and delay Y1 - 2006 U6 - https://doi.org/10.1007/s11071-006-2010-9 ER - TY - JOUR A1 - Li, Changpin A1 - Sun, Weigang A1 - Kurths, Jürgen T1 - Synchronization of complex dynamical networks with time delays N2 - In the present paper, two kinds of dynamical complex networks are considered. The first is that elements of every node have different time delays but all nodes in Such networks have the same time-delay vector. The second is that different nodes have different time-delay vectors, and the elements of each node also have different time delays. Corresponding synchronization theorems are established. Numerical examples show the efficiency of the derived theorems. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03784371 U6 - https://doi.org/10.1016/j.physa.2005.07.007 SN - 0378-4371 ER -