TY - JOUR A1 - Olejko, Lydia A1 - Cywinski, Piotr J. A1 - Bald, Ilko T1 - Ion-Selective formation of a guanine quadruplex on DNA origami structures JF - Angewandte Chemie : a journal of the Gesellschaft Deutscher Chemiker ; International edition N2 - DNA origami nanostructures are a versatile tool that can be used to arrange functionalities with high local control to study molecular processes at a single-molecule level. Here, we demonstrate that DNA origami substrates can be used to suppress the formation of specific guanine (G) quadruplex structures from telomeric DNA. The folding of telomeres into G-quadruplex structures in the presence of monovalent cations (e.g. Na+ and K+) is currently used for the detection of K+ ions, however, with insufficient selectivity towards Na+. By means of FRET between two suitable dyes attached to the 3- and 5-ends of telomeric DNA we demonstrate that the formation of G-quadruplexes on DNA origami templates in the presence of sodium ions is suppressed due to steric hindrance. Hence, telomeric DNA attached to DNA origami structures represents a highly sensitive and selective detection tool for potassium ions even in the presence of high concentrations of sodium ions. KW - DNA nanotechnology KW - FRET KW - G-quadruplexes KW - nanostructures KW - self-assembly Y1 - 2015 U6 - https://doi.org/10.1002/anie.201409278 SN - 1433-7851 SN - 1521-3773 VL - 54 IS - 2 SP - 673 EP - 677 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Olejko, Lydia A1 - Cywiński, Piotr J. A1 - Bald, Ilko T1 - An ion-controlled four-color fluorescent telomeric switch on DNA origami structures JF - Nanoscale N2 - The folding of single-stranded telomeric DNA into guanine (G) quadruplexes is a conformational change that plays a major role in sensing and drug targeting. The telomeric DNA can be placed on DNA origami nanostructures to make the folding process extremely selective for K+ ions even in the presence of high Na+ concentrations. Here, we demonstrate that the K+-selective G-quadruplex formation is reversible when using a cryptand to remove K+ from the G-quadruplex. We present a full characterization of the reversible switching between single-stranded telomeric DNA and G-quadruplex structures using Förster resonance energy transfer (FRET) between the dyes fluorescein (FAM) and cyanine3 (Cy3). When attached to the DNA origami platform, the G-quadruplex switch can be incorporated into more complex photonic networks, which is demonstrated for a three-color and a four-color FRET cascade from FAM over Cy3 and Cy5 to IRDye700 with G-quadruplex-Cy3 acting as a switchable transmitter. KW - resonance energy-transfer KW - g-quadruplex KW - quantum dots KW - strand breakage KW - photonic wires KW - 3-color fret KW - nanostructures KW - recognition KW - sensitivity KW - assemblies Y1 - 2016 U6 - https://doi.org/10.1039/C6NR00119J SN - 2040-3372 SN - 2040-3364 VL - 8 SP - 10339 EP - 10347 PB - RSC Publ. CY - Cambridge ER -