TY - JOUR A1 - Zakrevskyy, Yuriy A1 - Cywinski, Piotr A1 - Cywinska, Magdalena A1 - Paasche, Jens A1 - Lomadze, Nino A1 - Reich, Oliver A1 - Löhmannsröben, Hans-Gerd A1 - Santer, Svetlana T1 - Interaction of photosensitive surfactant with DNA and poly acrylic acid JF - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr Y1 - 2014 U6 - https://doi.org/10.1063/1.4862679 SN - 0021-9606 SN - 1089-7690 VL - 140 IS - 4 PB - American Institute of Physics CY - Melville ER - TY - GEN A1 - Węcławski, Marek K. A1 - Tasior, Mariusz A1 - Hammann, Tommy A1 - Cywiński, Piotr J. A1 - Gryko, Daniel T. T1 - From π-expanded coumarins to π-expanded pentacenes N2 - The synthesis of two novel types of π-expanded coumarins has been developed. Modified Knoevenagel bis-condensation afforded 3,9-dioxa-perylene-2,8-diones. Subsequent oxidative aromatic coupling or light driven electrocyclization reaction led to dibenzo-1,7-dioxacoronene-2,8-dione. Unparalleled synthetic simplicity, straightforward purification and superb optical properties have the potential to bring these perylene and coronene analogs towards various applications. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 280 Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-98822 ER - TY - JOUR A1 - Weclawski, Marek K. A1 - Meiling, Till Thomas A1 - Leniak, Arkadiusz A1 - Cywinski, Piotr J. A1 - Gryko, Daniel T. T1 - Planar, Fluorescent Push-Pull System That Comprises Benzofuran and Iminocoumarin Moieties JF - Organic letters N2 - Previously unknown, vertically linked heterocycles comprised of benzofuran and iminocoumarin moieties have been synthesized directly from 1,5-dibenzoyloxyanthraquinone and arylacetonitriles via double Knoevenagel condensation followed by formal HCN elimination. The structural assembly of fully conjugated, electron-rich benzofuran and electron-deficient iminocoumarin is responsible for the strongly polarized nature of these heterocycles which translates into their polarity-sensitive fluorescence. Y1 - 2015 U6 - https://doi.org/10.1021/acs.orglett.5b02042 SN - 1523-7060 SN - 1523-7052 VL - 17 IS - 17 SP - 4252 EP - 4255 PB - American Chemical Society CY - Washington ER - TY - GEN A1 - Tasior, Mariusz A1 - Bald, Ilko A1 - Deperasińska, Irena A1 - Cywiński, Piotr J. A1 - Gryko, Daniel T. T1 - An internal charge transfer-dependent solvent effect in V-shaped azacyanines N2 - New V-shaped non-centrosymmetric dyes, possessing a strongly electron-deficient azacyanine core, have been synthesized based on a straightforward two-step approach. The key step in this synthesis involves palladium-catalysed cross-coupling of dibromo-N,N′-methylene-2,2′-azapyridinocyanines with arylacetylenes. The resulting strongly polarized π-expanded heterocycles exhibit green to orange fluorescence and they strongly respond to changes in solvent polarity. We demonstrate that differently electron-donating peripheral groups have a significant influence on the internal charge transfer, hence on the solvent effect and fluorescence quantum yield. TD-DFT calculations confirm that, in contrast to the previously studied bis(styryl)azacyanines, the proximity of S1 and T2 states calculated for compounds bearing two 4-N,N-dimethylaminophenylethynyl moieties establishes good conditions for efficient intersystem crossing and is responsible for its low fluorescence quantum yield. Non-linear properties have also been determined for new azacyanines and the results show that depending on peripheral groups, the synthesized dyes exhibit small to large two-photon absorption cross sections reaching 4000 GM. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 306 Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-102704 SP - 11714 EP - 11720 ER - TY - JOUR A1 - Tasior, Mariusz A1 - Bald, Ilko A1 - Deperasinska, Irena A1 - Cywinski, Piotr J. A1 - Gryko, Daniel T. T1 - An internal charge transfer-dependent solvent effect in V-shaped azacyanines JF - Organic & biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry Y1 - 2015 U6 - https://doi.org/10.1039/c5ob01633a SN - 1477-0520 SN - 1477-0539 VL - 13 IS - 48 SP - 11714 EP - 11720 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Suriyanarayanan, Subramanian A1 - Cywinski, Piotr J. A1 - Moro, Artur J. A1 - Mohr, Gerhard J. A1 - Kutner, Wlodzimierz ED - Haupt, K T1 - Chemosensors based on molecularly imprinted polymers JF - Topics in current chemistry JF - Topics in Current Chemistry Y1 - 2012 SN - 978-3-642-28421-2 U6 - https://doi.org/10.1007/128_2010_92 SN - 0340-1022 VL - 325 IS - 4 SP - 165 EP - 265 PB - Springer CY - Berlin ER - TY - JOUR A1 - Olejko, Lydia A1 - Cywiński, Piotr J. A1 - Bald, Ilko T1 - An ion-controlled four-color fluorescent telomeric switch on DNA origami structures JF - Nanoscale N2 - The folding of single-stranded telomeric DNA into guanine (G) quadruplexes is a conformational change that plays a major role in sensing and drug targeting. The telomeric DNA can be placed on DNA origami nanostructures to make the folding process extremely selective for K+ ions even in the presence of high Na+ concentrations. Here, we demonstrate that the K+-selective G-quadruplex formation is reversible when using a cryptand to remove K+ from the G-quadruplex. We present a full characterization of the reversible switching between single-stranded telomeric DNA and G-quadruplex structures using Förster resonance energy transfer (FRET) between the dyes fluorescein (FAM) and cyanine3 (Cy3). When attached to the DNA origami platform, the G-quadruplex switch can be incorporated into more complex photonic networks, which is demonstrated for a three-color and a four-color FRET cascade from FAM over Cy3 and Cy5 to IRDye700 with G-quadruplex-Cy3 acting as a switchable transmitter. KW - resonance energy-transfer KW - g-quadruplex KW - quantum dots KW - strand breakage KW - photonic wires KW - 3-color fret KW - nanostructures KW - recognition KW - sensitivity KW - assemblies Y1 - 2016 U6 - https://doi.org/10.1039/C6NR00119J SN - 2040-3372 SN - 2040-3364 VL - 8 SP - 10339 EP - 10347 PB - RSC Publ. CY - Cambridge ER - TY - JOUR A1 - Olejko, Lydia A1 - Cywinski, Piotr J. A1 - Bald, Ilko T1 - Ion-Selective formation of a guanine quadruplex on DNA origami structures JF - Angewandte Chemie : a journal of the Gesellschaft Deutscher Chemiker ; International edition N2 - DNA origami nanostructures are a versatile tool that can be used to arrange functionalities with high local control to study molecular processes at a single-molecule level. Here, we demonstrate that DNA origami substrates can be used to suppress the formation of specific guanine (G) quadruplex structures from telomeric DNA. The folding of telomeres into G-quadruplex structures in the presence of monovalent cations (e.g. Na+ and K+) is currently used for the detection of K+ ions, however, with insufficient selectivity towards Na+. By means of FRET between two suitable dyes attached to the 3- and 5-ends of telomeric DNA we demonstrate that the formation of G-quadruplexes on DNA origami templates in the presence of sodium ions is suppressed due to steric hindrance. Hence, telomeric DNA attached to DNA origami structures represents a highly sensitive and selective detection tool for potassium ions even in the presence of high concentrations of sodium ions. KW - DNA nanotechnology KW - FRET KW - G-quadruplexes KW - nanostructures KW - self-assembly Y1 - 2015 U6 - https://doi.org/10.1002/anie.201409278 SN - 1433-7851 SN - 1521-3773 VL - 54 IS - 2 SP - 673 EP - 677 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Nazir, Rashid A1 - Meiling, Till Thomas A1 - Cywinski, Piotr J. A1 - Gryko, Daniel T. T1 - Synthesis and Optical Properties of alpha,beta-Unsaturated Ketones Bearing a Benzofuran Moiety JF - Asian journal of organic chemistry : an ACES journal N2 - Five pi-expanded alpha,beta-unsaturated ketones have been prepared from a strongly electron-rich benzofuran derivative via Knoevenagel reaction and aldol condensation. The incorporation of two 6-didodecylaminobenzofuran-2-yl groups at the periphery of D-pi-A and D-pi-A-pi-D molecules resulted in dyes with excellent solubility in the majority of organic solvents. In contrast to the majority of alpha,beta-unsaturated ketones, these dyes emit relatively strongly in the red region with a fluorescence quantum yield up to 40%. They also display strong solvatofluorochromism with emission shifting from 570 nm in toluene to 670 nm in CHCl3. Depending on the chemical structure, they two-photon cross-sections (sigma(2)) are up to 1700 GM (1 GM=10(50) cm(4)s photon(-1)). KW - aldol reaction KW - benzofurans KW - fluorescence KW - ketones KW - two-photon absorption Y1 - 2015 U6 - https://doi.org/10.1002/ajoc.201500242 SN - 2193-5807 SN - 2193-5815 VL - 4 IS - 9 SP - 929 EP - 935 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Morgner, Frank A1 - Bennemann, Mark A1 - Cywiński, Piotr J. A1 - Kollosche, Matthias A1 - Górski, Krzysztof A1 - Pietraszkiewicz, Marek A1 - Geßner, André A1 - Löhmannsröben, Hans-Gerd T1 - Elastic FRET sensors for contactless pressure measurement JF - RSC Advances : an international journal to further the chemical sciences N2 - Contactless pressure monitoring based on Forster resonance energy transfer between donor/acceptor pairs immobilized within elastomers is demonstrated. The donor/acceptor energy transfer is employed by dispersing terbium(III) tris[(2-hydroxybenzoyl)-2-aminoethyl] amine complex (LLC, donor) and CdSe/ZnS quantum dots (QD655, acceptor) in styrene-ethylene/buthylene-styrene (SEBS) and poly(dimethylsiloxane) (PDMS). The continuous monitoring of QD luminescence showed a reversible intensity change as the pressure signal is alternated between two stable states indicating a pressure sensitivity of 6350 cps kPa(-1). Time-resolved measurements show the pressure impact on the FRET signal due to an increase of decay time (270 ms up to 420 ms) for the donor signal and parallel drop of decay time (170 mu s to 155 mu s) for the acceptor signal as the net pressure applied. The LLC/QD655 sensors enable a contactless readout as well as space resolved monitoring to enable miniaturization towards smaller integrated stretchable opto-electronics. Elastic FRET sensors can potentially lead to developing profitable analysis systems capable to outdo conventional wired electronic systems (inductive, capacitive, ultrasonic and photoelectric sensors) especially for point-of-care diagnostics, biological monitoring required for wearable electronics. Y1 - 2017 U6 - https://doi.org/10.1039/c7ra06379b SN - 2046-2069 VL - 7 SP - 50578 EP - 50583 PB - RSC Publishing CY - Cambridge ER -