TY  - GEN
A1  - Teif, Vladimir B.
A1  - Cherstvy, Andrey G.
T1  - Chromatin and epigenetics: current biophysical views
T2  - AIMS biophysics
N2  - Recent advances in high-throughput sequencing experiments and their theoretical descriptions have determined fast dynamics of the "chromatin and epigenetics" field, with new concepts appearing at high rate. This field includes but is not limited to the study of DNA-protein-RNA interactions, chromatin packing properties at different scales, regulation of gene expression and protein trafficking in the cell nucleus, binding site search in the crowded chromatin environment and modulation of physical interactions by covalent chemical modifications of the binding partners. The current special issue does not pretend for the full coverage of the field, but it rather aims to capture its development and provide a snapshot of the most recent concepts and approaches. Eighteen open-access articles comprising this issue provide a delicate balance between current theoretical and experimental biophysical approaches to uncover chromatin structure and understand epigenetic regulation, allowing free flow of new ideas and preliminary results.
KW  - chromatin
KW  - epigenetics
KW  - linker histones
KW  - nucleosome
KW  - DNA-protein binding
KW  - histone modifications
KW  - remodelers
KW  - topologically associated domains
KW  - DNA methylation
KW  - DNA supercoiling
Y1  - 2016
U6  - https://doi.org/10.3934/biophy.2016.1.88
SN  - 2377-9098
VL  - 3
SP  - 88
EP  - 98
PB  - American Institute of Mathematical Sciences
CY  - Springfield
ER  - 
TY  - GEN
A1  - Metzler, Ralf
T1  - PROTEIN PHYSICS Forever ageing
T2  - Nature physics
N2  - Single-molecule techniques have long given us insight into the motion and interactions of individual molecules. But simulations now show that the dynamics inside single proteins is not as simple as we thought — and that proteins are forever changing.
Y1  - 2016
U6  - https://doi.org/10.1038/nphys3585
SN  - 1745-2473
SN  - 1745-2481
VL  - 12
SP  - 113
EP  - 114
PB  - Nature Publ. Group
CY  - London
ER  - 
TY  - GEN
A1  - Battiston, Stefano
A1  - Farmer, J. Doyne
A1  - Flache, Andreas
A1  - Garlaschelli, Diego
A1  - Haldane, Andrew G.
A1  - Heesterbeek, Hans
A1  - Hommes, Cars
A1  - Jaeger, Carlo
A1  - May, Robert
A1  - Scheffer, Marten
T1  - COMPLEX SYSTEMS Complexity theory and financial regulation
T2  - Science
N2  - Traditional economic theory could not explain, much less predict, the near collapse of the financial system and its long-lasting effects on the global economy. Since the 2008 crisis, there has been increasing interest in using ideas from complexity theory to make sense of economic and financial markets. Concepts, such as tipping points, networks, contagion, feedback, and resilience have entered the financial and regulatory lexicon, but actual use of complexity models and results remains at an early stage. Recent insights and techniques offer potential for better monitoring and management of highly interconnected economic and financial systems and, thus, may help anticipate and manage future crises.
Y1  - 2016
U6  - https://doi.org/10.1126/science.aad0299
SN  - 0036-8075
SN  - 1095-9203
VL  - 351
SP  - 818
EP  - 819
PB  - American Assoc. for the Advancement of Science
CY  - Washington
ER  - 
TY  - GEN
A1  - Barniske, Andreas
A1  - Oskinova, Lida
A1  - Hamann, Wolf-Rainer
T1  - Two extremely luminous WN stars in the Galactic center with circumstellar emission from dust and gas (vol 486, pg 971, 2008)
T2  - Physical chemistry, chemical physics : a journal of European Chemical Societies
KW  - stars: Wolf-Rayet
KW  - HII regions
KW  - Galaxy: center
KW  - stars: individual: WR 102ka
KW  - stars: individual: WR 102c
KW  - errata, addenda
Y1  - 2016
U6  - https://doi.org/10.1051/0004-6361/200809568e
SN  - 1432-0746
VL  - 587
PB  - EDP Sciences
CY  - Les Ulis
ER  - 
TY  - GEN
A1  - Battiston, Stefano
A1  - Farmer, Doyne
A1  - Flache, Andreas
A1  - Garlaschelli, Diego
A1  - Haldane, Andy
A1  - Heesterbeek, Hans
A1  - Hommes, Cars
A1  - Jaeger, Carlo
A1  - May, Robert
A1  - Scheffer, Marten
T1  - Financial complexity: Accounting for fraud Response
T2  - Science
Y1  - 2016
U6  - https://doi.org/10.1126/science.352.6283.302
SN  - 0036-8075
SN  - 1095-9203
VL  - 352
SP  - 302
EP  - 302
PB  - American Assoc. for the Advancement of Science
CY  - Washington
ER  - 
TY  - GEN
A1  - Levermann, Anders
A1  - Petoukhov, Vladimir
A1  - Schewe, Jacob
A1  - Schellnhuber, Hans Joachim
T1  - Abrupt monsoon transitions as seen in paleorecords can be explained by moisture-advection feedback
T2  - Proceedings of the National Academy of Sciences of the United States of America
Y1  - 2016
U6  - https://doi.org/10.1073/pnas.1603130113
SN  - 0027-8424
VL  - 113
SP  - E2348
EP  - E2349
PB  - National Acad. of Sciences
CY  - Washington
ER  - 
TY  - GEN
A1  - Wuesthoff, Martin
A1  - Sohl, F.
T1  - Obliquity tides have an impact in diurnal tidal stresses on the Moon.
T2  - Macromolecules : a publication of the American Chemical Society
Y1  - 2016
SN  - 1086-9379
SN  - 1945-5100
VL  - 51
SP  - A672
EP  - A672
PB  - Wiley-Blackwell
CY  - Hoboken
ER  - 
TY  - GEN
A1  - Oskinova, Lida
T1  - Preface: X-ray emission from hot stars and their winds
T2  - Advances in space research
Y1  - 2016
U6  - https://doi.org/10.1016/j.asr.2016.06.031
SN  - 0273-1177
SN  - 1879-1948
VL  - 58
SP  - 679
EP  - 679
PB  - Elsevier
CY  - Oxford
ER  - 
TY  - GEN
A1  - Bürger, Andreas
A1  - Magdans, Uta
A1  - Gies, Hermann
T1  - Adsorption of amino acids on the magnetite-(111)-surface: a force field study (vol 19, 851, 2013)
T2  - Journal of molecular modeling
Y1  - 2016
U6  - https://doi.org/10.1007/s00894-016-3124-8
SN  - 1610-2940
SN  - 0948-5023
VL  - 22
PB  - Springer
CY  - New York
ER  - 
TY  - GEN
A1  - Berenstein, Igal
A1  - Beta, Carsten
A1  - De Decker, Yannick
T1  - Comment on "Flow-induced arrest of spatiotemporal chaos and transition to a stationary pattern in the Gray-Scott model"
T2  - Physical review : E, Statistical, nonlinear and soft matter physics
N2  - In this Comment, we review the results of pattern formation in a reaction-diffusion-advection system following the kinetics of the Gray-Scott model. A recent paper by Das [Phys. Rev. E 92, 052914 (2015)] shows that spatiotemporal chaos of the intermittency type can disappear as the advective flow is increased. This study, however, refers to a single point in the space of kinetic parameters of the original Gray-Scott model. Here we show that the wealth of patterns increases substantially as some of these parameters are changed. In addition to spatiotemporal intermittency, defect-mediated turbulence can also be found. In all cases, however, the chaotic behavior is seen to disappear as the advective flow is increased, following a scenario similar to what was reported in our earlier work [I. Berenstein and C. Beta, Phys. Rev. E 86, 056205 (2012)] as well as by Das. We also point out that a similar phenomenon can be found in other reaction-diffusion-advection models, such as the Oregonator model for the Belousov-Zhabotinsky reaction under flow conditions.
Y1  - 2016
U6  - https://doi.org/10.1103/PhysRevE.94.046201
SN  - 2470-0045
SN  - 2470-0053
VL  - 94
PB  - American Physical Society
CY  - College Park
ER  - 
TY  - GEN
A1  - Abramowski, Attila
A1  - Aharonian, Felix A.
A1  - Benkhali, Faical Ait
A1  - Akhperjanian, A. G.
A1  - Angüner, Ekrem Oǧuzhan
A1  - Backes, Michael
A1  - Balenderan, Shangkari
A1  - Balzer, Arnim
A1  - Barnacka, Anna
A1  - Becherini, Yvonne
A1  - Tjus, Julia Becker
A1  - Berge, David
A1  - Bernhard, Sabrina
A1  - Bernlöhr, Konrad
A1  - Birsin, E.
A1  - Biteau, Jonathan
A1  - Böttcher, Markus
A1  - Boisson, Catherine
A1  - Bolmont, J.
A1  - Bordas, Pol
A1  - Bregeon, Johan
A1  - Brun, Francois
A1  - Brun, Pierre
A1  - Bryan, Mark
A1  - Bulik, Tomasz
A1  - Carrigan, Svenja
A1  - Casanova, Sabrina
A1  - Chadwick, Paula M.
A1  - Chakraborty, Nachiketa
A1  - Chalme-Calvet, R.
A1  - Chaves, Ryan C. G.
A1  - Chretien, M.
A1  - Colafrancesco, Sergio
A1  - Cologna, Gabriele
A1  - Conrad, Jan
A1  - Couturier, Claire
A1  - Cui, Yudong
A1  - Davids, Isak Delberth
A1  - Degrange, Bernhard
A1  - Deil, Christoph
A1  - deWilt, P.
A1  - Djannati-Ataï, A.
A1  - Domainko, Wilfried
A1  - Donath, Axel
A1  - Dubus, G.
A1  - Dutson, K.
A1  - Dyks, J.
A1  - Dyrda, M.
A1  - Edwards, Tanya
A1  - Egberts, Kathrin
A1  - Eger, Peter
A1  - Espigat, P.
A1  - Farnier, C.
A1  - Fegan, Stephen
A1  - Feinstein, Fabrice
A1  - Fernandes, Milton Virgilio
A1  - Fernandez, Diane
A1  - Fiasson, A.
A1  - Fontaine, Gerard
A1  - Förster, Andreas
A1  - Fuessling, M.
A1  - Gabici, S.
A1  - Gajdus, M.
A1  - Gallant, Yves A.
A1  - Garrigoux, Tania
A1  - Giavitto, G.
A1  - Giebels, Berrie
A1  - Glicenstein, Jean-Francois
A1  - Gottschall, Daniel
A1  - Grondin, M. -H.
A1  - Grudzinska, M.
A1  - Hadasch, Daniela
A1  - Haeffner, S.
A1  - Hahn, Joachim
A1  - Harris, Jonathan
A1  - Heinzelmann, Götz
A1  - Henri, G.
A1  - Hermann, German
A1  - Hervet, O.
A1  - Hillert, Andreas
A1  - Hinton, James Anthony
A1  - Hofmann, Werner
A1  - Hofverberg, Petter
A1  - Holler, Markus
A1  - Horns, Dieter
A1  - Ivascenko, Alex
A1  - Jacholkowska, A.
A1  - Jahn, C.
A1  - Jamrozy, Marek
A1  - Janiak, M.
A1  - Jankowsky, F.
A1  - Jung-Richardt, I.
A1  - Kastendieck, Max Anton
A1  - Katarzynski, K.
A1  - Katz, U.
A1  - Kaufmann, S.
A1  - Khelifi, B.
A1  - Kieffer, Michel
A1  - Klepser, S.
A1  - Klochkov, Dmitry
A1  - Kluzniak, W.
A1  - Kolitzus, David
A1  - Komin, Nu
A1  - Kosack, Karl
A1  - Krakau, Steffen
A1  - Krayzel, F.
A1  - Krueger, Pat P.
A1  - Laffon, H.
A1  - Lamanna, G.
A1  - Lefaucheur, J.
A1  - Lefranc, Valentin
A1  - Lemiere, A.
A1  - Lemoine-Goumard, M.
A1  - Lenain, J. -P.
A1  - Lohse, Thomas
A1  - Lopatin, A.
A1  - Lu, Chia-Chun
A1  - Marandon, Vincent
A1  - Marcowith, Alexandre
A1  - Marx, Ramin
A1  - Maurin, G.
A1  - Maxted, Nigel
A1  - Mayer, Michael
A1  - McComb, T. J. Lowry
A1  - Mehault, J.
A1  - Meintjes, P. J.
A1  - Menzler, Ulf
A1  - Meyer, M.
A1  - Mitchell, Alison M. W.
A1  - Moderski, R.
A1  - Mohamed, M.
A1  - Mora, K.
A1  - Moulin, Emmanuel
A1  - Murach, Thomas
A1  - de Naurois, Mathieu
A1  - Niemiec, J.
A1  - Nolan, Sam J.
A1  - Oakes, Louise
A1  - Odaka, Hirokazu
A1  - Ohm, S.
A1  - Optiz, Björn
A1  - Ostrowski, Michal
A1  - Oya, I.
A1  - Panter, Michael
A1  - Parsons, R. Daniel
A1  - Arribas, M. Paz
A1  - Pekeur, Nikki W.
A1  - Pelletier, G.
A1  - Petrucci, P. -O.
A1  - Peyaud, B.
A1  - Pita, S.
A1  - Poon, Helen
A1  - Pühlhofer, Gerd
A1  - Punch, M.
A1  - Quirrenbach, A.
A1  - Raab, S.
A1  - Reichardt, I.
A1  - Reimer, Anita
A1  - Reimer, Olaf
A1  - Renaud, Metz
A1  - de los Reyes, Raquel
A1  - Rieger, Frank
A1  - Romoli, C.
A1  - Rosier-Lees, S.
A1  - Rowell, G.
A1  - Rudak, B.
A1  - Rulten, C. B.
A1  - Sahakian, Vardan
A1  - Salek, D.
A1  - Sanchez, David M.
A1  - Santangelo, Andrea
A1  - Schlickeiser, Reinhard
A1  - Schuessler, F.
A1  - Schulz, A.
A1  - Schwanke, Ullrich
A1  - Schwarzburg, S.
A1  - Schwemmer, S.
A1  - Sol, H.
A1  - Spanier, Felix
A1  - Spengler, G.
A1  - Spies, Franziska
A1  - Stawarz, Lukasz
A1  - Steenkamp, Riaan
A1  - Stegmann, Christian
A1  - Stinzing, F.
A1  - Stycz, K.
A1  - Sushch, Iurii
A1  - Tavernet, J. -P.
A1  - Tavernier, T.
A1  - Taylor, A. M.
A1  - Terrier, R.
A1  - Tluczykont, Martin
A1  - Trichard, C.
A1  - Valerius, K.
A1  - van Eldik, C.
A1  - van Soelen, B.
A1  - Vasileiadis, Georges
A1  - Veh, J.
A1  - Venter, Christo
A1  - Viana, Aion
A1  - Vincent, P.
A1  - Vink, Jacco
A1  - Völk, Heinrich J.
A1  - Volpe, Francesca
A1  - Vorster, Martine
A1  - Vuillaume, T.
A1  - Wagner, S. J.
A1  - Wagner, P.
A1  - Wagner, R. M.
A1  - Ward, Martin
A1  - Weidinger, Matthias
A1  - Weitzel, Quirin
A1  - White, R.
A1  - Wierzcholska, A.
A1  - Willmann, P.
A1  - Woernlein, A.
A1  - Wouters, D.
A1  - Yang, Ruizhi
A1  - Zabalza, Victor
A1  - Zaborov, Dmitry
A1  - Zacharias, M.
A1  - Zdziarski, A. A.
A1  - Zech, Alraune
A1  - Zechlin, Hannes -S.
T1  - H.E.S.S. detection of TeV emission from the interaction region between the supernova remnant G349.7+0.2 and a molecular cloud (vol 574, A100, 2015)
T2  - Astronomy and astrophysics : an international weekly journal
KW  - gamma rays: general
KW  - ISM: supernova remnants
KW  - ISM: clouds
KW  - errata, addenda
Y1  - 2015
U6  - https://doi.org/10.1051/0004-6361/201425070e
SN  - 1432-0746
VL  - 580
PB  - EDP Sciences
CY  - Les Ulis
ER  - 
TY  - GEN
A1  - Spahn, Frank
A1  - Seiss, Martin
T1  - Charges dropped
T2  - Nature physics
Y1  - 2015
SN  - 1745-2473
SN  - 1745-2481
VL  - 11
IS  - 9
SP  - 709
EP  - 710
PB  - Nature Publ. Group
CY  - London
ER  - 
TY  - GEN
A1  - Komarov, Maxim
A1  - Pikovskij, Arkadij
T1  - The Kuramoto model of coupled oscillators with a bi-harmonic coupling function (vol 289, pg 18, 2014)
T2  - Physica :D, Nonlinear phenomena
Y1  - 2015
U6  - https://doi.org/10.1016/j.physd.2015.11.001
SN  - 0167-2789
SN  - 1872-8022
VL  - 313
SP  - 117
EP  - 117
PB  - Elsevier
CY  - Amsterdam
ER  - 
TY  - GEN
A1  - Eschenlohr, Andrea
A1  - Battiato, Mario
A1  - Maldonado, P.
A1  - Pontius, N.
A1  - Kachel, T.
A1  - Holldack, K.
A1  - Mitzner, Rolf
A1  - Föhlisch, Alexander
A1  - Oppeneer, P. M.
A1  - Stamm, Christian
T1  - Optical excitation of thin magnetic layers in multilayer structures Reply
T2  - Nature materials
Y1  - 2014
U6  - https://doi.org/10.1038/nmat3851
SN  - 1476-1122
SN  - 1476-4660
VL  - 13
IS  - 2
SP  - 102
EP  - 103
PB  - Nature Publ. Group
CY  - London
ER  - 
TY  - GEN
A1  - Liermann, Angelika
A1  - Hamann, Wolf-Rainer
A1  - Oskinova, Lida
T1  - The quintuplet cluster III. Hertzsprung-Russell diagram and cluster age (vol 540, pg A14, 2012)
T2  - Astronomy and astrophysics : an international weekly journal
KW  - open clusters and associations: individual: Quintuplet
KW  - infrared: stars
KW  - stars: early-type
KW  - stars: late-type
KW  - Hertzsprung-Russell and C-M diagrams
KW  - errata, addenda
Y1  - 2014
U6  - https://doi.org/10.1051/0004-6361/201117534e
SN  - 0004-6361
SN  - 1432-0746
VL  - 563
PB  - EDP Sciences
CY  - Les Ulis
ER  - 
TY  - GEN
A1  - Talukder, Srijeeta
A1  - Sen, Shrabani
A1  - Chakraborti, Prantik
A1  - Metzler, Ralf
A1  - Banik, Suman K.
A1  - Chaudhury, Pinaki
T1  - Breathing dynamics based parameter sensitivity analysis of hetero-polymeric DNA
T2  - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr
N2  - We study the parameter sensitivity of hetero-polymeric DNA within the purview of DNA breathing dynamics. The degree of correlation between the mean bubble size and the model parameters is estimated for this purpose for three different DNA sequences. The analysis leads us to a better understanding of the sequence dependent nature of the breathing dynamics of hetero-polymeric DNA. Out of the 14 model parameters for DNA stability in the statistical Poland-Scheraga approach, the hydrogen bond interaction epsilon(hb)(AT) for an AT base pair and the ring factor. turn out to be the most sensitive parameters. In addition, the stacking interaction epsilon(st)(TA-TA) for an TA-TA nearest neighbor pair of base-pairs is found to be the most sensitive one among all stacking interactions. Moreover, we also establish that the nature of stacking interaction has a deciding effect on the DNA breathing dynamics, not the number of times a particular stacking interaction appears in a sequence. We show that the sensitivity analysis can be used as an effective measure to guide a stochastic optimization technique to find the kinetic rate constants related to the dynamics as opposed to the case where the rate constants are measured using the conventional unbiased way of optimization.
Y1  - 2014
U6  - https://doi.org/10.1063/1.4871297
SN  - 0021-9606
SN  - 1089-7690
VL  - 140
IS  - 14
PB  - American Institute of Physics
CY  - Melville
ER  - 
TY  - GEN
A1  - Abramowski, Attila
A1  - Aharonian, Felix A.
A1  - Benkhali, Faical  Ait
A1  - Akhperjanian, A. G.
A1  - Angüner, Ekrem Oǧuzhan
A1  - Anton, Gisela
A1  - Balenderan, Shangkari
A1  - Balzer, Arnim
A1  - Barnacka, Anna
A1  - Becherini, Yvonne
A1  - Tjus, J. Becker
A1  - Bernlöhr, K.
A1  - Birsin, E.
A1  - Bissaldi, E.
A1  - Biteau, Jonathan
A1  - Boettcher, Markus
A1  - Boisson, Catherine
A1  - Bolmont, J.
A1  - Bordas, Pol
A1  - Brucker, J.
A1  - Brun, Francois
A1  - Brun, Pierre
A1  - Bulik, Tomasz
A1  - Carrigan, Svenja
A1  - Casanova, Sabrina
A1  - Cerruti, M.
A1  - Chadwick, Paula M.
A1  - Chalme-Calvet, R.
A1  - Chaves, Ryan C. G.
A1  - Cheesebrough, A.
A1  - Chretien, M.
A1  - Colafrancesco, Sergio
A1  - Cologna, Gabriele
A1  - Conrad, Jan
A1  - Couturier, C.
A1  - Cui, Y.
A1  - Dalton, M.
A1  - Daniel, M. K.
A1  - Davids, I. D.
A1  - Degrange, B.
A1  - Deil, C.
A1  - deWilt, P.
A1  - Dickinson, H. J.
A1  - Djannati-Ataï, A.
A1  - Domainko, W.
A1  - Dubus, G.
A1  - Dutson, K.
A1  - Dyks, J.
A1  - Dyrda, M.
A1  - Edwards, T.
A1  - Egberts, Kathrin
A1  - Eger, P.
A1  - Espigat, P.
A1  - Farnier, C.
A1  - Fegan, S.
A1  - Feinstein, F.
A1  - Fernandes, M. V.
A1  - Fernandez, D.
A1  - Fiasson, A.
A1  - Fontaine, G.
A1  - Foerster, A.
A1  - Fuessling, M.
A1  - Gajdus, M.
A1  - Gallant, Y. A.
A1  - Garrigoux, T.
A1  - Giavitto, G.
A1  - Giebels, B.
A1  - Glicenstein, J. F.
A1  - Grondin, M. -H.
A1  - Grudzinska, M.
A1  - Haeffner, S.
A1  - Hahn, J.
A1  - Harris, J.
A1  - Heinzelmann, G.
A1  - Henri, G.
A1  - Hermann, G.
A1  - Hervet, O.
A1  - Hillert, A.
A1  - Hinton, James Anthony
A1  - Hofmann, W.
A1  - Hofverberg, P.
A1  - Holler, M.
A1  - Horns, D.
A1  - Jacholkowska, A.
A1  - Jahn, C.
A1  - Jamrozy, M.
A1  - Janiak, M.
A1  - Jankowsky, F.
A1  - Jung, I.
A1  - Kastendieck, M. A.
A1  - Katarzynski, K.
A1  - Katz, U.
A1  - Kaufmann, S.
A1  - Khelifi, B.
A1  - Kieffer, M.
A1  - Klepser, S.
A1  - Klochkov, D.
A1  - Kluzniak, W.
A1  - Kneiske, T.
A1  - Kolitzus, D.
A1  - Komin, Nu.
A1  - Kosack, K.
A1  - Krakau, S.
A1  - Krayzel, F.
A1  - Krueger, P. P.
A1  - Laffon, H.
A1  - Lamanna, G.
A1  - Lefaucheur, J.
A1  - Lemiere, A.
A1  - Lemoine-Goumard, M.
A1  - Lenain, J. -P.
A1  - Lennarz, D.
A1  - Lohse, T.
A1  - Lopatin, A.
A1  - Lu, C. -C.
A1  - Marandon, V.
A1  - Marcowith, Alexandre
A1  - Marx, R.
A1  - Maurin, G.
A1  - Maxted, N.
A1  - Mayer, Michael
A1  - McComb, T. J. L.
A1  - Mehault, J.
A1  - Meintjes, P. J.
A1  - Menzler, U.
A1  - Meyer, M.
A1  - Moderski, R.
A1  - Mohamed, M.
A1  - Moulin, Emmanuel
A1  - Murach, T.
A1  - Naumann, C. L.
A1  - de Naurois, M.
A1  - Niemiec, J.
A1  - Nolan, S. J.
A1  - Oakes, L.
A1  - Ohm, S.
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KW  - errata, addenda
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PB  - Oxford Univ. Press
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