TY - JOUR A1 - Joulain, Karl A1 - Ben-Abdallah, Philippe A1 - Chapuis, Pierre-Olivier A1 - De Wilde, Y. A1 - Babuty, A. A1 - Henkel, Carsten T1 - Strong tip-sample coupling in thermal radiation scanning tunneling microscopy JF - Journal of quantitative spectroscopy & radiative transfer KW - Near-field thermal radiation KW - Infrared radiation KW - Local density of states KW - Scanning near-field optical microscopy KW - Tip-sample interactions KW - Local spectroscopy Y1 - 2014 U6 - https://doi.org/10.1016/j.jqsrt.2013.12.006 SN - 0022-4073 SN - 1879-1352 VL - 136 SP - 1 EP - 15 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Miedema, P. S. A1 - Beye, Martin A1 - Koennecke, R. A1 - Schiwietz, G. A1 - Föhlisch, Alexander T1 - The angular- and crystal-momentum transfer through electron-phonon coupling in silicon and silicon-carbide: similarities and differences JF - New journal of physics : the open-access journal for physics N2 - Electron-phonon scattering has been studied for silicon carbide (6H-SiC) with resonant inelastic x-ray scattering at the silicon 2p edge. The observed electron-phonon scattering yields a crystal momentum transfer rate per average phonon in 6H-SiC of 1.8 fs(-1) while it is 0.2 fs(-1) in crystalline silicon. The angular momentum transfer rate per average phonon for 6H-SiC is 0.1 fs(-1), which is much higher than 0.0035 fs(-1) obtained for crystalline silicon in a previous study. The higher electron-phonon scattering rates in 6H-SiC are a result of the larger electron localization at the silicon atoms in 6H-SiC as compared to crystalline silicon. While delocalized valence electrons can screen effectively (part of) the electron-phonon interaction, this effect is suppressed for 6H-SiC in comparison to crystalline silicon. Smaller contributions to the difference in electron-phonon scattering rates between 6H-SiC and silicon arise from the lower atomic mass of carbon versus silicon and the difference in local symmetry. KW - electron-phonon scattering KW - 6H-SiC KW - RIXS Y1 - 2014 U6 - https://doi.org/10.1088/1367-2630/16/9/093056 SN - 1367-2630 VL - 16 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Godec, Aljaz A1 - Bauer, Maximilian A1 - Metzler, Ralf T1 - Collective dynamics effect transient subdiffusion of inert tracers in flexible gel networks JF - New journal of physics : the open-access journal for physics N2 - Based on extensive Brownian dynamics simulations we study the thermal motion of a tracer bead in a cross-linked, flexible gel in the limit when the tracer particle size is comparable to or even larger than the equilibrium mesh size of the gel. The analysis of long individual trajectories of the tracer demonstrates the existence of pronounced transient anomalous diffusion. From the time averaged mean squared displacement and the time averaged van Hove correlation functions we elucidate the many-body origin of the non-Brownian tracer bead dynamics. Our results shed new light onto the ongoing debate over the physical origin of steric tracer interactions with structured environments. KW - anomalous diffusion KW - gel network KW - van Hove correlation Y1 - 2014 U6 - https://doi.org/10.1088/1367-2630/16/9/092002 SN - 1367-2630 VL - 16 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Baushev, Anton N. T1 - Relaxation of dark matter halos: how to match observational data? JF - Astronomy and astrophysics : an international weekly journal N2 - We show that moderate energy relaxation in the formation of dark matter halos invariably leads to profiles that match those observed in the central regions of galaxies. The density profile of the central region is universal and insensitive to either the seed perturbation shape or the details of the relaxation process. The profile has a central core; the multiplication of the central density by the core radius is almost independent of the halo mass, in accordance with observations. In the core area the density distribution behaves as an Einasto profile with low index (n similar to 0.5); it has an extensive region with rho proportional to r(-2) at larger distances. This is exactly the shape that observations suggest for the central region of galaxies. On the other hand, this shape does not fit the galaxy cluster profiles. A possible explanation of this fact is that the relaxation is violent in the case of galaxy clusters; however, it is not violent enough when galaxies or smaller dark matter structures are considered. We discuss the reasons for this. KW - dark matter KW - Galaxy: structure KW - Galaxy: formation KW - astroparticle physics KW - methods: analytical Y1 - 2014 U6 - https://doi.org/10.1051/0004-6361/201322730 SN - 0004-6361 SN - 1432-0746 VL - 569 PB - EDP Sciences CY - Les Ulis ER - TY - JOUR A1 - Kliem, Bernhard A1 - Toeroek, Tibor A1 - Titov, Viacheslav S. A1 - Lionello, Roberto A1 - Linker, Jon A. A1 - Liu, Rui A1 - Liu, Chang A1 - Wang, Haimin T1 - Slow rise and partial eruption of a double-decker filament. II. A double flux rope model JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - Force-free equilibria containing two vertically arranged magnetic flux ropes of like chirality and current direction are considered as a model for split filaments/prominences and filament-sigmoid systems. Such equilibria are constructed analytically through an extension of the methods developed in Titov & Demoulin and numerically through an evolutionary sequence including shear flows, flux emergence, and flux cancellation in the photospheric boundary. It is demonstrated that the analytical equilibria are stable if an external toroidal (shear) field component exceeding a threshold value is included. If this component decreases sufficiently, then both flux ropes turn unstable for conditions typical of solar active regions, with the lower rope typically becoming unstable first. Either both flux ropes erupt upward, or only the upper rope erupts while the lower rope reconnects with the ambient flux low in the corona and is destroyed. However, for shear field strengths staying somewhat above the threshold value, the configuration also admits evolutions which lead to partial eruptions with only the upper flux rope becoming unstable and the lower one remaining in place. This can be triggered by a transfer of flux and current from the lower to the upper rope, as suggested by the observations of a split filament in Paper I. It can also result from tether-cutting reconnection with the ambient flux at the X-type structure between the flux ropes, which similarly influences their stability properties in opposite ways. This is demonstrated for the numerically constructed equilibrium. KW - instabilities KW - magnetohydrodynamics (MHD) KW - Sun: coronal mass ejections (CMEs) KW - Sun: filaments, prominences KW - Sun: flares Y1 - 2014 U6 - https://doi.org/10.1088/0004-637X/792/2/107 SN - 0004-637X SN - 1538-4357 VL - 792 IS - 2 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Goychuk, Igor A1 - Kharchenko, Vasyl O. T1 - Anomalous features of diffusion in corrugated potentials with spatial correlations: Faster than normal, and other surprises JF - Physical review letters N2 - Normal diffusion in corrugated potentials with spatially uncorrelated Gaussian energy disorder famously explains the origin of non-Arrhenius exp[-sigma(2)/(k(B)T(2))] temperature dependence in disordered systems. Here we show that unbiased diffusion remains asymptotically normal also in the presence of spatial correlations decaying to zero. However, because of a temporal lack of self-averaging, transient subdiffusion emerges on the mesoscale, and it can readily reach macroscale even for moderately strong disorder fluctuations of sigma similar to 4 - 5k(B)T. Because of its nonergodic origin, such subdiffusion exhibits a large scatter in single-trajectory averages. However, at odds with intuition, it occurs essentially faster than one expects from the normal diffusion in the absence of correlations. We apply these results to diffusion of regulatory proteins on DNA molecules and predict that such diffusion should be anomalous, but much faster than earlier expected on a typical length of genes for a realistic energy disorder of several room k(B)T, or merely 0.05-0.075 eV. Y1 - 2014 U6 - https://doi.org/10.1103/PhysRevLett.113.100601 SN - 0031-9007 SN - 1079-7114 VL - 113 IS - 10 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Winkler, Roland G. A1 - Cherstvy, Andrey G. ED - Muller, M. T1 - Strong and weak polyelectrolyte adsorption onto oppositely charged curved surfaces JF - Advances in polymer science JF - Advances in Polymer Science N2 - Polyelectrolytes are macromolecules composed of charged monomers and exhibit unique properties due to the interplay of their flexibility and electrostatic interactions. In solution, they are attracted to oppositely charged surfaces and interfaces and exhibit a transition to an adsorbed state when certain conditions are met concerning the charge densities of the polymer and surface and the properties of the solution. In this review, we discuss two limiting cases for adsorption of flexible polyelectrolytes on curved surfaces: weak and strong adsorption. In the first case, adsorption is strongly influenced by the entropic degrees of freedom of a flexible polyelectrolyte. By contrast, in the strong adsorption limit, electrostatic interactions dominate, which leads to particular adsorption patterns, specifically on spherical surfaces. We discuss the corresponding theoretical approaches, applying a mean-field description for the polymer and the polymer-surface interaction. For weak adsorption, we discuss the critical adsorption behavior by exactly solvable models for planar and spherical geometries and a generic approximation scheme, which is additionally applied to cylindrical surfaces. For strong adsorption, we investigate various polyelectrolyte patterns on cylinders and spheres and evaluate their stability. The results are discussed in the light of experimental results, mostly of DNA adsorption experiments. Y1 - 2014 SN - 978-3-642-40734-5; 978-3-642-40733-8 U6 - https://doi.org/10.1007/12_2012_183 SN - 0065-3195 VL - 255 SP - 1 EP - 56 PB - Springer CY - Berlin ER - TY - JOUR A1 - de Carvalho, Sidney J. A1 - Metzler, Ralf A1 - Cherstvy, Andrey G. T1 - Critical adsorption of polyelectrolytes onto charged Janus nanospheres JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - Based on extensive Monte Carlo simulations and analytical considerations we study the electrostatically driven adsorption of flexible polyelectrolyte chains onto charged Janus nanospheres. These net-neutral colloids are composed of two equally but oppositely charged hemispheres. The critical binding conditions for polyelectrolyte chains are analysed as function of the radius of the Janus particle and its surface charge density, as well as the salt concentration in the ambient solution. Specifically for the adsorption of finite-length polyelectrolyte chains onto Janus nanoparticles, we demonstrate that the critical adsorption conditions drastically differ when the size of the Janus particle or the screening length of the electrolyte are varied. We compare the scaling laws obtained for the adsorption-desorption threshold to the known results for uniformly charged spherical particles, observing significant disparities. We also contrast the changes to the polyelectrolyte chain conformations close to the surface of the Janus nanoparticles as compared to those for simple spherical particles. Finally, we discuss experimentally relevant physicochemical systems for which our simulations results may become important. In particular, we observe similar trends with polyelectrolyte complexation with oppositely but heterogeneously charged proteins. Y1 - 2014 U6 - https://doi.org/10.1039/c4cp02207f SN - 1463-9076 SN - 1463-9084 VL - 16 IS - 29 SP - 15539 EP - 15550 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Palyulin, Vladimir V. A1 - Chechkin, Aleksei V. A1 - Metzler, Ralf T1 - Space-fractional Fokker-Planck equation and optimization of random search processes in the presence of an external bias JF - Journal of statistical mechanics: theory and experiment N2 - Based on the space-fractional Fokker-Planck equation with a delta-sink term, we study the efficiency of random search processes based on Levy flights with power-law distributed jump lengths in the presence of an external drift, for instance, an underwater current, an airflow, or simply the preference of the searcher based on prior experience. While Levy flights turn out to be efficient search processes when the target is upstream relative to the starting point, in the downstream scenario, regular Brownian motion turns out to be advantageous. This is caused by the occurrence of leapovers of Levy flights, due to which Levy flights typically overshoot a point or small interval. Studying the solution of the fractional Fokker-Planck equation, we establish criteria when the combination of the external stream and the initial distance between the starting point and the target favours Levy flights over the regular Brownian search. Contrary to the common belief that Levy flights with a Levy index alpha = 1 (i.e. Cauchy flights) are optimal for sparse targets, we find that the optimal value for alpha may range in the entire interval (1, 2) and explicitly include Brownian motion as the most efficient search strategy overall. KW - driven diffusive systems (theory) KW - fluctuations (theory) KW - stochastic processes (theory) KW - diffusion Y1 - 2014 U6 - https://doi.org/10.1088/1742-5468/2014/11/P11031 SN - 1742-5468 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Heuer, Axel A1 - Raabe, S. A1 - Menzel, Ralf T1 - Phase memory across two single-photon interferometers including wavelength conversion JF - Physical review : A, Atomic, molecular, and optical physics N2 - Spontaneous parametric down-conversion (SPDC) in a nonlinear crystal generates two single photons (signal and idler) with random phases. Thus, no first-order interference between them occurs. However, coherence can be induced in a cascaded setup of two crystals if, e.g., the idler modes of both crystals are aligned to be indistinguishable. Due to the effect of phase memory it is found that the first-order interference of the signal beams can be controlled by the phase delay between the pump beams. Even for pump photon delays much larger than the coherence length of the SPDC photons, the visibility is above 90%. The high visibilities reported here prove an almost perfect phase memory effect across the two interferometers for the pump and the signal photon modes. Y1 - 2014 U6 - https://doi.org/10.1103/PhysRevA.90.045803 SN - 1050-2947 SN - 1094-1622 VL - 90 IS - 4 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Gerhardt, Matthias A1 - Ecke, Mary A1 - Walz, Michael A1 - Stengl, Andreas A1 - Beta, Carsten A1 - Gerisch, Günther T1 - Actin and PIP3 waves in giant cells reveal the inherent length scale of an excited state JF - Journal of cell science N2 - The membrane and actin cortex of a motile cell can autonomously differentiate into two states, one typical of the front, the other of the tail. On the substrate-attached surface of Dictyostelium discoideum cells, dynamic patterns of front-like and tail-like states are generated that are well suited to monitor transitions between these states. To image large-scale pattern dynamics independently of boundary effects, we produced giant cells by electric-pulse-induced cell fusion. In these cells, actin waves are coupled to the front and back of phosphatidylinositol (3,4,5)-trisphosphate (PIP3)-rich bands that have a finite width. These composite waves propagate across the plasma membrane of the giant cells with undiminished velocity. After any disturbance, the bands of PIP3 return to their intrinsic width. Upon collision, the waves locally annihilate each other and change direction; at the cell border they are either extinguished or reflected. Accordingly, expanding areas of progressing PIP3 synthesis become unstable beyond a critical radius, their center switching from a front-like to a tail-like state. Our data suggest that PIP3 patterns in normal-sized cells are segments of the self-organizing patterns that evolve in giant cells. KW - Actin waves KW - PIP3 signals KW - Excitable systems KW - Cell polarity KW - Cell fusion Y1 - 2014 U6 - https://doi.org/10.1242/jcs.156000 SN - 0021-9533 SN - 1477-9137 VL - 127 IS - 20 SP - 4507 EP - 4517 PB - Company of Biologists Limited CY - Cambridge ER - TY - JOUR A1 - Goychuk, Igor T1 - Life and death of stationary linear response in anomalous continuous time random walk dynamics JF - Communications in theoretical physics : a series journal of the Chinese Physical Society (A) N2 - Linear theory of stationary response in systems at thermal equilibrium requires to find equilibrium correlation function of unperturbed responding system. Studies of the response of the systems exhibiting anomalously slow dynamics are often based on the continuous time random walk description (CTRW) with divergent mean waiting times. The bulk of the literature on anomalous response contains linear response functions like one by Cole-Cole calculated from such a CTRW theory and applied to systems at thermal equilibrium. Here we show within a fairly simple and general model that for the systems with divergent mean waiting times the stationary response at thermal equilibrium is absent, in accordance with some recent studies. The absence of such stationary response (or dying to zero non-stationary response in aging experiments) would confirm CTRW with divergent mean waiting times as underlying physical relaxation mechanism, but reject it otherwise. We show that the absence of stationary response is closely related to the breaking of ergodicity of the corresponding dynamical variable. As an important new result, we derive a generalized Cole-Cole response within ergodic CTRW dynamics with finite waiting time. Moreover, we provide a physically reasonable explanation of the origin and wide presence of 1/f noise in condensed matter for ergodic dynamics close to normal, rather than strongly deviating. KW - random walks KW - anomalous response and relaxation KW - stationarity KW - aging KW - 1/f noise Y1 - 2014 SN - 0253-6102 SN - 1572-9494 VL - 62 IS - 4 SP - 497 EP - 504 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Meibohm, Jan A1 - Schreck, Simon A1 - Wernet, Philippe T1 - Temperature dependent soft x-ray absorption spectroscopy of liquids JF - Review of scientific instruments : a monthly journal devoted to scientific instruments, apparatus, and techniques N2 - A novel sample holder is introduced which allows for temperature dependent soft x-ray absorption spectroscopy of liquids in transmission mode. The setup is based on sample cells with x-ray transmissive silicon nitride windows. A cooling circuit allows for temperature regulation of the sample liquid between -10 degrees C and +50 degrees C. The setup enables to record soft x-ray absorption spectra of liquids in transmission mode with a temperature resolution of 0.5K and better. Reliability and reproducibility of the spectra are demonstrated by investigating the characteristic temperature-induced changes in the oxygen K-edge x-ray absorption spectrum of liquid water. These are compared to the corresponding changes in the oxygen K-edge spectra from x-ray Raman scattering. (C) 2014 AIP Publishing LLC. Y1 - 2014 U6 - https://doi.org/10.1063/1.4896977 SN - 0034-6748 SN - 1089-7623 VL - 85 IS - 10 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Micciulla, Samantha A1 - Dodoo, Samuel A1 - Chevigny, Chloe A1 - Laschewsky, André A1 - von Klitzing, Regine T1 - Short versus long chain polyelectrolyte multilayers: a direct comparison of self-assembly and structural properties JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - Successful layer-by-layer (LbL) growth of short chain (similar to 30 repeat units per chain) poly(sodium styrene sulfonate) (PSS)-poly(diallyl dimethylammonium chloride) (PDADMAC) multilayers is presented for the first time and compared with the growth of equivalent long chain polyelectrolyte multilayers (PEMs). A detailed study performed by quartz crystal microbalance with dissipation (QCM-D) is carried out and three main processes are identified: (i) initial mass uptake, (ii) adsorption desorption during layer equilibration and (iii) desorption during rinsing. In contrast to the high stability and strong layer increment of high molecular weight (HMW) PEMs, layer degradation characterizes low molecular weight (LMW) multilayers. In particular, two different instability phenomena are observed: a constant decrease of sensed mass during equilibration after PDADMAC adsorption, and a strong mass toss by salt-free rinsing after PSS adsorption. Yet, an increase of salt concentration leads to much stronger layer growth. First, when the rinsing medium is changed from pure water to 0.1 M NaCl, the mass loss during rinsing is reduced, irrespective of molecular weight. Second, an increase in salt concentration in the LMW PE solutions causes a larger increment during the initial adsorption step, with no effect on the rinsing. Finally, the mechanical properties of the two systems are extracted from the measured frequency and dissipation shifts, as they offer a deeper insight into the multilayer structures depending on chain length and outermost layer. The paper enriches the field of PE assembly by presenting the use of very short PE chains to form multilayers and elucidates the role of preparation conditions to overcome the limitation of layer stability. Y1 - 2014 U6 - https://doi.org/10.1039/c4cp03439b SN - 1463-9076 SN - 1463-9084 VL - 16 IS - 40 SP - 21988 EP - 21998 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Chu, X. -L. A1 - Brenner, Thomas J. K. A1 - Chen, X. -W. A1 - Ghosh, Y. A1 - Hollingsworth, J. A. A1 - Sandoghdar, Vahid A1 - Goetzinger, S. T1 - Experimental realization of an optical antenna designed for collecting 99% of photons from a quantum emitter JF - Optica N2 - A light source that emits single photons at well-defined times and into a well-defined mode would be a decisive asset for quantum information processing, quantum metrology, and sub-shot-noise detection of absorption. One of the central challenges in the realization of such a deterministic device based on a single quantum emitter concerns the collection of the photons, which are radiated into a 4 pi solid angle. Here, we present the fabrication and characterization of an optical antenna designed to convert the dipolar radiation of an arbitrarily oriented quantum emitter to a directional beam with more than 99% efficiency. Our approach is extremely versatile and can be used for more efficient detection of nanoscopic emitters ranging from semiconductor quantum dots to dye molecules, color centers, or rare-earth ions in various environments. Having addressed the issue of collection efficiency, we also discuss the photophysical limitations of the existing quantum emitters for the realization of a deterministic single-photon source. (C) 2014 Optical Society of America Y1 - 2014 U6 - https://doi.org/10.1364/OPTICA.1.000203 SN - 2334-2536 VL - 1 IS - 4 SP - 203 EP - 208 PB - Optical Society of America CY - Washington ER - TY - JOUR A1 - Nezhadhaghighi, M. Ghasemi A1 - Chechkin, Aleksei V. A1 - Metzler, Ralf T1 - Numerical approach to unbiased and driven generalized elastic model JF - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr N2 - From scaling arguments and numerical simulations, we investigate the properties of the generalized elastic model (GEM) that is used to describe various physical systems such as polymers, membranes, single-file systems, or rough interfaces. We compare analytical and numerical results for the subdiffusion exponent beta characterizing the growth of the mean squared displacement <(delta h)(2)> of the field h described by the GEM dynamic equation. We study the scaling properties of the qth order moments with time, finding that the interface fluctuations show no intermittent behavior. We also investigate the ergodic properties of the process h in terms of the ergodicity breaking parameter and the distribution of the time averaged mean squared displacement. Finally, we study numerically the driven GEM with a constant, localized perturbation and extract the characteristics of the average drift for a tagged probe. Y1 - 2014 U6 - https://doi.org/10.1063/1.4858425 SN - 0021-9606 SN - 1089-7690 VL - 140 IS - 2 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Emelianova, Yulia P. A1 - Kuznetsov, A. P. A1 - Turukina, Ludmila V. T1 - Quasi-periodic bifurcations and "amplitude death" in low-dimensional ensemble of van der Pol oscillators JF - Modern physics letters : A, Particles and fields, gravitation, cosmology, nuclear physics N2 - The dynamics of the four dissipatively coupled van der Pol oscillators is considered. Lyapunov chart is presented in the parameter plane. Its arrangement is discussed. We discuss the bifurcations of tori in the system at large frequency detuning of the oscillators. Here are quasi-periodic saddle-node, Hopf and Neimark-Sacker bifurcations. The effect of increase of the threshold for the "amplitude death" regime and the possibilities of complete and partial broadband synchronization are revealed. KW - Chain of van der Pol oscillators KW - Bifurcations of tori KW - Amplitude death KW - Broadband synchronization Y1 - 2014 U6 - https://doi.org/10.1016/j.physleta.2013.10.049 SN - 0375-9601 SN - 1873-2429 VL - 378 IS - 3 SP - 153 EP - 157 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Stephan, Christoph A. T1 - A dark sector extension of the almost-commutative standard model JF - International journal of modern physics : A, Particles and fields, gravitation, cosmology, nuclear physics N2 - We consider an extension of the Standard Model within the framework of Noncommutative Geometry. The model is based on an older model [C. A. Stephan, Phys. Rev. D 79, 065013 (2009)] which extends the Standard Model by new fermions, a new U(1)-gauge group and, crucially, a new scalar field which couples to the Higgs field. This new scalar field allows to lower the mass of the Higgs mass from similar to 170 GeV, as predicted by the Spectral Action for the Standard Model, to a value of 120-130 GeV. The shortcoming of the previous model lay in its inability to meet all the constraints on the gauge couplings implied by the Spectral Action. These shortcomings are cured in the present model which also features a "dark sector" containing fermions and scalar particles. KW - Noncommutative geometry KW - spectral triple KW - beyond Standard Model KW - Higgs boson KW - scalar fields Y1 - 2014 U6 - https://doi.org/10.1142/S0217751X14500055 SN - 0217-751X SN - 1793-656X VL - 29 IS - 1 PB - World Scientific CY - Singapore ER - TY - JOUR A1 - Palyulin, Vladimir V. A1 - Ala-Nissila, Tapio A1 - Metzler, Ralf T1 - Polymer translocation: the first two decades and the recent diversification JF - Soft matter N2 - Probably no other field of statistical physics at the borderline of soft matter and biological physics has caused such a flurry of papers as polymer translocation since the 1994 landmark paper by Bezrukov, Vodyanoy, and Parsegian and the study of Kasianowicz in 1996. Experiments, simulations, and theoretical approaches are still contributing novel insights to date, while no universal consensus on the statistical understanding of polymer translocation has been reached. We here collect the published results, in particular, the famous-infamous debate on the scaling exponents governing the translocation process. We put these results into perspective and discuss where the field is going. In particular, we argue that the phenomenon of polymer translocation is non-universal and highly sensitive to the exact specifications of the models and experiments used towards its analysis. Y1 - 2014 U6 - https://doi.org/10.1039/c4sm01819b SN - 1744-683X SN - 1744-6848 VL - 10 IS - 45 SP - 9016 EP - 9037 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Palyulin, Vladimir V. A1 - Metzler, Ralf T1 - Speeding up the first-passage for subdiffusion by introducing a finite potential barrier JF - Journal of physics : A, Mathematical and theoretical N2 - We show that for a subdiffusive continuous time random walk with scale-free waiting time distribution the first-passage dynamics on a finite interval can be optimized by introduction of a piecewise linear potential barrier. Analytical results for the survival probability and first-passage density based on the fractional Fokker-Planck equation are shown to agree well with Monte Carlo simulations results. As an application we discuss an improved design for efficient translocation of gradient copolymers compared to homopolymer translocation in a quasi-equilibrium approximation. KW - first passage KW - anomalous diffusion KW - potential landscape KW - polymer translocation Y1 - 2014 U6 - https://doi.org/10.1088/1751-8113/47/3/032002 SN - 1751-8113 SN - 1751-8121 VL - 47 IS - 3 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Aliu, E. A1 - Archambault, S. A1 - Aune, T. A1 - Benbow, W. A1 - Berger, K. A1 - Bird, R. A1 - Bouvier, A. A1 - Buckley, J. H. A1 - Bugaev, V. A1 - Byrum, K. A1 - Cerruti, M. A1 - Chen, Xuhui A1 - Ciupik, L. A1 - Connolly, M. P. A1 - Cui, W. A1 - Dumm, J. A1 - Errando, M. A1 - Falcone, A. A1 - Federici, Simone A1 - Feng, Q. A1 - Finley, J. P. A1 - Fortin, P. A1 - Fortson, L. A1 - Furniss, A. A1 - Galante, N. A1 - Gillanders, G. H. A1 - Griffin, S. A1 - Griffiths, S. T. A1 - Grube, J. A1 - Gyuk, G. A1 - Hanna, D. A1 - Holder, J. A1 - Hughes, G. A1 - Humensky, T. B. A1 - Kaaret, P. A1 - Kertzman, M. A1 - Khassen, Y. A1 - Kieda, D. A1 - Krennrich, F. A1 - Kumar, S. A1 - Lang, M. J. A1 - Lyutikov, M. A1 - Maier, G. A1 - McArthur, S. A1 - McCann, A. A1 - Meagher, K. A1 - Millis, J. A1 - Moriarty, P. A1 - Mukherjee, R. A1 - Ong, R. A. A1 - Otte, A. N. A1 - Park, N. A1 - Perkins, J. S. A1 - Pohl, M. A1 - Popkow, A. A1 - Quinn, J. A1 - Ragan, K. A1 - Rajotte, J. A1 - Reyes, L. C. A1 - Reynolds, P. T. A1 - Richards, G. T. A1 - Roache, E. A1 - Sembroski, G. H. A1 - Sheidaei, F. A1 - Smith, A. W. A1 - Staszak, D. A1 - Telezhinsky, Igor O. A1 - Theiling, M. A1 - Tucci, J. V. A1 - Tyler, J. A1 - Varlotta, A. A1 - Wakely, S. P. A1 - Weekes, T. C. A1 - Weinstein, A. A1 - Welsing, R. A1 - Williams, D. A. A1 - Zajczyk, A. A1 - Zitzer, B. T1 - A search for enhanced very high energy GAMMA-RAY emission from the 2013 march crab nebula flare JF - The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters N2 - In 2013 March, a flaring episode from the Crab Nebula lasting similar to 2 weeks was detected by Fermi-LAT (Large Area Telescope on board the Fermi Gamma-ray Space Telescope). The Very Energetic Radiation Imaging Telescope Array System (VERITAS) provides simultaneous observations throughout this period. During the flare, Fermi-LAT detected a 20 fold increase in flux above the average synchrotron flux >100 MeV seen from the Crab Nebula. Simultaneous measurements with VERITAS are consistent with the non-variable long-term average Crab Nebula flux at TeV energies. Assuming a linear correlation between the very high energy flux change >1 TeV and the flux change seen in the Fermi-LAT band >100 MeV during the period of simultaneous observations, the linear correlation factor can be constrained to be at most 8.6 x 10(-3) with 95% confidence. KW - gamma rays: general KW - ISM: individual objects (Crab Nebula) Y1 - 2014 U6 - https://doi.org/10.1088/2041-8205/781/1/L11 SN - 2041-8205 SN - 2041-8213 VL - 781 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Spahn, Frank A1 - Vieira Neto, E. A1 - Guimaraes, A. H. F. A1 - Gorban, A. N. A1 - Brilliantov, Nikolai V. T1 - A statistical model of aggregate fragmentation JF - New journal of physics : the open-access journal for physics N2 - A statistical model of fragmentation of aggregates is proposed, based on the stochastic propagation of cracks through the body. The propagation rules are formulated on a lattice and mimic two important features of the process-a crack moves against the stress gradient while dissipating energy during its growth. We perform numerical simulations of the model for two-dimensional lattice and reveal that the mass distribution for small-and intermediate-size fragments obeys a power law, F(m) proportional to m(-3/2), in agreement with experimental observations. We develop an analytical theory which explains the detected power law and demonstrate that the overall fragment mass distribution in our model agrees qualitatively with that one observed in experiments. Y1 - 2014 U6 - https://doi.org/10.1088/1367-2630/16/1/013031 SN - 1367-2630 VL - 16 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Gerhardt, Matthias A1 - Walz, Michael A1 - Beta, Carsten T1 - Signaling in chemotactic amoebae remains spatially confined to stimulated membrane regions JF - Journal of cell science N2 - Recent work has demonstrated that the receptor-mediated signaling system in chemotactic amoeboid cells shows typical properties of an excitable system. Here, we delivered spatially confined stimuli of the chemoattractant cAMP to the membrane of differentiated Dictyostelium discoideum cells to investigate whether localized receptor stimuli can induce the spreading of excitable waves in the G-protein-dependent signal transduction system. By imaging the spatiotemporal dynamics of fluorescent markers for phosphatidylinositol (3,4,5)-trisphosphate (PIP3), PTEN and filamentous actin, we observed that the activity of the signaling pathway remained spatially confined to the stimulated membrane region. Neighboring parts of the membrane were not excited and no receptor-initiated spatial spreading of excitation waves was observed. To generate localized cAMP stimuli, either particles that carried covalently bound cAMP molecules on their surface were brought into contact with the cell or a patch of the cell membrane was aspirated into a glass micropipette to shield this patch against freely diffusing cAMP molecules in the surrounding medium. Additionally, the binding site of the cAMP receptor was probed with different surface-immobilized cAMP molecules, confirming results from earlier ligand-binding studies. KW - Signal transduction KW - Excitable dynamics KW - Dictyostelium KW - cAMP KW - PIP3 KW - PIP2 KW - PI3K KW - PTEN KW - Micropipette aspiration KW - cAMP receptor KW - Patch clamp Y1 - 2014 U6 - https://doi.org/10.1242/jcs.161133 SN - 0021-9533 SN - 1477-9137 VL - 127 IS - 23 SP - 5115 EP - 5125 PB - Company of Biologists Limited CY - Cambridge ER - TY - JOUR A1 - Sanders, Lloyd P. A1 - Lomholt, Michael A. A1 - Lizana, Ludvig A1 - Fogelmark, Karl A1 - Metzler, Ralf A1 - Ambjoernsson, Tobias T1 - Severe slowing-down and universality of the dynamics in disordered interacting many-body systems: ageing and ultraslow diffusion JF - New journal of physics : the open-access journal for physics N2 - Low-dimensional, many-body systems are often characterized by ultraslow dynamics. We study a labelled particle in a generic system of identical particles with hard-core interactions in a strongly disordered environment. The disorder is manifested through intermittent motion with scale-free sticking times at the single particle level. While for a non-interacting particle we find anomalous diffusion of the power-law form < x(2)(t)> similar or equal to t(alpha) of the mean squared displacement with 0 < alpha < 1, we demonstrate here that the combination of the disordered environment with the many-body interactions leads to an ultraslow, logarithmic dynamics < x(2)(t)> similar or equal to log(1/2)t with a universal 1/2 exponent. Even when a characteristic sticking time exists but the fluctuations of sticking times diverge we observe the mean squared displacement < x(2)(t)> similar or equal to t(gamma) with 0 < gamma < 1/2, that is slower than the famed Harris law < x(2)(t)> similar or equal to t(1/2) without disorder. We rationalize the results in terms of a subordination to a counting process, in which each transition is dominated by the forward waiting time of an ageing continuous time process. KW - single-file diffusion KW - continuous time random walks KW - ageing Y1 - 2014 U6 - https://doi.org/10.1088/1367-2630/16/11/113050 SN - 1367-2630 VL - 16 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Evans, T. M. A1 - Murphy, M. T. A1 - Whitmore, J. B. A1 - Misawa, T. A1 - Centurion, Martin A1 - Lopez, S. A1 - Martins, C. J. A. P. A1 - Molaro, P. A1 - Petitjean, P. A1 - Rahmani, H. A1 - Srianand, R. A1 - Wendt, Martin T1 - The UVES Large Program for testing fundamental physics - III. Constraints on the fine-structure constant from three telescopes JF - Monthly notices of the Royal Astronomical Society KW - intergalactic medium KW - quasars: absorption lines KW - quasars: individual: HS 1549+1919 KW - cosmology: miscellaneous KW - cosmology: observations Y1 - 2014 U6 - https://doi.org/10.1093/mnras/stu1754 SN - 0035-8711 SN - 1365-2966 VL - 445 IS - 1 SP - 128 EP - 150 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Zamponi, Flavio A1 - Penfold, Thomas J. A1 - Nachtegaal, Maarten A1 - Luebcke, Andrea A1 - Rittmann, Jochen A1 - Milne, Chris J. A1 - Chergui, Majed A1 - van Bokhoven, Jeroen A. T1 - Probing the dynamics of plasmon-excited hexanethiol-capped gold nanoparticles by picosecond X-ray absorption spectroscopy JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - Picosecond X-ray absorption spectroscopy (XAS) is used to investigate the electronic and structural dynamics initiated by plasmon excitation of 1.8 nm diameter Au nanoparticles (NPs) functionalised with 1-hexanethiol. We show that 100 ps after photoexcitation the transient XAS spectrum is consistent with an 8% expansion of the Au-Au bond length and a large increase in disorder associated with melting of the NPs. Recovery of the ground state occurs with a time constant of similar to 1.8 ns, arising from thermalisation with the environment. Simulations reveal that the transient spectrum exhibits no signature of charge separation at 100 ps and allows us to estimate an upper limit for the quantum yield (QY) of this process to be <0.1. Y1 - 2014 U6 - https://doi.org/10.1039/c4cp03301a SN - 1463-9076 SN - 1463-9084 VL - 16 IS - 42 SP - 23157 EP - 23163 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Metzler, Ralf A1 - Sanders, L. A1 - Lomholt, M. A. A1 - Lizana, L. A1 - Fogelmark, K. A1 - Ambjoernsson, Tobias T1 - Ageing single file motion JF - The European physical journal Y1 - 2014 U6 - https://doi.org/10.1140/epjst/e2014-02333-5 SN - 1951-6355 SN - 1951-6401 VL - 223 IS - 14 SP - 3287 EP - 3293 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Louis, Rohan E. A1 - Puschmann, Klaus G. A1 - Kliem, Bernhard A1 - Balthasar, Horst A1 - Denker, Carsten T1 - Sunspot splitting triggering an eruptive flare JF - Astronomy and astrophysics : an international weekly journal N2 - Aims. We investigate how the splitting of the leading sunspot and associated flux emergence and cancellation in active region NOAA 11515 caused an eruptive M5.6 flare on 2012 July 2. Methods. Continuum intensity, line-of-sight magnetogram, and dopplergram data of the Helioseismic and Magnetic Imager were employed to analyse the photospheric evolution. Filtergrams in H alpha and He I 10830 angstrom of the Chromospheric Telescope at the Observatorio del Teide, Tenerife, track the evolution of the flare. The corresponding coronal conditions were derived from 171 angstrom and 304 angstrom images of the Atmospheric Imaging Assembly. Local correlation tracking was utilized to determine shear flows. Results. Emerging flux formed a neutral line ahead of the leading sunspot and new satellite spots. The sunspot splitting caused a long-lasting flow towards this neutral line, where a filament formed. Further flux emergence, partly of mixed polarity, as well as episodes of flux cancellation occurred repeatedly at the neutral line. Following a nearby C-class precursor flare with signs of interaction with the filament, the filament erupted nearly simultaneously with the onset of the M5.6 flare and evolved into a coronal mass ejection. The sunspot stretched without forming a light bridge, splitting unusually fast (within about a day, complete approximate to 6 h after the eruption) in two nearly equal parts. The front part separated strongly from the active region to approach the neighbouring active region where all its coronal magnetic connections were rooted. It also rotated rapidly (by 4.9 degrees h(-1)) and caused significant shear flows at its edge. Conclusions. The eruption resulted from a complex sequence of processes in the (sub-)photosphere and corona. The persistent flows towards the neutral line likely caused the formation of a flux rope that held the filament. These flows, their associated flux cancellation, the emerging flux, and the precursor flare all contributed to the destabilization of the flux rope. We interpret the sunspot splitting as the separation of two flux bundles differently rooted in the convection zone and only temporarily joined in the spot. This explains the rotation as the continued rise of the separating flux, and it implies that at least this part of the sunspot was still connected to its roots deep in the convection zone. KW - Sun: flares KW - sunspots KW - Sun: photosphere KW - Sun: chromosphere KW - techniques: photometric Y1 - 2014 U6 - https://doi.org/10.1051/0004-6361/201321106 SN - 0004-6361 SN - 1432-0746 VL - 562 PB - EDP Sciences CY - Les Ulis ER - TY - JOUR A1 - Aliu, E. A1 - Archambault, S. A1 - Arlen, T. A1 - Aune, T. A1 - Behera, B. A1 - Beilicke, M. A1 - Benbow, W. A1 - Berger, K. A1 - Bird, R. A1 - Bouvier, A. A1 - Buckley, J. H. A1 - Bugaev, V. A1 - Byrum, K. A1 - Cerruti, M. A1 - Chen, Xuhui A1 - Ciupik, L. A1 - Connolly, M. P. A1 - Cui, W. A1 - Duke, C. A1 - Dumm, J. A1 - Errando, M. A1 - Falcone, A. A1 - Federici, S. A1 - Feng, Q. A1 - Finley, J. P. A1 - Fleischhack, H. A1 - Fortin, P. A1 - Fortson, L. A1 - Furniss, A. A1 - Galante, N. A1 - Gillanders, G. H. A1 - Griffin, S. A1 - Griffiths, S. T. A1 - Grube, J. A1 - Gyuk, G. A1 - Hanna, D. A1 - Holder, J. A1 - Hughes, G. A1 - Humensky, T. B. A1 - Johnson, C. A. A1 - Kaaret, P. A1 - Kertzman, M. A1 - Khassen, Y. A1 - Kieda, D. A1 - Krawczynski, H. A1 - Krennrich, F. A1 - Lang, M. J. A1 - Madhavan, A. S. A1 - Maier, G. A1 - Majumdar, P. A1 - McArthur, S. A1 - McCann, A. A1 - Meagher, K. A1 - Millis, J. A1 - Moriarty, P. A1 - Mukherjee, R. A1 - Nieto, D. A1 - Ong, R. A. A1 - Otte, A. N. A1 - Park, N. A1 - Perkins, J. S. A1 - Pohl, M. A1 - Popkow, A. A1 - Prokoph, H. A1 - Quinn, J. A1 - Ragan, K. A1 - Reyes, L. C. A1 - Reynolds, P. T. A1 - Richards, G. T. A1 - Roache, E. A1 - Sembroski, G. H. A1 - Smith, A. W. A1 - Staszak, D. A1 - Telezhinsky, Igor O. A1 - Theiling, M. A1 - Varlotta, A. A1 - Vassiliev, V. V. A1 - Vincent, S. A1 - Wakely, S. P. A1 - Weekes, T. C. A1 - Weinstein, A. A1 - Welsing, R. A1 - Williams, D. A. A1 - Zajczyk, A. A1 - Zitzer, B. T1 - A three-year multi-wavelenght study of the very-high-energy gamma-ray Blazar 1ES 0229+200 JF - The astrophysical journal : an international review of spectroscopy and astronomical physics KW - BL Lacertae objects: general KW - BL Lacertae objects: individual (1ES 0229+200, VER J0232+202) KW - diffuse radiation KW - galaxies: active KW - gamma rays: general KW - magnetic fields Y1 - 2014 U6 - https://doi.org/10.1088/0004-637X/782/1/13 SN - 0004-637X SN - 1538-4357 VL - 782 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Toeroek, T. A1 - Leake, J. E. A1 - Titov, Viacheslav S. A1 - Archontis, V. A1 - Mikic, Z. A1 - Linton, M. G. A1 - Dalmasse, K. A1 - Aulanier, Guillaume A1 - Kliem, Bernhard T1 - Distribution of electric currents in solar active regions JF - The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters KW - magnetohydrodynamics (MHD) KW - Sun: corona KW - Sun: coronal mass ejections (CMEs) Y1 - 2014 U6 - https://doi.org/10.1088/2041-8205/782/1/L10 SN - 2041-8205 SN - 2041-8213 VL - 782 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Acciari, V. A. A1 - Arlen, T. A1 - Aune, T. A1 - Benbow, W. A1 - Bird, R. A1 - Bouvier, A. A1 - Bradbury, S. M. A1 - Buckley, J. H. A1 - Bugaev, V. A1 - de la Calle Perez, I. A1 - Carter-Lewis, D. A. A1 - Cesarini, A. A1 - Ciupik, L. A1 - Collins-Hughes, E. A1 - Connolly, M. P. A1 - Cui, W. A1 - Duke, C. A1 - Dumm, J. A1 - Falcone, A. A1 - Federici, Simone A1 - Fegan, D. J. A1 - Fegan, S. J. A1 - Finley, J. P. A1 - Finnegan, G. A1 - Fortson, L. A1 - Gaidos, J. A1 - Galante, N. A1 - Gall, D. A1 - Gibbs, K. A1 - Gillanders, G. H. A1 - Griffin, S. A1 - Grube, J. A1 - Gyuk, G. A1 - Hanna, D. A1 - Horan, D. A1 - Humensky, T. B. A1 - Kaaret, P. A1 - Kertzman, M. A1 - Khassen, Y. A1 - Kieda, D. A1 - Krawczynski, H. A1 - Krennrich, F. A1 - Lang, M. J. A1 - McEnery, J. E. A1 - Madhavan, A. S. A1 - Moriarty, P. A1 - Nelson, T. A1 - Ong, R. A. A1 - Orr, M. A1 - Otte, A. N. A1 - Perkins, J. S. A1 - Petry, D. A1 - Pichel, A. A1 - Pohl, M. A1 - Quinn, J. A1 - Ragan, K. A1 - Reynolds, T. A1 - Roache, E. A1 - Rovero, A. A1 - Schroedter, M. A1 - Sembroski, G. H. A1 - Smith, A. A1 - Telezhinsky, Igor O. A1 - Theiling, M. A1 - Toner, J. A1 - Tyler, J. A1 - Varlotta, A. A1 - Vivier, M. A1 - Wakely, S. P. A1 - Ward, J. E. A1 - Weekes, T. C. A1 - Weinstein, A. A1 - Welsing, R. A1 - Williams, D. A. A1 - Wissel, S. T1 - Observation of Markarian 421 in TeV gamma rays over a 14-year time span JF - Astroparticle physics N2 - The variability of the blazar Markarian 421 in TeV gamma rays over a 14-year time period has been explored with the Whipple 10 m telescope. It is shown that the dynamic range of its flux variations is large and similar to that in X-rays. A correlation between the X-ray and TeV energy bands is observed during some bright flares and when the complete data sets are binned on long timescales. The main database consists of 878.4 h of observation with the Whipple telescope, spread over 783 nights. The peak energy response of the telescope was 400 GeV with 20% uncertainty. This is the largest database of any TeV-emitting active galactic nucleus (AGN) and hence was used to explore the variability profile of Markarian 421. The tithe-averaged flux from Markarian 421 over this period was 0.446 +/- 0.008 Crab flux units. The flux exceeded 10 Crab flux units on three separate occasions. For the 2000-2001 season the average flux reached 1.86 Crab units, while in the 1996-1997 season the average flux was only 0.23 Crab units. KW - AGN KW - TeV gamma rays KW - Markarian 421 Y1 - 2014 U6 - https://doi.org/10.1016/j.astropartphys.2013.10.004 SN - 0927-6505 SN - 1873-2852 VL - 54 SP - 1 EP - 10 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Balzer, Arnim A1 - Fuessling, M. A1 - Gajdus, M. A1 - Goering, D. A1 - Lopatin, A. A1 - de Naurois, M. A1 - Schlenker, S. A1 - Schwanke, U. A1 - Stegmann, Christian T1 - The HESS central data acquisition system JF - Astroparticle physics KW - DAQ KW - Data acquisition KW - VHE KW - Gamma ray astronomy KW - HESS Y1 - 2014 U6 - https://doi.org/10.1016/j.astropartphys.2013.11.007 SN - 0927-6505 SN - 1873-2852 VL - 54 SP - 67 EP - 80 PB - Elsevier CY - Amsterdam ER - TY - INPR A1 - Bürger, Gerd T1 - Comment on "Bias correction, quantile mapping, and downscaling: revisiting the inflation issue" T2 - Journal of climate N2 - In a recent paper, Maraun describes the adverse effects of quantile mapping on downscaling. He argues that when large-scale GCM variables are rescaled directly to small-scale fields or even station data, genuine small-scale covariability is lost and replaced by uniform variability inherited from the larger scales. This leads to a misrepresentation mainly of areal means and long-term trends. This comment acknowledges the former point, although the argument is relatively old, but disagrees with the latter, showing that grid-size long-term trends can be different from local trends. Finally, because it is partly incorrectly addressed, some clarification is added regarding the inflation issue, stressing that neither randomization nor inflation is free of unverified assumptions. KW - Climate change KW - Statistics KW - Climate variability Y1 - 2014 U6 - https://doi.org/10.1175/JCLI-D-13-00184.1 SN - 0894-8755 SN - 1520-0442 VL - 27 IS - 4 SP - 1819 EP - 1820 PB - American Meteorological Soc. CY - Boston ER - TY - JOUR A1 - Zink, Christof A1 - Werner, Nils A1 - Jechow, Andreas A1 - Heuer, Axel A1 - Menzel, Ralf T1 - Multi-wavelength operation of a single broad area diode laser by spectral beam combining JF - IEEE photonics technology letters N2 - Stabilized multi-wavelength emission from a single emitter broad area diode laser (BAL) is realized by utilizing an external cavity with a spectral beam combining architecture. Self-organized emitters that are equidistantly spaced across the slow axis are enforced by the spatially distributed wavelength selectivity of the external cavity. This resulted in an array like near-field emission although the BAL is physically a single emitter without any epitaxial sub-structuring and only one electrical contact. Each of the self-organized emitters is operated at a different wavelength and the emission is multiplexed into one spatial mode with near-diffraction limited beam quality. With this setup, multi-line emission of 31 individual spectral lines centered around and a total spectral width of 3.6 nm is realized with a 1000 mu m wide BAL just above threshold. To the best of our knowledge, this is the first demonstration of such a self-organization of emitters by optical feedback utilizing a spectral beam combining architecture. KW - Laser resonators KW - semiconductor lasers KW - optical feedback Y1 - 2014 U6 - https://doi.org/10.1109/LPT.2013.2291963 SN - 1041-1135 SN - 1941-0174 VL - 26 IS - 3 SP - 253 EP - 256 PB - Inst. of Electr. and Electronics Engineers CY - Piscataway ER - TY - JOUR A1 - Archer, A. A1 - Barnacka, Anna A1 - Beilicke, M. A1 - Benbow, W. A1 - Berger, K. A1 - Bird, R. A1 - Biteau, Jonathan A1 - Buckley, J. H. A1 - Bugaev, V. A1 - Byrum, K. A1 - Cardenzana, J. V. A1 - Cerruti, M. A1 - Chen, W. A1 - Chen, Xiaoming A1 - Ciupik, L. A1 - Connolly, M. P. A1 - Cui, W. A1 - Dickinson, H. J. A1 - Dumm, J. A1 - Eisch, J. D. A1 - Falcone, A. A1 - Federici, Simone A1 - Feng, Q. A1 - Finley, J. P. A1 - Fleischhack, H. A1 - Fortson, L. A1 - Furniss, A. A1 - Galante, N. A1 - Griffin, S. A1 - Griffiths, S. T. A1 - Grube, J. A1 - Gyuk, G. A1 - Hakansson, Nils A1 - Hanna, D. A1 - Holder, J. A1 - Hughes, G. A1 - Johnson, C. A. A1 - Kaaret, P. A1 - Kar, P. A1 - Kertzman, M. A1 - Khassen, Y. A1 - Kieda, D. A1 - Krawczynski, H. A1 - Kumar, S. A1 - Lang, M. J. A1 - Maier, G. A1 - McArthur, S. A1 - McCann, A. A1 - Meagher, K. A1 - Moriarty, P. A1 - Mukherjee, R. A1 - Nieto, D. A1 - Ong, R. A. A1 - Otte, A. N. A1 - Park, N. A1 - Perkins, J. S. A1 - Pohl, Manuela A1 - Popkow, A. A1 - Prokoph, H. A1 - Pueschel, Elisa A1 - Quinn, J. A1 - Ragan, K. A1 - Rajotte, J. A1 - Reyes, L. C. A1 - Reynolds, P. T. A1 - Richards, G. T. A1 - Roache, E. A1 - Sembroski, G. H. A1 - Shahinyan, K. A1 - Smith, A. W. A1 - Staszak, D. A1 - Telezhinsky, Igor O. A1 - Tucci, J. V. A1 - Tyler, J. A1 - Varlotta, A. A1 - Vincent, S. A1 - Wakely, S. P. A1 - Weinstein, A. A1 - Welsing, R. A1 - Wilhelm, Alina A1 - Williams, D. A. A1 - Zajczyk, A. A1 - Zitzer, B. T1 - Very-high energy observations of the galactic center region by veritas IN 2010-2012 JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - The Galactic center is an interesting region for high-energy (0.1-100 GeV) and very-high-energy (E > 100 GeV) gamma-ray observations. Potential sources of GeV/TeV gamma-ray emission have been suggested, e.g., the accretion of matter onto the supermassive black hole, cosmic rays from a nearby supernova remnant (e.g., Sgr A East), particle acceleration in a plerion, or the annihilation of dark matter particles. The Galactic center has been detected by EGRET and by Fermi/LAT in the MeV/GeV energy band. At TeV energies, the Galactic center was detected with moderate significance by the CANGAROO and Whipple 10 m telescopes and with high significance by H.E.S.S., MAGIC, and VERITAS. We present the results from three years of VERITAS observations conducted at large zenith angles resulting in a detection of the Galactic center on the level of 18 standard deviations at energies above similar to 2.5 TeV. The energy spectrum is derived and is found to be compatible with hadronic, leptonic, and hybrid emission models discussed in the literature. Future, more detailed measurements of the high-energy cutoff and better constraints on the high-energy flux variability will help to refine and/or disentangle the individual models. KW - astroparticle physics KW - black hole physics KW - Galaxy: center KW - gamma rays: galaxies KW - methods: data analysis KW - radiation mechanisms: non-thermal Y1 - 2014 U6 - https://doi.org/10.1088/0004-637X/790/2/149 SN - 0004-637X SN - 1538-4357 VL - 790 IS - 2 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Zink, Christof A1 - Niebuhr, Mario A1 - Jechow, Andreas A1 - Heuer, Axel A1 - Menzel, Ralf T1 - Broad area diode laser with on-chip transverse Bragg grating stabilized in an off-axis external cavity JF - Optics express : the international electronic journal of optics N2 - The emission characteristics of a novel, specially designed broad area diode laser (BAL) with on-chip transversal Bragg resonance (TBR) grating in lateral direction were investigated in an off-axis external cavity setup. The internal TBR grating defines a low loss transversal mode at a specific angle of incidence and a certain wavelength. By providing feedback at this specific angle with an external mirror, it is possible to select this low loss transverse mode and stabilize the BAL. Near diffraction limited emission with an almost single lobed far field pattern could be realized, in contrast to the double lobed far field pattern of similar setups using standard BALs or phase-locked diode laser arrays. Furthermore, we could achieve a narrow bandwidth emission with a simplified setup without external frequency selective elements. (C) 2014 Optical Society of America Y1 - 2014 U6 - https://doi.org/10.1364/OE.22.014108 SN - 1094-4087 VL - 22 IS - 12 SP - 14108 EP - 14113 PB - Optical Society of America CY - Washington ER - TY - JOUR A1 - Cardinaletti, Ilaria A1 - Kesters, Jurgen A1 - Bertho, Sabine A1 - Conings, Bert A1 - Piersimoni, Fortunato A1 - Lutsen, Laurence A1 - Nesladek, Milos A1 - Van Mele, Bruno A1 - Van Assche, Guy A1 - Vandewal, Koen A1 - Salleo, Alberto A1 - Vanderzande, Dirk A1 - Maes, Wouter A1 - Manca, Jean V. T1 - Toward bulk heterojunction polymer solar cells with thermally stable active layer morphology JF - Journal of photonics for energy N2 - When state-of-the-art bulk heterojunction organic solar cells with ideal morphology are exposed to prolonged storage or operation at elevated temperatures, a thermally induced disruption of the active layer blend can occur, in the form of a separation of donor and acceptor domains, leading to diminished photovoltaic performance. Toward the long-term use of organic solar cells in real-life conditions, an important challenge is, therefore, the development of devices with a thermally stable active layer morphology. Several routes are being explored, ranging from the use of high glass transition temperature, cross-linkable and/or side-chain functionalized donor and acceptor materials, to light-induced dimerization of the fullerene acceptor. A better fundamental understanding of the nature and underlying mechanisms of the phase separation and stabilization effects has been obtained through a variety of analytical, thermal analysis, and electro-optical techniques. Accelerated aging systems have been used to study the degradation kinetics of bulk heterojunction solar cells in situ at various temperatures to obtain aging models predicting solar cell lifetime. The following contribution gives an overview of the current insights regarding the intrinsic thermally induced aging effects and the proposed solutions, illustrated by examples of our own research groups. (C) The Authors. Published by SPIE under a Creative Commons Attribution 3.0 Unported License. KW - organic photovoltaics KW - bulk heterojunction KW - thermal stability KW - phase separation KW - lifetime Y1 - 2014 U6 - https://doi.org/10.1117/1.JPE.4.040997 SN - 1947-7988 VL - 4 PB - SPIE CY - Bellingham ER - TY - JOUR A1 - Cheng, X. A1 - Ding, M. D. A1 - Zhang, J. A1 - Sun, X. D. A1 - Guo, Y. A1 - Wang, Yi-Ming A1 - Kliem, Bernhard A1 - Deng, Y. Y. T1 - Formation of a double-decker magnetic flux rope in the sigmoidal solar active region 11520 JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - In this paper, we address the formation of a magnetic flux rope (MFR) that erupted on 2012 July 12 and caused a strong geomagnetic storm event on July 15. Through analyzing the long-term evolution of the associated active region observed by the Atmospheric Imaging Assembly and the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory, it is found that the twisted field of an MFR, indicated by a continuous S-shaped sigmoid, is built up from two groups of sheared arcades near the main polarity inversion line a half day before the eruption. The temperature within the twisted field and sheared arcades is higher than that of the ambient volume, suggesting that magnetic reconnection most likely works there. The driver behind the reconnection is attributed to shearing and converging motions at magnetic footpoints with velocities in the range of 0.1-0.6 km s(-1). The rotation of the preceding sunspot also contributes to the MFR buildup. Extrapolated three-dimensional non-linear force-free field structures further reveal the locations of the reconnection to be in a bald-patch region and in a hyperbolic flux tube. About 2 hr before the eruption, indications of a second MFR in the form of an S-shaped hot channel are seen. It lies above the original MFR that continuously exists and includes a filament. The whole structure thus makes up a stable double-decker MFR system for hours prior to the eruption. Eventually, after entering the domain of instability, the high-lying MFR impulsively erupts to generate a fast coronal mass ejection and X-class flare; while the low-lying MFR remains behind and continuously maintains the sigmoidicity of the active region. KW - Sun: corona KW - Sun: coronal mass ejections (CMEs) KW - Sun: filaments, prominences KW - Sun: magnetic fields Y1 - 2014 U6 - https://doi.org/10.1088/0004-637X/789/2/93 SN - 0004-637X SN - 1538-4357 VL - 789 IS - 2 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Beshnova, Daria A. A1 - Cherstvy, Andrey G. A1 - Vainshtein, Yevhen A1 - Teif, Vladimir B. T1 - Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions JF - PLoS Computational Biology : a new community journal N2 - The nucleosome repeat length (NRL) is an integral chromatin property important for its biological functions. Recent experiments revealed several conflicting trends of the NRL dependence on the concentrations of histones and other architectural chromatin proteins, both in vitro and in vivo, but a systematic theoretical description of NRL as a function of DNA sequence and epigenetic determinants is currently lacking. To address this problem, we have performed an integrative biophysical and bioinformatics analysis in species ranging from yeast to frog to mouse where NRL was studied as a function of various parameters. We show that in simple eukaryotes such as yeast, a lower limit for the NRL value exists, determined by internucleosome interactions and remodeler action. For higher eukaryotes, also the upper limit exists since NRL is an increasing but saturating function of the linker histone concentration. Counterintuitively, smaller H1 variants or non-histone architectural proteins can initiate larger effects on the NRL due to entropic reasons. Furthermore, we demonstrate that different regimes of the NRL dependence on histone concentrations exist depending on whether DNA sequence-specific effects dominate over boundary effects or vice versa. We consider several classes of genomic regions with apparently different regimes of the NRL variation. As one extreme, our analysis reveals that the period of oscillations of the nucleosome density around bound RNA polymerase coincides with the period of oscillations of positioning sites of the corresponding DNA sequence. At another extreme, we show that although mouse major satellite repeats intrinsically encode well-defined nucleosome preferences, they have no unique nucleosome arrangement and can undergo a switch between two distinct types of nucleosome positioning. Y1 - 2014 U6 - https://doi.org/10.1371/journal.pcbi.1003698 SN - 1553-734X SN - 1553-7358 VL - 10 IS - 7 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Gao, Guan-Nan A1 - Wang, Min A1 - Lin, Jun A1 - Wu, Ning A1 - Tan, Cheng-Ming A1 - Kliem, Bernhard A1 - Su, Yang T1 - Radio observations of the fine structure inside a post-CME current sheet JF - Research in astronomy and astrophysics : a publication of the Chinese Astronomical Society and National Astronomical Observatories, Chinese Academy of Sciences N2 - A solar radio burst was observed in a coronal mass ejection/flare event by the Solar Broadband Radio Spectrometer at the Huairou Solar Observing Station on 2004 December 1. The data exhibited various patterns of plasma motions, suggestive of the interaction between sunward moving plasmoids and the flare loop system during the impulsive phase of the event. In addition to the radio data, the associated white-light, H alpha, extreme ultraviolet light, and soft and hard X-rays were also studied. KW - Sun: coronal mass ejections (CMEs) KW - Sun: flares KW - Sun: solar radio bursts KW - Sun: magnetic reconnection Y1 - 2014 U6 - https://doi.org/10.1088/1674-4527/14/7/006 SN - 1674-4527 VL - 14 IS - 7 SP - 843 EP - 854 PB - Chinese Astronomical Society and National Astronomical Observatories, Chinese Academy of Sciences CY - Beijing ER - TY - JOUR A1 - Kliem, Bernhard A1 - Lin, J. A1 - Forbes, T. G. A1 - Priest, E. R. A1 - Toeroek, T. T1 - Catastrophe versus instability for the eruption of a toroadal solar magnetic flux JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - The onset of a solar eruption is formulated here as either a magnetic catastrophe or as an instability. Both start with the same equation of force balance governing the underlying equilibria. Using a toroidal flux rope in an external bipolar or quadrupolar field as a model for the current-carrying flux, we demonstrate the occurrence of a fold catastrophe by loss of equilibrium for several representative evolutionary sequences in the stable domain of parameter space. We verify that this catastrophe and the torus instability occur at the same point; they are thus equivalent descriptions for the onset condition of solar eruptions. KW - magnetohydrodynamics (MHD) KW - Sun: corona KW - Sun: coronal mass ejections (CMEs) KW - Sun: filaments, prominences KW - Sun: flares KW - Sun: magnetic fields Y1 - 2014 U6 - https://doi.org/10.1088/0004-637X/789/1/46 SN - 0004-637X SN - 1538-4357 VL - 789 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Zhang, Haocheng A1 - Chen, Xuhui A1 - Boettcher, Markus T1 - Synchrotron polarization in blazars JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - We present a detailed analysis of time-and energy-dependent synchrotron polarization signatures in a shock-in-jet model for gamma-ray blazars. Our calculations employ a full three-dimensional radiation transfer code, assuming a helical magnetic field throughout the jet. The code considers synchrotron emission from an ordered magnetic field, and takes into account all light-travel-time and other relevant geometric effects, while the relevant synchrotron self-Compton and external Compton effects are handled with the two-dimensional Monte-Carlo/Fokker-Planck (MCFP) code. We consider several possible mechanisms through which a relativistic shock propagating through the jet may affect the jet plasma to produce a synchrotron and high-energy flare. Most plausibly, the shock is expected to lead to a compression of the magnetic field, increasing the toroidal field component and thereby changing the direction of the magnetic field in the region affected by the shock. We find that such a scenario leads to correlated synchrotron + synchrotron-self-Compton flaring, associated with substantial variability in the synchrotron polarization percentage and position angle. Most importantly, this scenario naturally explains large polarization angle rotations by greater than or similar to 180 degrees, as observed in connection with gamma-ray flares in several blazars, without the need for bent or helical jet trajectories or other nonaxisymmetric jet features. KW - galaxies: active KW - galaxies: jets KW - gamma rays: galaxies KW - radiation mechanisms: non-thermal KW - relativistic processes Y1 - 2014 U6 - https://doi.org/10.1088/0004-637X/789/1/66 SN - 0004-637X SN - 1538-4357 VL - 789 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Cherstvy, Andrey G. A1 - Metzler, Ralf T1 - Nonergodicity, fluctuations, and criticality in heterogeneous diffusion processes JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We study the stochastic behavior of heterogeneous diffusion processes with the power-law dependence D(x) similar to vertical bar x vertical bar(alpha) of the generalized diffusion coefficient encompassing sub- and superdiffusive anomalous diffusion. Based on statistical measures such as the amplitude scatter of the time-averaged mean-squared displacement of individual realizations, the ergodicity breaking and non-Gaussianity parameters, as well as the probability density function P(x, t), we analyze the weakly nonergodic character of the heterogeneous diffusion process and, particularly, the degree of irreproducibility of individual realizations. As we show, the fluctuations between individual realizations increase with growing modulus vertical bar alpha vertical bar of the scaling exponent. The fluctuations appear to diverge when the critical value alpha = 2 is approached, while for even larger alpha the fluctuations decrease, again. At criticality, the power-law behavior of the mean-squared displacement changes to an exponentially fast growth, and the fluctuations of the time-averaged mean-squared displacement do not converge for increasing number of realizations. From a systematic comparison we observe some striking similarities of the heterogeneous diffusion process with the familiar subdiffusive continuous time random walk process with power-law waiting time distribution and diverging characteristic waiting time. Y1 - 2014 U6 - https://doi.org/10.1103/PhysRevE.90.012134 SN - 1539-3755 SN - 1550-2376 VL - 90 IS - 1 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Reibis, Rona Katharina A1 - Völler, Heinz A1 - Gitt, Anselm A1 - Jannowitz, Christina A1 - Halle, Martin A1 - Pittrow, David A1 - Hildemann, Steven T1 - Management of patients with ST- segment elevation or non- ST- segment elevation acute coronary syndromes in cardiac rehabilitation centers JF - Clinical cardiology : international journal for cardiovascular diseases N2 - BackgroundCurrent data on the management of patients in cardiac rehabilitation (CR) after an acute hospital stay due to ST-segment elevation or non-ST segment elevation acute coronary syndromes (STE-ACS or NSTE-ACS) are limited. We aimed to describe patient characteristics, risk factor management, and lipid target achievement of patients in CR in Germany and compare the 2 groups. HypothesisWith respect to the risk factor pattern and treatment effects during a CR stay, there are important differences between STE-ACS and NSTE-ACS patients. MethodsComparison of 7950 patients by STE-ACS or NSTE-ACS status in the Transparency Registry to Objectify Guideline-Oriented Risk Factor Management registry (2010) who underwent an inpatient CR period of about 3 weeks. ResultsSTE-ACS patients compared to NSTE-ACS patients were significantly younger (60.5 vs 64.4 years, P < 0.0001), and had diabetes mellitus, hypertension, or any risk factor (exception: smoking) less often. At discharge, in STE-ACS compared to NSTE-ACS patients, the low-density lipoprotein cholesterol (LDL-C) <100 mg/dL goal was achieved by 75.3% and 76.2%, respectively (LDL-C <70 mg/dL by 27.7% and 27.4%), the high-density lipoprotein cholesterol goal of >50 mg/dL in women and >40 mg/dL in men was achieved by 49.3% and 49.0%, respectively, and the triglycerides goal of <150 mg/dl was achievedby 72.3% and 74.3%, respectively (all comparisons not significant). Mean systolic and diastolic blood pressure were 121/74 and 123/74 mm Hg, respectively (P < 0.0001 systolic, diastolic not significant). The maximum exercise capacity was 110 and 102 W, respectively (P < 0.0001), and the maximum walking distance was 581 and 451 meters, respectively (P value not significant). ConclusionsPatients with STE-ACS and NSTE-ACS differed moderately in their baseline characteristics. Both groups benefited from the participation in CR, as their lipid profile, blood pressure, and physical fitness improved. Y1 - 2014 U6 - https://doi.org/10.1002/clc.22241 SN - 0160-9289 SN - 1932-8737 VL - 37 IS - 4 SP - 213 EP - 221 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Goychuk, Igor A1 - Kharchenko, Vasyl O. A1 - Metzler, Ralf T1 - How Molecular Motors Work in the Crowded Environment of Living Cells: Coexistence and Efficiency of Normal and Anomalous Transport JF - PLoS one N2 - Recent experiments reveal both passive subdiffusion of various nanoparticles and anomalous active transport of such particles by molecular motors in the molecularly crowded environment of living biological cells. Passive and active microrheology reveals that the origin of this anomalous dynamics is due to the viscoelasticity of the intracellular fluid. How do molecular motors perform in such a highly viscous, dissipative environment? Can we explain the observed co-existence of the anomalous transport of relatively large particles of 100 to 500 nm in size by kinesin motors with the normal transport of smaller particles by the same molecular motors? What is the efficiency of molecular motors in the anomalous transport regime? Here we answer these seemingly conflicting questions and consistently explain experimental findings in a generalization of the well-known continuous diffusion model for molecular motors with two conformational states in which viscoelastic effects are included. Y1 - 2014 U6 - https://doi.org/10.1371/journal.pone.0091700 SN - 1932-6203 VL - 9 IS - 3 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Schulz, Johannes H. P. A1 - Barkai, Eli A1 - Metzler, Ralf T1 - Aging renewal theory and application to random walks JF - Physical review : X, Expanding access N2 - We discuss a renewal process in which successive events are separated by scale-free waiting time periods. Among other ubiquitous long-time properties, this process exhibits aging: events counted initially in a time interval [0, t] statistically strongly differ from those observed at later times [t(a,) t(a) + t]. The versatility of renewal theory is owed to its abstract formulation. Renewals can be interpreted as steps of a random walk, switching events in two-state models, domain crossings of a random motion, etc. In complex, disordered media, processes with scale-free waiting times play a particularly prominent role. We set up a unified analytical foundation for such anomalous dynamics by discussing in detail the distribution of the aging renewal process. We analyze its half-discrete, half-continuous nature and study its aging time evolution. These results are readily used to discuss a scale-free anomalous diffusion process, the continuous-time random walk. By this, we not only shed light on the profound origins of its characteristic features, such as weak ergodicity breaking, along the way, we also add an extended discussion on aging effects. In particular, we find that the aging behavior of time and ensemble averages is conceptually very distinct, but their time scaling is identical at high ages. Finally, we show how more complex motion models are readily constructed on the basis of aging renewal dynamics. Y1 - 2014 U6 - https://doi.org/10.1103/PhysRevX.4.011028 SN - 2160-3308 VL - 4 IS - 1 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Palyulin, Vladimir V. A1 - Chechkin, Aleksei V. A1 - Metzler, Ralf T1 - Levy flights do not always optimize random blind search for sparse targets JF - Proceedings of the National Academy of Sciences of the United States of America N2 - It is generally believed that random search processes based on scale-free, Levy stable jump length distributions (Levy flights) optimize the search for sparse targets. Here we show that this popular search advantage is less universal than commonly assumed. We study the efficiency of a minimalist search model based on Levy flights in the absence and presence of an external drift (underwater current, atmospheric wind, a preference of the walker owing to prior experience, or a general bias in an abstract search space) based on two different optimization criteria with respect to minimal search time and search reliability (cumulative arrival probability). Although Levy flights turn out to be efficient search processes when the target is far from the starting point, or when relative to the starting point the target is upstream, we show that for close targets and for downstream target positioning regular Brownian motion turns out to be the advantageous search strategy. Contrary to claims that Levy flights with a critical exponent alpha = 1 are optimal for the search of sparse targets in different settings, based on our optimization parameters the optimal a may range in the entire interval (1, 2) and especially include Brownian motion as the overall most efficient search strategy. KW - search optimization KW - stochastic processes KW - Levy foraging hypothesis Y1 - 2014 U6 - https://doi.org/10.1073/pnas.1320424111 SN - 0027-8424 VL - 111 IS - 8 SP - 2931 EP - 2936 PB - National Acad. of Sciences CY - Washington ER - TY - JOUR A1 - Talukder, Srijeeta A1 - Sen, Shrabani A1 - Chakraborti, Prantik A1 - Metzler, Ralf A1 - Banik, Suman K. A1 - Chaudhury, Pinaki T1 - Breathing dynamics based parameter sensitivity analysis of hetero-polymeric DNA JF - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr N2 - We study the parameter sensitivity of hetero-polymeric DNA within the purview of DNA breathing dynamics. The degree of correlation between the mean bubble size and the model parameters is estimated for this purpose for three different DNA sequences. The analysis leads us to a better understanding of the sequence dependent nature of the breathing dynamics of hetero-polymeric DNA. Out of the 14 model parameters for DNA stability in the statistical Poland-Scheraga approach, the hydrogen bond interaction epsilon(hb)(AT) for an AT base pair and the ring factor. turn out to be the most sensitive parameters. In addition, the stacking interaction epsilon(st)(TA-TA) for an TA-TA nearest neighbor pair of base-pairs is found to be the most sensitive one among all stacking interactions. Moreover, we also establish that the nature of stacking interaction has a deciding effect on the DNA breathing dynamics, not the number of times a particular stacking interaction appears in a sequence. We show that the sensitivity analysis can be used as an effective measure to guide a stochastic optimization technique to find the kinetic rate constants related to the dynamics as opposed to the case where the rate constants are measured using the conventional unbiased way of optimization. (c) 2014 AIP Publishing LLC. Y1 - 2014 U6 - https://doi.org/10.1063/1.4869112 SN - 0021-9606 SN - 1089-7690 VL - 140 IS - 12 PB - American Institute of Physics CY - Melville ER - TY - INPR A1 - Föhlisch, Alexander A1 - de Groot, F. M. F. A1 - Odelius, Michael A1 - Techert, Simone A1 - Wernet, P. T1 - Comment on "state-dependent electron delocalization dynamics at the solute-solvent interface: soft-x-ray absorption spectroscopy and lambda b initio calculations" T2 - Physical review letters Y1 - 2014 U6 - https://doi.org/10.1103/PhysRevLett.112.129302 SN - 0031-9007 SN - 1079-7114 VL - 112 IS - 12 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Aliu, E. A1 - Aune, T. A1 - Behera, B. A1 - Beilicke, M. A1 - Benbow, W. A1 - Berger, K. A1 - Bird, R. A1 - Buckley, J. H. A1 - Bugaev, V. A1 - Cardenzana, J. V. A1 - Cerruti, M. A1 - Chen, X. A1 - Ciupik, L. A1 - Connolly, M. P. A1 - Cui, W. A1 - Duke, C. A1 - Dumm, J. A1 - Errando, M. A1 - Falcone, A. A1 - Federici, Simone A1 - Feng, Q. A1 - Finley, J. P. A1 - Fortin, P. A1 - Fortson, L. A1 - Furniss, A. A1 - Galante, N. A1 - Gillanders, G. H. A1 - Griffin, S. A1 - Griffiths, S. T. A1 - Grube, J. A1 - Gyuk, G. A1 - Hanna, D. A1 - Holder, J. A1 - Hughes, G. A1 - Humensky, T. B. A1 - Kaaret, P. A1 - Kargaltsev, Oleg A1 - Kertzman, M. A1 - Khassen, Y. A1 - Kieda, D. A1 - Krawczynski, H. A1 - Lang, M. J. A1 - Madhavan, A. S. A1 - Maier, G. A1 - Majumdar, P. A1 - McCann, A. A1 - Moriarty, P. A1 - Mukherjee, R. A1 - Nieto, D. A1 - Ong, R. A. A1 - Otte, A. N. A1 - Pandel, D. A1 - Perkins, J. S. A1 - Pohl, Manuela A1 - Popkow, A. A1 - Prokoph, H. A1 - Quinn, J. A1 - Ragan, K. A1 - Rajotte, J. A1 - Reyes, L. C. A1 - Reynolds, P. T. A1 - Richards, G. T. A1 - Roache, E. A1 - Sembroski, G. H. A1 - Skole, C. A1 - Staszak, D. A1 - Telezhinsky, Igor O. A1 - Theiling, M. A1 - Tucci, J. V. A1 - Tyler, J. A1 - Varlotta, A. A1 - Vincent, S. A1 - Wakely, S. P. A1 - Weekes, T. C. A1 - Weinstein, A. A1 - Welsing, R. A1 - Williams, D. A. A1 - Zitzer, B. T1 - Observations of the unidentified gamm-ray source TeV J2032+4130 BY Veritas JF - The astrophysical journal : an international review of spectroscopy and astronomical physics KW - gamma rays: general KW - pulsars: individual (PSR J2032+4127) Y1 - 2014 U6 - https://doi.org/10.1088/0004-637X/783/1/16 SN - 0004-637X SN - 1538-4357 VL - 783 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER -