TY - JOUR A1 - Hundertmark, Michaela A1 - Dimova, Rumiana A1 - Lengefeld, Jan A1 - Seckler, Robert A1 - Hincha, Dirk K. T1 - The intrinsically disordered late embryogenesis abundant protein LEA18 from Arabidopsis thaliana modulates membrane stability through binding and folding JF - Biochimica et biophysica acta : Biomembranes N2 - Intrinsically disordered proteins (IDPs) constitute a substantial part of cellular proteomes. late embryogenesis abundant (LEA) proteins are mostly predicted to be IDPs associated with dehydration tolerance in many plant, animal and bacterial species. Their functions, however, are largely unexplored and also their structure and interactions with potential target molecules have only recently been experimentally investigated in a small number of proteins. Here, we report on the structure and interactions with membranes of the Pfam LEA_1 protein LEA18 from the higher plant Arabidopsis thaliana. This functionally uncharacterized positively charged protein specifically aggregated and destabilized negatively charged liposomes. Isothermal titration calorimetry showed binding of the protein to both charged and uncharged membranes. LEA18 alone was largely unstructured in solution. While uncharged membranes had no influence on the secondary structure of LEA18, the protein partially folded into beta-sheet structure in the presence of negatively charged liposomes. These data suggest that LEA18 does not function as a membrane stabilizing protein, as suggested for other LEA proteins. Instead, a possible function of LEA18 could be the composition-dependent modulation of membrane stability, e.g., during signaling or vesicle-mediated transport. KW - Intrinsically disordered protein KW - Late embryogenesis abundant protein KW - Membrane stability KW - Protein-membrane interaction KW - Protein folding Y1 - 2011 U6 - https://doi.org/10.1016/j.bbamem.2010.09.010 SN - 0005-2736 VL - 1808 IS - 1 SP - 446 EP - 453 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Schenk, Paul A1 - Hamilton, Douglas P. A1 - Johnson, Robert E. A1 - McKinnon, William B. A1 - Paranicas, Chris A1 - Schmidt, Jürgen A1 - Showalter, Mark R. T1 - Plasma, plumes and rings saturn system dynamics as recorded in global color patterns on its midsize icy satellites JF - Icarus : international journal of solar system studies N2 - New global maps of the five inner midsize icy saturnian satellites, Mimas, Enceladus, Tethys, Dione, and Rhea, have been constructed in three colors (UV, Green and near-IR) at resolutions of 1 km/pixel. The maps reveal prominent global patterns common to several of these satellites but also three major color features unique to specific satellites or satellite subgroups. The most common features among the group are first-order global asymmetries in color properties. This pattern, expressed on Tethys, Dione and Rhea, takes the form of a similar to 1.4-1.8 times enhancement in redness (expressed as IR/UV ratio) of the surface at the center of the trailing hemisphere of motion, and a similar though significantly weaker IR/UV enhancement at the center of the leading hemisphere. The peak in redness on the trailing hemisphere also corresponds to a known decrease in albedo. These double hemispheric asymmetries are attributable to plasma and E-ring grain bombardment on the trailing and leading hemispheres, respectively, for the outer three satellites Tethys, Dione and Rhea, whereas as E-ring bombardment may be focused on the trailing hemisphere of Mimas due to its orbital location interior to Enceladus. The maps also reveal three major deviations from these basic global patterns. We observe the previously known dark bluish leading hemisphere equatorial band on Tethys but have also discovered a similar band on Mimas. Similar in shape, both features match the surface patterns expected for irradiation of the surface by incident MeV electrons that drift in a direction opposite to the plasma flow. The global asymmetry on Enceladus is offset similar to 40 degrees to the west compared to the other satellites. We do not consider Enceladus in detail here, but the global distribution of bluish material can be shown to match the deposition pattern predicted for plume fallback onto the surface (Kempf, S., Beckmann, U., Schmidt, S. [2010]. Icarus 206, 446-457. doi:10.1016/j.icarus.2009.09.016). E-ring deposition on Enceladus thus appears to mask or prevent the formation of the lenses and hemispheric asymmetries we see on the other satellites. Finally, we observe a chain of discrete bluish splotches along the equator of Rhea. Unlike the equatorial bands of Tethys and Mimas, these splotches form a very narrow great circle <= 10-km wide (north-to-south) and appear to be related to surface disruption, exposing fresh, bluish ice on older crater rims. This feature is unique to Rhea and may have formed by impact onto its surface of orbiting material. KW - Satellites, Surfaces KW - Saturn, Satellites KW - Saturn, Rings KW - Enceladus KW - Satellites, Composition KW - Magnetospheres Y1 - 2011 U6 - https://doi.org/10.1016/j.icarus.2010.08.016 SN - 0019-1035 VL - 211 IS - 1 SP - 740 EP - 757 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Koenig, Tobias A1 - Goldenberg, Leonid M. A1 - Kulikovska, Olga A1 - Kulikovsky, Lazar A1 - Stumpe, Joachim A1 - Santer, Svetlana T1 - Reversible structuring of photosensitive polymer films by surface plasmon near field radiation JF - Soft matter N2 - We report on the fabrication and characterisation of a novel type of hybrid azo-modified photosensitive polymer film with a nanoscale metallic structuring integrated into the substrate. The metal structures permit to generate surface plasmon near fields when irradiated by UV-light from the rear without directly illuminating the polymer. This allows establishment of a localized, complex-shape intensity distribution at sub-wavelength resolution with a corresponding impact on the photosensitive polymer. The possibilities of exploiting this setup are manifold. We find that just by using the change of polarization of the incident light as means of control, the topography can be driven to change between various patterns reversibly. These results are confirmed by numerical simulations and compared with in situ recorded topography changes. Y1 - 2011 U6 - https://doi.org/10.1039/c0sm01164a SN - 1744-683X VL - 7 IS - 9 SP - 4174 EP - 4178 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Kollosche, Matthias A1 - Stoyanov, Hristiyan A1 - Laflamme, Simon A1 - Kofod, Guggi T1 - Strongly enhanced sensitivity in elastic capacitive strain sensors JF - Journal of materials chemistry N2 - Strain sensors based on dielectric elastomer capacitors function by the direct coupling of mechanical deformations with the capacitance. The coupling can be improved by enhancing the relative permittivity of the dielectric elastomer. Here, this is carried out through the grafting of conducting polymer (poly-aniline) to the elastomer backbone, leading to molecular composites. An enhancement in capacitance response of 46 times is observed. This could help to extend the possible range of miniaturization towards even smaller device features. Y1 - 2011 U6 - https://doi.org/10.1039/c0jm03786a SN - 0959-9428 VL - 21 IS - 23 SP - 8292 EP - 8294 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Seiss, Martin A1 - Spahn, Frank T1 - Hydrodynamics of saturn's dense rings JF - Mathematical modelling of natural phenomena N2 - The space missions Voyager and Cassini together with earthbound observations revealed a wealth of structures in Saturn's rings. There are, for example, waves being excited at ring positions which are in orbital resonance with Saturn's moons. Other structures can be assigned to embedded moons like empty gaps, moon induced wakes or S-shaped propeller features. Furthermore, irregular radial structures are observed in the range from 10 meters until kilometers. Here some of these structures will be discussed in the frame of hydrodynamical modeling of Saturn's dense rings. For this purpose we will characterize the physical properties of the ring particle ensemble by mean field quantities and point to the special behavior of the transport coefficients. We show that unperturbed rings can become unstable and how diffusion acts in the rings. Additionally, the alternative streamline formalism is introduced to describe perturbed regions of dense rings with applications to the wake damping and the dispersion relation of the density waves. KW - granular gas KW - instabilities KW - hydrodynamics KW - planetary rings Y1 - 2011 U6 - https://doi.org/10.1051/mmnp/20116409 SN - 0973-5348 SN - 1760-6101 VL - 6 IS - 4 SP - 191 EP - 218 PB - EDP Sciences CY - Les Ulis ER - TY - JOUR A1 - Martin, Maria A. A1 - Winkelmann, Ricarda A1 - Haseloff, M. A1 - Albrecht, Tanja A1 - Bueler, Ed A1 - Khroulev, C. A1 - Levermann, Anders T1 - The Potsdam parallel ice sheet model (PISM-PIK) - Part 2: Dynamic equilibrium simulation of the Antarctic ice sheet JF - The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union N2 - We present a dynamic equilibrium simulation of the ice sheet-shelf system on Antarctica with the Potsdam Parallel Ice Sheet Model (PISM-PIK). The simulation is initialized with present-day conditions for bed topography and ice thickness and then run to steady state with constant present-day surface mass balance. Surface temperature and sub-shelf basal melt distribution are parameterized. Grounding lines and calving fronts are free to evolve, and their modeled equilibrium state is compared to observational data. A physically-motivated calving law based on horizontal spreading rates allows for realistic calving fronts for various types of shelves. Steady-state dynamics including surface velocity and ice flux are analyzed for whole Antarctica and the Ronne-Filchner and Ross ice shelf areas in particular. The results show that the different flow regimes in sheet and shelves, and the transition zone between them, are captured reasonably well, supporting the approach of superposition of SIA and SSA for the representation of fast motion of grounded ice. This approach also leads to a natural emergence of sliding-dominated flow in stream-like features in this new 3-D marine ice sheet model. Y1 - 2011 U6 - https://doi.org/10.5194/tc-5-727-2011 SN - 1994-0416 VL - 5 IS - 3 SP - 727 EP - 740 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Winkelmann, Ricarda A1 - Martin, Maria A. A1 - Haseloff, Monika A1 - Albrecht, Torsten A1 - Bueler, Ed A1 - Khroulev, C. A1 - Levermann, Anders T1 - The Potsdam parallel ice sheet model (PISM-PIK) - Part 1: Model description JF - The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union N2 - We present the Potsdam Parallel Ice Sheet Model (PISM-PIK), developed at the Potsdam Institute for Climate Impact Research to be used for simulations of large-scale ice sheet-shelf systems. It is derived from the Parallel Ice Sheet Model (Bueler and Brown, 2009). Velocities are calculated by superposition of two shallow stress balance approximations within the entire ice covered region: the shallow ice approximation (SIA) is dominant in grounded regions and accounts for shear deformation parallel to the geoid. The plug-flow type shallow shelf approximation (SSA) dominates the velocity field in ice shelf regions and serves as a basal sliding velocity in grounded regions. Ice streams can be identified diagnostically as regions with a significant contribution of membrane stresses to the local momentum balance. All lateral boundaries in PISM-PIK are free to evolve, including the grounding line and ice fronts. Ice shelf margins in particular are modeled using Neumann boundary conditions for the SSA equations, reflecting a hydrostatic stress imbalance along the vertical calving face. The ice front position is modeled using a subgrid-scale representation of calving front motion (Albrecht et al., 2011) and a physically-motivated calving law based on horizontal spreading rates. The model is tested in experiments from the Marine Ice Sheet Model Intercomparison Project (MISMIP). A dynamic equilibrium simulation of Antarctica under present-day conditions is presented in Martin et al. (2011). Y1 - 2011 U6 - https://doi.org/10.5194/tc-5-715-2011 SN - 1994-0416 VL - 5 IS - 3 SP - 715 EP - 726 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Sepp, T. A1 - Tempel, E. A1 - Gramann, M. A1 - Nurmi, P. A1 - Haupt, Michael T1 - Studying the patterns of the universe JF - Baltic astronomy N2 - The SDSS galaxy catalog is one of the best databases for galaxy distribution studies. The SDSS DR8 data is used to construct the galaxy cluster catalog. We construct the clusters from the calculated luminosity density field and identify denser regions. Around these peak regions we construct galaxy clusters. Another interesting question in cosmology is how observable galaxy structures are connected to underlying dark matter distribution. To study this we compare the SDSS DR7 galaxy group catalog with galaxy groups obtained from the semi-analytical Millennium N-Body simulation. Specifically, we compare the group richness, virial radius, maximum separation and velocity dispersion distributions and find a relatively good agreement between the mock catalog and observations. This strongly supports the idea, that the dark matter distribution and galaxies in the semi-analytical models and observations are very closely linked. KW - galaxies: groups, clusters KW - cosmology: dark matter, large-scale structure of the Universe Y1 - 2011 SN - 1392-0049 VL - 20 IS - 2 SP - 309 EP - 312 PB - Institute of Theoretical Physics and Astronomy CY - Moletai ER - TY - JOUR A1 - Zhirov, O. V. A1 - Pikovskij, Arkadij A1 - Shepelyansky, Dima L. T1 - Quantum vacuum of strongly nonlinear lattices JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We study the properties of classical and quantum strongly nonlinear chains by means of extensive numerical simulations. Due to strong nonlinearity, the classical dynamics of such chains remains chaotic at arbitrarily low energies. We show that the collective excitations of classical chains are described by sound waves whose decay rate scales algebraically with the wave number with a generic exponent value. The properties of the quantum chains are studied by the quantum Monte Carlo method and it is found that the low-energy excitations are well described by effective phonon modes with the sound velocity dependent on an effective Planck constant. Our results show that at low energies the quantum effects lead to a suppression of chaos and drive the system to a quasi-integrable regime of effective phonon modes. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevE.83.016202 SN - 1539-3755 VL - 83 IS - 1 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Lemr, Karel A1 - Cernoch, A. A1 - Soubusta, Jan A1 - Kieling, Konrad A1 - Eisert, Jens A1 - Dusek, M. T1 - Experimental implementation of the optimal linear-optical controlled phase gate JF - Physical review letters N2 - We report on the first experimental realization of optimal linear-optical controlled phase gates for arbitrary phases. The realized scheme is entirely flexible in that the phase shift can be tuned to any given value. All such controlled phase gates are optimal in the sense that they operate at the maximum possible success probabilities that are achievable within the framework of postselected linear-optical implementations with vacuum ancillas. The quantum gate is implemented by using bulk optical elements and polarization encoding of qubit states. We have experimentally explored the remarkable observation that the optimum success probability is not monotone in the phase. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevLett.106.013602 SN - 0031-9007 VL - 106 IS - 1 PB - American Physical Society CY - College Park ER -