TY - JOUR A1 - Fudickar, Werner A1 - Linker, Torsten T1 - Structural motives controlling the binding affinity of 9,10-bis(methylpyridinium)anthracenes towards DNA JF - Bioorganic & medicinal chemistry : a Tetrahedron publication for the rapid dissemination of full original research papers and critical reviews on biomolecular chemistry, medicinal chemistry and related disciplines N2 - In the search of new DNA groove binding agents a series of substituted 9,10-methylpyridiniumanthracenes have been synthesized and their interactions with DNA have been studied by UV/vis absorption, CD and fluorescence spectroscopy. A minor groove binding mode is confirmed by DNA melting studies, strong CD effects, the dependence of the binding affinity on ionic strength, and the differentiation between AT and GC base pairs. No binding occurs to GC sequences. Binding constants to calf thymus DNA (ct-DNA) and poly(dA:dT) in the range between 1 x 10(4) and 3 x 10(5) M-1 have been determined. The binding strength decreases with the size of substituents attached at the anthracene site. Variation of the substitution pattern of the charged groups shows that methyl groups in meta position cause slightly stronger binding than methyl groups in para position. In contrast, with these groups in ortho position, no binding interaction has been observed. The strongest binding is achieved with an expansion of the peripheral heterocycle from pyridine to quinoline. Molecular modeling reveals the pivotal role of the substitution pattern: Anthracenes with para and meta pyridines align along the minor grooves. On the other hand, the ortho derivative adopts no groove-alignment. KW - groove binding KW - anthracenes KW - ct-DNA KW - fluorescence enhancement KW - docking Y1 - 2020 U6 - https://doi.org/10.1016/j.bmc.2020.115432 SN - 0968-0896 SN - 1464-3391 VL - 28 IS - 8 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Fudickar, Werner A1 - Linker, Torsten T1 - Release of Singlet Oxygen from Aromatic Endoperoxides by Chemical Triggers JF - Angewandte Chemie : a journal of the Gesellschaft Deutscher Chemiker ; International edition N2 - The generation of reactive singlet oxygen under mild conditions is of current interest in chemistry, biology, and medicine. We were able to release oxygen from dipyridylanthracene endoperoxides (EPOs) by using a simple chemical trigger at low temperature. Protonation and methylation of such EPOs strongly accelerated these reactions. Furthermore, the methyl pyridinium derivatives are water soluble and therefore serve as oxygen carriers in aqueous media. Methylation of the EPO of the ortho isomer affords the parent form directly without increasing the temperature under very mild conditions. This exceptional behavior is ascribed to the close contact between the nitrogen atom and the peroxo group. Singlet oxygen is released upon this reaction, and can be used to oxygenate an acceptor such as tetramethylethylene in the dark with no heating. Thus, a new chemical source of singlet oxygen has been found, which is triggered by a simple stimulus. KW - anthracenes KW - donor-acceptor systems KW - mild reaction conditions KW - selective oxidations KW - singlet oxygen Y1 - 2018 U6 - https://doi.org/10.1002/anie.201806881 SN - 1433-7851 SN - 1521-3773 VL - 57 IS - 39 SP - 12971 EP - 12975 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Fudickar, Werner A1 - Linker, Torsten T1 - Theoretical insights into the effect of solvents on the [4+2] cycloaddition of singlet oxygen to substituted anthracenes BT - A change from a stepwise process to a concerted process JF - Journal of physical organic chemistry N2 - The [4 + 2] cycloadditions of singlet oxygen to 9,10-diphenylanthracene (1) and the meta and para isomers of 9,10-dipyridylanthracene (2m/p) and 9,10-methoxyphenylanthracene (3m/p) have been studied by density functional calculations in the gas phase at the UB3LYP/6-31G* level and for the first time in solvents at the conductor-like polarizable continuum model (CPCM) UM062X/6-31G* level. The differences in calculated transition state (TS) energies derived from this method are in line with experimentally observed reactivity orders in solution. For the gas-phase reaction, the first TS of the stepwise pathway (TS1) has biradical character, and its energy lies below the energy of the TS of the concerted path (TSconc). In contrast, in the solvent acetonitrile, TS1 resembles a zwitterion and lies significantly higher than the TSconc. Thus, a concerted mechanism applies in solvents, and the energy gap between the TS of the two processes decreases with decreasing polarity. A change from a pyridyl against a methoxyphenyl substituent in the para position causes a maximal reduction of the activation barrier by approximately 1.7 kcal/mol, resulting in a fivefold increased reactivity. KW - anthracenes KW - DFT calculations KW - endoperoxides KW - photooxygenation KW - singlet oxygen KW - solvent effect Y1 - 2019 U6 - https://doi.org/10.1002/poc.3951 SN - 0894-3230 SN - 1099-1395 VL - 32 IS - 7 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Fudickar, Werner A1 - Linker, Torsten T1 - Imaging by sensitized oxygenations of photochromic anthracene films BT - Examination of effects that improve performance and reversibility JF - Chemistry - a European journal N2 - The aliphatic anthracene compound 1 and the oligomeric anthracene 2 were synthesized. Thin films of 1 and 2 mixed with the sensitizers tetraphenylporphyrin (TPP) and methylene blue (MB) were irradiated with visible light in air. Upon formation of singlet oxygen, the anthracene units were converted quantitatively to the corresponding endoperoxides. Heating of the irradiated samples afforded the parent anthracenes with high yields. Here, we demonstrate that the kinetics and reversibility of this reaction strongly depend on the microenvironment of the anthracene groups in the two compounds. The photooxidation of thin films of I is accompanied by interesting changes in the morphology of the film and allows the first application of 1 as a nondestructive negative-tone photo-resist for lithography and as an oxidizing ink. The morphology of 2 remained unchanged after photooxidation as a result of the stabilizing oligomer backbone. This stabilizing effect significantly improves the photochromic performance of 2. The reversibility of the photooxidation is very high (> 90%) for oligomeric films of 2 after several cycles of irradiation and beating. Decomposition of the anthracene and a loss of the activity of the sensitizer diminish slightly the performance of the monomeric species. KW - anthracenes KW - lithography KW - photochromism KW - singlet oxygen KW - thin films Y1 - 2006 U6 - https://doi.org/10.1002/chem.200600387 SN - 0947-6539 VL - 12 SP - 9276 EP - 9283 PB - WILEY‐VCH CY - Weinheim ER - TY - JOUR A1 - Fudickar, Werner A1 - Linker, Torsten T1 - Reversible Photooxygenation of Alkynylanthracenes chemical generation of singlet oxygen under very mild conditions JF - Chemistry - a European journal KW - anthracenes KW - oxidation KW - peroxides KW - reversibility KW - singlet oxygen Y1 - 2011 U6 - https://doi.org/10.1002/chem.201102230 SN - 0947-6539 VL - 17 IS - 49 SP - 13661 EP - 13664 PB - Wiley-VCH CY - Weinheim ER -