TY - JOUR A1 - Zhong, Qi A1 - Wang, Weinan A1 - Adelsberger, Joseph A1 - Golosova, Anastasia A1 - Koumba, Achille M. Bivigou A1 - Laschewsky, André A1 - Funari, Sergio S. A1 - Perlich, Jan A1 - Roth, Stephan V. A1 - Papadakis, Christine M. A1 - Müller-Buschbaum, Peter T1 - Collapse transition in thin films of poly(methoxydiethylenglycol acrylate) JF - Colloid and polymer science : official journal of the Kolloid-Gesellschaft N2 - The thermal behavior of poly(methoxydiethylenglycol acrylate) (PMDEGA) is studied in thin hydrogel films on solid supports and is compared with the behavior in aqueous solution. The PMDEGA hydrogel film thickness is varied from 2 to 422 nm. Initially, these films are homogenous, as measured with optical microscopy, atomic force microscopy, X-ray reflectivity, and grazing-incidence small-angle X-ray scattering (GISAXS). However, they tend to de-wet when stored under ambient conditions. Along the surface normal, no long-ranged correlations between substrate and film surface are detected with GISAXS, due to the high mobility of the polymer at room temperature. The swelling of the hydrogel films as a function of the water vapor pressure and the temperature are probed for saturated water vapor pressures between 2,380 and 3,170 Pa. While the swelling capability is found to increase with water vapor pressure, swelling in dependence on the temperature revealed a collapse phase transition of a lower critical solution temperature type. The transition temperature decreases from 40.6 A degrees C to 36.6 A degrees C with increasing film thickness, but is independent of the thickness for very thin films below a thickness of 40 nm. The observed transition temperature range compares well with the cloud points observed in dilute (0.1 wt.%) and semi-dilute (5 wt.%) solution which decrease from 45 A degrees C to 39 A degrees C with increasing concentration. KW - Hydrogel KW - Thin film KW - Thermoresponsive KW - LCST behavior KW - GISAXS KW - AFM Y1 - 2011 U6 - https://doi.org/10.1007/s00396-011-2384-1 SN - 0303-402X VL - 289 IS - 5-6 SP - 569 EP - 581 PB - Springer CY - New York ER - TY - JOUR A1 - Zhirov, O. V. A1 - Pikovskij, Arkadij A1 - Shepelyansky, Dima L. T1 - Quantum vacuum of strongly nonlinear lattices JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We study the properties of classical and quantum strongly nonlinear chains by means of extensive numerical simulations. Due to strong nonlinearity, the classical dynamics of such chains remains chaotic at arbitrarily low energies. We show that the collective excitations of classical chains are described by sound waves whose decay rate scales algebraically with the wave number with a generic exponent value. The properties of the quantum chains are studied by the quantum Monte Carlo method and it is found that the low-energy excitations are well described by effective phonon modes with the sound velocity dependent on an effective Planck constant. Our results show that at low energies the quantum effects lead to a suppression of chaos and drive the system to a quasi-integrable regime of effective phonon modes. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevE.83.016202 SN - 1539-3755 VL - 83 IS - 1 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Zakrevskyy, Yuriy A1 - Kopyshev, Alexey A1 - Lomadze, Nino A1 - Morozova, Elena A1 - Lysyakova, Liudmila A1 - Kasyanenko, Nina A1 - Santer, Svetlana T1 - DNA compaction by azobenzene-containing surfactant JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We report on the interaction of cationic azobenzene-containing surfactant with DNA investigated by absorption and fluorescence spectroscopy, dynamic light scattering, and atomic force microscopy. The properties of the surfactant can be controlled with light by reversible switching of the azobenzene unit, incorporated into the surfactant tail, between a hydrophobic trans (visible irradiation) and a hydrophilic cis (UV irradiation) configuration. The influence of the trans-cis isomerization of the azobenzene on the compaction process of DNA molecules and the role of both isomers in the formation and colloidal stability of DNA-surfactant complexes is discussed. It is shown that the trans isomer plays a major role in the DNA compaction process. The influence of the cis isomer on the DNA coil configuration is rather small. The construction of a phase diagram of the DNA concentration versus surfactant/DNA charge ratio allows distancing between three major phases: colloidally stable and unstable compacted globules, and extended coil conformation. There is a critical concentration of DNA above which the compacted globules can be hindered from aggregation and precipitation by adding an appropriate amount of the surfactant in the trans configuration. This is because of the compensation of hydrophobicity of the globules with an increasing amount of the surfactant. Below the critical DNA concentration, the compacted globules are colloidally stable and can be reversibly transferred with light to an extended coil state. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevE.84.021909 SN - 1539-3755 VL - 84 IS - 2 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Zakharova, Anna A1 - Kurths, Jürgen A1 - Vadivasova, Tatyana A1 - Koseska, Aneta T1 - Analysing dynamical behavior of cellular networks via stochastic bifurcations JF - PLoS one N2 - The dynamical structure of genetic networks determines the occurrence of various biological mechanisms, such as cellular differentiation. However, the question of how cellular diversity evolves in relation to the inherent stochasticity and intercellular communication remains still to be understood. Here, we define a concept of stochastic bifurcations suitable to investigate the dynamical structure of genetic networks, and show that under stochastic influence, the expression of given proteins of interest is defined via the probability distribution of the phase variable, representing one of the genes constituting the system. Moreover, we show that under changing stochastic conditions, the probabilities of expressing certain concentration values are different, leading to different functionality of the cells, and thus to differentiation of the cells in the various types. Y1 - 2011 U6 - https://doi.org/10.1371/journal.pone.0019696 SN - 1932-6203 VL - 6 IS - 5 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Worseck, Gabor A1 - Prochaska, J. Xavier A1 - McQuinn, Matthew A1 - Dall'Aglio, Aldo A1 - Fechner, Cora A1 - Hennawi, Joseph F. A1 - Reimers, Dieter A1 - Richter, Philipp A1 - Wisotzki, Lutz T1 - The end of Helium Reionization at z similar or equal to 2.7 Inferred from cosmic variance in HST/COS He II Ly alpha Absorption spectra JF - The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters N2 - We report on the detection of strongly varying intergalactic He II absorption in HST/COS spectra of two z(em) similar or equal to 3 quasars. From our homogeneous analysis of the He II absorption in these and three archival sightlines, we find a marked increase in the mean He II effective optical depth from similar or equal to 1 at z similar or equal to 2.3 to greater than or similar to 5 at z similar or equal to 3.2, but with a large scatter of 2 less than or similar to tau(eff, He II) less than or similar to 5 at 2.7 < z < 3 on scales of similar to 10 proper Mpc. This scatter is primarily due to fluctuations in the He II fraction and the He II-ionizing background, rather than density variations that are probed by the coeval Hi forest. Semianalytic models of He II absorption require a strong decrease in the He II-ionizing background to explain the strong increase of the absorption at z greater than or similar to 2.7, probably indicating He II reionization was incomplete at z(reion) greater than or similar to 2.7. Likewise, recent three-dimensional numerical simulations of He II reionization qualitatively agree with the observed trend only if He II reionization completes at z(reion) similar or equal to 2.7 or even below, as suggested by a large tau(eff, He II) greater than or similar to 3 in two of our five sightlines at z < 2.8. By doubling the sample size at 2.7 less than or similar to z less than or similar to 3, our newly discovered He II sightlines for the first time probe the diversity of the second epoch of reionization when helium became fully ionized. KW - dark ages, reionization, first stars KW - diffuse radiation KW - intergalactic medium KW - quasars: absorption lines KW - quasars: individual (SDSS J092447.36+485242.8, SDSS J110155.74+105302.3) Y1 - 2011 U6 - https://doi.org/10.1088/2041-8205/733/2/L24 SN - 2041-8205 VL - 733 IS - 2 PB - IOP Publ. Ltd. CY - Bristol ER - TY - THES A1 - Winkler, Michael T1 - Thinning and turbulence in aqueous films N2 - This thesis covers the topic ”Thinning and Turbulence in Aqueous Films”. Experimental studies in two-dimensional systems gained an increasing amount of attention during the last decade. Thin liquid films serve as paradigms of atmospheric convection, thermal convection in the Earth’s mantle or turbulence in magnetohydrodynamics. Recent research on colloids, interfaces and nanofluids lead to advances in the developtment of micro-mixers (lab-on-a-chip devices). In this project a detailed description of a thin film experiment with focus on the particular surface forces is presented. The impact of turbulence on the thinning of liquid films which are oriented parallel to the gravitational force is studied. An experimental setup was developed which permits the capturing of thin film interference patterns under controlled surface and atmospheric conditions. The measurement setup also serves as a prototype of a mixer on the basis of thermally induced turbulence in liquid thin films with thicknesses in the nanometer range. The convection is realized by placing a cooled copper rod in the center of the film. The temperature gradient between the rod and the atmosphere results in a density gradient in the liquid film, so that different buoyancies generate turbulence. In the work at hand the thermally driven convection is characterized by a newly developed algorithm, named Cluster Imaging Velocimetry (CIV). This routine determines the flow relevant vector fields (velocity and deformation). On the basis of these insights the flow in the experiment was investigated with respect to its mixing properties. The mixing characteristics were compared to theoretical models and mixing efficiency of the flow scheme calculated. The gravitationally driven thinning of the liquid film was analyzed under the influence of turbulence. Strong shear forces lead to the generation of ultra-thin domains which consist of Newton black film. Due to the exponential expansion of the thin areas and the efficient mixing, this two-phase flow rapidly turns into the convection of only ultra-thin film. This turbulence driven transition was observed and quantified for the first time. The existence of stable convection in liquid nanofilms was proven for the first time in the context of this work. N2 - Diese Diplomarbeit behandelt das Thema ”Dünnung und Turbulenz in wässrigen Filmen”. Experimente in zweidimensionalen Systemen erfuhren in den vergangenen Jahren zunehmend an Aufmerksamkeit. Dünne Flüssigkeitsschichten dienen als Modell für atmosphärische Konvektion, thermische Konvektion im Erdmantel oder Turbulenz in der Magnetohydrodynamik. Aktuelle Forschung im Bereich der Kolloide, Grenzflächen und Nanofluidik führt zu Fortschritten in der Entwicklung von Mikromixern (”lab-on-a-chip”). In diesem Projekt wird eine detaillierte Beschreibung eines Dünnfilmexperiments mit Fokus auf die besonderen Oberflächenkräfte vorgestellt. Die Auswirkung der Turbulenz auf die Dünnung von parallel zur Gravitationskraft orientierten Flüssigkeitsschichten wurde untersucht. Es wurde ein Experiment entwickelt, welches die Aufnahme von Dünnschichtinterferenzmustern unter kontrollierten Oberflächenbedingungen und Atmosphäre erlaubt. Der Messaufbau dient auch als Prototyp eines Mixers auf Basis von thermisch induzierter Turbulenz in Flüssigkeitsfilmen mit Dicken im Nanometerbereich. Die Konvektion wird durch das Platzieren eines gekühlten Kupferstabs in der Mitte des Films realisiert. Der Temperaturgradient zwischen Stab und äußerer Atmosphäre resultiert in einem Dichtegradienten in dem flüssigen Film, sodass durch unterschiedliche Auftriebskräfte Turbulenz erzeugt wird. In der vorliegenden Arbeit ist die thermisch getriebenen Konvektion an Hand eines neu entwickelten Verfahrens (Cluster Imaging Velocimetry - CIV) zur Ermittlung des strömungsrelevanten Vektorfelder (Geschwindigkeit und Deformation) charakterisiert worden. Auf Basis dieser Erkenntnisse wurde die im Experiment vorherrschende Strömung in Hinsicht auf ihre Mischungseigenschaften im Vergleich zu theoretischen Modellen untersucht und die Mischungseffizienz berechnet. Die gravitationsgetriebene Ausdünnung der Flüssigkeitsschicht unter Einfluss der Turbulenz wurde analysiert. Durch starke Scherkräfte kommt es lokal zur Bildung ultradünner Domänen bestehend aus ”Newton black film”. Diese Zweiphasenströmung geht durch das exponentielle Ausdehnen der dünnen Bereiche und die effiziente Mischung sehr schnell in eine Konvektion von ausschließlich ultradünnem Film im Gleichgewichtszustand über. Dieser turbulenzgetriebene Übergang wurde zum ersten Mal beobachtet und quantifiziert. Die Existenz stabiler Konvektion in flüssigen Nanofilmen ist zum ersten Mal im Rahmen dieser Arbeit belegt worden. KW - wässrige Filme KW - Nanofluid KW - Mischung KW - Konvektion KW - Dünnung KW - Thin Film KW - Nanofluid KW - Mixing KW - Convection KW - Rapid thinning Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-53107 ER - TY - JOUR A1 - Winkelmann, Ricarda A1 - Martin, Maria A. A1 - Haseloff, Monika A1 - Albrecht, Torsten A1 - Bueler, Ed A1 - Khroulev, C. A1 - Levermann, Anders T1 - The Potsdam parallel ice sheet model (PISM-PIK) - Part 1: Model description JF - The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union N2 - We present the Potsdam Parallel Ice Sheet Model (PISM-PIK), developed at the Potsdam Institute for Climate Impact Research to be used for simulations of large-scale ice sheet-shelf systems. It is derived from the Parallel Ice Sheet Model (Bueler and Brown, 2009). Velocities are calculated by superposition of two shallow stress balance approximations within the entire ice covered region: the shallow ice approximation (SIA) is dominant in grounded regions and accounts for shear deformation parallel to the geoid. The plug-flow type shallow shelf approximation (SSA) dominates the velocity field in ice shelf regions and serves as a basal sliding velocity in grounded regions. Ice streams can be identified diagnostically as regions with a significant contribution of membrane stresses to the local momentum balance. All lateral boundaries in PISM-PIK are free to evolve, including the grounding line and ice fronts. Ice shelf margins in particular are modeled using Neumann boundary conditions for the SSA equations, reflecting a hydrostatic stress imbalance along the vertical calving face. The ice front position is modeled using a subgrid-scale representation of calving front motion (Albrecht et al., 2011) and a physically-motivated calving law based on horizontal spreading rates. The model is tested in experiments from the Marine Ice Sheet Model Intercomparison Project (MISMIP). A dynamic equilibrium simulation of Antarctica under present-day conditions is presented in Martin et al. (2011). Y1 - 2011 U6 - https://doi.org/10.5194/tc-5-715-2011 SN - 1994-0416 VL - 5 IS - 3 SP - 715 EP - 726 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Winkel, B. A1 - Ben Bekhti, Nadya A1 - Darmstaedter, V. A1 - Floeer, L. A1 - Kerp, J. A1 - Richter, Philipp T1 - The high-velocity cloud complex Galactic center negative as seen by EBHIS and GASS I. Cloud catalog and global properties JF - Astronomy and astrophysics : an international weekly journal N2 - Using Milky Way data of the new Effelsberg-Bonn HI Survey (EBHIS) and the Galactic All-Sky Survey (GASS), we present a revised picture of the high-velocity cloud (HVC) complex Galactic center negative (GCN). Owing to the higher angular resolution of these surveys compared to previous studies (e.g., the Leiden Dwingeloo Survey), we resolve complex GCN into lots of individual tiny clumps, that mostly have relatively broad line widths of more than 15 km s(-1). We do not detect a diffuse extended counterpart, which is unusual for an HVC complex. In total 243 clumps were identified and parameterized which allows us to statistically analyze the data. Cold-line components (i.e.,Delta upsilon(fwhm) < 7.5 km s(-1)) are found in about 5% only of the identified cloudlets. Our analysis reveals that complex GCN is likely built up of several subpopulations that do not share a common origin. Furthermore, complex GCN might be a prime example for warm-gas accretion onto the Milky Way, where neutral HI clouds are not stable against interaction with the Milky Way gas halo and become ionized prior to accretion. KW - ISM: clouds KW - Galaxy: halo Y1 - 2011 U6 - https://doi.org/10.1051/0004-6361/201117357 SN - 0004-6361 VL - 533 IS - 18 PB - EDP Sciences CY - Les Ulis ER - TY - JOUR A1 - Valleriani, Angelo A1 - Zhang, Gong A1 - Nagar, Apoorva A1 - Ignatova, Zoya A1 - Lipowsky, Reinhard T1 - Length-dependent translation of messenger RNA by ribosomes JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - A simple measure for the efficiency of protein synthesis by ribosomes is provided by the steady state amount of protein per messenger RNA (mRNA), the so-called translational ratio, which is proportional to the translation rate. Taking the degradation of mRNA into account, we show theoretically that both the translation rate and the translational ratio decrease with increasing mRNA length, in agreement with available experimental data for the prokaryote Escherichia coli. We also show that, compared to prokaryotes, mRNA degradation in eukaryotes leads to a less rapid decrease of the translational ratio. This finding is consistent with the fact that, compared to prokaryotes, eukaryotes tend to have longer proteins. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevE.83.042903 SN - 1539-3755 VL - 83 IS - 4 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Turukina, L. V. A1 - Pikovskij, Arkadij T1 - Hyperbolic chaos in a system of resonantly coupled weakly nonlinear oscillators JF - Modern physics letters : A, Particles and fields, gravitation, cosmology, nuclear physics N2 - We show that a hyperbolic chaos can be observed in resonantly coupled oscillators near a Hopf bifurcation, described by normal-form-type equations for complex amplitudes. The simplest example consists of four oscillators, comprising two alternatively activated, due to an external periodic modulation, pairs. In terms of the stroboscopic Poincare map, the phase differences change according to an expanding Bernoulli map that depends on the coupling type. Several examples of hyperbolic chaos for different types of coupling are illustrated numerically. KW - Coupled oscillators KW - Hyperbolic chaos Y1 - 2011 U6 - https://doi.org/10.1016/j.physleta.2011.02.017 SN - 0375-9601 VL - 375 IS - 11 SP - 1407 EP - 1411 PB - Elsevier CY - Amsterdam ER -