TY - JOUR A1 - Leonhardt, Helmar A1 - Gerhardt, Matthias A1 - Hoeppner, Nadine A1 - Krüger, Kirsten A1 - Tarantola, Marco A1 - Beta, Carsten T1 - Cell-substrate impedance fluctuations of single amoeboid cells encode cell-shape and adhesion dynamics JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We show systematic electrical impedance measurements of single motile cells on microelectrodes. Wild-type cells and mutant strains were studied that differ in their cell-substrate adhesion strength. We recorded the projected cell area by time-lapse microscopy and observed irregular oscillations of the cell shape. These oscillations were correlated with long-term variations in the impedance signal. Superposed to these long-term trends, we observed fluctuations in the impedance signal. Their magnitude clearly correlated with the adhesion strength, suggesting that strongly adherent cells display more dynamic cell-substrate interactions. Y1 - 2016 U6 - https://doi.org/10.1103/PhysRevE.93.012414 SN - 2470-0045 SN - 2470-0053 VL - 93 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Beta, Carsten T1 - To turn or not to turn? JF - NEW JOURNAL OF PHYSICS N2 - Bacteria typically swim in straight runs, interruped by sudden turning events. In particular, some species are limited to a reversal in the swimming direction as the only turning maneuver at their disposal. In a recent article, Grossmann et al (2016 New J. Phys. 18 043009) introduce a theoretical framework to analyze the diffusive properties of active particles following this type of run-and-reverse pattern. Based on a stochastic clock model to mimic the regulatory pathway that triggers reversal events, they show that a run-and-reverse swimmer can optimize its diffusive spreading by tuning the reversal rate according to the level of rotational noise. With their approach, they open up promising new perspectives of how to incorporate the dynamics of intracellular signaling into coarse-grained active particle descriptions. KW - bacterial swimming KW - random walks KW - diffusion KW - stochastic models Y1 - 2016 U6 - https://doi.org/10.1088/1367-2630/18/5/051003 SN - 1367-2630 VL - 18 SP - 1 EP - 17 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Negrete, Jose A1 - Pumir, Alain A1 - Hsu, Hsin-Fang A1 - Westendorf, Christian A1 - Tarantola, Marco A1 - Beta, Carsten A1 - Bodenschatz, Eberhard T1 - Noisy Oscillations in the Actin Cytoskeleton of Chemotactic Amoeba JF - Physical review letters N2 - Biological systems with their complex biochemical networks are known to be intrinsically noisy. Here we investigate the dynamics of actin polymerization of amoeboid cells, which are close to the onset of oscillations. We show that the large phenotypic variability in the polymerization dynamics can be accurately captured by a generic nonlinear oscillator model in the presence of noise. We determine the relative role of the noise with a single dimensionless, experimentally accessible parameter, thus providing a quantitative description of the variability in a population of cells. Our approach, which rests on a generic description of a system close to a Hopf bifurcation and includes the effect of noise, can characterize the dynamics of a large class of noisy systems close to an oscillatory instability. Y1 - 2016 U6 - https://doi.org/10.1103/PhysRevLett.117.148102 SN - 0031-9007 SN - 1079-7114 VL - 117 PB - American Physical Society CY - College Park ER - TY - GEN A1 - Berenstein, Igal A1 - Beta, Carsten A1 - De Decker, Yannick T1 - Comment on "Flow-induced arrest of spatiotemporal chaos and transition to a stationary pattern in the Gray-Scott model" T2 - Physical review : E, Statistical, nonlinear and soft matter physics N2 - In this Comment, we review the results of pattern formation in a reaction-diffusion-advection system following the kinetics of the Gray-Scott model. A recent paper by Das [Phys. Rev. E 92, 052914 (2015)] shows that spatiotemporal chaos of the intermittency type can disappear as the advective flow is increased. This study, however, refers to a single point in the space of kinetic parameters of the original Gray-Scott model. Here we show that the wealth of patterns increases substantially as some of these parameters are changed. In addition to spatiotemporal intermittency, defect-mediated turbulence can also be found. In all cases, however, the chaotic behavior is seen to disappear as the advective flow is increased, following a scenario similar to what was reported in our earlier work [I. Berenstein and C. Beta, Phys. Rev. E 86, 056205 (2012)] as well as by Das. We also point out that a similar phenomenon can be found in other reaction-diffusion-advection models, such as the Oregonator model for the Belousov-Zhabotinsky reaction under flow conditions. Y1 - 2016 U6 - https://doi.org/10.1103/PhysRevE.94.046201 SN - 2470-0045 SN - 2470-0053 VL - 94 PB - American Physical Society CY - College Park ER - TY - GEN A1 - Niedl, Robert Raimund A1 - Berenstein, Igal A1 - Beta, Carsten T1 - How imperfect mixing and differential diffusion accelerate the rate of nonlinear reactions in microfluidic channels N2 - In this paper, we show experimentally that inside a microfluidic device, where the reactants are segregated, the reaction rate of an autocatalytic clock reaction is accelerated in comparison to the case where all the reactants are well mixed. We also find that, when mixing is enhanced inside the microfluidic device by introducing obstacles into the flow, the clock reaction becomes slower in comparison to the device where mixing is less efficient. Based on numerical simulations, we show that this effect can be explained by the interplay of nonlinear reaction kinetics (cubic autocatalysis) and differential diffusion, where the autocatalytic species diffuses slower than the substrate. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 253 KW - arsenious acid KW - fronts KW - paper KW - poly(dimethylsiloxane) KW - scale KW - systems Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-95810 SP - 6451 EP - 6457 ER - TY - JOUR A1 - Niedl, Robert Raimund A1 - Berenstein, Igal A1 - Beta, Carsten T1 - How imperfect mixing and differential diffusion accelerate the rate of nonlinear reactions in microfluidic channels JF - Physical chemistry, chemical physics : PCCP ; a journal of European Chemical Societies N2 - In this paper, we show experimentally that inside a microfluidic device, where the reactants are segregated, the reaction rate of an autocatalytic clock reaction is accelerated in comparison to the case where all the reactants are well mixed. We also find that, when mixing is enhanced inside the microfluidic device by introducing obstacles into the flow, the clock reaction becomes slower in comparison to the device where mixing is less efficient. Based on numerical simulations, we show that this effect can be explained by the interplay of nonlinear reaction kinetics (cubic autocatalysis) and differential diffusion, where the autocatalytic species diffuses slower than the substrate. KW - arsenious acid KW - systems KW - poly(dimethylsiloxane) KW - fronts KW - scale KW - paper Y1 - 2016 U6 - https://doi.org/10.1039/c6cp00224b SN - 1463-9076 SN - 1463-9084 VL - 18 SP - 6451 EP - 6457 PB - Royal Society of Chemistry CY - Cambridge ER -