TY - JOUR A1 - Bläsius, Thomas A1 - Friedrich, Tobias A1 - Lischeid, Julius A1 - Meeks, Kitty A1 - Schirneck, Friedrich Martin T1 - Efficiently enumerating hitting sets of hypergraphs arising in data profiling JF - Journal of computer and system sciences : JCSS N2 - The transversal hypergraph problem asks to enumerate the minimal hitting sets of a hypergraph. If the solutions have bounded size, Eiter and Gottlob [SICOMP'95] gave an algorithm running in output-polynomial time, but whose space requirement also scales with the output. We improve this to polynomial delay and space. Central to our approach is the extension problem, deciding for a set X of vertices whether it is contained in any minimal hitting set. We show that this is one of the first natural problems to be W[3]-complete. We give an algorithm for the extension problem running in time O(m(vertical bar X vertical bar+1) n) and prove a SETH-lower bound showing that this is close to optimal. We apply our enumeration method to the discovery problem of minimal unique column combinations from data profiling. Our empirical evaluation suggests that the algorithm outperforms its worst-case guarantees on hypergraphs stemming from real-world databases. KW - Data profiling KW - Enumeration algorithm KW - Minimal hitting set KW - Transversal hypergraph KW - Unique column combination KW - W[3]-Completeness Y1 - 2022 U6 - https://doi.org/10.1016/j.jcss.2021.10.002 SN - 0022-0000 SN - 1090-2724 VL - 124 SP - 192 EP - 213 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Schlosser, Rainer A1 - Chenavaz, Régis Y. A1 - Dimitrov, Stanko T1 - Circular economy BT - joint dynamic pricing and recycling investments JF - International journal of production economics N2 - In a circular economy, the use of recycled resources in production is a key performance indicator for management. Yet, academic studies are still unable to inform managers on appropriate recycling and pricing policies. We develop an optimal control model integrating a firm's recycling rate, which can use both virgin and recycled resources in the production process. Our model accounts for recycling influence both at the supply- and demandsides. The positive effect of a firm's use of recycled resources diminishes over time but may increase through investments. Using general formulations for demand and cost, we analytically examine joint dynamic pricing and recycling investment policies in order to determine their optimal interplay over time. We provide numerical experiments to assess the existence of a steady-state and to calculate sensitivity analyses with respect to various model parameters. The analysis shows how to dynamically adapt jointly optimized controls to reach sustainability in the production process. Our results pave the way to sounder sustainable practices for firms operating within a circular economy. KW - Dynamic pricing KW - Recycling investments KW - Optimal control KW - General demand function KW - Circular economy Y1 - 2021 U6 - https://doi.org/10.1016/j.ijpe.2021.108117 SN - 0925-5273 SN - 1873-7579 VL - 236 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Thienen, Julia von A1 - Weinstein, Theresa Julia A1 - Meinel, Christoph T1 - Creative metacognition in design thinking BT - exploring theories, educational practices, and their implications for measurement JF - Frontiers in psychology N2 - Design thinking is a well-established practical and educational approach to fostering high-level creativity and innovation, which has been refined since the 1950s with the participation of experts like Joy Paul Guilford and Abraham Maslow. Through real-world projects, trainees learn to optimize their creative outcomes by developing and practicing creative cognition and metacognition. This paper provides a holistic perspective on creativity, enabling the formulation of a comprehensive theoretical framework of creative metacognition. It focuses on the design thinking approach to creativity and explores the role of metacognition in four areas of creativity expertise: Products, Processes, People, and Places. The analysis includes task-outcome relationships (product metacognition), the monitoring of strategy effectiveness (process metacognition), an understanding of individual or group strengths and weaknesses (people metacognition), and an examination of the mutual impact between environments and creativity (place metacognition). It also reviews measures taken in design thinking education, including a distribution of cognition and metacognition, to support students in their development of creative mastery. On these grounds, we propose extended methods for measuring creative metacognition with the goal of enhancing comprehensive assessments of the phenomenon. Proposed methodological advancements include accuracy sub-scales, experimental tasks where examinees explore problem and solution spaces, combinations of naturalistic observations with capability testing, as well as physiological assessments as indirect measures of creative metacognition. KW - accuracy KW - creativity KW - design thinking KW - education KW - measurement KW - metacognition KW - innovation KW - framework Y1 - 2023 U6 - https://doi.org/10.3389/fpsyg.2023.1157001 SN - 1664-1078 VL - 14 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Belaid, Mohamed Karim A1 - Rabus, Maximilian A1 - Krestel, Ralf T1 - CrashNet BT - an encoder-decoder architecture to predict crash test outcomes JF - Data mining and knowledge discovery N2 - Destructive car crash tests are an elaborate, time-consuming, and expensive necessity of the automotive development process. Today, finite element method (FEM) simulations are used to reduce costs by simulating car crashes computationally. We propose CrashNet, an encoder-decoder deep neural network architecture that reduces costs further and models specific outcomes of car crashes very accurately. We achieve this by formulating car crash events as time series prediction enriched with a set of scalar features. Traditional sequence-to-sequence models are usually composed of convolutional neural network (CNN) and CNN transpose layers. We propose to concatenate those with an MLP capable of learning how to inject the given scalars into the output time series. In addition, we replace the CNN transpose with 2D CNN transpose layers in order to force the model to process the hidden state of the set of scalars as one time series. The proposed CrashNet model can be trained efficiently and is able to process scalars and time series as input in order to infer the results of crash tests. CrashNet produces results faster and at a lower cost compared to destructive tests and FEM simulations. Moreover, it represents a novel approach in the car safety management domain. KW - Predictive models KW - Time series analysis KW - Supervised deep neural KW - networks KW - Car safety management Y1 - 2021 U6 - https://doi.org/10.1007/s10618-021-00761-9 SN - 1384-5810 SN - 1573-756X VL - 35 IS - 4 SP - 1688 EP - 1709 PB - Springer CY - Dordrecht ER - TY - GEN A1 - Benson, Lawrence A1 - Makait, Hendrik A1 - Rabl, Tilmann T1 - Viper BT - An Efficient Hybrid PMem-DRAM Key-Value Store T2 - Zweitveröffentlichungen der Universität Potsdam : Reihe der Digital Engineering Fakultät N2 - Key-value stores (KVSs) have found wide application in modern software systems. For persistence, their data resides in slow secondary storage, which requires KVSs to employ various techniques to increase their read and write performance from and to the underlying medium. Emerging persistent memory (PMem) technologies offer data persistence at close-to-DRAM speed, making them a promising alternative to classical disk-based storage. However, simply drop-in replacing existing storage with PMem does not yield good results, as block-based access behaves differently in PMem than on disk and ignores PMem's byte addressability, layout, and unique performance characteristics. In this paper, we propose three PMem-specific access patterns and implement them in a hybrid PMem-DRAM KVS called Viper. We employ a DRAM-based hash index and a PMem-aware storage layout to utilize the random-write speed of DRAM and efficient sequential-write performance PMem. Our evaluation shows that Viper significantly outperforms existing KVSs for core KVS operations while providing full data persistence. Moreover, Viper outperforms existing PMem-only, hybrid, and disk-based KVSs by 4-18x for write workloads, while matching or surpassing their get performance. T3 - Zweitveröffentlichungen der Universität Potsdam : Reihe der Digital Engineering Fakultät - 20 KW - memory Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-559664 SN - 2150-8097 IS - 9 ER - TY - GEN A1 - Kruse, Sebastian A1 - Kaoudi, Zoi A1 - Contreras-Rojas, Bertty A1 - Chawla, Sanjay A1 - Naumann, Felix A1 - Quiané-Ruiz, Jorge-Arnulfo T1 - RHEEMix in the data jungle BT - a cost-based optimizer for cross-platform systems T2 - Zweitveröffentlichungen der Universität Potsdam : Reihe der Digital Engineering Fakultät N2 - Data analytics are moving beyond the limits of a single platform. In this paper, we present the cost-based optimizer of Rheem, an open-source cross-platform system that copes with these new requirements. The optimizer allocates the subtasks of data analytic tasks to the most suitable platforms. Our main contributions are: (i) a mechanism based on graph transformations to explore alternative execution strategies; (ii) a novel graph-based approach to determine efficient data movement plans among subtasks and platforms; and (iii) an efficient plan enumeration algorithm, based on a novel enumeration algebra. We extensively evaluate our optimizer under diverse real tasks. We show that our optimizer can perform tasks more than one order of magnitude faster when using multiple platforms than when using a single platform. T3 - Zweitveröffentlichungen der Universität Potsdam : Reihe der Digital Engineering Fakultät - 22 KW - cross-platform KW - polystore KW - query optimization KW - data processing Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-519443 IS - 6 ER - TY - THES A1 - Limberger, Daniel T1 - Concepts and techniques for 3D-embedded treemaps and their application to software visualization T1 - Konzepte und Techniken für 3D-eingebettete Treemaps und ihre Anwendung auf Softwarevisualisierung N2 - This thesis addresses concepts and techniques for interactive visualization of hierarchical data using treemaps. It explores (1) how treemaps can be embedded in 3D space to improve their information content and expressiveness, (2) how the readability of treemaps can be improved using level-of-detail and degree-of-interest techniques, and (3) how to design and implement a software framework for the real-time web-based rendering of treemaps embedded in 3D. With a particular emphasis on their application, use cases from software analytics are taken to test and evaluate the presented concepts and techniques. Concerning the first challenge, this thesis shows that a 3D attribute space offers enhanced possibilities for the visual mapping of data compared to classical 2D treemaps. In particular, embedding in 3D allows for improved implementation of visual variables (e.g., by sketchiness and color weaving), provision of new visual variables (e.g., by physically based materials and in situ templates), and integration of visual metaphors (e.g., by reference surfaces and renderings of natural phenomena) into the three-dimensional representation of treemaps. For the second challenge—the readability of an information visualization—the work shows that the generally higher visual clutter and increased cognitive load typically associated with three-dimensional information representations can be kept low in treemap-based representations of both small and large hierarchical datasets. By introducing an adaptive level-of-detail technique, we cannot only declutter the visualization results, thereby reducing cognitive load and mitigating occlusion problems, but also summarize and highlight relevant data. Furthermore, this approach facilitates automatic labeling, supports the emphasis on data outliers, and allows visual variables to be adjusted via degree-of-interest measures. The third challenge is addressed by developing a real-time rendering framework with WebGL and accumulative multi-frame rendering. The framework removes hardware constraints and graphics API requirements, reduces interaction response times, and simplifies high-quality rendering. At the same time, the implementation effort for a web-based deployment of treemaps is kept reasonable. The presented visualization concepts and techniques are applied and evaluated for use cases in software analysis. In this domain, data about software systems, especially about the state and evolution of the source code, does not have a descriptive appearance or natural geometric mapping, making information visualization a key technology here. In particular, software source code can be visualized with treemap-based approaches because of its inherently hierarchical structure. With treemaps embedded in 3D, we can create interactive software maps that visually map, software metrics, software developer activities, or information about the evolution of software systems alongside their hierarchical module structure. Discussions on remaining challenges and opportunities for future research for 3D-embedded treemaps and their applications conclude the thesis. N2 - Diese Doktorarbeit behandelt Konzepte und Techniken zur interaktiven Visualisierung hierarchischer Daten mit Hilfe von Treemaps. Sie untersucht (1), wie Treemaps im 3D-Raum eingebettet werden können, um ihre Informationsinhalte und Ausdrucksfähigkeit zu verbessern, (2) wie die Lesbarkeit von Treemaps durch Techniken wie Level-of-Detail und Degree-of-Interest verbessert werden kann, und (3) wie man ein Software-Framework für das Echtzeit-Rendering von Treemaps im 3D-Raum entwirft und implementiert. Dabei werden Anwendungsfälle aus der Software-Analyse besonders betont und zur Verprobung und Bewertung der Konzepte und Techniken verwendet. Hinsichtlich der ersten Herausforderung zeigt diese Arbeit, dass ein 3D-Attributraum im Vergleich zu klassischen 2D-Treemaps verbesserte Möglichkeiten für die visuelle Kartierung von Daten bietet. Insbesondere ermöglicht die Einbettung in 3D eine verbesserte Umsetzung von visuellen Variablen (z.B. durch Skizzenhaftigkeit und Farbverwebungen), die Bereitstellung neuer visueller Variablen (z.B. durch physikalisch basierte Materialien und In-situ-Vorlagen) und die Integration visueller Metaphern (z.B. durch Referenzflächen und Darstellungen natürlicher Phänomene) in die dreidimensionale Darstellung von Treemaps. Für die zweite Herausforderung – die Lesbarkeit von Informationsvisualisierungen – zeigt die Arbeit, dass die allgemein höhere visuelle Unübersichtlichkeit und die damit einhergehende, erhöhte kognitive Belastung, die typischerweise mit dreidimensionalen Informationsdarstellungen verbunden sind, in Treemap-basierten Darstellungen sowohl kleiner als auch großer hierarchischer Datensätze niedrig gehalten werden können. Durch die Einführung eines adaptiven Level-of-Detail-Verfahrens lassen sich nicht nur die Visualisierungsergebnisse übersichtlicher gestalten, die kognitive Belastung reduzieren und Verdeckungsprobleme verringern, sondern auch relevante Daten zusammenfassen und hervorheben. Darüber hinaus erleichtert dieser Ansatz eine automatische Beschriftung, unterstützt die Hervorhebung von Daten-Ausreißern und ermöglicht die Anpassung von visuellen Variablen über Degree-of-Interest-Maße. Die dritte Herausforderung wird durch die Entwicklung eines Echtzeit-Rendering-Frameworks mit WebGL und akkumulativem Multi-Frame-Rendering angegangen. Das Framework hebt mehrere Hardwarebeschränkungen und Anforderungen an die Grafik-API auf, verkürzt die Reaktionszeiten auf Interaktionen und vereinfacht qualitativ hochwertiges Rendering. Gleichzeitig wird der Implementierungsaufwand für einen webbasierten Einsatz von Treemaps geringgehalten. Die vorgestellten Visualisierungskonzepte und -techniken werden für Anwendungsfälle in der Softwareanalyse eingesetzt und evaluiert. In diesem Bereich haben Daten über Softwaresysteme, insbesondere über den Zustand und die Evolution des Quellcodes, keine anschauliche Erscheinung oder natürliche geometrische Zuordnung, so dass die Informationsvisualisierung hier eine Schlüsseltechnologie darstellt. Insbesondere Softwarequellcode kann aufgrund seiner inhärenten hierarchischen Struktur mit Hilfe von Treemap-basierten Ansätzen visualisiert werden. Mit in 3D-eingebetteten Treemaps können wir interaktive Softwarelagekarten erstellen, die z.B. Softwaremetriken, Aktivitäten von Softwareentwickler*innen und Informationen über die Evolution von Softwaresystemen in ihrer hierarchischen Modulstruktur abbilden und veranschaulichen. Diskussionen über verbleibende Herausforderungen und Möglichkeiten für zukünftige Forschung zu 3D-eingebetteten Treemaps und deren Anwendungen schließen die Arbeit ab. KW - treemaps KW - software visualization KW - software analytics KW - web-based rendering KW - degree-of-interest techniques KW - labeling KW - 3D-embedding KW - interactive visualization KW - progressive rendering KW - hierarchical data KW - 3D-Einbettung KW - Interessengrad-Techniken KW - hierarchische Daten KW - interaktive Visualisierung KW - Beschriftung KW - progressives Rendering KW - Softwareanalytik KW - Softwarevisualisierung KW - Treemaps KW - Web-basiertes Rendering Y1 - 2024 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-632014 ER - TY - CHAP A1 - Corazza, Giovanni Emanuele A1 - Thienen, Julia von ED - Glăveanu, Vlad Petre T1 - Invention T2 - The Palgrave encyclopedia of the possible N2 - This entry addresses invention from five different perspectives: (i) definition of the term, (ii) mechanisms underlying invention processes, (iii) (pre-)history of human inventions, (iv) intellectual property protection vs open innovation, and (v) case studies of great inventors. Regarding the definition, an invention is the outcome of a creative process taking place within a technological milieu, which is recognized as successful in terms of its effectiveness as an original technology. In the process of invention, a technological possibility becomes realized. Inventions are distinct from either discovery or innovation. In human creative processes, seven mechanisms of invention can be observed, yielding characteristic outcomes: (1) basic inventions, (2) invention branches, (3) invention combinations, (4) invention toolkits, (5) invention exaptations, (6) invention values, and (7) game-changing inventions. The development of humanity has been strongly shaped by inventions ever since early stone tools and the conception of agriculture. An “explosion of creativity” has been associated with Homo sapiens, and inventions in all fields of human endeavor have followed suit, engendering an exponential growth of cumulative culture. This culture development emerges essentially through a reuse of previous inventions, their revision, amendment and rededication. In sociocultural terms, humans have increasingly regulated processes of invention and invention-reuse through concepts such as intellectual property, patents, open innovation and licensing methods. Finally, three case studies of great inventors are considered: Edison, Marconi, and Montessori, next to a discussion of human invention processes as collaborative endeavors. KW - invention KW - creativity KW - invention mechanism KW - cumulative culture KW - technology KW - innovation KW - patent KW - open innovation Y1 - 2023 SN - 978-3-030-90912-3 SN - 978-3-030-90913-0 U6 - https://doi.org/10.1007/978-3-030-90913-0_14 SP - 806 EP - 814 PB - Springer International Publishing CY - Cham ER - TY - JOUR A1 - Hiort, Pauline A1 - Schlaffner, Christoph N. A1 - Steen, Judith A. A1 - Renard, Bernhard Y. A1 - Steen, Hanno T1 - multiFLEX-LF: a computational approach to quantify the modification stoichiometries in label-free proteomics data sets JF - Journal of proteome research N2 - In liquid-chromatography-tandem-mass-spectrometry-based proteomics, information about the presence and stoichiometry ofprotein modifications is not readily available. To overcome this problem,we developed multiFLEX-LF, a computational tool that builds uponFLEXIQuant, which detects modified peptide precursors and quantifiestheir modification extent by monitoring the differences between observedand expected intensities of the unmodified precursors. multiFLEX-LFrelies on robust linear regression to calculate the modification extent of agiven precursor relative to a within-study reference. multiFLEX-LF cananalyze entire label-free discovery proteomics data sets in a precursor-centric manner without preselecting a protein of interest. To analyzemodification dynamics and coregulated modifications, we hierarchicallyclustered the precursors of all proteins based on their computed relativemodification scores. We applied multiFLEX-LF to a data-independent-acquisition-based data set acquired using the anaphase-promoting complex/cyclosome (APC/C) isolated at various time pointsduring mitosis. The clustering of the precursors allows for identifying varying modification dynamics and ordering the modificationevents. Overall, multiFLEX-LF enables the fast identification of potentially differentially modified peptide precursors and thequantification of their differential modification extent in large data sets using a personal computer. Additionally, multiFLEX-LF candrive the large-scale investigation of the modification dynamics of peptide precursors in time-series and case-control studies.multiFLEX-LF is available athttps://gitlab.com/SteenOmicsLab/multiflex-lf. KW - bioinformatics tool KW - label-free quantification KW - LC-MS KW - MS KW - post-translational modification KW - modification stoichiometry KW - PTM KW - quantification Y1 - 2022 U6 - https://doi.org/10.1021/acs.jproteome.1c00669 SN - 1535-3893 SN - 1535-3907 VL - 21 IS - 4 SP - 899 EP - 909 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Wittig, Alice A1 - Miranda, Fabio Malcher A1 - Hölzer, Martin A1 - Altenburg, Tom A1 - Bartoszewicz, Jakub Maciej A1 - Beyvers, Sebastian A1 - Dieckmann, Marius Alfred A1 - Genske, Ulrich A1 - Giese, Sven Hans-Joachim A1 - Nowicka, Melania A1 - Richard, Hugues A1 - Schiebenhoefer, Henning A1 - Schmachtenberg, Anna-Juliane A1 - Sieben, Paul A1 - Tang, Ming A1 - Tembrockhaus, Julius A1 - Renard, Bernhard Y. A1 - Fuchs, Stephan T1 - CovRadar BT - continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance JF - Bioinformatics N2 - The ongoing pandemic caused by SARS-CoV-2 emphasizes the importance of genomic surveillance to understand the evolution of the virus, to monitor the viral population, and plan epidemiological responses. Detailed analysis, easy visualization and intuitive filtering of the latest viral sequences are powerful for this purpose. We present CovRadar, a tool for genomic surveillance of the SARS-CoV-2 Spike protein. CovRadar consists of an analytical pipeline and a web application that enable the analysis and visualization of hundreds of thousand sequences. First, CovRadar extracts the regions of interest using local alignment, then builds a multiple sequence alignment, infers variants and consensus and finally presents the results in an interactive app, making accessing and reporting simple, flexible and fast. Y1 - 2022 U6 - https://doi.org/10.1093/bioinformatics/btac411 SN - 1367-4803 SN - 1367-4811 VL - 38 IS - 17 SP - 4223 EP - 4225 PB - Oxford Univ. Press CY - Oxford ER -