TY - GEN A1 - Sarhan, Radwan Mohamed A1 - Koopman, Wouter-Willem Adriaan A1 - Schuetz, Roman A1 - Schmid, Thomas A1 - Liebig, Ferenc A1 - Koetz, Joachim A1 - Bargheer, Matias T1 - The importance of plasmonic heating for the plasmondriven photodimerization of 4-nitrothiophenol T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Metal nanoparticles form potent nanoreactors, driven by the optical generation of energetic electrons and nanoscale heat. The relative influence of these two factors on nanoscale chemistry is strongly debated. This article discusses the temperature dependence of the dimerization of 4-nitrothiophenol (4-NTP) into 4,4′-dimercaptoazobenzene (DMAB) adsorbed on gold nanoflowers by Surface-Enhanced Raman Scattering (SERS). Raman thermometry shows a significant optical heating of the particles. The ratio of the Stokes and the anti-Stokes Raman signal moreover demonstrates that the molecular temperature during the reaction rises beyond the average crystal lattice temperature of the plasmonic particles. The product bands have an even higher temperature than reactant bands, which suggests that the reaction proceeds preferentially at thermal hot spots. In addition, kinetic measurements of the reaction during external heating of the reaction environment yield a considerable rise of the reaction rate with temperature. Despite this significant heating effects, a comparison of SERS spectra recorded after heating the sample by an external heater to spectra recorded after prolonged illumination shows that the reaction is strictly photo-driven. While in both cases the temperature increase is comparable, the dimerization occurs only in the presence of light. Intensity dependent measurements at fixed temperatures confirm this finding. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 698 KW - enhanced raman-scattering KW - charge-transfer KW - metal KW - nanoparticles KW - catalysis KW - AU KW - 4-nitrobenzenethiol KW - aminothiophenol KW - photocatalysis KW - wavelength Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-427197 SN - 1866-8372 IS - 698 ER - TY - THES A1 - Vranic, Marija T1 - 3D Structure of the biomarker hepcidin-25 in its native state T1 - 3D-Struktur des Biomarkers Hepcidin-25 im eigenen nativen Zustand N2 - Hepcidin-25 (Hep-25) plays a crucial role in the control of iron homeostasis. Since the dysfunction of the hepcidin pathway leads to multiple diseases as a result of iron imbalance, hepcidin represents a potential target for the diagnosis and treatment of disorders of iron metabolism. Despite intense research in the last decade targeted at developing a selective immunoassay for iron disorder diagnosis and treatment and better understanding the ferroportin-hepcidin interaction, questions remain. The key to resolving these underlying questions is acquiring exact knowledge of the 3D structure of native Hep-25. Since it was determined that the N-terminus, which is responsible for the bioactivity of Hep-25, contains a small Cu(II)-binding site known as the ATCUN motif, it was assumed that the Hep-25-Cu(II) complex is the native, bioactive form of the hepcidin. This structure has thus far not been elucidated in detail. Owing to the lack of structural information on metal-bound Hep-25, little is known about its possible biological role in iron metabolism. Therefore, this work is focused on structurally characterizing the metal-bound Hep-25 by NMR spectroscopy and molecular dynamics simulations. For the present work, a protocol was developed to prepare and purify properly folded Hep-25 in high quantities. In order to overcome the low solubility of Hep-25 at neutral pH, we introduced the C-terminal DEDEDE solubility tag. The metal binding was investigated through a series of NMR spectroscopic experiments to identify the most affected amino acids that mediate metal coordination. Based on the obtained NMR data, a structural calculation was performed in order to generate a model structure of the Hep-25-Ni(II) complex. The DEDEDE tag was excluded from the structural calculation due to a lack of NMR restraints. The dynamic nature and fast exchange of some of the amide protons with solvent reduced the overall number of NMR restraints needed for a high-quality structure. The NMR data revealed that the 20 Cterminal Hep-25 amino acids experienced no significant conformational changes, compared to published results, as a result of a pH change from pH 3 to pH 7 and metal binding. A 3D model of the Hep-25-Ni(II) complex was constructed from NMR data recorded for the hexapeptideNi(II) complex and Hep-25-DEDEDE-Ni(II) complex in combination with the fixed conformation of 19 C-terminal amino acids. The NMR data of the Hep-25-DEDEDE-Ni(II) complex indicates that the ATCUN motif moves independently from the rest of the structure. The 3D model structure of the metal-bound Hep-25 allows for future works to elucidate hepcidin’s interaction with its receptor ferroportin and should serve as a starting point for the development of antibodies with improved selectivity. N2 - Hepcidin-25 (Hep-25) spielt eine entscheidende Rolle bei der Kontrolle der Eisenhomöostase. Da die Dysfunktion des Hepcidin-Signalweges aufgrund des Eisenungleichgewichts zu mehreren Krankheiten führt, stellt Hepcidin ein potenzielles Ziel für die Diagnose und Behandlung von Störungen des Eisenstoffwechsels dar. Trotz intensiver Forschung in den letzten zehn Jahren, die darauf abzielte, einen selektiven Immunoassay für die Diagnose und Behandlung von Eisenerkrankungen zu entwickeln und die Ferroportin-Hepcidin-Interaktion besser zu verstehen, bleiben Fragen offen. Der Schlüssel zur Lösung dieser grundlegenden Fragen liegt darin, genaue Kenntnisse über die 3D-Struktur des nativen Hep-25 zu erlangen. Da festgestellt wurde, dass der N-Terminus, der für die Bioaktivität von Hep-25 verantwortlich ist, eine kleine Cu(II)-Bindungsstelle enthält, die als ATCUN-Motiv bekannt ist, wurde angenommen, dass der Hep-25- Cu(II)-Komplex die native, bioaktive Form des Hepcidins ist. Diese Struktur ist bisher noch nicht im Detail untersucht worden. Aufgrund fehlender Strukturinformationen über metallgebundenes Hep-25 ist wenig über seine mögliche biologische Rolle im Eisenstoffwechsel bekannt. Daher konzentriert sich diese Arbeit auf die strukturelle Charakterisierung des metallgebundenen Hep-25 mittels NMR-Spektroskopie und Molekulardynamik Simulationen. In der vorliegenden Arbeit wurde ein Protokoll zur Präparation und Reinigung von korrekt gefaltetem Hep-25 in hohen Mengen entwickelt. Um das Problem der geringen Löslichkeit von Hep-25 bei neutralem pH-Wert zu überwinden, haben wir einen C-terminalen DEDEDEDE Löslichkeits-Tag eingeführt. Die Metallbindung wurde durch eine Reihe von NMRspektroskopischen Experimenten untersucht, um die Aminosäuren zu identifizieren, welche an der Metallkoordination beteiligt sind. Basierend auf den erhaltenen NMR-Daten wurde eine Strukturberechnung durchgeführt, um eine Modellstruktur des Hep-25-Ni(II)-Komplexes zu erzeugen. Der DEDEDE-Tag wurde aufgrund fehlender NMR- restraints von der Strukturberechnung ausgeschlossen. Die dynamische Natur und der schnelle Austausch eines Teils der Amid-Protonen mit dem Lösungsmittel reduzierten die Gesamtzahl der NMR- restraints, die für eine hochwertige Struktur erforderlich waren. Die NMR-Daten zeigten, dass die 20 C-terminalen Hep-25-Aminosäuren keine signifikanten Konformationsänderungen als Folge eines pH-Wechsels von pH 3 auf pH 7 und einer Metallbindung erfuhren. Ein 3D-Modell des Hep-25-Ni(II)-Komplexes wurde aus den NMR-Daten des Hexapeptid-Ni(II)-Komplexes und des Hep-25-DEDEDE-Ni(II)-Komplexes in Kombination mit der bekannten Konformation der 19 C-terminalen Aminosäuren erstellt. Die NMR-Daten des Hep-25-DEDEDE-Ni(II)Komplexes zeigen, dass sich das Ni-ATCUN-Motiv unabhängig vom C-Terminus bewegt. Die 3D-Modellstruktur des metallgebundenen Hep-25 ermöglicht es, in Zukunft die Interaktion von Hepcidin mit seinem Rezeptor Ferroportin zu untersuchen und soll als Ausgangspunkt für die Entwicklung von Antikörpern mit verbesserter Selektivität dienen. KW - iron KW - hepcidin KW - peptide KW - metal KW - binding KW - NMR KW - Eisen KW - Hepcidin KW - Peptid KW - Metall KW - Bindung KW - NMR Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-459295 ER - TY - JOUR A1 - Sarhan, Radwan Mohamed A1 - Koopman, Wouter-Willem Adriaan A1 - Schuetz, Roman A1 - Schmid, Thomas A1 - Liebig, Ferenc A1 - Koetz, Joachim A1 - Bargheer, Matias T1 - The importance of plasmonic heating for the plasmondriven photodimerization of 4-nitrothiophenol JF - Scientific Reports N2 - Metal nanoparticles form potent nanoreactors, driven by the optical generation of energetic electrons and nanoscale heat. The relative influence of these two factors on nanoscale chemistry is strongly debated. This article discusses the temperature dependence of the dimerization of 4-nitrothiophenol (4-NTP) into 4,4′-dimercaptoazobenzene (DMAB) adsorbed on gold nanoflowers by Surface-Enhanced Raman Scattering (SERS). Raman thermometry shows a significant optical heating of the particles. The ratio of the Stokes and the anti-Stokes Raman signal moreover demonstrates that the molecular temperature during the reaction rises beyond the average crystal lattice temperature of the plasmonic particles. The product bands have an even higher temperature than reactant bands, which suggests that the reaction proceeds preferentially at thermal hot spots. In addition, kinetic measurements of the reaction during external heating of the reaction environment yield a considerable rise of the reaction rate with temperature. Despite this significant heating effects, a comparison of SERS spectra recorded after heating the sample by an external heater to spectra recorded after prolonged illumination shows that the reaction is strictly photo-driven. While in both cases the temperature increase is comparable, the dimerization occurs only in the presence of light. Intensity dependent measurements at fixed temperatures confirm this finding. KW - enhanced raman-scattering KW - charge-transfer KW - metal KW - nanoparticles KW - catalysis KW - AU KW - 4-nitrobenzenethiol KW - aminothiophenol KW - photocatalysis KW - wavelength Y1 - 2019 U6 - https://doi.org/10.1038/s41598-019-38627-2 SN - 2045-2322 VL - 9 PB - Macmillan Publishers Limited CY - London ER - TY - JOUR A1 - Evsevleev, Sergei A1 - Paciornik, Sidnei A1 - Bruno, Giovanni T1 - Advanced deep learning-based 3D microstructural characterization of multiphase metal matrix composites JF - Advanced engineering materials N2 - The quantitative analysis of microstructural features is a key to understanding the micromechanical behavior of metal matrix composites (MMCs), which is a premise for their use in practice. Herein, a 3D microstructural characterization of a five-phase MMC is performed by synchrotron X-ray computed tomography (SXCT). A workflow for advanced deep learning-based segmentation of all individual phases in SXCT data is shown using a fully convolutional neural network with U-net architecture. High segmentation accuracy is achieved with a small amount of training data. This enables extracting unprecedently precise microstructural parameters (e.g., volume fractions and particle shapes) to be input, e.g., in micromechanical models. KW - computed tomography KW - convolutional neural networks KW - deep learning KW - metal KW - matrix composites KW - segmentations Y1 - 2020 U6 - https://doi.org/10.1002/adem.201901197 SN - 1438-1656 SN - 1527-2648 VL - 22 IS - 4 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Balischewski, Christian A1 - Choi, Hyung-Seok A1 - Behrens, Karsten A1 - Beqiraj, Alkit A1 - Körzdörfer, Thomas A1 - Gessner, Andre A1 - Wedel, Armin A1 - Taubert, Andreas T1 - Metal sulfide nanoparticle synthesis with ionic liquids state of the art and future perspectives JF - ChemistryOpen N2 - Metal sulfides are among the most promising materials for a wide variety of technologically relevant applications ranging from energy to environment and beyond. Incidentally, ionic liquids (ILs) have been among the top research subjects for the same applications and also for inorganic materials synthesis. As a result, the exploitation of the peculiar properties of ILs for metal sulfide synthesis could provide attractive new avenues for the generation of new, highly specific metal sulfides for numerous applications. This article therefore describes current developments in metal sulfide nano-particle synthesis as exemplified by a number of highlight examples. Moreover, the article demonstrates how ILs have been used in metal sulfide synthesis and discusses the benefits of using ILs over more traditional approaches. Finally, the article demonstrates some technological challenges and how ILs could be used to further advance the production and specific property engineering of metal sulfide nanomaterials, again based on a number of selected examples. KW - Ionic liquids KW - ionic liquid crystals KW - ionic liquid precursors KW - metal KW - sulfides KW - catalysis KW - electrochemistry KW - energy materials KW - LED KW - solar KW - cells Y1 - 2021 U6 - https://doi.org/10.1002/open.202000357 SN - 2191-1363 VL - 10 IS - 2 SP - 272 EP - 295 PB - Wiley-VCH CY - Weinheim ER -