TY - JOUR A1 - Zühlke, Martin A1 - Meiling, Till Thomas A1 - Roder, Phillip A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Bald, Ilko A1 - Löhmannsröben, Hans-Gerd A1 - Janßen, Traute A1 - Erhard, Marcel A1 - Repp, Alexander T1 - Photodynamic inactivation of E. coli bacteria via carbon nanodots JF - ACS omega / American Chemical Society N2 - The increasing development of antibiotic resistance in bacteria has been a major problem for years, both in human and veterinary medicine. Prophylactic measures, such as the use of vaccines, are of great importance in reducing the use of antibiotics in livestock. These vaccines are mainly produced based on formaldehyde inactivation. However, the latter damages the recognition elements of the bacterial proteins and thus could reduce the immune response in the animal. An alternative inactivation method developed in this work is based on gentle photodynamic inactivation using carbon nanodots (CNDs) at excitation wavelengths λex > 290 nm. The photodynamic inactivation was characterized on the nonvirulent laboratory strain Escherichia coli K12 using synthesized CNDs. For a gentle inactivation, the CNDs must be absorbed into the cytoplasm of the E. coli cell. Thus, the inactivation through photoinduced formation of reactive oxygen species only takes place inside the bacterium, which means that the outer membrane is neither damaged nor altered. The loading of the CNDs into E. coli was examined using fluorescence microscopy. Complete loading of the bacterial cells could be achieved in less than 10 min. These studies revealed a reversible uptake process allowing the recovery and reuse of the CNDs after irradiation and before the administration of the vaccine. The success of photodynamic inactivation was verified by viability assays on agar. In a homemade flow photoreactor, the fastest successful irradiation of the bacteria could be carried out in 34 s. Therefore, the photodynamic inactivation based on CNDs is very effective. The membrane integrity of the bacteria after irradiation was verified by slide agglutination and atomic force microscopy. The method developed for the laboratory strain E. coli K12 could then be successfully applied to the important avian pathogens Bordetella avium and Ornithobacterium rhinotracheale to aid the development of novel vaccines. KW - Bacteria KW - Genetics KW - Fluorescence KW - Photodynamics KW - Irradiation Y1 - 2021 U6 - https://doi.org/10.1021/acsomega.1c01700 SN - 2470-1343 VL - 6 IS - 37 SP - 23742 EP - 23749 PB - ACS Publications CY - Washington, DC ER - TY - GEN A1 - Zühlke, Martin A1 - Meiling, Till Thomas A1 - Roder, Phillip A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Bald, Ilko A1 - Löhmannsröben, Hans-Gerd A1 - Janßen, Traute A1 - Erhard, Marcel A1 - Repp, Alexander T1 - Photodynamic Inactivation of E. coli Bacteria via Carbon Nanodots T2 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - The increasing development of antibiotic resistance in bacteria has been a major problem for years, both in human and veterinary medicine. Prophylactic measures, such as the use of vaccines, are of great importance in reducing the use of antibiotics in livestock. These vaccines are mainly produced based on formaldehyde inactivation. However, the latter damages the recognition elements of the bacterial proteins and thus could reduce the immune response in the animal. An alternative inactivation method developed in this work is based on gentle photodynamic inactivation using carbon nanodots (CNDs) at excitation wavelengths λex > 290 nm. The photodynamic inactivation was characterized on the nonvirulent laboratory strain Escherichia coli K12 using synthesized CNDs. For a gentle inactivation, the CNDs must be absorbed into the cytoplasm of the E. coli cell. Thus, the inactivation through photoinduced formation of reactive oxygen species only takes place inside the bacterium, which means that the outer membrane is neither damaged nor altered. The loading of the CNDs into E. coli was examined using fluorescence microscopy. Complete loading of the bacterial cells could be achieved in less than 10 min. These studies revealed a reversible uptake process allowing the recovery and reuse of the CNDs after irradiation and before the administration of the vaccine. The success of photodynamic inactivation was verified by viability assays on agar. In a homemade flow photoreactor, the fastest successful irradiation of the bacteria could be carried out in 34 s. Therefore, the photodynamic inactivation based on CNDs is very effective. The membrane integrity of the bacteria after irradiation was verified by slide agglutination and atomic force microscopy. The method developed for the laboratory strain E. coli K12 could then be successfully applied to the important avian pathogens Bordetella avium and Ornithobacterium rhinotracheale to aid the development of novel vaccines. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1220 KW - Bacteria KW - Genetics KW - Fluorescence KW - Photodynamics KW - Irradiation Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-538425 SN - 1866-8372 SP - 23742 EP - 23749 PB - Universität Potsdam CY - Potsdam ER - TY - GEN A1 - Wolff, Christian Michael A1 - Canil, Laura A1 - Rehermann, Carolin A1 - Nguyen, Ngoc Linh A1 - Zu, Fengshuo A1 - Ralaiarisoa, Maryline A1 - Caprioglio, Pietro A1 - Fiedler, Lukas A1 - Stolterfoht, Martin A1 - Kogikoski, Junior, Sergio A1 - Bald, Ilko A1 - Koch, Norbert A1 - Unger, Eva L. A1 - Dittrich, Thomas A1 - Abate, Antonio A1 - Neher, Dieter T1 - Correction to 'Perfluorinated self-assembled monolayers enhance the stability and efficiency of inverted perovskite solar cells' (2020, 14 (2), 1445−1456) T2 - ACS nano Y1 - 2020 U6 - https://doi.org/10.1021/acsnano.0c08081 SN - 1936-0851 SN - 1936-086X VL - 14 IS - 11 SP - 16156 EP - 16156 PB - American Chemical Society CY - Washington, DC ER - TY - JOUR A1 - Vogel, Stefanie A1 - Rackwitz, Jenny A1 - Schuerman, Robin A1 - Prinz, Julia A1 - Milosavljevic, Aleksandar R. A1 - Refregiers, Matthieu A1 - Giuliani, Alexandre A1 - Bald, Ilko T1 - Using DNA origami nanostructures to determine absolute cross sections for UV photon-induced DNA strand breakage JF - The journal of physical chemistry letters N2 - We have characterized ultraviolet (UV) photon-induced DNA strand break processes by determination of absolute cross sections for photoabsorption and for sequence-specific DNA single strand breakage induced by photons in an energy range from 6.50 to 8.94 eV. These represent the lowest-energy photons able to induce DNA strand breaks. Oligonudeotide targets are immobilized on a UV transparent substrate in controlled quantities through attachment to DNA origami templates. Photon-induced dissociation of single DNA strands is visualized and quantified using atomic force microscopy. The obtained quantum yields for strand breakage vary between 0.06 and 0.5, indicating highly efficient DNA strand breakage by UV photons, which is clearly dependent on the photon energy. Above the ionization threshold strand breakage becomes clearly the dominant form of DNA radiation damage, which is then also dependent on the nucleotide sequence. Y1 - 2015 U6 - https://doi.org/10.1021/acs.jpclett.5b02238 SN - 1948-7185 VL - 6 IS - 22 SP - 4589 EP - 4593 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Vogel, Stefanie A1 - Ebel, Kenny A1 - Schürmann, Robin Mathis A1 - Heck, Christian A1 - Meiling, Till A1 - Milosavljevic, Aleksandar R. A1 - Giuliani, Alexandre A1 - Bald, Ilko T1 - Vacuum-UV and Low-Energy Electron-Induced DNA Strand Breaks BT - Influence of the DNA Sequence and Substrate JF - ChemPhysChem : a European journal of chemical physics and physical chemistry N2 - DNA is effectively damaged by radiation, which can on the one hand lead to cancer and is on the other hand directly exploited in the treatment of tumor tissue. DNA strand breaks are already induced by photons having an energy below the ionization energy of DNA. At high photon energies, most of the DNA strand breaks are induced by low-energy secondary electrons. In the present study we quantified photon and electron induced DNA strand breaks in four different 12mer oligonucleotides. They are irradiated directly with 8.44 eV vacuum ultraviolet (VUV) photons and 8.8 eV low energy electrons (LEE). By using Si instead of VUV transparent CaF2 as a substrate the VUV exposure leads to an additional release of LEEs, which have a maximum energy of 3.6 eV and can significantly enhance strand break cross sections. Atomic force microscopy is used to visualize strand breaks on DNA origami platforms and to determine absolute values for the strand break cross sections. Upon irradiation with 8.44 eV photons all the investigated sequences show very similar strand break cross sections in the range of 1.7-2.3x10(-16) cm(2). The strand break cross sections for LEE irradiation at 8.8 eV are one to two orders of magnitude larger than the ones for VUV photons, and a slight sequence dependence is observed. The sequence dependence is even more pronounced for LEEs with energies <3.6 eV. The present results help to assess DNA damage by photons and electrons close to the ionization threshold. KW - DNA origami KW - DNA radiation damage KW - DNA strand breaks KW - low-energy electrons KW - vacuum-UV radiation Y1 - 2019 U6 - https://doi.org/10.1002/cphc.201801152 SN - 1439-4235 SN - 1439-7641 VL - 20 IS - 6 SP - 823 EP - 830 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Vogel, Stefanie A1 - Ebel, Kenny A1 - Heck, Christian A1 - Schürmann, Robin Mathis A1 - Milosavljevic, Aleksandar R. A1 - Giuliani, Alexandre A1 - Bald, Ilko T1 - Vacuum-UV induced DNA strand breaks BT - influence of the radiosensitizers 5-bromouracil and 8-bromoadenine JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - Radiation therapy is a basic part of cancer treatment. To increase the DNA damage in carcinogenic cells and preserve healthy tissue at the same time, radiosensitizing molecules such as halogenated nucleobase analogs can be incorporated into the DNA during the cell reproduction cycle. In the present study 8.44 eV photon irradiation induced single strand breaks (SSB) in DNA sequences modified with the radiosensitizer 5-bromouracil (U-5Br) and 8-bromoadenine ((8Br)A) are investigated. U-5Br was incorporated in the 13mer oligonucleotide flanked by different nucleobases. It was demonstrated that the highest SSB cross sections were reached, when cytosine and thymine were adjacent to U-5Br, whereas guanine as a neighboring nucleobase decreases the activity of U-5Br indicating that competing reaction mechanisms are active. This was further investigated with respect to the distance of guanine to U-5Br separated by an increasing number of adenine nucleotides. It was observed that the SSB cross sections were decreasing with an increasing number of adenine spacers between guanine and U-5Br until the SSB cross sections almost reached the level of a non-modified DNA sequence, which demonstrates the high sequence dependence of the sensitizing effect of U-5Br. (8Br)A was incorporated in a 13mer oligonucleotide as well and the strand breaks were quantified upon 8.44 eV photon irradiation in direct comparison to a non-modified DNA sequence of the same composition. No clear enhancement of the SSB yield of the modified in comparison to the non-modified DNA sequence could be observed. Additionally, secondary electrons with a maximum energy of 3.6 eV were generated when using Si as a substrate giving rise to further DNA damage. A clear enhancement in the SSB yield can be ascertained, but to the same degree for both the non-modified DNA sequence and the DNA sequence modified with (8Br)A. Y1 - 2019 U6 - https://doi.org/10.1039/c8cp06813e SN - 1463-9076 SN - 1463-9084 VL - 21 IS - 4 SP - 1972 EP - 1979 PB - Royal Society of Chemistry CY - Cambridge ER - TY - GEN A1 - Tasior, Mariusz A1 - Bald, Ilko A1 - Deperasińska, Irena A1 - Cywiński, Piotr J. A1 - Gryko, Daniel T. T1 - An internal charge transfer-dependent solvent effect in V-shaped azacyanines N2 - New V-shaped non-centrosymmetric dyes, possessing a strongly electron-deficient azacyanine core, have been synthesized based on a straightforward two-step approach. The key step in this synthesis involves palladium-catalysed cross-coupling of dibromo-N,N′-methylene-2,2′-azapyridinocyanines with arylacetylenes. The resulting strongly polarized π-expanded heterocycles exhibit green to orange fluorescence and they strongly respond to changes in solvent polarity. We demonstrate that differently electron-donating peripheral groups have a significant influence on the internal charge transfer, hence on the solvent effect and fluorescence quantum yield. TD-DFT calculations confirm that, in contrast to the previously studied bis(styryl)azacyanines, the proximity of S1 and T2 states calculated for compounds bearing two 4-N,N-dimethylaminophenylethynyl moieties establishes good conditions for efficient intersystem crossing and is responsible for its low fluorescence quantum yield. Non-linear properties have also been determined for new azacyanines and the results show that depending on peripheral groups, the synthesized dyes exhibit small to large two-photon absorption cross sections reaching 4000 GM. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 306 Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-102704 SP - 11714 EP - 11720 ER - TY - JOUR A1 - Tasior, Mariusz A1 - Bald, Ilko A1 - Deperasinska, Irena A1 - Cywinski, Piotr J. A1 - Gryko, Daniel T. T1 - An internal charge transfer-dependent solvent effect in V-shaped azacyanines JF - Organic & biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry Y1 - 2015 U6 - https://doi.org/10.1039/c5ob01633a SN - 1477-0520 SN - 1477-0539 VL - 13 IS - 48 SP - 11714 EP - 11720 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Tapio, Kosti A1 - Bald, Ilko T1 - The potential of DNA origami to build multifunctional materials JF - Multifunctional Materials N2 - The development of the DNA origami technique has revolutionized the field of DNA nanotechnology as it allows to create virtually any arbitrarily shaped nanostructure out of DNA on a 10–100 nm length scale by a rather robust self-assembly process. Additionally, DNA origami nanostructures can be modified with chemical entities with nanometer precision, which allows to tune precisely their properties, their mutual interactions and interactions with their environment. The flexibility and modularity of DNA origami allows also for the creation of dynamic nanostructures, which opens up a plethora of possible functions and applications. Here we review the fundamental properties of DNA origami nanostructures, the wide range of functions that arise from these properties and finally present possible applications of DNA origami based multifunctional materials. Y1 - 2020 UR - https://iopscience.iop.org/article/10.1088/2399-7532/ab80d5 U6 - https://doi.org/10.1088/2399-7532/ab80d5 SN - 2399-7532 VL - 3 IS - 3 PB - IOP Publishing CY - Bristol ER - TY - JOUR A1 - Stefancu, Andrei A1 - Nan, Lin A1 - Zhu, Li A1 - Chis, Vasile A1 - Bald, Ilko A1 - Liu, Min A1 - Leopold, Nicolae A1 - Maier, Stefan A. A1 - Cortes, Emiliano T1 - Controlling plasmonic chemistry pathways through specific ion effects JF - Advanced optical materials N2 - Plasmon-driven dehalogenation of brominated purines has been recently explored as a model system to understand fundamental aspects of plasmon-assisted chemical reactions. Here, it is shown that divalent Ca2+ ions strongly bridge the adsorption of bromoadenine (Br-Ade) to Ag surfaces. Such ion-mediated binding increases the molecule's adsorption energy leading to an overlap of the metal energy states and the molecular states, enabling the chemical interface damping (CID) of the plasmon modes of the Ag nanostructures (i.e., direct electron transfer from the metal to Br-Ade). Consequently, the conversion of Br-Ade to adenine almost doubles following the addition of Ca2+. These experimental results, supported by theoretical calculations of the local density of states of the Ag/Br-Ade complex, indicate a change of the charge transfer pathway driving the dehalogenation reaction, from Landau damping (in the lack of Ca2+ ions) to CID (after the addition of Ca2+). The results show that the surface dynamics of chemical species (including water molecules) play an essential role in charge transfer at plasmonic interfaces and cannot be ignored. It is envisioned that these results will help in designing more efficient nanoreactors, harnessing the full potential of plasmon-assisted chemistry. KW - chemical interface damping KW - Hofmeister effect KW - hydration layer KW - plasmonic chemistry KW - specific ion effects KW - surface-enhanced Raman scattering Y1 - 2022 U6 - https://doi.org/10.1002/adom.202200397 SN - 2195-1071 VL - 10 IS - 14 PB - Wiley-VCH CY - Weinheim ER -