TY - JOUR A1 - Tscheuschner, Georg A1 - Kaiser, Melanie N. A1 - Lisec, Jan A1 - Beslic, Denis A1 - Muth, Thilo A1 - Krüger, Maren A1 - Mages, Hans Werner A1 - Dorner, Brigitte G. A1 - Knospe, Julia A1 - Schenk, Jörg A. A1 - Sellrie, Frank A1 - Weller, Michael G. T1 - MALDI-TOF-MS-based identification of monoclonal murine Anti-SARS-CoV-2 antibodies within one hour JF - Antibodies N2 - During the SARS-CoV-2 pandemic, many virus-binding monoclonal antibodies have been developed for clinical and diagnostic purposes. This underlines the importance of antibodies as universal bioanalytical reagents. However, little attention is given to the reproducibility crisis that scientific studies are still facing to date. In a recent study, not even half of all research antibodies mentioned in publications could be identified at all. This should spark more efforts in the search for practical solutions for the traceability of antibodies. For this purpose, we used 35 monoclonal antibodies against SARS-CoV-2 to demonstrate how sequence-independent antibody identification can be achieved by simple means applied to the protein. First, we examined the intact and light chain masses of the antibodies relative to the reference material NIST-mAb 8671. Already half of the antibodies could be identified based solely on these two parameters. In addition, we developed two complementary peptide mass fingerprinting methods with MALDI-TOF-MS that can be performed in 60 min and had a combined sequence coverage of over 80%. One method is based on the partial acidic hydrolysis of the protein by 5 mM of sulfuric acid at 99 degrees C. Furthermore, we established a fast way for a tryptic digest without an alkylation step. We were able to show that the distinction of clones is possible simply by a brief visual comparison of the mass spectra. In this work, two clones originating from the same immunization gave the same fingerprints. Later, a hybridoma sequencing confirmed the sequence identity of these sister clones. In order to automate the spectral comparison for larger libraries of antibodies, we developed the online software ABID 2.0. This open-source software determines the number of matching peptides in the fingerprint spectra. We propose that publications and other documents critically relying on monoclonal antibodies with unknown amino acid sequences should include at least one antibody fingerprint. By fingerprinting an antibody in question, its identity can be confirmed by comparison with a library spectrum at any time and context. KW - SARS-CoV-2 antibody KW - reproducibility crisis KW - peptide mass KW - fingerprinting KW - monoclonal antibody KW - traceability KW - identity KW - antibody KW - identification KW - antibody light chain KW - MALDI-TOF-MS Y1 - 2022 U6 - https://doi.org/10.3390/antib11020027 SN - 2073-4468 VL - 11 IS - 2 PB - MDPI CY - Basel ER - TY - RPRT A1 - Apelojg, Benjamin A1 - Bosse, Stefanie A1 - Geschke, Doreen A1 - Hausner, Christian A1 - Jennek, Julia A1 - Liebner, Saskia A1 - Lipka, Marlies A1 - Marx, Alexandra A1 - Plötner, Kathleen A1 - Reimann, Christina A1 - Sievert, Florian A1 - Spörer, Nadine A1 - Teke, Gülay A1 - Völkner, Katrin A1 - Wabnitz, Juliane A1 - Waschke, Lene A1 - Zielke, Sonja A1 - Zrenner, Laura ED - Spörer, Nadine ED - Völkner, Katrin T1 - Rahmenkonzept der Universitätsschule Potsdam N2 - Das Rahmenkonzept der Universitätsschule Potsdam beschreibt die Wertegrundlage und das pädagogisch-didaktische sowie das wissenschaftliche Fundament einer zu gründenden Universitätsschule Potsdam. Wie andere Universitätsschulen soll sich auch diese Schule durch eine enge und institutionalisierte Beziehung zwischen Schule und Universität auszeichnen, die den ständigen Wissenstransfer zwischen Schulpraxis, Wissenschaft, Lehrkräftebildung und Schulverwaltung unterstützt. Das Rahmenkonzept legt die Grundlagen für eine inklusive Schule, deren Schüler:innen einen Querschnitt der Gesellschaft abbilden, und die in ungleichheitssensiblen Bildungsangeboten alle Bildungsabschlüsse des Landes Brandenburg anbietet. Die Universitätsschule soll den starken Segregationsprozessen in Potsdam entgegenwirken. Im Leitbild werden die Grundwerte (Nachhaltigkeit, Inklusion und Bildungsgerechtigkeit, Menschenrechte und Demokratie, Gemeinschaft, Ganzheitlichkeit) und die Bildungsziele (Transferfähigkeit, kritisch-reflexives Denken und lebensbegleitendes Lernen, Diversitätsbewusstsein und Transkulturalität, Selbstkompetenz und Beziehungskompetenz, Kulturtechniken und digitale Kompetenz) der Universitätsschule dargestellt. Das Pädagogische Konzept veranschaulicht, wie Werte und Bildungsziele in den Bereichen Schulform, Schulkultur, Lernkultur sowie Lernorte und Lernumgebung ausgestaltet werden können. Schließlich wird die Universitätsschule als lernende und lehrende Institution beschrieben, die ein Ort des Transfers von Bildungsinnovationen ist. Dafür soll eine Transferwerkstatt in der Schule verankert werden, die den Wissensaustausch der schulrelevanten Akteur:innen unterstützt und gestaltet. KW - Universitätsschule KW - Bildungsgerechtigkeit KW - Forschung-Praxis-Kooperation KW - Wissenstransfer KW - Lehrkräftebildung Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-491380 ER - TY - JOUR A1 - Fandinno, Jorge A1 - Laferriere, Francois A1 - Romero, Javier A1 - Schaub, Torsten H. A1 - Son, Tran Cao T1 - Planning with incomplete information in quantified answer set programming JF - Theory and practice of logic programming N2 - We present a general approach to planning with incomplete information in Answer Set Programming (ASP). More precisely, we consider the problems of conformant and conditional planning with sensing actions and assumptions. We represent planning problems using a simple formalism where logic programs describe the transition function between states, the initial states and the goal states. For solving planning problems, we use Quantified Answer Set Programming (QASP), an extension of ASP with existential and universal quantifiers over atoms that is analogous to Quantified Boolean Formulas (QBFs). We define the language of quantified logic programs and use it to represent the solutions different variants of conformant and conditional planning. On the practical side, we present a translation-based QASP solver that converts quantified logic programs into QBFs and then executes a QBF solver, and we evaluate experimentally the approach on conformant and conditional planning benchmarks. KW - answer set programming KW - planning KW - quantified logics Y1 - 2021 U6 - https://doi.org/10.1017/S1471068421000259 SN - 1471-0684 SN - 1475-3081 VL - 21 IS - 5 SP - 663 EP - 679 PB - Cambridge University Press CY - Cambridge ER - TY - JOUR A1 - Zurnic, Irena A1 - Hütter, Sylvia A1 - Rzeha, Ute A1 - Stanke, Nicole A1 - Reh, Juliane A1 - Müllers, Erik A1 - Hamann, Martin V. A1 - Kern, Tobias A1 - Gerresheim, Gesche K. A1 - Lindel, Fabian A1 - Serrao, Erik A1 - Lesbats, Paul A1 - Engelman, Alan N. A1 - Cherepanov, Peter A1 - Lindemann, Dirk T1 - Interactions of Prototype Foamy Virus Capsids with Host Cell Polo-Like Kinases Are Important for Efficient Viral DNA Integration JF - PLoS Pathogens N2 - Unlike for other retroviruses, only a few host cell factors that aid the replication of foamy viruses (FVs) via interaction with viral structural components are known. Using a yeast-two-hybrid (Y2H) screen with prototype FV (PFV) Gag protein as bait we identified human polo-like kinase 2 (hPLK2), a member of cell cycle regulatory kinases, as a new interactor of PFV capsids. Further Y2H studies confirmed interaction of PFV Gag with several PLKs of both human and rat origin. A consensus Ser-Thr/Ser-Pro (S-T/S-P) motif in Gag, which is conserved among primate FVs and phosphorylated in PFV virions, was essential for recognition by PLKs. In the case of rat PLK2, functional kinase and polo-box domains were required for interaction with PFV Gag. Fluorescently-tagged PFV Gag, through its chromatin tethering function, selectively relocalized ectopically expressed eGFP-tagged PLK proteins to mitotic chromosomes in a Gag STP motif-dependent manner, confirming a specific and dominant nature of the Gag-PLK interaction in mammalian cells. The functional relevance of the Gag-PLK interaction was examined in the context of replication-competent FVs and single-round PFV vectors. Although STP motif mutated viruses displayed wild type (wt) particle release, RNA packaging and intra-particle reverse transcription, their replication capacity was decreased 3-fold in single-cycle infections, and up to 20-fold in spreading infections over an extended time period. Strikingly similar defects were observed when cells infected with single-round wt Gag PFV vectors were treated with a pan PLK inhibitor. Analysis of entry kinetics of the mutant viruses indicated a post-fusion defect resulting in delayed and reduced integration, which was accompanied with an enhanced preference to integrate into heterochromatin. We conclude that interaction between PFV Gag and cellular PLK proteins is important for early replication steps of PFV within host cells. Y1 - 2016 U6 - https://doi.org/10.1371/journal.ppat.1005860 SN - 1553-7366 SN - 1553-7374 VL - 12 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Lontsi, Agostiny Marrios A1 - Ohrnberger, Matthias A1 - Krüger, Frank A1 - Sánchez-Sesma, Francisco José T1 - Combining surface-wave phase-velocity dispersion curves and full microtremor horizontal-to-vertical spectral ratio for subsurface sedimentary site characterization JF - Interpretation : a journal of subsurface characterization N2 - We compute seismic velocity profiles by a combined inversion of surface-wave phase-velocity dispersion curves together with the full spectrum of the microtremor horizontal-to-vertical (H/V) spectral ratio at two sediment-covered sites in Germany. The sediment deposits are approximately 100 m thick at the first test site and approximately 400 m thick at the second test site. We have used an extended physical model based on the diffuse wavefield assumption for the interpretation of the observed microtremor H/V spectral ratio. The extension includes the interpretation of the microtremor H/V spectral ratio observed at depth (in boreholes). This full-wavefield approach accounts for the energy contribution from the body and surface waves, and thus it allows for inverting the properties of the shallow subsurface. We have obtained the multimode phase velocity dispersion curves from an independent study, and a description of the extracted branches and their interpretation was developed. The inversion results indicate that the combined approach using seismic ambient noise and actively generated surface-wave data will improve the accuracy of the reconstructed near-surface velocity model, a key step in microzonation, geotechnical engineering, seismic statics corrections, and reservoir imaging. Y1 - 2016 U6 - https://doi.org/10.1190/INT-2016-0021.1 SN - 2324-8858 SN - 2324-8866 VL - 4 SP - SQ41 EP - SQ49 PB - Society of Exploration Geophysicists CY - Tulsa ER - TY - JOUR A1 - Armata, Federico A1 - Vasile, Ruggero A1 - Barcellona, Pablo A1 - Buhmann, Stefan Yoshi A1 - Rizzuto, Lucia A1 - Passante, Roberto T1 - Dynamical Casimir-Polder force between an excited atom and a conducting wall JF - Physical review : A, Atomic, molecular, and optical physics N2 - We consider the dynamical atom-surface Casimir-Polder force in the nonequilibrium configuration of an atom near a perfectly conducting wall, initially prepared in an excited state with the field in its vacuum state. We evaluate the time-dependent Casimir-Polder force on the atom and find that it shows an oscillatory behavior from attractive to repulsive both in time and in space. We also investigate the asymptotic behavior in time of the dynamical force and of related local field quantities, showing that the static value of the force, as obtained by a time-independent approach, is recovered for times much longer than the time scale of the atomic self-dressing but shorter than the atomic decay time. We then discuss the evolution of global quantities such as atomic and field energies and their asymptotic behavior. We also compare our results for the dynamical force on the excited atom with analogous results recently obtained for an initially bare ground-state atom. We show that new relevant features are obtained in the case of an initially excited atom, for example, much larger values of the dynamical force with respect to the static one, allowing for an easier way to single out and observe the dynamical Casimir-Polder effect. Y1 - 2016 U6 - https://doi.org/10.1103/PhysRevA.94.042511 SN - 2469-9926 SN - 2469-9934 VL - 94 SP - 104 EP - 114 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Kamprath, Martin A1 - Mietzner, Dana T1 - The impact of sectoral changes on individual competences: A reflective scenario-based approach in the creative industries JF - Technological forecasting & social change N2 - Many foresight studies concentrate on technological foresight and its impact at the organizational level. However, often these studies overlook the soft factor of employee competences which is critical to adopting technological and organizational changes and to developing the necessary innovation capabilities. This study investigates the theoretical and methodological underdeveloped relationship between technological innovation and social initiated change and the impact on individual competences in a dynamic sector. The setting of our study is the turbulent creative industries as a whole, where creative and artistic expression merges with changing technological progress. In a scenario study we mainly conducted in 2010, we developed a scenario model for competences to combine individual competences with a scenario approach to investigate how competences are important to the sector shift or need to be enhanced in the future. We use primary qualitative data from expert interviews and workshops and secondary data from industry reports to identify thirty-seven influence factors. An influence matrix calculation and a cluster analysis are used to project three different scenarios presenting how future developments of the creative industries will influence the competences needed for creative occupations. Now, five years later, we reflect the accuracy of the developed scenarios via a comparison of today's situation with the situation in the scenarios. We discuss theoretical contributions for the foresight literature and practical implementations for the future of work in general, and in particular for the creative industries case. (C) 2015 Elsevier Inc. All rights reserved. KW - Creative industries KW - Creative economy KW - Digital KW - Convergence KW - Media KW - Entertainment KW - Scenario KW - Foresight KW - Futures studies KW - Technological impact KW - Competences KW - Skills KW - Work KW - Microfoundations KW - Human capital resource KW - Strategic human resources Y1 - 2015 U6 - https://doi.org/10.1016/j.techfore.2015.01.011 SN - 0040-1625 SN - 1873-5509 VL - 95 SP - 252 EP - 275 PB - Elsevier CY - New York ER - TY - JOUR A1 - Stefanakis, Nikolaos A1 - Abel, Markus A1 - Bergner, Andre T1 - Sound Synthesis Based on Ordinary Differential Equations JF - Computer music journal N2 - Ordinary differential equations (ODEs) have been studied for centuries as a means to model complex dynamical processes from the real world. Nevertheless, their application to sound synthesis has not yet been fully exploited. In this article we present a systematic approach to sound synthesis based on first-order complex and real ODEs. Using simple time-dependent and nonlinear terms, we illustrate the mapping between ODE coefficients and physically meaningful control parameters such as pitch, pitch bend, decay rate, and attack time. We reveal the connection between nonlinear coupling terms and frequency modulation, and we discuss the implications of this scheme in connection with nonlinear synthesis. The ability to excite a first-order complex ODE with an external input signal is also examined; stochastic or impulsive signals that are physically or synthetically produced can be presented as input to the system, offering additional synthesis possibilities, such as those found in excitation/filter synthesis and filter-based modal synthesis. Y1 - 2015 U6 - https://doi.org/10.1162/COMJ_a_00314 SN - 0148-9267 SN - 1531-5169 VL - 39 IS - 3 SP - 46 EP - 58 PB - MIT Press CY - Cambridge ER - TY - THES A1 - Reisswig, Katja T1 - Die „unternehmerische Mission“ von Universitäten : eine neoinstitutionalistische Betrachtung des Aufgabenbereichs Wissens- und Technologietransfer (WTT) an deutschen Hochschulen T1 - The "entrepreneurial mission" of universities : a neoinstitutional view regarding the task of knowledge and technology transfer at universities N2 - Die Arbeit thematisiert die Veränderungen im deutschen Wissenschafts- und Hochschulsystem. Im Mittelpunkt steht die "unternehmerische Mission" von Universitäten. Der Blick wird auf das Aufgabenfeld Wissens- und Technologietransfer (WTT) gerichtet. Anhand dessen werden die Veränderungen, die innerhalb des deutschen Universitätssystems in den vergangenen Jahren erfolgten, nachgezeichnet. Die Erwartungshaltungen an Universitäten haben sich verändert. Ökonomische Sichtweisen nehmen einen immer größeren Stellenwert ein. Die Arbeit baut auf den Prämissen der neoinstitutionalistischen Organisationstheorie auf. Anhand dieser wird gezeigt, wie Erwartungen externer Stakeholder Eingang in Hochschulen finden und sich auf ihre organisatorische Ausgestaltung auswirken. Der Arbeit liegt ein exploratives, qualitatives Untersuchungsdesign zugrunde. In einer Fallstudie werden zwei Universitäten als Fallbeispiele untersucht. Die Untersuchung liefert Antworten auf die Fragen, wie der WTT als Aufgabenbereich an deutschen Universitäten umgesetzt wird, welche Strukturen sich herausgebildet haben und inwieweit eine Institutionalisierung des WTTs an Universitäten erfolgt ist. In der Arbeit werden verschiedene Erhebungsinstrumente im Rahmen einer Triangulation genutzt. Experteninterviews bilden das Hauptanalyseinstrument. Ziel der Untersuchung ist neben der Beantwortung der Forschungsfragen, Hypothesen zu bilden, die für weiterführende Untersuchungen genutzt werden können. Darüber hinaus werden Handlungsempfehlungen für die Umsetzung des WTTs an deutschen Hochschulen gegeben. Die Arbeit richtet sich sowohl an Wissenschaftler als auch Praktiker aus dem Bereich Wissens- und Technologietransfer. N2 - German universities are confronted with ongoing changes. One of these changes encompasses a paradigm shift, which affects the university and research system as a whole. This paradigm shift is the so called "third mission" - or "entrepreneurial mission" - of universities. Universities are asked to make contributions to the economic system via transfer of knowledge and technology. Economic perspectives have an increasing influence on universities and the research system. For this reason, the expectations of external stakeholers are growing. The dissertation shows how these expectations affect the organizational shape of universities. By using neoinstitutional organizational theory, this work finds answers to the following questions: How do universities integrate the "entrepreneurial mission" in their organizational structures? Which organizational structures have emerged? How far has an institutional process been taken place? An explorative, qualitative research design is used and a case study is performed, which includes two universities as examples. Two dimensions were investigated: The structures of universities in the field of technology and knowledge transfer, and the central actors of universities. The main research instrument consists of interviews with experts in the field. Apart from answering the questions posed above, the central aim of the survey is to get a deeper understanding of how German Universities fulfill their “entrepreneurial mission”. Several hypotheses are generated that can be used for further investigations. Furthermore, some practical input is provided for implementing knowledge and technology transfer at German universities. The target audience of this thesis are researchers and practitioners in the field of knowledge and technology transfer. KW - Unternehmerische Universitäten KW - Wissens- und Technologietransfer KW - unternehmerische Mission KW - neoinstitutionale Organisationstheorie KW - entrepreneurial university KW - knowledge- and technology transfer KW - entrepreneurial mission KW - neoinstitutional organizational theory Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-70574 ER - TY - BOOK A1 - Adelhelm, Silvia A1 - Braun, Andreas A1 - Müller, Elisabeth A1 - Vladova, Gergana T1 - Philo : PharmaInnovationsLotse ; ihr Weg zum erfolgreichen Open Innovation Management N2 - Vorliegender Leitfaden ist eines der Ergebnisse des Forschungsprojekts „Open Innovation in Life Sciences“ (OIL), das von Mai 2008 bis April 2011 an der Universität Potsdam durchgeführt wurde. Er nimmt für sich in Anspruch, gerade Innovationsmanager in kleinen und mittleren Unternehmen (KMU) der Pharmaindustrie bei der Einführung des Open Innovation Managements zu unterstützen. Zielsetzung des Forschungsprojekts war es, (1) die Chancen und Risiken von Open Innovation unter besonderer Berücksichtigung der Anforderungen von Pharma-KMU zu analysieren und (2) daraus abgeleitet ein Konzept zur Implementierung von Open Innovation bei Pharma-KMU zu entwickeln. Der Ausgangspunkt des Projektes war die Erkenntnis, dass die Life Sciences-Branche im Allgemeinen und die Pharmaindustrie im Besonderen durch eine steigende Komplexität der Innovationsprozesse und eine zunehmende Tendenz zu Kooperationen gekennzeichnet ist. Vor diesem Hintergrund eröffnet gerade der Open Innovation-Ansatz für die Pharmabranche neue Gestaltungs- und damit Wachstumsmöglichkeiten. Open Innovation – definiert als die planvolle Öffnung der Innovationsprozesse und die strategische Einbindung des Unternehmensumfelds – wird dabei als zentraler Erfolgsfaktor für die Innovationsfähigkeit beschrieben. N2 - The job title of innovation manager is a comparatively new phenomenon in innovation management. The field of responsibility spans the entire innovation process, from fundamental research, development and production, until the market launch. The competencies include technology, product, service and market orientation, and an innovation manager should have skills in both the strategic as well as the operational sphere. They direct the innovation process, cultivate both internal and external contacts and organise the communication of all persons involved. It is self-evident that these tasks – particularly in the pharmaceutical industry with its complex and long-term processes – present a considerable challenge for every innovation manager. With this in view, the following guidelines are directed primarily at innovation managers in medium sized pharmaceutical companies. The guidelines convey the knowledge and tools that enable the development of market and customer oriented products and services in the pharmaceutical industry from the very start. By means of images and descriptions it demonstrates which steps should be followed from idea generation, to project realization, until the market launch. The centerpiece is formed by the division of the innovation process into manageable, clearly defined phases, specifically tailored for the pharmaceutical industry. The guidelines particularly focus on the question of how customers, suppliers, competitors, etc. can be integrated into this process. This approach – termed open innovation in innovation management – when applied as a deliberate strategy, has the potential to reduce the costs of development and to raise the speed of passage of projects. KW - Innovation KW - Open Innovation KW - pharmazeutische Industrie KW - kleine und mittlere Unternehmen KW - KMU KW - Innovationsprozess KW - Innovation KW - open innovation KW - pharmaceutical industry KW - small and medium-sized enterprises KW - SME KW - innovation process Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-50895 SN - 978-3-86956-103-5 PB - Universitätsverlag Potsdam CY - Potsdam ER -