TY - JOUR A1 - Sadovnichii, V. A. A1 - Panasyuk, M. I. A1 - Amelyushkin, A. M. A1 - Bogomolov, V. V. A1 - Benghin, V. V. A1 - Garipov, G. K. A1 - Kalegaev, V. V. A1 - Klimov, P. A. A1 - Khrenov, B. A. A1 - Petrov, V. L. A1 - Sharakin, S. A. A1 - Shirokov, A. V. A1 - Svertilov, S. I. A1 - Zotov, M. Y. A1 - Yashin, I. V. A1 - Gorbovskoy, E. S. A1 - Lipunov, V. M. A1 - Park, I. H. A1 - Lee, J. A1 - Jeong, S. A1 - Kim, M. B. A1 - Jeong, H. M. A1 - Shprits, Yuri Y. A1 - Angelopoulos, V. A1 - Russell, C. T. A1 - Runov, A. A1 - Turner, D. A1 - Strangeway, R. J. A1 - Caron, R. A1 - Biktemerova, S. A1 - Grinyuk, A. A1 - Lavrova, M. A1 - Tkachev, L. A1 - Tkachenko, A. A1 - Martinez, O. A1 - Salazar, H. A1 - Ponce, E. T1 - "Lomonosov" Satellite-Space Observatory to Study Extreme Phenomena in Space JF - Space science reviews N2 - The "Lomonosov" space project is lead by Lomonosov Moscow State University in collaboration with the following key partners: Joint Institute for Nuclear Research, Russia, University of California, Los Angeles (USA), University of Pueblo (Mexico), Sungkyunkwan University (Republic of Korea) and with Russian space industry organi-zations to study some of extreme phenomena in space related to astrophysics, astroparticle physics, space physics, and space biology. The primary goals of this experiment are to study: -Ultra-high energy cosmic rays (UHECR) in the energy range of the Greizen-ZatsepinKuzmin (GZK) cutoff; -Ultraviolet (UV) transient luminous events in the upper atmosphere; -Multi-wavelength study of gamma-ray bursts in visible, UV, gamma, and X-rays; -Energetic trapped and precipitated radiation (electrons and protons) at low-Earth orbit (LEO) in connection with global geomagnetic disturbances; -Multicomponent radiation doses along the orbit of spacecraft under different geomagnetic conditions and testing of space segments of optical observations of space-debris and other space objects; -Instrumental vestibular-sensor conflict of zero-gravity phenomena during space flight. This paper is directed towards the general description of both scientific goals of the project and scientific equipment on board the satellite. The following papers of this issue are devoted to detailed descriptions of scientific instruments. KW - Gamma-ray bursts KW - Ultra-high energy cosmic rays KW - Radiation belts KW - Space mission Y1 - 2017 U6 - https://doi.org/10.1007/s11214-017-0425-x SN - 0038-6308 SN - 1572-9672 VL - 212 SP - 1705 EP - 1738 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Mulder, Christian A1 - Boit, Alice A1 - Bonkowski, Michael A1 - De Ruiter, Peter C. A1 - Mancinelli, Giorgio A1 - Van der Heijden, Marcel G. A. A1 - Van Wijnen, Harm J. A1 - Vonk, J. Arie A1 - Rutgers, Michiel ED - Woodward, G T1 - A belowground perspective on dutch agroecosystems how soil organisms interact to support ecosystem services JF - Advances in ecological research JF - Advances in Ecological Research N2 - 1. New patterns and trends in land use are becoming increasingly evident in Europe's heavily modified landscape and else whereas sustainable agriculture and nature restoration are developed as viable long-term alternatives to intensively farmed arable land. The success of these changes depends on how soil biodiversity and processes respond to changes in management. To improve our understanding of the community structure and ecosystem functioning of the soil biota, we analyzed abiotic variables across 200 sites, and biological variables across 170 sites in The Netherlands, one of the most intensively farmed countries. The data were derived from the Dutch Soil Quality Network (DSQN), a long-term monitoring framework designed to obtain ecological insight into soil types (STs) and ecosystem types (ETs). 2. At the outset we describe STs and biota, and we estimate the contribution of various groups to the provision of ecosystem services. We focused on interactive effects of soil properties on community patterns and ecosystem functioning using food web models. Ecologists analyze soil food webs by means of mechanistic and statistical modelling, linking network structure to energy flow and elemental dynamics commonly based on allometric scaling. 3. We also explored how predatory and metabolic processes are constrained by body size, diet and metabolic type, and how these constraints govern the interactions within and between trophic groups. In particular, we focused on how elemental fluxes determine the strengths of ecological interactions, and the resulting ecosystem services, in terms of sustenance of soil fertility. 4. We discuss data mining, food web visualizations, and an appropriate categorical way to capture subtle interrelationships within the DSQN dataset. Sampled metazoans were used to provide an overview of below-ground processes and influences of land use. Unlike most studies to date we used data from the entire size spectrum, across 15 orders of magnitude, using body size as a continuous trait crucial for understanding ecological services. 5. Multimodality in the frequency distributions of body size represents a performance filter that acts as a buffer to environmental change. Large differences in the body-size distributions across ETs and STs were evident. Most observed trends support the hypothesis that the direct influence of ecological stoichiometry on the soil biota as an independent predictor (e.g. in the form of nutrient to carbon ratios), and consequently on the allometric scaling, is more dominant than either ET or ST. This provides opportunities to develop a mechanistic and physiologically oriented model for the distribution of species' body sizes, where responses of invertebrates can be predicted. 6. Our results highlight the different roles that organisms play in a number of key ecosystem services. Such a trait-based research has unique strengths in its rigorous formulation of fundamental scaling rules, as well as in its verifiability by empirical data. Nonetheless, it still has weaknesses that remain to be addressed, like the consequences of intraspecific size variation, the high degree of omnivory, and a possibly inaccurate assignment to trophic groups. 7. Studying the extent to which nutrient levels influence multitrophic interactions and how different land-use regimes affect soil biodiversity is clearly a fruitful area for future research to develop predictive models for soil ecosystem services under different management regimes. No similar efforts have been attempted previously for soil food webs, and our dataset has the potential to test and further verify its usefulness at an unprecedented space scale. Y1 - 2011 SN - 978-0-12-374794-5 U6 - https://doi.org/10.1016/B978-0-12-374794-5.00005-5 SN - 0065-2504 VL - 44 IS - 2 SP - 277 EP - 357 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Benina, Maria A1 - Ribeiro, Dimas Mendes A1 - Gechev, Tsanko S. A1 - Müller-Röber, Bernd A1 - Schippers, Jos H. M. T1 - A cell type-specific view on the translation of mRNAs from ROS-responsive genes upon paraquat treatment of Arabidopsis thaliana leaves JF - Plant, cell & environment : cell physiology, whole-plant physiology, community physiology N2 - Oxidative stress causes dramatic changes in the expression levels of many genes. The formation of a functional protein through successful mRNA translation is central to a coordinated cellular response. To what extent the response towards reactive oxygen species (ROS) is regulated at the translational level is poorly understood. Here we analysed leaf- and tissue-specific translatomes using a set of transgenic Arabidopsis thaliana lines expressing a FLAG-tagged ribosomal protein to immunopurify polysome-bound mRNAs before and after oxidative stress. We determined transcript levels of 171 ROS-responsive genes upon paraquat treatment, which causes formation of superoxide radicals, at the whole-organ level. Furthermore, the translation of mRNAs was determined for five cell types: mesophyll, bundle sheath, phloem companion, epidermal and guard cells. Mesophyll and bundle sheath cells showed the strongest response to paraquat treatment. Interestingly, several ROS-responsive transcription factors displayed cell type-specific translation patterns, while others were translated in all cell types. In part, cell type-specific translation could be explained by the length of the 5-untranslated region (5-UTR) and the presence of upstream open reading frames (uORFs). Our analysis reveals insights into the translational regulation of ROS-responsive genes, which is important to understanding cell-specific responses and functions during oxidative stress. The study illustrates the response of different Arabidopsis thaliana leaf cells and tissues to oxidative stress at the translational level, an aspect of reactive oxygen species (ROS) biology that has been little studied in the past. Our data reveal insights into how translational regulation of ROS-responsive genes is fine-tuned at the cellular level, a phenomenon contributing to the integrated physiological response of leaves to stresses involving changes in ROS levels. KW - Arabidopsis KW - gene regulation KW - oxidative stress KW - tissue-specific KW - translation Y1 - 2015 U6 - https://doi.org/10.1111/pce.12355 SN - 0140-7791 SN - 1365-3040 VL - 38 IS - 2 SP - 349 EP - 363 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Mota, Simon A1 - Leckelt, Marius A1 - Geukes, Katharina A1 - Nestler, Steffen A1 - Humberg, Sarah A1 - Schröder-Abe, Michela A1 - Schmukle, Stefan C. A1 - Back, Mitja D. T1 - A comprehensive examination of narcissists’ self-perceived and actual socioemotional cognition ability JF - Collabra: Psychology N2 - Narcissists are assumed to lack the motivation and ability to share and understand the mental states of others. Prior empirical research, however, has yielded inconclusive findings and has differed with respect to the specific aspects of narcissism and socioemotional cognition that have been examined. Here, we propose a differentiated facet approach that can be applied across research traditions and that distinguishes between facets of narcissism (agentic vs. antagonistic) on the one hand, and facets of socioemotional cognition ability (SECA; self-perceived vs. actual) on the other. Using five nonclinical samples in two studies (total N = 602), we investigated the effect of facets of grandiose narcissism on aspects of socioemotional cognition across measures of affective and cognitive empathy, Theory of Mind, and emotional intelligence, while also controlling for general reasoning ability. Across both studies, agentic facets of narcissism were found to be positively related to perceived SECA, whereas antagonistic facets of narcissism were found to be negatively related to perceived SECA. However, both narcissism facets were negatively related to actual SECA. Exploratory condition-based regression analyses further showed that agentic narcissists had a higher directed discrepancy between perceived and actual SECA: They self-enhanced their socio-emotional capacities. Implications of these results for the multifaceted theoretical understanding of the narcissism-SECA link are discussed. KW - narcissism KW - socioemotional cognition KW - self-perceived ability KW - actual ability KW - empathy KW - emotional intelligence KW - self-enhancement Y1 - 2018 U6 - https://doi.org/10.1525/collabra.174 SN - 2474-7394 VL - 5 IS - 1 PB - University of California Press CY - Oakland ER - TY - JOUR A1 - Sorge, Arndt T1 - A failure of capitalism the crisis of '08 and the descent into depression JF - Socio-economic review KW - financial crisis KW - financial institutions KW - financial markets KW - capitalism KW - globalization Y1 - 2011 SN - 1475-1461 VL - 9 IS - 1 SP - 169 EP - 186 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Risbey, James S. A1 - Lewandowsky, Stephan A1 - Cowtan, Kevin A1 - Oreskes, Naomi A1 - Rahmstorf, Stefan A1 - Jokimäki, Ari A1 - Foster, Grant T1 - A fluctuation in surface temperature in historical context BT - reassessment and retrospective on the evidence JF - Environmental research letters N2 - This work reviews the literature on an alleged global warming 'pause' in global mean surface temperature (GMST) to determine how it has been defined, what time intervals are used to characterise it, what data are used to measure it, and what methods used to assess it. We test for 'pauses', both in the normally understood meaning of the term to mean no warming trend, as well as for a 'pause' defined as a substantially slower trend in GMST. The tests are carried out with the historical versions of GMST that existed for each pause-interval tested, and with current versions of each of the GMST datasets. The tests are conducted following the common (but questionable) practice of breaking the linear fit at the start of the trend interval ('broken' trends), and also with trends that are continuous with the data bordering the trend interval. We also compare results when appropriate allowance is made for the selection bias problem. The results show that there is little or no statistical evidence for a lack of trend or slower trend in GMST using either the historical data or the current data. The perception that there was a 'pause' in GMST was bolstered by earlier biases in the data in combination with incomplete statistical testing. KW - climate variability KW - climate trends KW - temperature fluctuation KW - pause hiatus Y1 - 2018 U6 - https://doi.org/10.1088/1748-9326/aaf342 SN - 1748-9326 VL - 13 IS - 12 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Colombo, Stefanie M. A1 - Wacker, Alexander A1 - Parrish, Christopher C. A1 - Kainz, Martin J. A1 - Arts, Michael T. T1 - A fundamental dichotomy in long-chain polyunsaturated fatty acid abundance between and within marine and terrestrial ecosystems JF - Environmental reviews = Dossiers environnement N2 - Polyunsaturated fatty acids (PUFA), especially long-chain (i.e., >= 20 carbons) polyunsaturated fatty acids (LC-PUFA), are fundamental to the health and survival of marine and terrestrial organisms. Therefore, it is imperative that we gain a better understanding of their origin, abundance, and transfer between and within these ecosystems. We evaluated the natural variation in PUFA distribution and abundance that exists between and within these ecosystems by amassing and analyzing, using multivariate and analysis of variance (ANOVA) methods, >3000 fatty acid (FA) profiles from marine and terrestrial organisms. There was a clear dichotomy in LC-PUFA abundance between organisms in marine and terrestrial ecosystems, mainly driven by the C-18 PUFA in terrestrial organisms and omega-3 (n-3) LC-PUFA in marine organisms. The PUFA content of an organism depended on both its biome (marine vs terrestrial) and taxonomic group. Within the marine biome, the PUFA content varied among taxonomic groups. PUFA content of marine organisms was dependent on both geographic zone (i.e., latitude, and thus broadly related to temperature) and trophic level (a function of diet). The contents of n-3 LC-PUFA were higher in polar and temperate marine organisms than those from the tropics. Therefore, we conclude that, on a per capita basis, high latitude marine organisms provide a disproportionately large global share of these essential nutrients to consumers, including terrestrial predators. Our analysis also hints at how climate change, and other anthropogenic stressors, might act to negatively impact the global distribution and abundance of n-3 LC-PUFA within marine ecosystems and on the terrestrial consumers that depend on these subsidies. KW - climate change KW - food webs KW - omega-3 KW - polyunsaturated fatty acids KW - trophic ecology Y1 - 2017 U6 - https://doi.org/10.1139/er-2016-0062 SN - 1208-6053 SN - 1181-8700 VL - 25 SP - 163 EP - 174 PB - NRC Research Press CY - Ottawa ER - TY - JOUR A1 - Beisner, Beatrix E. A1 - Grossart, Hans-Peter A1 - Gasol, Josep M. T1 - A guide to methods for estimating phago-mixotrophy in nanophytoplankton JF - Journal of plankton research N2 - Growing attention to phytoplankton mixotrophy as a trophic strategy has led to significant revisions of traditional pelagic food web models and ecosystem functioning. Although some empirical estimates of mixotrophy do exist, a much broader set of in situ measurements are required to (i) identify which organisms are acting as mixotrophs in real time and to (ii) assess the contribution of their heterotrophy to biogeochemical cycling. Estimates are needed through time and across space to evaluate which environmental conditions or habitats favour mixotrophy: conditions still largely unknown. We review methodologies currently available to plankton ecologists to undertake estimates of plankton mixotrophy, in particular nanophytoplankton phago-mixotrophy. Methods are based largely on fluorescent or isotopic tracers, but also take advantage of genomics to identify phylotypes and function. We also suggest novel methods on the cusp of use for phago-mixotrophy assessment, including single-cell measurements improving our capacity to estimate mixotrophic activity and rates in wild plankton communities down to the single-cell level. Future methods will benefit from advances in nanotechnology, micromanipulation and microscopy combined with stable isotope and genomic methodologies. Improved estimates of mixotrophy will enable more reliable models to predict changes in food web structure and biogeochemical flows in a rapidly changing world. KW - flow cytometry KW - phagotrophy KW - phytoplankton KW - methods KW - fluorescence KW - microscopy KW - FISH KW - isotopic methods KW - phylotypes KW - carbon flows KW - gene sequencing Y1 - 2019 U6 - https://doi.org/10.1093/plankt/fbz008 SN - 0142-7873 SN - 1464-3774 VL - 41 IS - 2 SP - 77 EP - 89 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - McNamara, James T1 - A new edition of tacitus Germania BT - Rezension zu: Germania / Tacito ; saggio introduttivo, nuova traduzzione e note a cura di Sergio Audano. - Santarcangelo di Romagna: Rusconi Libri, 2020. - CXCVIII, 180 S. - ISBN: 978-88-18-03633-6 JF - The classical review / Classical Association Y1 - 2021 SN - 978-88-18-03633-6 U6 - https://doi.org/10.1017/S0009840X21002110 SN - 0009-840X SN - 1464-3561 VL - 71 IS - 2 SP - 418 EP - 420 PB - Cambridge Univ. Press CY - Cambridge ER - TY - JOUR A1 - Shapiro, B. A1 - Hofreiter, Michael T1 - A paleogenomic perspective on evolution and gene function: new insights from ancient DNA JF - Science N2 - The publication of partial and complete paleogenomes within the last few years has reinvigorated research in ancient DNA. No longer limited to short fragments of mitochondrial DNA, inference of evolutionary processes through time can now be investigated from genome-wide data sampled as far back as 700,000 years. Tremendous insights have been made, in particular regarding the hominin lineage. With rare exception, however, a paleogenomic perspective has been mired by the quality and quantity of recoverable DNA. Though conceptually simple, extracting ancient DNA remains challenging, and sequencing ancient genomes to high coverage remains prohibitively expensive for most laboratories. Still, with improvements in DNA isolation and declining sequencing costs, the taxonomic and geographic purview of paleogenomics is expanding at a rapid pace. With improved capacity to screen large numbers of samples for those with high proportions of endogenous ancient DNA, paleogenomics is poised to become a key technology to better understand recent evolutionary events. Y1 - 2014 U6 - https://doi.org/10.1126/science.1236573 SN - 0036-8075 SN - 1095-9203 VL - 343 IS - 6169 PB - American Assoc. for the Advancement of Science CY - Washington ER - TY - JOUR A1 - Arnold, Anne A1 - Nikoloski, Zoran T1 - A quantitative comparison of Calvin-Benson cycle models JF - Trends in plant science N2 - The Calvin-Benson cycle (CBC) provides the precursors for biomass synthesis necessary for plant growth. The dynamic behavior and yield of the CBC depend on the environmental conditions and regulation of the cellular state. Accurate quantitative models hold the promise of identifying the key determinants of the tightly regulated CBC function and their effects on the responses in future climates. We provide an integrative analysis of the largest compendium of existing models for photosynthetic processes. Based on the proposed ranking, our framework facilitates the discovery of best-performing models with regard to metabolomics data and of candidates for metabolic engineering. Y1 - 2011 U6 - https://doi.org/10.1016/j.tplants.2011.09.004 SN - 1360-1385 VL - 16 IS - 12 SP - 676 EP - 683 PB - Elsevier CY - London ER - TY - JOUR A1 - Apriyanto, Ardha A1 - Compart, Julia A1 - Fettke, Jörg T1 - A review of starch, a unique biopolymer - structure, metabolism and in planta modifications JF - Plant science : an international journal of experimental plant biology N2 - Starch is a complex carbohydrate polymer produced by plants and especially by crops in huge amounts. It consists of amylose and amylopectin, which have alpha-1,4-and alpha-1,6-linked glucose units. Despite this simple chemistry, the entire starch metabolism is complex, containing various (iso)enzymes/proteins. However, whose interplay is still not yet fully understood. Starch is essential for humans and animals as a source of nutrition and energy. Nowadays, starch is also commonly used in non-food industrial sectors for a variety of purposes. However, native starches do not always satisfy the needs of a wide range of (industrial) applications. This review summarizes the structural properties of starch, analytical methods for starch characterization, and in planta starch modifications. KW - starch KW - starch structure KW - starch surface KW - starch modifications; KW - analytics Y1 - 2022 U6 - https://doi.org/10.1016/j.plantsci.2022.111223 SN - 0168-9452 SN - 1873-2259 VL - 318 PB - Elsevier Science CY - Amsterdam [u.a.] ER - TY - JOUR A1 - Gao, Yongbo A1 - Merz, Christoph A1 - Lischeid, Gunnar A1 - Schneider, Michael T1 - A review on missing hydrological data processing JF - Environmental earth sciences N2 - Like almost all fields of science, hydrology has benefited to a large extent from the tremendous improvements in scientific instruments that are able to collect long-time data series and an increase in available computational power and storage capabilities over the last decades. Many model applications and statistical analyses (e.g., extreme value analysis) are based on these time series. Consequently, the quality and the completeness of these time series are essential. Preprocessing of raw data sets by filling data gaps is thus a necessary procedure. Several interpolation techniques with different complexity are available ranging from rather simple to extremely challenging approaches. In this paper, various imputation methods available to the hydrological researchers are reviewed with regard to their suitability for filling gaps in the context of solving hydrological questions. The methodological approaches include arithmetic mean imputation, principal component analysis, regression-based methods and multiple imputation methods. In particular, autoregressive conditional heteroscedasticity (ARCH) models which originate from finance and econometrics will be discussed regarding their applicability to data series characterized by non-constant volatility and heteroscedasticity in hydrological contexts. The review shows that methodological advances driven by other fields of research bear relevance for a more intensive use of these methods in hydrology. Up to now, the hydrological community has paid little attention to the imputation ability of time series models in general and ARCH models in particular. KW - Missing data KW - Imputation KW - Hydrological time series analysis KW - ARCH KW - ARIMA KW - Heteroscedasticity Y1 - 2018 U6 - https://doi.org/10.1007/s12665-018-7228-6 SN - 1866-6280 SN - 1866-6299 VL - 77 IS - 2 PB - Springer CY - New York ER - TY - JOUR A1 - Kappel, Christian A1 - Cuong Nguyen Huu, A1 - Lenhard, Michael T1 - A short story gets longer: recent insights into the molecular basis of heterostyly JF - Journal of experimental botany N2 - Heterostyly is a fascinating adaptation to promote outbreeding and a classical paradigm of botany. In the most common type of heterostyly, plants either form flowers with long styles and short stamens, or short styles and long stamens. This reciprocal organ positioning reduces pollen wastage and promotes cross-pollination, thus increasing male fitness. In addition, in many heterostylous species selfing and the generation of unfit progeny due to inbreeding depression is limited by a self-incompatibility system, thus promoting female fitness. The two floral forms are genetically determined by the S locus as a complex supergene, namely a chromosomal region containing several individual genes that control the different traits, such as style or stamen length, and are held together by very tight linkage due to suppressed recombination. Recent molecular-genetic studies in several systems, including Turnera, Fagopyrum, Linum, and Primula have begun to identify and characterize the causal heterostyly genes residing at the S locus. An emerging theme from several families is that the dominant S haplotype represents a hemizygous region not present on the recessive s haplotype. This provides an explanation for the suppressed recombination and suggests a scenario for the chromosomal evolution of the S locus. In this review, we discuss the results from recent molecular-genetic analyses in light of the classical models on the genetics and evolution of heterostyly. KW - CYP734A50 KW - distyly KW - GLOBOSA2 KW - hemizygosity KW - heterostyly KW - Primula KW - S locus KW - supergene KW - tristyly Y1 - 2017 U6 - https://doi.org/10.1093/jxb/erx387 SN - 0022-0957 SN - 1460-2431 VL - 68 SP - 5719 EP - 5730 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Schuster, Isabell A1 - Krahé, Barbara T1 - Abuse of Elders Living at Home: A Review of Recent Prevalence Studies JF - International Journal of Behavioral Science N2 - This article presents evidence from recent studies on the prevalence of different forms of elder abuse. After a review of definitions and measures of elder abuse, the findings of 20 original studies containing 26 samples from 17 countries published since 2010 are summarized. Overall prevalence rates showed a high variability across studies, ranging from 2.2% in a study from Ireland to 43.7% in a study from Egypt. Evidence on gender differences in the vulnerability for abuse and the predominant relationship constellations between abusers and victims did not yield a consistent picture across studies. Conceptual and methodological reasons for the variability in prevalence rates are discussed, and an outlook for future research is presented. In particular, consistent definitions and measures are needed to facilitate the comparative analysis of elder abuse in different studies and cultural contexts. KW - elder abuse KW - neglect KW - prevalence KW - family KW - violence KW - review Y1 - 2016 SN - 1906-4675 VL - 11 SP - 93 EP - 108 PB - Behavioral Science Research Institute, Srinakharinwirot University CY - Bangkok ER - TY - JOUR A1 - Mutlu, Hatice A1 - de Espinosa, Lucas Montero A1 - Meier, Michael A. R. T1 - Acyclic diene metathesis a versatile tool for the construction of defined polymer architectures JF - Chemical Society reviews N2 - Two decades have passed since the metathesis polymerisation of alpha,omega-dienes was successfully demonstrated by the group of Wagener and the term acyclic diene metathesis (ADMET) polymerisation was coined. Since then, the advances of metathesis chemistry have allowed to expand the scope of this versatile polymerisation reaction that nowadays finds applications in different fields, such as polymer, material, or medicinal chemistry. This critical review provides an insight into the historical aspects of ADMET and a detailed overview of the work done to date applying this versatile polymerisation reaction (221 references). Y1 - 2011 U6 - https://doi.org/10.1039/b924852h SN - 0306-0012 VL - 40 IS - 3 SP - 1404 EP - 1445 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Antonietti, Markus A1 - Lopez-Salas, Nieves A1 - Primo, Ana T1 - Adjusting the Structure and Electronic Properties of Carbons for Metal-Free Carbocatalysis of Organic Transformations JF - Advanced materials N2 - Carbon nanomaterials doped with some other lightweight elements were recently described as powerful, heterogeneous, metal-free organocatalysts, adding to their high performance in electrocatalysis. Here, recent observations in traditional catalysis are reviewed, and the underlying reaction mechanisms of the catalyzed organic transformations are explored. In some cases, these are due to specific active functional sites, but more generally the catalytic activity relates to collective properties of the conjugated nanocarbon frameworks and the electron transfer from and to the catalytic centers and substrates. It is shown that the !earnings are tightly related to those of electrocatalysis; i.e., the search for better electrocatalysts also improves chemocatalysis, and vice versa. Carbon-carbon heterojunction effects and some perspectives on future possibilities are discussed at the end. KW - active sites KW - carbocatalysis KW - carbon electrical collective properties KW - metal-free KW - nanocarbon materials Y1 - 2018 U6 - https://doi.org/10.1002/adma.201805719 SN - 0935-9648 SN - 1521-4095 VL - 31 IS - 13 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Woodhouse, Jason Nicholas A1 - Makower, A. Katharina A1 - Yeung, Anna C. Y. A1 - Ongley, Sarah E. A1 - Micallef, Melinda L. A1 - Moffitt, Michelle C. A1 - Neilan, Brett A. T1 - Advances in genomics, transcriptomics and proteomics of toxin-producing cyanobacteria JF - Environmental microbiology reports N2 - A common misconception persists that the genomes of toxic and non-toxic cyanobacterial strains are largely conserved with the exception of the presence or absence of the genes responsible for toxin production. Implementation of -omics era technologies has challenged this paradigm, with comparative analyses providing increased insight into the differences between strains of the same species. The implementation of genomic, transcriptomic and proteomic approaches has revealed distinct profiles between toxin-producing and non-toxic strains. Further, metagenomics and metaproteomics highlight the genomic potential and functional state of toxic bloom events over time. In this review, we highlight how these technologies have shaped our understanding of the complex relationship between these molecules, their producers and the environment at large within which they persist. Y1 - 2016 U6 - https://doi.org/10.1111/1758-2229.12366 SN - 1758-2229 VL - 8 SP - 3 EP - 13 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Basler, Georg A1 - Fernie, Alisdair R. A1 - Nikoloski, Zoran T1 - Advances in metabolic flux analysis toward genome-scale profiling of higher organisms JF - Bioscience reports : communications and reviews in molecular and cellular biology N2 - Methodological and technological advances have recently paved the way for metabolic flux profiling in higher organisms, like plants. However, in comparison with omics technologies, flux profiling has yet to provide comprehensive differential flux maps at a genome-scale and in different cell types, tissues, and organs. Here we highlight the recent advances in technologies to gather metabolic labeling patterns and flux profiling approaches. We provide an opinion of how recent local flux profiling approaches can be used in conjunction with the constraint-based modeling framework to arrive at genome-scale flux maps. In addition, we point at approaches which use metabolomics data without introduction of label to predict either non-steady state fluxes in a time-series experiment or flux changes in different experimental scenarios. The combination of these developments allows an experimentally feasible approach for flux-based large-scale systems biology studies. Y1 - 2018 U6 - https://doi.org/10.1042/BSR20170224 SN - 0144-8463 SN - 1573-4935 VL - 38 PB - Portland Press (London) CY - London ER - TY - JOUR A1 - Randall, Matthew J. A1 - Jüngel, Astrid A1 - Rimann, Markus A1 - Wuertz-Kozak, Karin T1 - Advances in the biofabrication of 3D Skin in vitro BT - healthy and pathological models JF - Frontiers in Bioengineeringand Biotechnology N2 - The relevance for in vitro three-dimensional (3D) tissue culture of skin has been present for almost a century. From using skin biopsies in organ culture, to vascularized organotypic full-thickness reconstructed human skin equivalents, in vitro tissue regeneration of 3D skin has reached a golden era. However, the reconstruction of 3D skin still has room to grow and develop. The need for reproducible methodology, physiological structures and tissue architecture, and perfusable vasculature are only recently becoming a reality, though the addition of more complex structures such as glands and tactile corpuscles require advanced technologies. In this review, we will discuss the current methodology for biofabrication of 3D skin models and highlight the advantages and disadvantages of the existing systems as well as emphasize how new techniques can aid in the production of a truly physiologically relevant skin construct for preclinical innovation. Y1 - 2018 U6 - https://doi.org/10.3389/fbioe.2018.00154 SN - 2296-4185 VL - 6 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Demske, Ulrike T1 - Adverbial Clauses, Main Clause Phenomena, and the composition of the Left Periphery JF - Studies in language Y1 - 2015 U6 - https://doi.org/10.1075/sl.39.1.09dem SN - 0378-4177 VL - 39 IS - 1 SP - 235 EP - 243 PB - Benjamins CY - Amsterdam ER - TY - JOUR A1 - Jolivet, Laurent A1 - Faccenna, Claudio A1 - Huet, Benjamin A1 - Labrousse, Loic A1 - Le Pourhiet, Laetitia A1 - Lacombe, Olivier A1 - Lecomte, Emmanuel A1 - Burov, Evguenii A1 - Denele, Yoann A1 - Brun, Jean-Pierre A1 - Philippon, Melody A1 - Paul, Anne A1 - Salaue, Gwenaelle A1 - Karabulut, Hayrullah A1 - Piromallo, Claudia A1 - Monie, Patrick A1 - Gueydan, Frederic A1 - Okay, Aral I. A1 - Oberhänsli, Roland A1 - Pourteau, Amaury A1 - Augier, Romain A1 - Gadenne, Leslie A1 - Driussi, Olivier T1 - Aegean tectonics strain localisation, slab tearing and trench retreat JF - Tectonophysics : international journal of geotectonics and the geology and physics of the interior of the earth N2 - We review the geodynamic evolution of the Aegean-Anatolia region and discuss strain localisation there over geological times. From Late Eocene to Present, crustal deformation in the Aegean backarc has localised progressively during slab retreat. Extension started with the formation of the Rhodope Metamorphic Core Complex (Eocene) and migrated to the Cyclades and the northern Menderes Massif (Oligocene and Miocene), accommodated by crustal-scale detachments and a first series of core complexes (MCCs). Extension then localised in Western Turkey, the Corinth Rift and the external Hellenic arc after Messinian times, while the North Anatolian Fault penetrated the Aegean Sea. Through time the direction and style of extension have not changed significantly except in terms of localisation. The contributions of progressive slab retreat and tearing, basal drag, extrusion tectonics and tectonic inheritance are discussed and we favour a model (I) where slab retreat is the main driving engine, (2) successive slab tearing episodes are the main causes of this stepwise strain localisation and (3) the inherited heterogeneity of the crust is a major factor for localising detachments. The continental crust has an inherited strong heterogeneity and crustal-scale contacts such as major thrust planes act as weak zones or as zones of contrast of resistance and viscosity that can localise later deformation. The dynamics of slabs at depth and the asthenospheric flow due to slab retreat also have influence strain localisation in the upper plate. Successive slab ruptures from the Middle Miocene to the late Miocene have isolated a narrow strip of lithosphere, still attached to the African lithosphere below Crete. The formation of the North Anatolian Fault is partly a consequence of this evolution. The extrusion of Anatolia and the Aegean extension are partly driven from below (asthenospheric flow) and from above (extrusion of a lid of rigid crust). KW - Backarc extension KW - Slab retreat KW - Asthenospheric flow KW - Strain localisation KW - Aegean Sea KW - Metamorphic core complex Y1 - 2013 U6 - https://doi.org/10.1016/j.tecto.2012.06.011 SN - 0040-1951 VL - 597 SP - 1 EP - 33 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Ekkekakis, Panteleimon A1 - Brand, Ralf T1 - Affective responses to and automatic affective valuations of physical activity BT - Fifty years of progress on the seminal question in exercise psychology JF - Psychology of sport and exercise N2 - Objective: To critically review developments over the first fifty years of research (1967-2017) on (a) how people feel when they participate in exercise and physical activity, and (b) the implications of these responses for their willingness to become and remain active. Design: Non-systematic narrative review. Method: Representative sources were selected through a combination of computer searches and cross-referencing. Results: For over three decades, exercise psychology exhibited a fixation on the idea that exercise and physical activity make people feel better. This notion, however, seemed to contrast with evidence that most adults in industrialized countries exhibit low levels of activity. In the last two decades, a critical examination and overhaul of the methodological platform resulted in the delineation of a dose-response pattern that encompasses positive as well as negative affective responses, and revealed marked interindividual differences. An emerging literature is aimed at refining and testing integrative dual-process models that can offer specific predictions about the behaviors that may result from the interaction of automatic processes (theorized to be heavily influenced by past affective experiences) and deliberative processes (such as cognitive appraisals). Conclusions: Affective responses to exercise and physical activity are more complex than the long-popularized "feel-better" effect, encompassing both pleasant and unpleasant experiences and exhibiting marked inter individual variation. The potential of affective experiences to influence subsequent behavior offers an opportunity for an expanded theoretical perspective in exercise psychology. KW - Pleasure KW - Displeasure KW - Ventilatory threshold KW - Automatic affective valuation Y1 - 2019 U6 - https://doi.org/10.1016/j.psychsport.2018.12.018 SN - 1469-0292 SN - 1878-5476 VL - 42 SP - 130 EP - 137 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Eckstein, Lars T1 - Agnew, V., Enlightenment Orpheus: the Power of Music in Other Worlds; New York, Oxford Univ. Press, 2008 BT - Enlightenment Orpheus: the Power of Music in Other Worlds Y1 - 2011 ER - TY - JOUR A1 - Langhammer, Maria A1 - Thober, Jule A1 - Lange, Martin A1 - Frank, Karin A1 - Grimm, Volker T1 - Agricultural landscape generators for simulation models BT - a review of existing solutions and an outline of future directions JF - Ecological modelling : international journal on ecological modelling and engineering and systems ecolog N2 - There is an increasing need for an assessment of the impacts of land use and land use change (LUCC). In this context, simulation models are valuable tools for investigating the impacts of stakeholder actions or policy decisions. Agricultural landscape generators (ALGs), which systematically and automatically generate realistic but simplified representations of land cover in agricultural landscapes, can provide the input for LUCC models. We reviewed existing ALGs in terms of their objectives, design and scope. We found eight ALGs that met our definition. They were based either on generic mathematical algorithms (pattern-based) or on representations of ecological or land use processes (process-based). Most ALGs integrate only a few landscape metrics, which limits the design of the landscape pattern and thus the range of applications. For example, only a few specific farming systems have been implemented. We conclude that existing ALGs contain useful approaches that can be used for specific purposes, but ideally generic modular ALGs are developed that can be used for a wide range of scenarios, regions and model types. We have compiled features of such generic ALGs and propose a possible software architecture. Considerable joint efforts are required to develop such generic ALGs, but the benefits in terms of a better understanding and development of more efficient agricultural policies would be high. KW - Agricultural landscape KW - Field pattern KW - Agricultural landscape generator KW - Landscape simulator KW - Neutral landscape model KW - Process-based model Y1 - 2019 U6 - https://doi.org/10.1016/j.ecolmodel.2018.12.010 SN - 0304-3800 SN - 1872-7026 VL - 393 SP - 135 EP - 151 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Haßler, Gerda T1 - Alarcos Llorach, Emilio (1922-1998) Y1 - 2006 SN - 0-08-044299-4 ER - TY - JOUR A1 - Jeglinski-Mende, Melinda A. T1 - Alcohol in the aging brain BT - the interplay between alcohol consumption, cognitive decline and the cardiovascular system JF - Frontiers in neuroscience N2 - As our society grows older new challenges for medicine and healthcare emerge. Age-related changes of the body have been observed in essential body functions, particularly in the loco-motor system, in the cardiovascular system and in cognitive functions concerning both brain plasticity and changes in behavior. Nutrition and lifestyle, such as nicotine intake and chronic alcohol consumption, also contribute to biological changes in the brain. This review addresses the effect of alcohol consumption on cognitive decline, changes in brain plasticity in the aging brain and on cardiovascular health in aging. Thus, studies on the interplay of chronic alcohol intake and either cognitive decline or cognitive preservation are outlined. Because of the inconsistency in the literature of whether alcohol consumption preserves cognitive functions in the aging brain or whether it accelerates cognitive decline, it is crucial to consider individual contributing factors such as culture, health and lifestyle in future studies. KW - cognitive decline KW - neuroplasticity KW - AUD KW - alcohol consumption KW - aging brain Y1 - 2019 U6 - https://doi.org/10.3389/fnins.2019.00713 SN - 1662-453X VL - 13 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Eckstein, Lars T1 - Alder, E., Hauck, D., Music and Literature: Music in the Works of Anthony Burgess and E.M. Forster - An Interdisciplinary Study; Tübingen, Francke, 2005 BT - Music and Literature: Music in the Works of Anthony Burgess and E.M. Forster - An Interdisciplinary Study Y1 - 2006 ER - TY - JOUR A1 - Kita-Tokarczyk, Katarzyna A1 - Junginger, Mathias A1 - Belegrinou, Serena A1 - Taubert, Andreas ED - Muller, AHE ED - Borisov, O T1 - Amphiphilic polymers at interfaces JF - Advances in polymer science JF - Advances in Polymer Science N2 - Self-assembly phenomena in block copolymer systems are attracting considerable interest from the scientific community and industry alike. Particularly interesting is the behavior of amphiphilic copolymers, which can self-organize into nanoscale-sized objects such as micelles, vesicles, or tubes in solution, and which form well-defined assemblies at interfaces such as air-liquid, air-solid, or liquid-solid. Depending on the polymer chemistry and architecture, various types of organization at interfaces can be expected, and further exploited for applications in nanotechnology, electronics, and biomedical sciences. In this article, we discuss the formation and characterization of Langmuir monolayers from various amphiphilic block copolymers, including chargeable and thus pH-responsivematerials. Solid-supported polymer films are reviewed in the context of alteration of surface properties by ultrathin polymer layers and the possibilities for application in tissue engineering, sensors and biomaterials. Finally, we focus on how organic and polymer monolayers influence the growth of inorganic materials. This is a truly biomimetic approach since Nature uses soft interfaces to control the nucleation, growth, and morphology of biominerals such as calcium phosphate, calcium carbonate, and silica. KW - Amphiphilic polymers KW - Langmuir monolayers KW - Polymers on surfaces KW - Bio-inspired mineralization Y1 - 2011 SN - 978-3-642-22297-9 U6 - https://doi.org/10.1007/12_2010_58 SN - 0065-3195 VL - 242 IS - 1 SP - 151 EP - 201 PB - Springer CY - Berlin ER - TY - JOUR A1 - Schulze-Gabrechten, Lena T1 - An organizational approach to public governance BT - understanding and design JF - Public administration N2 - In this volume, Egeberg and Trondal put forward an ‘organizational approach to public governance’ (p. 1) that, in their view, complements existing explanations for organizational change and behaviour in governance processes (‘Understanding’) and produces relevant advice for practitioners, specifically anyone involved in reorganizing public administration (‘Design’). Following the authors’ introduction of the theoretical reasoning behind their approach (chapter 1), they present supporting findings that are based on new material (chapters 2 and 9), but mainly draw on six previously published research articles (chapters 3–8). Egeberg and Trondal conclude with possible ‘design implications’ of said findings (chapter 9). Their ‘organizational approach’ focuses on the impact of selected organizational characteristics on decision‐making in and on behalf of government organizations in policy‐making generally (‘public governance’) and administrative politics more specifically (‘meta‐governance’). The authors concentrate on three sets of ‘classical’ organizational characteristics: structure (mainly vertical and horizontal specialization), demography (personnel composition), and locus (geographical location). The conceptual part of the volume convincingly summarizes ‘formal organization matters’—arguments from the literature for each of the individual organizational factors. Their main, already well‐established argument is that the way an organization is formally set up makes some (reform) decisions more likely than others—a line of reasoning that the authors present as neglected in governance literature. In the following five empirical chapters, the authors show that aspects of horizontal and vertical specialization—mainly operationalized by Gulicks’ principles of horizontal specialization and the idea of primary versus secondary affiliation of staff—affect organizational behaviour. Readers learn that whether government levels are organized according to a territorial or non‐territorial principle impacts the power relationship between levels: non‐territorial organization at the supranational level tends to empower the centre against lower levels of government. There are two chapters on the decision‐making behaviour of commissioners and officials in the European Commission, both showing that organizational affiliation trumps demographic background factors such as nationality, even with temporary staff. Chapter 5 addresses coordination dynamics in the European multi‐level system and finds that coordination at the territorially organized national level thwarts non‐territorially organized coordination at the supranational level, resulting in the phenomenon of ‘direct’ national administration bypassing their national executives. Further, the authors show that vertical specialization—while controlling for other factors such as issue salience—has an effect on officials’ behaviour at the national level: agency officials in Norway report significantly less sensitivity towards political signals from the political executive than their colleagues in ministries. Chapter 7 discusses the relevance of geographical location for the relationship between subordinated organizations and their political executive. The authors find that the site of Norwegian agencies does not significantly affect their autonomy, influence, or inter‐institutional coordination with the superior ministry. The last empirical chapter focuses on the effect of formal organization on meta‐governance, that is, administrative politics. Based on a qualitative case study of a reorganization process in Norway in 2003 involving the synchronized relocation of several agencies after many failed attempts, the authors conclude that administrative reforms can be politically steered and controlled through the organization of the reform process. They argue that amongst other factors the strategic exclusion of opposing actors from the reform process as well as the deliberate increase in situations demanding quick decisions (‘action rationality’, p. 119) by political leaders helps explain the reform's unexpected success. The last chapter is dedicated to the synthesis of the results and to design implications. Supported by new data from a 2016 survey among Norwegian public officials, the authors conclude that organizational position is the most important influencer of decision‐making behaviour, with educational background and previous job experience also playing a large role (p. 135). Consequently, their suggestions for practitioners involved in meta‐governance processes concentrate on aspects of the deliberate crafting of organizational specialization to shape organizational positions, and spend less time discussing location and employee demographics. The authors illustrate and contextualize their recommendations with the help of three empirical examples: organizing good governance by balancing political control and independence in the case of agencification, organizing for coping with boundary‐spanning challenges such as climate change through inter‐organizational structural arrangements, and designing permanent organizational structures for innovative reforms in the public sector (pp. 137 ff.). This volume is an excellent compilation of theoretically informed applications of the all too often undefined ‘organization matters’ argument. It juxtaposes—particularly in the theory chapter and in the last chapter on design implications—organizational arguments against other explanations of organizational change like historical institutionalism or the garbage can model of decision‐making. However, two major aspects of the book's approach are less convincing. First, supplementary explanations such as the garbage can model that are discussed in the reflections on meta‐governance are neither argumentatively nor empirically applied to public governance; why should, for example, the ‘solutions in search of a problem’ idea only be applicable to decisions on reform policy, but not to decisions in all other policy areas? Similarly, it would have been nice to read more on the authors’ idea on the interaction between organizational factors and between them and other explanations in the empirical cases on public governance—this would have allowed the reader to get a better idea about how much formal organization matters. The view on bureaucrats’ demographic background is slightly confusing: it is presented as a competing approach (p. 7), but also as one of the main organizational factors (p. 12). Second, as the authors themselves state, the concept of governance is about ‘steering through collective action’ (p. 3) and focuses on interactive processes, and explicitly includes non‐governmental actors in the policy‐making equation. Against this background it seems unfortunate that most of the work presented in the book takes an exclusively governmental perspective and the justification for it remains rather superficial. It would be preferable and even necessary to see the organizational arguments—at least theoretically or through discussing appropriate literature—applied to interactive governance processes involving other actors and/or to non‐bureaucratic organizations. Regarding its methodology, the specifics of the proposed approach deserve to be addressed more systematically and critically in the book. Except for chapters 2, 3 and 5 (literature‐based studies) as well as chapter 8 (single case study), the empirical studies follow a quantitative logic and are informed by data on self‐reported behaviour through large‐N panel surveys with public officials. In terms of analysis, descriptive statistics or basic inferential statistics (linear regression) are employed. Certainly, the authors are aware of the limitations of their data sources, such as the results being possibly affected by social desirability, and they discuss and justify them in the chapters individually (e.g., on pp. 47, 89). Still, their approach could be strengthened with a more cautious account on the extent to which their choice of data and methods is able to uncover the ‘causal impact of organizational factors in public governance processes’ (p. 131, emphasis added) and with some suggestions for widening their methodological toolbox in the future. On this note, the survey method presented as new on p. 135 is not a particularly convincing choice. The authors do not lay out a research agenda; a surprising omission. This is, however, somewhat made up for by the concluding chapter's stimulating discussion of the possible real‐world implications of their findings and perspective, skilfully using organization theory as a ‘craft’ (p. 29). Y1 - 2019 U6 - https://doi.org/10.1111/padm.12590 SN - 0033-3298 SN - 1467-9299 VL - 97 IS - 2 SP - 483 EP - 485 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Lecourieux, Fatma A1 - Kappel, Christian A1 - Lecourieux, David A1 - Serrano, Alejandra A1 - Torres, Elizabeth A1 - Arce-Johnson, Patricio A1 - Delrot, Serge T1 - An update on sugar transport and signalling in grapevine JF - Journal of experimental botany N2 - In addition to their role as a source of reduced carbon, sugars may directly or indirectly control a wide range of activities in plant cells, through transcriptional and post-translational regulation. This control has been studied in detail using Arabidopsis thaliana, where genetic analysis offers many possibilities. Much less is known about perennial woody species. For several years, various aspects of sugar sensing and signalling have been investigated in the grape (Vitis vinifera L.) berry, an organ that accumulates high concentrations of hexoses in the vacuoles of flesh cells. Here we review various aspects of this topic: the molecular basis of sugar transport and its regulation by sugars in grapevine; the functional analysis of several sugar-induced genes; the effects of some biotic and abiotic stresses on the sugar content of the berry; and finally the effects of exogenous sugar supply on the ripening process in field conditions. A picture of complex feedback and multiprocess regulation emerges from these data. KW - Fruit biology KW - grapevine KW - signalling KW - stress KW - sugar KW - transport Y1 - 2014 U6 - https://doi.org/10.1093/jxb/ert394 SN - 0022-0957 SN - 1460-2431 VL - 65 IS - 3 SP - 821 EP - 832 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Rajasundaram, Dhivyaa A1 - Selbig, Joachim T1 - analysis JF - Current opinion in plant biology N2 - The development of ‘omics’ technologies has progressed to address complex biological questions that underlie various plant functions thereby producing copious amounts of data. The need to assimilate large amounts of data into biologically meaningful interpretations has necessitated the development of statistical methods to integrate multidimensional information. Throughout this review, we provide examples of recent outcomes of ‘omics’ data integration together with an overview of available statistical methods and tools. Y1 - 2016 U6 - https://doi.org/10.1016/j.pbi.2015.12.010 SN - 1369-5266 SN - 1879-0356 VL - 30 SP - 57 EP - 61 PB - Elsevier CY - London ER - TY - JOUR A1 - Heck, Christian A1 - Michaeli, Yael A1 - Bald, Ilko A1 - Ebenstein, Yuval T1 - Analytical epigenetics BT - single-molecule optical detection of DNA and histone modifications JF - Current Opinion in Biotechnology N2 - The field of epigenetics describes the relationship between genotype and phenotype, by regulating gene expression without changing the canonical base sequence of DNA. It deals with molecular genomic information that is encoded by a rich repertoire of chemical modifications and molecular interactions. This regulation involves DNA, RNA and proteins that are enzymatically tagged with small molecular groups that alter their physical and chemical properties. It is now clear that epigenetic alterations are involved in development and disease, and thus, are the focus of intensive research. The ability to record epigenetic changes and quantify them in rare medical samples is critical for next generation diagnostics. Optical detection offers the ultimate single-molecule sensitivity and the potential for spectral multiplexing. Here we review recent progress in ultrasensitive optical detection of DNA and histone modifications. Y1 - 2018 U6 - https://doi.org/10.1016/j.copbio.2018.09.006 SN - 0958-1669 SN - 1879-0429 VL - 55 SP - 151 EP - 158 PB - Elsevier CY - London ER - TY - JOUR A1 - Großart, Hans-Peter A1 - Rojas-Jimenez, Keilor T1 - Aquatic fungi: targeting the forgotten in microbial ecology JF - Current opinion in microbiology N2 - Fungi constitute important and conspicuous components of aquatic microbial communities, but their diversity and functional roles remain poorly characterized. New methods and conceptual frameworks are required to accurately describe their ecological roles, involvement in global cycling processes, and utility for human activities, considering both cultivation independent techniques as well as experiments in laboratory and in natural ecosystems. Here we highlight recent developments and extant knowledge gaps in aquatic mycology, and provide a conceptual model to expose the importance of fungi in aquatic food webs and related biogeochemical processes. Y1 - 2016 U6 - https://doi.org/10.1016/j.mib.2016.03.016 SN - 1369-5274 SN - 1879-0364 VL - 31 SP - 140 EP - 145 PB - Elsevier CY - London ER - TY - JOUR A1 - Hargis, Hailey A1 - Gotsch, Sybil G. A1 - Porada, Philipp A1 - Moore, Georgianne W. A1 - Ferguson, Briana A1 - Van Stan, John T. T1 - Arboreal epiphytes in the soil-atmosphere interface BT - how often are the biggest "buckets" in the canopy empty? JF - Geosciences N2 - Arboreal epiphytes (plants residing in forest canopies) are present across all major climate zones and play important roles in forest biogeochemistry. The substantial water storage capacity per unit area of the epiphyte "bucket" is a key attribute underlying their capability to influence forest hydrological processes and their related mass and energy flows. It is commonly assumed that the epiphyte bucket remains saturated, or near-saturated, most of the time; thus, epiphytes (particularly vascular epiphytes) can store little precipitation, limiting their impact on the forest canopy water budget. We present evidence that contradicts this common assumption from (i) an examination of past research; (ii) new datasets on vascular epiphyte and epi-soil water relations at a tropical montane cloud forest (Monteverde, Costa Rica); and (iii) a global evaluation of non-vascular epiphyte saturation state using a process-based vegetation model, LiBry. All analyses found that the external and internal water storage capacity of epiphyte communities is highly dynamic and frequently available to intercept precipitation. Globally, non-vascular epiphytes spend <20% of their time near saturation and regionally, including the humid tropics, model results found that non-vascular epiphytes spend similar to 1/3 of their time in the dry state (0-10% of water storage capacity). Even data from Costa Rican cloud forest sites found the epiphyte community was saturated only 1/3 of the time and that internal leaf water storage was temporally dynamic enough to aid in precipitation interception. Analysis of the epi-soils associated with epiphytes further revealed the extent to which the epiphyte bucket emptied-as even the canopy soils were often <50% saturated (29-53% of all days observed). Results clearly show that the epiphyte bucket is more dynamic than currently assumed, meriting further research on epiphyte roles in precipitation interception, redistribution to the surface and chemical composition of "net" precipitation waters reaching the surface. KW - precipitation KW - interception KW - bromeliad KW - vascular epiphyte KW - non-vascular epiphyte KW - lichens KW - bryophytes KW - water storage capacity Y1 - 2019 U6 - https://doi.org/10.3390/geosciences9080342 SN - 2076-3263 VL - 9 IS - 8 PB - MDPI CY - Basel ER - TY - JOUR A1 - Baldermann, Susanne A1 - Blagojevic, Lara A1 - Frede, Katja A1 - Klopsch, R. A1 - Neugart, Susanne A1 - Neumann, A. A1 - Ngwene, Benard A1 - Norkeweit, Jessica A1 - Schroeter, D. A1 - Schroeter, A. A1 - Schweigert, Florian J. A1 - Wiesner, M. A1 - Schreiner, Monika T1 - Are Neglected Plants the Food for the Future? JF - Critical reviews in plant sciences N2 - Malnutrition, poor health, hunger, and even starvation are still the world's greatest challenges. Malnutrition is defined as deficiency of nutrition due to not ingesting the proper amounts of nutrients by simply not eating enough food and/or by consuming nutrient-poor food in respect to the daily nutritional requirements. Moreover, malnutrition and disease are closely associated and incidences of such diet-related diseases increase particularly in low- and middle-income states. While foods of animal origin are often unaffordable to low-income families, various neglected crops can offer an alternative source of micronutrients, vitamins, as well as health-promoting secondary plant metabolites. Therefore, agricultural and horticultural research should develop strategies not only to produce more food, but also to improve access to more nutritious food. In this context, one promising approach is to promote biodiversity in the dietary pattern of low-income people by getting access to nutritional as well as affordable food and providing recommendations for food selection and preparation. Worldwide, a multitude of various plant species are assigned to be consumed as grains, vegetables, and fruits, but only a limited number of these species are used as commercial cash crops. Consequently, numerous neglected and underutilized species offer the potential to diversify not only the human diet, but also increase food production levels, and, thus, enable more sustainable and resilient agro- and horti-food systems. To exploit the potential of neglected plant (NP) species, coordinated approaches on the local, regional, and international level have to be integrated that consequently demand the involvement of numerous multi-stakeholders. Thus, the objective of the present review is to evaluate whether NP species are important as “Future Food” for improving the nutritional status of humans as well as increasing resilience of agro- and horti-food systems. KW - Fruits KW - malnutrition KW - orphan crops KW - underutilized species KW - vegetables Y1 - 2016 U6 - https://doi.org/10.1080/07352689.2016.1201399 SN - 0735-2689 SN - 1549-7836 VL - 35 SP - 106 EP - 119 PB - Institut d'Estudis Catalans CY - Philadelphia ER - TY - JOUR A1 - Bell, Elanor M. A1 - Vincent, Amanda C. J. T1 - Art.: Gasterosteiform Y1 - 2002 ER - TY - JOUR A1 - Hartmann, Tobias A1 - Schwanhold, Nadine A1 - Leimkühler, Silke T1 - Assembly and catalysis of molybdenum or tungsten-containing formate dehydrogenases from bacteria JF - Biochimica et biophysica acta : Proteins and proteomics N2 - The global carbon cycle depends on the biological transformations of C-1 compounds, which include the reductive incorporation of CO2 into organic molecules (e.g. in photosynthesis and other autotrophic pathways), in addition to the production of CO2 from formate, a reaction that is catalyzed by formate dehydrogenases (FDHs). FDHs catalyze, in general, the oxidation of formate to CO2 and H+. However, selected enzymes were identified to act as CO2 reductases, which are able to reduce CO2 to formate under physiological conditions. This reaction is of interest for the generation of formate as a convenient storage form of H-2 for future applications. Cofactor-containing FDHs are found in anaerobic bacteria and archaea, in addition to facultative anaerobic or aerobic bacteria. These enzymes are highly diverse and employ different cofactors such as the molybdenum cofactor (Moco), FeS clusters and flavins, or cytochromes. Some enzymes include tungsten (W) in place of molybdenum (Mo) at the active site. For catalytic activity, a selenocysteine (SeCys) or cysteine (Cys) ligand at the Mo atom in the active site is essential for the reaction. This review will focus on the characterization of Mo- and W-containing FDHs from bacteria, their active site structure, subunit compositions and its proposed catalytic mechanism. We will give an overview on the different mechanisms of substrate conversion available so far, in addition to providing an outlook on bio-applications of FDHs. This article is part of a Special Issue entitled: Cofactor-dependent proteins: evolution, chemical diversity and bio-applications. (C) 2014 Elsevier B.V. All rights reserved. KW - Molybdenum cofactor KW - L-Cysteine desulfurase KW - Formate dehydrogenase KW - Chaperone KW - Bis-MGD Y1 - 2015 U6 - https://doi.org/10.1016/j.bbapap.2014.12.006 SN - 1570-9639 SN - 0006-3002 VL - 1854 IS - 9 SP - 1090 EP - 1100 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - König, Jeannette A1 - Grune, Tilman A1 - Ott, Christiane T1 - Assessing autophagy in murine skeletal muscle: current findings to modulate and quantify the autophagic flux JF - Current opinion in clinical nutrition and metabolic care N2 - Purpose of review In addition to the currently available lysosomotropic drugs and autophagy whole-body knockout mouse models, we provide alternative methods that enable the modulation and detection of autophagic flux in vivo, discussing advantages and disadvantages of each method. Recent findings With the autophagosome-lysosome fusion inhibitor colchicine in skeletal muscle and temporal downregulation of autophagy using a novel Autophagy related 5-short hairpin RNA (Atg5-shRNA) mouse model we mention two models that directly modulate autophagy flux in vivo. Furthermore, methods to quantify autophagy flux, such as mitophagy transgenic reporters, in situ immunofluorescent staining and multispectral imaging flow cytometry, in mature skeletal muscle and cells are addressed. To achieve clinical benefit, less toxic, temporary and cell-type-specific modulation of autophagy should be pursued further. A temporary knockdown as described for the Atg5-shRNA mice could provide a first insight into possible implications of autophagy inhibition. However, it is also important to take a closer look into the methods to evaluate autophagy after harvesting the tissue. In particular caution is required when experimental conditions can influence the final measurement and this should be pretested carefully. KW - autophagy flux KW - in vivo KW - skeletal muscle Y1 - 2019 U6 - https://doi.org/10.1097/MCO.0000000000000579 SN - 1363-1950 SN - 1473-6519 VL - 22 IS - 5 SP - 355 EP - 362 PB - Lippincott Williams & Wilkins CY - Philadelphia ER - TY - JOUR A1 - Schinkoeth, Michaela A1 - Antoniewicz, Franziska T1 - Automatic Evaluations and Exercising: Systematic Review and Implications for Future Research JF - Frontiers in psychology N2 - The general purpose of this systematic review was to summarize, structure and evaluate the findings on automatic evaluations of exercising. Studies were eligible for inclusion if they reported measuring automatic evaluations of exercising with an implicit measure and assessed some kind of exercise variable. Fourteen nonexperimental and six experimental studies (out of a total N = 1,928) were identified and rated by two independent reviewers. The main study characteristics were extracted and the grade of evidence for each study evaluated. First, results revealed a large heterogeneity in the applied measures to assess automatic evaluations of exercising and the exercise variables. Generally, small to large-sized significant relations between automatic evaluations of exercising and exercise variables were identified in the vast majority of studies. The review offers a systematization of the various examined exercise variables and prompts to differentiate more carefully between actually observed exercise behavior (proximal exercise indicator) and associated physiological or psychological variables (distal exercise indicator). Second, a lack of transparent reported reflections on the differing theoretical basis leading to the use of specific implicit measures was observed. Implicit measures should be applied purposefully, taking into consideration the individual advantages or disadvantages of the measures. Third, 12 studies were rated as providing first-grade evidence (lowest grade of evidence), five represent second-grade and three were rated as third-grade evidence. There is a dramatic lack of experimental studies, which are essential for illustrating the cause-effect relation between automatic evaluations of exercising and exercise and investigating under which conditions automatic evaluations of exercising influence behavior. Conclusions about the necessity of exercise interventions targeted at the alteration of automatic evaluations of exercising should therefore not be drawn too hastily. KW - automatic evaluation KW - exercise KW - associative KW - dual-process KW - implicitattitude KW - affective Y1 - 2017 U6 - https://doi.org/10.3389/fpsyg.2017.02103 SN - 1664-1078 VL - 8 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Marce, Rafael A1 - George, Glen A1 - Buscarinu, Paola A1 - Deidda, Melania A1 - Dunalska, Julita A1 - de Eyto, Elvira A1 - Flaim, Giovanna A1 - Grossart, Hans-Peter A1 - Istvanovics, Vera A1 - Lenhardt, Mirjana A1 - Moreno-Ostos, Enrique A1 - Obrador, Biel A1 - Ostrovsky, Ilia A1 - Pierson, Donald C. A1 - Potuzak, Jan A1 - Poikane, Sandra A1 - Rinke, Karsten A1 - Rodriguez-Mozaz, Sara A1 - Staehr, Peter A. A1 - Sumberova, Katerina A1 - Waajen, Guido A1 - Weyhenmeyer, Gesa A. A1 - Weathers, Kathleen C. A1 - Zion, Mark A1 - Ibelings, Bas W. A1 - Jennings, Eleanor T1 - Automatic High Frequency Monitoring for Improved Lake and Reservoir Management JF - Frontiers in plant science N2 - Recent technological developments have increased the number of variables being monitored in lakes and reservoirs using automatic high frequency monitoring (AHFM). However, design of AHFM systems and posterior data handling and interpretation are currently being developed on a site-by-site and issue-by-issue basis with minimal standardization of protocols or knowledge sharing. As a result, many deployments become short-lived or underutilized, and many new scientific developments that are potentially useful for water management and environmental legislation remain underexplored. This Critical Review bridges scientific uses of AHFM with their applications by providing an overview of the current AHFM capabilities, together with examples of successful applications. We review the use of AHFM for maximizing the provision of ecosystem services supplied, by lakes and reservoirs (consumptive and non consumptive uses, food production, and recreation), and for reporting lake status in the EU Water Framework Directive. We also highlight critical issues to enhance the application of AHFM, and suggest the establishment of appropriate networks to facilitate knowledge sharing and technological transfer between potential users. Finally, we give advice on how modern sensor technology can successfully be applied on a larger scale to the management of lakes and reservoirs and maximize the ecosystem services they provide. Y1 - 2016 U6 - https://doi.org/10.1021/acs.est.6b01604 SN - 0013-936X SN - 1520-5851 VL - 50 SP - 10780 EP - 10794 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Leimkühler, Silke A1 - Iobbi-Nivol, Chantal T1 - Bacterial molybdoenzymes: old enzymes for new purposes JF - FEMS microbiology reviews N2 - Molybdoenzymes are widespread in eukaryotic and prokaryotic organisms where they play crucial functions in detoxification reactions in the metabolism of humans and bacteria, in nitrate assimilation in plants and in anaerobic respiration in bacteria. To be fully active, these enzymes require complex molybdenum-containing cofactors, which are inserted into the apoenzymes after folding. For almost all the bacterial molybdoenzymes, molybdenum cofactor insertion requires the involvement of specific chaperones. In this review, an overview on the molybdenum cofactor biosynthetic pathway is given together with the role of specific chaperones dedicated for molybdenum cofactor insertion and maturation. Many bacteria are involved in geochemical cycles on earth and therefore have an environmental impact. The roles of molybdoenzymes in bioremediation and for environmental applications are presented.This review gives an overview of the diverse mechanisms leading to the insertion of the different forms of the molybdenum cofactor into the respective target enzymes and summarizes the roles of different molybdoenzymes in the environment.This review gives an overview of the diverse mechanisms leading to the insertion of the different forms of the molybdenum cofactor into the respective target enzymes and summarizes the roles of different molybdoenzymes in the environment. KW - molybdenum cofactor KW - specific chaperons KW - TorD family KW - XdhC KW - molybdoenzyme maturation KW - bioremediation Y1 - 2016 U6 - https://doi.org/10.1093/femsre/fuv043 SN - 0168-6445 SN - 1574-6976 VL - 40 SP - 1 EP - 18 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Speller, Camilla A1 - van den Hurk, Youri A1 - Charpentier, Anne A1 - Rodrigues, Ana A1 - Gardeisen, Armelle A1 - Wilkens, Barbara A1 - McGrath, Krista A1 - Rowsell, Keri A1 - Spindler, Luke A1 - Collins, Matthew J. A1 - Hofreiter, Michael T1 - Barcoding the largest animals on Earth: ongoing challenges and molecular solutions in the taxonomic identification of ancient cetaceans JF - Philosophical transactions of the Royal Society of London : B, Biological sciences KW - ancient DNA KW - archaeozoology KW - cetaceans KW - collagen peptide mass fingerprinting KW - species identification KW - zooarchaeology by mass spectrometry Y1 - 2016 U6 - https://doi.org/10.1098/rstb.2015.0332 SN - 0962-8436 SN - 1471-2970 VL - 371 PB - Royal Society CY - London ER - TY - JOUR A1 - Grözinger, Elvira T1 - Baskin J.R., Midrashic women : formations of the femine in Rabbinic literature; Hannover, Brandeis Univ. Press, 2002 BT - Midrashic women : formations of the femine in Rabbinic literature Y1 - 2004 ER - TY - JOUR A1 - Haßler, Gerda T1 - Beauzée, Nicolas (1717-1789) Y1 - 2006 SN - 0-08-044299-4 ER - TY - JOUR A1 - Hark, Sabine T1 - Beemyn, B. (Hrsg.), Creating a place for ourselves : lesbian, gay and bisexual community histories; New York, Routledge, 1997 BT - Creating a place for ourselves : lesbian, gay and bisexual community histories Y1 - 1998 ER - TY - JOUR A1 - Albrecht, Clemens T1 - Beik, W., Urban protest in seventeenth century France; Cambridge, Cambridge Univ. Press, 1997 BT - Urban protest in seventeenth century France Y1 - 1998 ER - TY - JOUR A1 - Gunnarsson, Logi T1 - Being a person and telling stories JF - Ethical theory and moral practice Y1 - 2012 U6 - https://doi.org/10.1007/s10677-012-9341-z SN - 1386-2820 VL - 15 IS - 4 SP - 581 EP - 583 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Haßler, Gerda ED - Brown, Keith T1 - Bello, Andrés (1781-1865) JF - Encyclopedia of Language and Linguistics T2 - 14-Volume Set Y1 - 2006 SN - 0-08-044299-4 PB - Elsevier CY - Burlington ET - 2nd ed. ER - TY - JOUR A1 - Haußig, Hans-Michael T1 - Ben-Yehuda, N., Theocratic democracy, the social construction of religious and secular extremism; Univ. Press, Oxford, 2010 BT - Theocratic democracy, the social construction of religious and secular extremism Y1 - 2013 SN - 1614-6492 ER -