TY - JOUR A1 - Walz, Bernd T1 - Überlebenskünstler aus dem Moospolster N2 - Populärwissenschaftlicher Aufsat Y1 - 1997 ER - TY - JOUR A1 - Jeltsch, Florian T1 - Ökologische Forschungen an der Unteren Havel BT - ein Ausblick JF - Brandenburgische Umwelt-Berichte : BUB ; Schriftenreihe der Mathematisch-Naturwissenschaftlichen Fakultät der Universität Potsdam Y1 - 2003 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-4100 SN - 1434-2375 SN - 1611-9339 VL - 13 SP - 138 EP - 139 ER - TY - JOUR A1 - Wallschläger, Hans-Dieter A1 - Beier, Wolfgang A1 - Burkart, Michael A1 - Mrzljak, Jadranka A1 - Oehlschläger, Susanne A1 - Wanner, Manfred T1 - Ökologische Datenerfassung für Naturschutzbewertung und Monitoring im Offenland Y1 - 2004 SN - 3-540-22449-1 ER - TY - JOUR A1 - Beier, Wolfgang A1 - Hinrichsen, A. A1 - Klatt, Reimund T1 - Ökofaunistische Untersuchungen auf ausgewählten Truppenübungsplätzen Brandenburgs BT - Laufkäfer (Carabidae), räuberische und parasitoide Wespen (Hymenoptera), Heuschrecken (Saltatoria) JF - Brandenburgische Umwelt-Berichte : BUB ; Schriftenreihe der Mathematisch-Naturwissenschaftlichen Fakultät der Universität Potsdam Y1 - 1997 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-2788 SN - 1434-2375 SN - 1611-9339 VL - 1 SP - 130 EP - 137 ER - TY - JOUR A1 - Kummer, Volker T1 - Zusammenstellung lokaler Pilzliteratur 2004 - 2008 Y1 - 2010 SN - 0232-4598 ER - TY - JOUR A1 - Kummer, Volker T1 - Zusammenstellung lokaler Pilzliteratur 2000 - 2003 Y1 - 2005 ER - TY - JOUR A1 - Kummer, Volker T1 - Zur Wasserpflanzenvegetation des Neuendorfer Sees Y1 - 1996 ER - TY - JOUR A1 - Fischer, Wolfgang A1 - Kummer, Volker T1 - Zur Verbreitung und Soziologie von S colochloa festucacea L : in Nordostdeutschland und seine Unterscheidung von ähnlichen Gräsern nach vegetativen Merkmalen Y1 - 1994 ER - TY - JOUR A1 - Seitz, Birgit A1 - Ristow, Michael A1 - Klemm, Gunther A1 - Rätzel, Stefan A1 - Schulze, Gerhart A1 - Hoffmann, Maik T1 - Zur Verbreitung der Wildrosen und verwilderten Kulturrosen in Berlin und Brandenburg Y1 - 2004 SN - 0724-3111 - ER - TY - JOUR A1 - Fischer, Wolfgang A1 - Kummer, Volker A1 - Pötsch, Joachim T1 - Zur Vegetation des Feuchtgebietes Internationaler Bedeutung (FIB) Untere Havel Y1 - 1994 ER - TY - JOUR A1 - Knösche, Rüdiger A1 - Bukowsky, Heinz T1 - Zur Schwermetallakkumulation in Dactylis glomerata auf Rieselfeldböden Y1 - 1996 SN - 3-7983-1680-5 ER - TY - JOUR A1 - Kummer, Volker T1 - Zur Pilzflora des Kienbergs bei Wolsier mit Hinweisen auf die Phanerogamenflora Y1 - 1996 ER - TY - JOUR A1 - Knösche, Ralf T1 - Zur Phospatrücklösung aus Augewässersedimenten unter veränderter Hochwasserdynamik JF - Brandenburgische Umwelt-Berichte : BUB ; Schriftenreihe der Mathematisch-Naturwissenschaftlichen Fakultät der Universität Potsdam Y1 - 2003 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-4077 SN - 1434-2375 SN - 1611-9339 VL - 13 SP - 102 EP - 113 ER - TY - JOUR A1 - Baumann, Guido A1 - Eckermann, Nora A1 - Meinel, Thomas T1 - Zur Kohlenstoffassimilation in grünen Zuckerrüben-Kalluskulturen Y1 - 1994 ER - TY - JOUR A1 - Ristow, Michael A1 - Seitz, Birgit T1 - Zur Kenntnis einiger übersehener, wenig beachteter oder verkannter Sippen der Gattungen Vicia und Valerianella in Brandenburg Y1 - 2002 ER - TY - JOUR A1 - Scheffler, Ingo T1 - Zur Fähigkeit von Ektoparasiten der Fledermäuse ihre Wirte aktiv aufzusuchen N2 - Active host-searching in bat ectoparasites. As a pilot study, this paper discribes the mobility of ectoparasites after removing from their hosts. Spinturnix acuminatus (Koch, 1836)(Acari, Spinturnicidae) a permanent stationary bat mite normally survives the removing only a few hours. This species moves easily on the patagium or on human skin. In contrast, on other surfaces the movements of this species seems to be less orientated and it is unlikely that the mite can reach a host in some distance. Nycteribia kolenatii Theodor & Moscona, 1954 (Diptera: Nycteribiidae) a bat fly, shows excellent movements in the fur of its host. The specimens survive the removing from the host several days. The ability to clamber up a wall was tested with a rough clay brick. The bat fly achieves only 9,6 cm on average. This result does not support good abilities for host searching in this species. Bat fleas (Siphonaptera: Ischnopsyllidae): Ischnopsyllus elongatus (Curtis, 1832), I. hexactenus (Kolenati, 1856), I. simplex (Rothschild, 1906)and other species survive the removing from their hosts several days. In case of a vertical barrier they showed a stereotype upside climbing, followed by a horizontal appetitive behavior. The fleas were climbing a distance in the upside of 6,45 m on average(1,2-21,68 m). As excellent climbers bat fleas are able to overcome edges and slopes and to crawl on the ceiling. Therefore, it seems to be no problem for a flea to parasite any bat in a resting room. Additionally, some bugs (Cimex lectularius Linnaeus, 1758) were examinated. They run with a speed of 63 cm per minute and were able to climb easily on the brick. On average their stretch of way achieved 2,85 m in ten minutes. Y1 - 2008 ER - TY - JOUR A1 - Gläser, Hans-Joachim A1 - Schönfelder, J. T1 - Zur Faunistik, Biologie und Ökologie der Wasserflöhe (Crustacea, Cladocera) der Havelaue - ein Beitrag für einen ökosystemaren Restaurationsansatz Y1 - 1994 ER - TY - JOUR A1 - Bergstedt, Christel T1 - Zur Erarbeitung von Aufgabenstellungen im Fach Biologie auf der Grundlage des Rahmenplans Y1 - 1999 ER - TY - JOUR A1 - Lindecke, Oliver A1 - Scheffler, Ingo T1 - Zur Ektoparasitenfauna der Fledermäuse in Sachsen Anhalt : Ectoparasites of bats in Saxony-Anhalt N2 - During the summer 2010 several mist nettings for the monitoring of bat species were performed in Saxony-Anhalt. Captured individuals were tested for ectoparasitic infestation. The aim was to update the fauna of ectoparasites of this state and to collect data on the distribution of individual species. Regarding this, results of previous surveys are summarised. In the present study nine out of thirteen bat species were found to be infested with a total of one flea species, one species of bat flies and eight species of mites. The infestation with fleas was below the expectations. Six spinturnicid mite species out of those occurring in Germany could be ascertained for Saxony-Anhalt. These are Spinturnix acuminatus (Koch, 1836), S. andegavinus (Kolenati, 1857), S. helvetiae Deunff, Keller & Aellen, 1986, S. mystacinus (Kolenati, 1857), S. plecotinus (Koch, 1839) and S. puncata (Sundevall, 1833). Details about the infestation with parasites (abundances) of the respective bat species are presented. Further information on the biology of spinturnicid mites are given and infestation characteristics are compared with those of other surveys. Keywords: ectoparasites, bats, Chiroptera, gamasine mite, Acari, Spinturnix, Ischnopsyllidae, Nycteribiidae, Saxony-Anhalt, Germany Y1 - 2011 SN - 0018-0637 ER - TY - JOUR A1 - Scheffler, Ingo A1 - Hiller, Andre T1 - Zur Ektoparasitenfauna der Fledermäuse in Niedersachsen : Neue Funde am Iberg bei Bad Grund N2 - Bei einer aktuellen Studie am Iberg in Bad Grund konnten im September 2010 acht Fledermausarten parasitologisch untersucht werden. Die Faenge ergaben Nachweise von 11 Ektoparasitenarten (Fledermausfliegen, Floehe, Flughaut- und Ohrmilben), wobei einige davon Erstfunde fuer Niedersachsen sind. Aus den Fundangaben wurden Parasitenspektren fuer die einzelnen Wirtsarten erstellt und durch weitere unveroeffentlichte Meldungen ergaenzt. Fuer den Vergleich von Ektoparasitenspektren verschiedener Wirtsarten erfolgte die Einfuehrung einer Formel, die die Berechnung einer allgemeinen "Parasitenlast" ermoeglicht. Die Betrachtung der Verteilung von Ektoparasiten auf Individuen zeigte eine starke Trennung verschiedener Parasitengruppen, ein synchrones Vorkommen wurde nur selten registriert. Moeglicherweise ist die Konkurrenz zwischen Ektoparasitenarten ein bisher unterschaetzter determinierender Faktor fuer die Praesenz auf einem Wirt. Y1 - 2010 ER - TY - JOUR A1 - Fischer, Petra A1 - Heinken, Thilo A1 - Meyer, Peter A1 - Schmidt, Marcus A1 - Waesch, Gunnar T1 - Zur Abgrenzung und Situation des FFH-Lebensraumtyps "Mitteleuropäische Flechten-Kiefernwälder" (91TO) in Deutschland N2 - Die in Deutschland gegenwärtig durch Nährstoffeinträge und ausbleibenden Nährstoffentzug stark im Rückgang begriffenen Flechten-Kiefernwälder werden als Biotoptyp wie auch als Lebensraumtyp "Mitteleuropäische Flechten-Kiefernwälder" (Code 91T0) diskutiert. Die bisherige, sehr uneinheitliche Differenzierung von Flechten-Kiefernwäldern auf der Ebene von Biotoptypen wird dargestellt. Auf der Grundlage neuerer vegetationskundlicher übersichten werden Vorschläge für eine einheitliche Abgrenzung des Biotoptyps "Flechten-Kiefernwald" und des Lebensraumtyps 91T0 unterbreitet. Im niedersächsischen Naturwaldreservat "Kaarßer Sandberge" (Niedersachsen) wurde die Anwendung des Konzeptes erfolgreich erprobt. Nicht nur hier, sondern auch deutschlandweit wird der Rückgang der Erdflechten in den Kieferwäldern zugunsten von Drahtschmiele und/ oder pleurokarpen Moosen deutlich. Nach der derzeitigen Definition des Lebensraumtyps 91T0 besteht auf der Grundlage der FFH-Richtlinie nicht für alle Flechten-Kiefernwälder eine Chance der Verbesserung. Der Ausschluss von außerhalb des natürlichen Verbreitungsgebietes der Wald-Kiefer gelegenen sowie von durch Aufforstung angepflanzten Beständen bringt Probleme mit sich, die diskutiert werden. Für den Erhalt und die Wiederherstellung der größtenteils nutzungsbedingt entstandenen Flechten-Kiefernwälder sind praktikable Pflegemaßnahmen notwendig, die im Rahmen von Streunutzungsversuchen erprobt werden müssen. Y1 - 2009 SN - 0028-0615 ER - TY - JOUR A1 - Kummer, Volker T1 - Zum Vorkommen von Asplenium viride HUDS : in Berlin und Brandenburg Y1 - 1996 ER - TY - JOUR A1 - Kummer, Volker T1 - Zum Vorkommen im Cetraria islandica (.L) ACH., dem isländischen Moos, und Cetraria ericetorium OPIZ in Brandenburg unter besonderer Berücksichtigung der Niederlausitz Y1 - 1998 ER - TY - JOUR A1 - Kummer, Volker T1 - Zum Vorkommen des Sternstäublings (Mycenastrum corium) in der Niederlausitz Y1 - 1993 ER - TY - JOUR A1 - Ristow, Michael A1 - Burkart, Michael A1 - Prasse, Rüdiger T1 - Zum Vorkommen der Bleichen Hainsimse, Luzula pallidula Kirschner (syn. L. pallescens auct.) in Brandenburg Y1 - 1997 ER - TY - JOUR A1 - Lohmann, Dirk A1 - Guo, Tong A1 - Tietjen, Britta T1 - Zooming in on coarse plant functional types-simulated response of savanna vegetation composition in response to aridity and grazing JF - Theoretical ecology N2 - Precipitation and land use in terms of livestock grazing have been identified as two of the most important drivers structuring the vegetation composition of semi-arid and arid savannas. Savanna research on the impact of these drivers has widely applied the so-called plant functional type (PFT) approach, grouping the vegetation into two or three broad types (here called meta-PFTs): woody plants and grasses, which are sometimes divided into perennial and annual grasses. However, little is known about the response of functional traits within these coarse types towards water availability or livestock grazing. In this study, we extended an existing eco-hydrological savanna vegetation model to capture trait diversity within the three broad meta-PFTs to assess the effects of both grazing and mean annual precipitation (MAP) on trait composition along a gradient of both drivers. Our results show a complex pattern of trait responses to grazing and aridity. The response differs for the three meta-PFTs. From our findings, we derive that trait responses to grazing and aridity for perennial grasses are similar, as suggested by the convergence model for grazing and aridity. However, we also see that this only holds for simulations below a MAP of 500 mm. This combined with the finding that trait response differs between the three meta-PFTs leads to the conclusion that there is no single, universal trait or set of traits determining the response to grazing and aridity. We finally discuss how simulation models including trait variability within meta-PFTs are necessary to understand ecosystem responses to environmental drivers, both locally and globally and how this perspective will help to extend conceptual frameworks of other ecosystems to savanna research. KW - Traits KW - Dryland KW - Degradation KW - Shrub encroachment KW - Simulation KW - Eco-hydrological model KW - EcoHyD Y1 - 2018 U6 - https://doi.org/10.1007/s12080-017-0356-x SN - 1874-1738 SN - 1874-1746 VL - 11 IS - 2 SP - 161 EP - 173 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Bauer, Christian G. A1 - Eremenko, A. V. A1 - Ehrentreich-Förster, Eva A1 - Bier, Frank Fabian A1 - Makower, Alexander A1 - Halsall, H. B. A1 - Heineman, W. R. A1 - Scheller, Frieder W. T1 - Zeptomole-detecting biosensor for alkaline phosphatase in an electroche mical immunoassay for 2,4- dichlorophenoacetic acid Y1 - 1996 ER - TY - JOUR A1 - Grönke, Ottokar A1 - Klepel, Gert T1 - Zelle, Einzeller, Vielzeller Y1 - 2000 SN - 3-06-010768-8 ER - TY - JOUR A1 - Cui, Xiao A1 - Lv, Yang A1 - Chen, Miaolin A1 - Nikoloski, Zoran A1 - Twell, David A1 - Zhang, Dabing T1 - Young Genes out of the Male: An Insight from Evolutionary Age Analysis of the Pollen Transcriptome JF - Molecular plant N2 - The birth of new genes in genomes is an important evolutionary event. Several studies reveal that new genes in animals tend to be preferentially expressed in male reproductive tissues such as testis (Betran et al., 2002; Begun et al., 2007; Dubruille et al., 2012), and thus an "out of testis' hypothesis for the emergence of new genes has been proposed (Vinckenbosch et al., 2006; Kaessmann, 2010). However, such phenomena have not been examined in plant species. Here, by employing a phylostratigraphic method, we dated the origin of protein-coding genes in rice and Arabidopsis thaliana and observed a number of young genes in both species. These young genes tend to encode short extracellular proteins, which may be involved in rapid evolving processes, such as reproductive barriers, species specification, and antimicrobial processes. Further analysis of transcriptome age indexes across different tissues revealed that male reproductive cells express a phylogenetically younger transcriptome than other plant tissues. Compared with sporophytic tissues, the young transcriptomes of the male gametophyte displayed greater complexity and diversity, which included a higher ratio of anti-sense and inter-genic transcripts, reflecting a pervasive transcription state that facilitated the emergence of new genes. Here, we propose that pollen may act as an "innovation incubator' for the birth of de novo genes. With cases of male-biased expression of young genes reported in animals, the "new genes out of the male' model revealed a common evolutionary force that drives reproductive barriers, species specification, and the upgrading of defensive mechanisms against pathogens. KW - pollen KW - evolution KW - young genes KW - transcriptome Y1 - 2015 U6 - https://doi.org/10.1016/j.molp.2014.12.008 SN - 1674-2052 SN - 1752-9867 VL - 8 IS - 6 SP - 935 EP - 945 PB - Cell Press CY - Cambridge ER - TY - JOUR A1 - Mirhaj, M. A1 - Boit, Alice A1 - Razzak, M. A. A1 - Wahab, M. A. T1 - Yield performance comparison between cultures of rice cum prawn (Macrobrachium rosenbergii) and rice cum fish (Cyprinus carpio, Oreochromis niloticus) in North-Eastern Bangladesh JF - Aquaculture : an international journal devoted to research on the exploration and improvement of all aquatic food resources, both floristic and faunistic, from freshwater, brackish and marine environment, related directly or indirectly to human consumption N2 - Integrated and concurrent cultures in rice fields are a promising approach to sustainable farming as the demand for aquacultural and agricultural products continues to grow while land and water resources become increasingly scarce. Prawn farming mainly takes place in coastal regions in improved extensive to semi-intensive aquacultures but a trend to shift the industry to inland regions has been noticed. This inland study in Northern Bangladesh used different input regimes such as fertilizer and additional feed to compare the performance of prawn and fish in flooded paddy fields in regard to water quality measurements. Maximal net yields and body weight gain with minimized negative impact on water quality were found when initial body weights of prawn were optimized. Regarding yield factors in reference to the reduction of costs due to the avoidance of expensive fertilizer/feed and effort, prawn performed better than integrated fish cultures considering a higher market value of prawn with net yields of up to 97 +/- 55 kg ha(-1) for unfed and 151 +/- 61 kg ha(-1) for fed treatments. Rice yields of up to 4.7 +/- 0.1 t ha(-1) for unfed and 4.4 +/- 0.1 t ha(-1) were achieved for fed treatments. The findings suggest that for small scale farmers, prawn cum rice cultures are an economically profitable and comparatively easily manageable alternative to rice cum fish cultures. KW - Rice cum prawn culture KW - Macrobrachium rosenbergii KW - Sustainable aquaculture KW - Polyculture Y1 - 2013 U6 - https://doi.org/10.1016/j.aquaculture.2013.01.038 SN - 0044-8486 VL - 392 IS - 5 SP - 26 EP - 33 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Lilie, Hauke A1 - Baer, Dorit A1 - Kettner, Karina A1 - Weininger, Ulrich A1 - Balbach, Jochen A1 - Naumann, Manfred A1 - Mueller, Eva-Christina A1 - Otto, Albrecht A1 - Gast, Klaus A1 - Golbik, Ralph A1 - Kriegel, Thomas T1 - Yeast hexokinase isoenzyme ScHxk2 stability of a two-domain protein with discontinuous domains JF - Protein engineering design & selection N2 - The hexokinase isoenzyme 2 of Saccharomyces cerevisiae (ScHxk2) represents an archetype of a two-domain protein with the active site located in a cleft between the two domains. Binding of the substrate glucose results in a rigid body movement of the two domains leading to a cleft closure of the active site. Both domains of this enzyme are composed of discontinuous peptide sequences. This structural feature is reflected in the stability and folding of the ScHxk2 protein. Structural transitions induced by urea treatment resulted in the population of a thermodynamically stable folding intermediate, which, however, does not correspond to a molecule with one domain folded and the other unfolded. As demonstrated by different spectroscopic techniques, both domains are structurally affected by the partial denaturation. The intermediate possesses only 40% of the native secondary structural content and a substantial increase in the Stokes radius as judged by circular dichroism and dynamic light scattering analyses. One-dimensional H-1 NMR data prove that all tryptophan residues are in a non-native environment in the intermediate, indicating substantial changes in the tertiary structure. Still, the intermediate possesses quite a high stability for a transition intermediate of about Delta G = -22 kJ mol(-1). KW - dynamic light scattering KW - NMR KW - ScHxk2 KW - stability KW - transition intermediate Y1 - 2011 U6 - https://doi.org/10.1093/protein/gzq098 SN - 1741-0126 VL - 24 IS - 1-2 SP - 79 EP - 87 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Lilie, Hauke A1 - Bär, Dorit A1 - Kettner, Karina A1 - Weininger, Ulrich A1 - Balbach, Jochen A1 - Naumann, Manfred A1 - Müller, Eva-Christina A1 - Otto, Albrecht A1 - Gast, Klaus A1 - Golbik, Ralph T1 - Yeast hexokinase isoenzyme ScHxk2 : stability of a two-domain protein with discontinuous domains N2 - The hexokinase isoenzyme 2 of Saccharomyces cerevisiae (ScHxk2) represents an archetype of a two-domain protein with the active site located in a cleft between the two domains. Binding of the substrate glucose results in a rigid body movement of the two domains leading to a cleft closure of the active site. Both domains of this enzyme are composed of discontinuous peptide sequences. This structural feature is reflected in the stability and folding of the ScHxk2 protein. Structural transitions induced by urea treatment resulted in the population of a thermodynamically stable folding intermediate, which, however, does not correspond to a molecule with one domain folded and the other unfolded. As demonstrated by different spectroscopic techniques, both domains are structurally affected by the partial denaturation. The intermediate possesses only 40% of the native secondary structural content and a substantial increase in the Stokes radius as judged by circular dichroism and dynamic light scattering analyses. One-dimensional 1H NMR data prove that all tryptophan residues are in a non-native environment in the intermediate, indicating substantial changes in the tertiary structure. Still, the intermediate possesses quite a high stability for a transition intermediate of about ;G = ;22 kJ mol;1. Y1 - 2011 UR - http://peds.oxfordjournals.org/content/24/1-2/79.long SN - 0269-2139 ER - TY - JOUR A1 - Albrecht, Tanja A1 - Haebel, Sophie A1 - Koch, Anke A1 - Krause, Ulrike A1 - Eckermann, Nora A1 - Steup, Martin T1 - Yeast glycogenin (Glg2p) produced in Escherichia coli is simultaneously glucosylated at two vicinal tyrosin residues but results in a reduced bacterial glycogen accumulation N2 - Saccharomyces cerevisiae possesses two glycogenin isoforms (designated as Glg1p and Glg2p) that both contain a conserved tyrosine residue, Tyr232. However, Glg2p possesses an additional tyrosine residue, Tyr230 and therefore two potential autoglucosylation sites. Glucosylation of Glg2p was studied using both matrix-assisted laser desorption ionization and electrospray quadrupole time of flight mass spectrometry. Glg2p, carrying a C-terminal (His(6)) tag, was produced in Escherichia coli and purified. By tryptic digestion and reversed phase chromatography a peptide (residues 219-246 of the complete Glg2p sequence) was isolated that contained 4-25 glucosyl residues. Following incubation of Glg2p with UDPglucose, more than 36 glucosyl residues were covalently bound to this peptide. Using a combination of cyanogen bromide cleavage of the protein backbone, enzymatic hydrolysis of glycosidic bonds and reversed phase chromatography, mono- and diglucosylated peptides having the sequence PNYGYQSSPAM were generated. MS/MS spectra revealed that glucosyl residues were attached to both Tyr232 and Tyr230 within the same peptide. The formation of the highly glucosylated eukaryotic Glg2p did not favour the bacterial glycogen accumulation. Under various experimental conditions Glg2p-producing cells accumulated approximately 30% less glycogen than a control transformed with a Glg2p lacking plasmid. The size distribution of the glycogen and extractable activities of several glycogen-related enzymes were essentially unchanged. As revealed by high performance anion exchange chromatography, the intracellular maltooligosaccharide pattern of the bacterial cells expressing the functional eukaryotic transgene was significantly altered. Thus, the eukaryotic glycogenin appears to be incompatible with the bacterial initiation of glycogen biosynthesis Y1 - 2004 ER - TY - JOUR A1 - Redelberger, David A1 - Seduk, Farida A1 - Genest, Olivier A1 - Mejean, Vincent A1 - Leimkühler, Silke A1 - Iobbi-Nivol, Chantal T1 - YcdY Protein of Escherichia coli, an Atypical Member of the TorD Chaperone Family JF - Journal of bacteriology N2 - The TorD family of specific chaperones is divided into four subfamilies dedicated to molybdoenzyme biogenesis and a fifth one, exemplified by YcdY of Escherichia coli, for which no defined partner has been identified so far. We propose that YcdY is the chaperone of YcdX, a zinc protein involved in the swarming motility process of E. coli, since YcdY interacts with YcdX and increases its activity in vitro. Y1 - 2011 U6 - https://doi.org/10.1128/JB.05927-11 SN - 0021-9193 VL - 193 IS - 23 SP - 6512 EP - 6516 PB - American Society for Microbiology CY - Washington ER - TY - JOUR A1 - Pacholsky, Dirk A1 - Vakeel, Padmanabhan A1 - Himmel, Mirko A1 - Lowe, T. A1 - Stradal, T. A1 - Rottner, K. A1 - Fürst, Dieter Oswald A1 - vanderVen, Peter F. M. T1 - Xin repeats define a novel actin-binding motif N2 - Xin is a protein that is expressed during early developmental stages of cardiac and skeletal muscles. Immunolocalization studies indicated a peripheral localization in embryonic mouse heart, where Xin localizes with beta- catenin and N-cadherin. In adult tissues, Xin is found primarily in the intercalated discs of cardiomyocytes and the myotendinous junctions of skeletal muscle cells, both specialized attachment sites of the myofibrillar ends to the sarcolemma. A large part of the Xin protein consists of unique 16 amino acid repeats with unknown function. We have investigated the characteristics of the Xin repeats by transfection experiments and actin-binding assays and ascertained that, upon expression in cultured cells, these repeats bind to and stabilize the actin-based cytoskeleton. In vitro co- sedimentation assays with skeletal muscle actin indicated that they not only directly bind actin filaments, but also have the capability of arranging microfilaments into networks that sediment upon low-speed centrifugation. Very similar repeats were also found in Xin-repeat protein 2' (XIRP2), a novel protein that seems to be expressed mainly in striated muscles. Human XIRP2 contains 28 Xin repeats with properties identical to those of Xin. We conclude that the Xin repeats define a novel, repetitive actin-binding motif present in at least two different muscle proteins. These Xin- repeat proteins therefore constitute the first two members of a novel family of actin-binding proteins Y1 - 2004 SN - 0021-9533 ER - TY - JOUR A1 - Kalimuthu, Palraj A1 - Leimkühler, Silke A1 - Bernhardt, Paul V. T1 - Xanthine dehydrogenase electrocatalysis autocatalysis and novel activity JF - The journal of physical chemistry : B, Condensed matter, materials, surfaces, interfaces & biophysical chemistry N2 - The enzyme xanthine dehydrogenase (XDH) from the purple photosynthetic bacterium Rhodobacter capsulatus catalyzes the oxidation of hypoxanthine to xanthine and xanthine to uric acid as part of purine metabolism. The native electron acceptor is NAD(+) but herein we show that uric acid in its 2-electron oxidized form is able to act as an artificial electron acceptor from XDH in an electrochemically driven catalytic system. Hypoxanthine oxidation is also observed with the novel production of uric acid in a series of two consecutive 2-electron oxidation reactions via xanthine. XDH exhibits native activity in terms of its pH optimum and inhibition by allopurinol. Y1 - 2011 U6 - https://doi.org/10.1021/jp111809f SN - 1520-6106 VL - 115 IS - 11 SP - 2655 EP - 2662 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Schubert, Dieter A1 - Schluckebier, Gerd A1 - Backmann, Jan A1 - Granzien, Joachim A1 - Kisker, Caroline A1 - Choe, Hui-Woog A1 - Hahn, Ulrich A1 - Pfeil, Wolfgang A1 - Saenger, Wolfram T1 - X-ray crystallographic and calorimetric studies of the effects of the mutation Trp59Tyr in ribonuclease T1 Y1 - 1994 ER - TY - JOUR A1 - Prat, Tomas A1 - Hajny, Jakub A1 - Grunewald, Wim A1 - Vasileva, Mina A1 - Molnar, Gergely A1 - Tejos, Ricardo A1 - Schmid, Markus A1 - Sauer, Michael A1 - Friml, Jiří T1 - WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity JF - PLoS Genetics : a peer-reviewed, open-access journal N2 - Auxin is unique among plant hormones due to its directional transport that is mediated by the polarly distributed PIN auxin transporters at the plasma membrane. The canalization hypothesis proposes that the auxin feedback on its polar flow is a crucial, plant-specific mechanism mediating multiple self-organizing developmental processes. Here, we used the auxin effect on the PIN polar localization in Arabidopsis thaliana roots as a proxy for the auxin feedback on the PIN polarity during canalization. We performed microarray experiments to find regulators of this process that act downstream of auxin. We identified genes that were transcriptionally regulated by auxin in an AXR3/IAA17-and ARF7/ARF19-dependent manner. Besides the known components of the PIN polarity, such as PID and PIP5K kinases, a number of potential new regulators were detected, among which the WRKY23 transcription factor, which was characterized in more detail. Gain-and loss-of-function mutants confirmed a role for WRKY23 in mediating the auxin effect on the PIN polarity. Accordingly, processes requiring auxin-mediated PIN polarity rearrangements, such as vascular tissue development during leaf venation, showed a higher WRKY23 expression and required the WRKY23 activity. Our results provide initial insights into the auxin transcriptional network acting upstream of PIN polarization and, potentially, canalization-mediated plant development. Y1 - 2018 U6 - https://doi.org/10.1371/journal.pgen.1007177 SN - 1553-7404 VL - 14 IS - 1 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Klingstrom, Tomas A1 - Soldatova, Larissa A1 - Stevens, Robert A1 - Roos, T. Erik A1 - Swertz, Morris A. A1 - Müller, Kristian M. A1 - Kalas, Matus A1 - Lambrix, Patrick A1 - Taussig, Michael J. A1 - Litton, Jan-Eric A1 - Landegren, Ulf A1 - Bongcam-Rudloff, Erik T1 - Workshop on laboratory protocol standards for the molecular methods database JF - New biotechnology N2 - Management of data to produce scientific knowledge is a key challenge for biological research in the 21st century. Emerging high-throughput technologies allow life science researchers to produce big data at speeds and in amounts that were unthinkable just a few years ago. This places high demands on all aspects of the workflow: from data capture (including the experimental constraints of the experiment), analysis and preservation, to peer-reviewed publication of results. Failure to recognise the issues at each level can lead to serious conflicts and mistakes; research may then be compromised as a result of the publication of non-coherent protocols, or the misinterpretation of published data. In this report, we present the results from a workshop that was organised to create an ontological data-modelling framework for Laboratory Protocol Standards for the Molecular Methods Database (MolMeth). The workshop provided a set of short- and long-term goals for the MolMeth database, the most important being the decision to use the established EXACT description of biomedical ontologies as a starting point. Y1 - 2013 U6 - https://doi.org/10.1016/j.nbt.2012.05.019 SN - 1871-6784 VL - 30 IS - 2 SP - 109 EP - 113 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Paraskevopoulou, Sofia A1 - Dennis, Alice B. A1 - Weithoff, Guntram A1 - Hartmann, Stefanie A1 - Tiedemann, Ralph T1 - Within species expressed genetic variability and gene expression response to different temperatures in the rotifer Brachionus calyciflorus sensu stricto JF - PLoS ONE N2 - Genetic divergence is impacted by many factors, including phylogenetic history, gene flow, genetic drift, and divergent selection. Rotifers are an important component of aquatic ecosystems, and genetic variation is essential to their ongoing adaptive diversification and local adaptation. In addition to coding sequence divergence, variation in gene expression may relate to variable heat tolerance, and can impose ecological barriers within species. Temperature plays a significant role in aquatic ecosystems by affecting species abundance, spatio-temporal distribution, and habitat colonization. Recently described (formerly cryptic) species of the Brachionus calyciflorus complex exhibit different temperature tolerance both in natural and in laboratory studies, and show that B. calyciflorus sensu stricto (s.s.) is a thermotolerant species. Even within B. calyciflorus s.s., there is a tendency for further temperature specializations. Comparison of expressed genes allows us to assess the impact of stressors on both expression and sequence divergence among disparate populations within a single species. Here, we have used RNA-seq to explore expressed genetic diversity in B. calyciflorus s.s. in two mitochondrial DNA lineages with different phylogenetic histories and differences in thermotolerance. We identify a suite of candidate genes that may underlie local adaptation, with a particular focus on the response to sustained high or low temperatures. We do not find adaptive divergence in established candidate genes for thermal adaptation. Rather, we detect divergent selection among our two lineages in genes related to metabolism (lipid metabolism, metabolism of xenobiotics). Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0223134 SN - 1932-6203 VL - 9 IS - 14 PB - PLoS ONE CY - San Francisco, California ER - TY - JOUR A1 - Raatz, Larissa T1 - Wirtschaften in einer reich strukturierten Landschaft - geht das ? JF - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018 Y1 - 2019 SP - 32 EP - 33 PB - oerding print GmbH CY - Braunschweig ER - TY - JOUR A1 - Pinyou, Piyanut A1 - Ruff, Adrian A1 - Poeller, Sascha A1 - Alsaoub, Sabine A1 - Leimkühler, Silke A1 - Wollenberger, Ursula A1 - Schuhmann, Wolfgang T1 - Wiring of the aldehyde oxidoreductase PaoABC to electrode surfaces via entrapment in low potential phenothiazine-modified redox polymers JF - Bioelectrochemistry : an international journal devoted to electrochemical aspects of biology and biological aspects of electrochemistry ; official journal of the Bioelectrochemical Society N2 - Phenothiazine-modified redox hydrogels were synthesized and used for the wiring of the aldehyde oxidoreductase PaoABC to electrode surfaces. The effects of the pH value and electrode surface modification on the biocatalytic activity of the layers were studied in the presence of vanillin as the substrate. The enzyme electrodes were successfully employed as bioanodes in vanillin/O-2 biofuel cells in combination with a high potential bilirubin oxidase biocathode. Open circuit voltages of around 700 mV could be obtained in a two compartment biofuel cell setup. Moreover, the use of a rather hydrophobic polymer with a high degree of crosslinking sites ensures the formation of stable polymer/enzyme films which were successfully used as bioanode in membrane-less biofuel cells. (C) 2015 Elsevier B.V. All rights reserved. KW - Aldehyde oxidoreductase KW - Enzyme electrode KW - Redox polymer KW - Phenothiazine KW - Biosensor KW - Biofuel cell Y1 - 2016 U6 - https://doi.org/10.1016/j.bioelechem.2015.12.005 SN - 1567-5394 SN - 1878-562X VL - 109 SP - 24 EP - 30 PB - Elsevier CY - Lausanne ER - TY - JOUR A1 - Rathgeber, Jörg T1 - Winterliche Beobachtungen an der Rohrdommel in Berlin Y1 - 1994 SN - 0028-1301 ER - TY - JOUR A1 - Voigt, Christian C. A1 - Kaiser, Klara A1 - Look, Samantha A1 - Scharnweber, Inga Kristin A1 - Scholz, Carolin T1 - Wind turbines without curtailment produce large numbers of bat fatalities throughout their lifetime BT - a call against ignorance and neglect JF - Global ecology and conservation N2 - Bats are protected by national and international legislation in European countries, yet many species, particularly migratory aerial insectivores, collide with wind turbines which counteracts conservation efforts. Within the European Union it is legally required to curtail the operation of wind turbines at periods of high bat activity, yet this is not practiced at old wind turbines. Based on data from the national carcass repository in Germany and from our own carcass searches at a wind park with three turbines west of Berlin, we evaluated the magnitude of bat casualties at old, potentially poor-sited wind turbines operating without curtailment. We report 88 documented bat carcasses collected by various searchers over the 20-year operation period of this wind park from 2001 to 2021. Common noctule bats (Nyctalus noctula) and common pipistrelles (Pipistrellus pipistrellus) were most often found dead at these turbines. Our search campaign in August and September 2021 yielded a total of 18 carcasses. We estimated that at least 209 bats were likely killed during our field survey, yielding more than 70 casualties/wind turbine or 39 casualties/ MW in two months. Since our campaign covered only part of the migration season, we consider this value as an underestimate. The 20-year period of the wind park emphasises the substantial impact old turbines may have on bat individuals and populations when operating without curtailments. We call for reconsidering the operation procedures of old wind turbines to stop the continuous loss of bats in Germany and other countries where turbine curtailments are even less practiced than in Germany. KW - green-green dilemma KW - wind energy bat conflict KW - wildlife casualties Y1 - 2022 U6 - https://doi.org/10.1016/j.gecco.2022.e02149 SN - 2351-9894 VL - 37 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Werger, Luise A1 - Bergmann, Joana A1 - Weber, Ewald A1 - Heinze, Johannes T1 - Wind intensity affects fine root morphological traits with consequences for plant-soil feedback effects JF - Annals of Botany Plants N2 - Wind influences the development, architecture and morphology of plant roots and may modify subsequent interactions between plants and soil (plant–soil feedbacks—PSFs). However, information on wind effects on fine root morphology is scarce and the extent to which wind changes plant–soil interactions remains unclear. Therefore, we investigated the effects of two wind intensity levels by manipulating surrounding vegetation height in a grassland PSF field experiment. We grew four common plant species (two grasses and two non-leguminous forbs) with soil biota either previously conditioned by these or other species and tested the effect of wind on root:shoot ratio, fine root morphological traits as well as the outcome for PSFs. Wind intensity did not affect biomass allocation (i.e. root:shoot ratio) in any species. However, fine-root morphology of all species changed under high wind intensity. High wind intensity increased specific root length and surface area and decreased root tissue density, especially in the two grasses. Similarly, the direction of PSFs changed under high wind intensity in all four species, but differences in biomass production on the different soils between high and low wind intensity were marginal and most pronounced when comparing grasses with forbs. Because soils did not differ in plant-available nor total nutrient content, the results suggest that wind-induced changes in root morphology have the potential to influence plant–soil interactions. Linking wind-induced changes in fine-root morphology to effects on PSF improves our understanding of plant–soil interactions under changing environmental conditions. KW - Wind KW - root traits KW - root morphology KW - specific root length KW - plant–soil feedback Y1 - 2020 U6 - https://doi.org/10.1093/aobpla/plaa050 SN - 2041-2851 VL - 12 IS - 5 PB - Oxford University Press CY - Oxford ER - TY - JOUR A1 - Busch, Verena A1 - Klaus, Valentin Helmut A1 - Schaefer, Deborah A1 - Prati, Daniel A1 - Boch, Steffen A1 - Müller, Jörg A1 - Chiste, Melanie A1 - Mody, Karsten A1 - Blüthgen, Nico A1 - Fischer, Markus A1 - Hölzel, Norbert A1 - Kleinebecker, Till T1 - Will I stay or will I go? Plant species-specific response and tolerance to high land-use intensity in temperate grassland ecosystems JF - Journal of vegetation science KW - community composition KW - ecological strategies KW - Ellenberg indicator values KW - land-use intensity niche KW - plant functional traits KW - species-specific niche breadth KW - species-specific niche optima KW - temperate grasslands KW - vegetation dynamics Y1 - 2019 U6 - https://doi.org/10.1111/jvs.12749 SN - 1100-9233 SN - 1654-1103 VL - 30 IS - 4 SP - 674 EP - 686 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Glückler, Ramesh A1 - Herzschuh, Ulrike A1 - Kruse, Stefan A1 - Andreev, Andrei A1 - Vyse, Stuart Andrew A1 - Winkler, Bettina A1 - Biskaborn, Boris A1 - Pestryakova, Luidmila Agafyevna A1 - Dietze, Elisabeth T1 - Wildfire history of the boreal forest of south-western Yakutia (Siberia) over the last two millennia documented by a lake-sediment charcoal record JF - Biogeosciences : BG / European Geosciences Union N2 - Wildfires, as a key disturbance in forest ecosystems, are shaping the world's boreal landscapes. Changes in fire regimes are closely linked to a wide array of environmental factors, such as vegetation composition, climate change, and human activity. Arctic and boreal regions and, in particular, Siberian boreal forests are experiencing rising air and ground temperatures with the subsequent degradation of permafrost soils leading to shifts in tree cover and species composition. Compared to the boreal zones of North America or Europe, little is known about how such environmental changes might influence long-term fire regimes in Russia. The larch-dominated eastern Siberian deciduous boreal forests differ markedly from the composition of other boreal forests, yet data about past fire regimes remain sparse. Here, we present a high-resolution macroscopic charcoal record from lacustrine sediments of Lake Khamra (southwest Yakutia, Siberia) spanning the last ca. 2200 years, including information about charcoal particle sizes and morphotypes. Our results reveal a phase of increased charcoal accumulation between 600 and 900 CE, indicative of relatively high amounts of burnt biomass and high fire frequencies. This is followed by an almost 900-year-long period of low charcoal accumulation without significant peaks likely corresponding to cooler climate conditions. After 1750 CE fire frequencies and the relative amount of biomass burnt start to increase again, coinciding with a warming climate and increased anthropogenic land development after Russian colonization. In the 20th century, total charcoal accumulation decreases again to very low levels despite higher fire frequency, potentially reflecting a change in fire management strategies and/or a shift of the fire regime towards more frequent but smaller fires. A similar pattern for different charcoal morphotypes and comparison to a pollen and non-pollen palynomorph (NPP) record from the same sediment core indicate that broad-scale changes in vegetation composition were probably not a major driver of recorded fire regime changes. Instead, the fire regime of the last two millennia at Lake Khamra seems to be controlled mainly by a combination of short-term climate variability and anthropogenic fire ignition and suppression. Y1 - 2021 U6 - https://doi.org/10.5194/bg-18-4185-2021 SN - 1726-4170 SN - 1726-4189 VL - 18 IS - 13 SP - 4185 EP - 4209 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Mrochen, Daniel M. A1 - Schulz, Daniel A1 - Fischer, Stefan A1 - Jeske, Kathrin A1 - El Gohary, Heba A1 - Reil, Daniela A1 - Imholt, Christian A1 - Truebe, Patricia A1 - Suchomel, Josef A1 - Tricaud, Emilie A1 - Jacob, Jens A1 - Heroldova, Marta A1 - Bröker, Barbara M. A1 - Strommenger, Birgit A1 - Walther, Birgit A1 - Ulrich, Rainer G. A1 - Holtfreter, Silva T1 - Wild rodents and shrews are natural hosts of Staphylococcus aureus JF - International Journal of Medical Microbiology N2 - Laboratory mice are the most commonly used animal model for Staphylococcus aureus infection studies. We have previously shown that laboratory mice from global vendors are frequently colonized with S. aureus. Laboratory mice originate from wild house mice. Hence, we investigated whether wild rodents, including house mice, as well as shrews are naturally colonized with S. aureus and whether S. aureus adapts to the wild animal host. 295 animals of ten different species were caught in different locations over four years (2012-2015) in Germany, France and the Czech Republic. 45 animals were positive for S. aureus (15.3%). Three animals were co-colonized with two different isolates, resulting in 48 S. aureus isolates in total. Positive animals were found in Germany and the Czech Republic in each studied year. The S. aureus isolates belonged to ten different spa types, which grouped into six lineages (clonal complex (CC) 49, CC88, CC130, CC1956, sequence type (ST) 890, ST3033). CC49 isolates were most abundant (17/48, 35.4%), followed by CC1956 (14/48, 29.2%) and ST890 (9/48, 18.8%). The wild animal isolates lacked certain properties that are common among human isolates, e.g., a phage-encoded immune evasion cluster, superantigen genes on mobile genetic elements and antibiotic resistance genes, which suggests long-term adaptation to the wild animal host. One CC130 isolate contained the mecC gene, implying wild rodents might be both reservoir and vector for methicillin-resistant. In conclusion, we demonstrated that wild rodents and shrews are naturally colonized with S. aureus, and that those S. aureus isolates show signs of host adaptation. KW - Staphylococcus aureus KW - Colonization KW - Wild mice KW - Host adaptation KW - Immune evasion cluster KW - mecC Y1 - 2018 U6 - https://doi.org/10.1016/j.ijmm.2017.09.014 SN - 1438-4221 SN - 1618-0607 VL - 308 IS - 6 SP - 590 EP - 597 PB - Elsevier CY - Jena ER - TY - JOUR A1 - Knösche, Rüdiger T1 - Wiederfund von Najas marina L. ssp. marina im Schollener See (Elbe-Havel-Winkel, Sachsen-Anhalt) Y1 - 2008 SN - 1432-8038 ER - TY - JOUR A1 - Greil, Holle T1 - Wie weit sind wir der DIN 33402 entwachsen? JF - Brandenburgische Umwelt-Berichte : BUB ; Schriftenreihe der Mathematisch-Naturwissenschaftlichen Fakultät der Universität Potsdam Y1 - 2001 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-3870 SN - 1434-2375 SN - 1611-9339 VL - 10 SP - 7 EP - 22 ER -