TY - JOUR A1 - Thiel, Kerstin A1 - Klamroth, Tillmann A1 - Strauch, Peter A1 - Taubert, Andreas T1 - On the interaction of ascorbic acid and the tetrachlorocuprate ion [CuCl4](2-) in CuCl nanoplatelet formation from an ionic liquid precursor (ILP) JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - The formation of CuCl nanoplatelets from the ionic liquid precursor (ILP) butylpyridinium tetrachlorocuprate [C4Py](2)[CuCl4] using ascorbic acid as a reducing agent was investigated. In particular, electron paramagnetic resonance (EPR) spectroscopy was used to evaluate the interaction between ascorbic acid and the Cu(II) ion before reduction to Cu(I). EPR spectroscopy suggests that the [CuCl4](2-) ion in the neat IL is a distorted tetrahedron, consistent with DFT calculations. Addition of ascorbic acid leads to the removal of one chloride from the [CuCl4](2-) anion, as shown by DFT and the loss of symmetry by EPR. DFT furthermore suggests that the most stable adduct is formed when only one hydroxyl group of the ascorbic acid coordinates to the Cu(II) ion. Y1 - 2011 U6 - https://doi.org/10.1039/c1cp20648f SN - 1463-9076 VL - 13 IS - 30 SP - 13537 EP - 13543 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Filimon, Marlena A1 - Kopf, Ilona A1 - Schmidt, Dietrich A. A1 - Bruendermann, Erik A1 - Rühe, Jürgen A1 - Santer, Svetlana A1 - Havenith, Martina T1 - Local chemical composition of nanophase-separated polymer brushes JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - Using scattering scanning nearfield infrared microscopy (s-SNIM), we have imaged the nanoscale phase separation of mixed polystyrene-poly(methyl methacrylate) (PS-PMMA) brushes and investigated changes in the top layer as a function of solvent exposure. We deduce that the top-layer of the mixed brushes is composed primarily of PMMA after exposure to acetone, while after exposure to toluene this changes to PS. Access to simultaneously measured topographic and chemical information allows direct correlation of the chemical morphology of the sample with topographic information. Our results demonstrate the potential of s-SNIM for chemical mapping based on distinct infrared absorption properties of polymers with a high spatial resolution of 80 nm x 80 nm. Y1 - 2011 U6 - https://doi.org/10.1039/c0cp02756a SN - 1463-9076 VL - 13 IS - 24 SP - 11620 EP - 11626 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Dodoo, S. A1 - Steitz, R. A1 - Laschewsky, André A1 - von Klitzing, Regine T1 - Effect of ionic strength and type of ions on the structure of water swollen polyelectrolyte multilayers JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - This study addresses the effect of ionic strength and type of ions on the structure and water content of polyelectrolyte multilayers. Polyelectrolyte multilayers of poly(sodium-4-styrene sulfonate) (PSS) and poly(diallyl dimethyl ammonium chloride) (PDADMAC) prepared at different NaF, NaCl and NaBr concentrations have been investigated by neutron reflectometry against vacuum, H2O and D2O. Both thickness and water content of the multilayers increase with increasing ionic strength and increasing ion size. Two types of water were identified, "void water" which fills the voids of the multilayers and does not contribute to swelling but to a change in scattering length density and "swelling water" which directly contributes to swelling of the multilayers. The amount of void water decreases with increasing salt concentration and anion radius while the amount of swelling water increases with salt concentration and anion radius. This is interpreted as a denser structure in the dry state and larger ability to swell in water (sponge) for multilayers prepared from high ionic strengths and/or salt solution of large anions. No exchange of hydration water or replacement of H by D was detected even after eight hours incubation time in water of opposing isotopic composition. Y1 - 2011 U6 - https://doi.org/10.1039/c0cp01357a SN - 1463-9076 VL - 13 IS - 21 SP - 10318 EP - 10325 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Füchsel, Gernot A1 - Klamroth, Tillmann A1 - Monturet, Serge A1 - Saalfrank, Peter T1 - Dissipative dynamics within the electronic friction approach the femtosecond laser desorption of H-2/D-2 from Ru(0001) JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - An electronic friction approach based on Langevin dynamics is used to describe the multidimensional (six-dimensional) dynamics of femtosecond laser induced desorption of H-2 and D-2 from a H(D)-covered Ru(0001) surface. The paper extends previous reduced-dimensional models, using a similar approach. In the present treatment forces and frictional coefficients are calculated from periodic density functional theory (DFT) and essentially parameter-free, while the action of femtosecond laser pulses on the metal surface is treated by using the two-temperature model. Our calculations shed light on the performance and validity of various adiabatic, non-adiabatic, and Arrhenius/Kramers type kinetic models to describe hot-electron mediated photoreactions at metal surfaces. The multidimensional frictional dynamics are able to reproduce and explain known experimental facts, such as strong isotope effects, scaling of properties with laser fluence, and non-equipartitioning of vibrational, rotational, and translational energies of desorbing species. Further, detailed predictions regarding translations are made, and the question for the controllability of photoreactions at surfaces with the help of vibrational preexcitation is addressed. Y1 - 2011 U6 - https://doi.org/10.1039/c0cp02086a SN - 1463-9076 VL - 13 IS - 19 SP - 8659 EP - 8670 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Bartlett, Nate C. -M. A1 - Jankunas, Justin A1 - Goswami, Tapas A1 - Zare, Richard N. A1 - Bouakline, Foudhil A1 - Althorpe, Stuart C. T1 - Differential cross sections for H + D-2 -> HD(v '=2, j '=0,3,6,9) + D at center-of-mass collision energies of 1.25, 1.61, and 1.97 eV JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - We have measured differential cross sections (DCSs) for the reaction H + D-2 -> HD- (v' = 2, j' = 0,3,6,9) + D at center-of-mass collision energies E-coll of 1.25, 1.61, and 1.97 eV using the photoloc technique. The DCSs show a strong dependence on the product rotational quantum number. For the HD(v' = 2, j' = 0) product, the DCS is bimodal but becomes oscillatory as the collision energy is increased. For the other product states, they are dominated by a single peak, which shifts from back to sideward scattering as j' increases, and they are in general less sensitive to changes in the collision energy. The experimental results are compared to quantum mechanical calculations and show good, but not fully quantitative agreement. Y1 - 2011 U6 - https://doi.org/10.1039/c0cp02460k SN - 1463-9076 VL - 13 IS - 18 SP - 8175 EP - 8179 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Belova, Valentina A1 - Shchukin, Dmitry G. A1 - Gorin, Dmitry A. A1 - Kopyshev, Alexey A1 - Moehwald, Helmuth T1 - A new approach to nucleation of cavitation bubbles at chemically modified surfaces JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - Cavitation at the solid surface normally begins with nucleation, in which defects or assembled molecules located at a liquid-solid interface act as nucleation centers and are actively involved in the evolution of cavitation bubbles. Here, we propose a simple approach to evaluate the behavior of cavitation bubbles formed under high intensity ultrasound (20 kHz, 51.3 W cm (2)) at solid surfaces, based on sonication of patterned substrates with a small roughness (less than 3 nm) and controllable surface energy. A mixture of octadecylphosphonic acid (ODTA) and octadecanethiol (ODT) was stamped on the Si wafer coated with different thicknesses of an aluminium layer (20-500 nm). We investigated the growth mechanism of cavitation bubble nuclei and the evolution of individual pits (defects) formed under sonication on the modified surface. A new activation behavior as a function of Al thickness, sonication time, ultrasonic power and temperature is reported. In this process cooperativity is introduced, as initially formed pits further reduce the energy to form bubbles. Furthermore, cavitation on the patterns is a controllable process, where up to 40-50 min of sonication time only the hydrophobic areas are active nucleation sites. This study provides a convincing proof of our theoretical approach on nucleation. Y1 - 2011 U6 - https://doi.org/10.1039/c1cp20218a SN - 1463-9076 VL - 13 IS - 17 SP - 8015 EP - 8023 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Horsch, Philipp A1 - Urbasch, Gunter A1 - Weitzel, Karl-Michael A1 - Kroener, Dominik T1 - Circular dichroism in ion yields employing femtosecond laser ionization-the role of laser pulse duration JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - The circular dichroism (CD) induced by femtosecond laser pulse excitation of 3-methylcyclopentanone has been investigated by means of experiment and theory as a function of the laser pulse duration. In the experiment the CD in ion yields is measured by femtosecond laser ionization via a one-photon resonant excited state. In the theoretical part the CD is calculated by solving laser driven quantum electron dynamics for the same resonant excitation based on ab initio electronic structure calculations employing a complete description of the electric field-electric dipole and magnetic field-magnetic dipole interactions. Both the experimentally measured CD in ion yields and the calculated CD in excited state populations exhibit a marked increase of the CD for pulse duration increasing from 50 fs to about 200 fs. Beyond 200 fs pulse duration the CD levels off. The combination of experimental and theoretical evidences indicates that the CD decreases with increasing laser intensity connected to the increased coupling between the excited states. Y1 - 2011 U6 - https://doi.org/10.1039/c0cp01903h SN - 1463-9076 VL - 13 IS - 6 SP - 2378 EP - 2386 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Richter, Rico A1 - Döllner, Jürgen Roland Friedrich T1 - Integrated real-time visualisation of massive 3D-Point clouds and geo-referenced textured dates JF - Photogrammetrie, Fernerkundung, Geoinformation Y1 - 2011 SN - 1432-8364 IS - 3 SP - 145 EP - 154 PB - Schweizerbart CY - Stuttgart ER - TY - JOUR A1 - Klaus, Valentin H. A1 - Kleinebecker, Till A1 - Hoelzel, Norbert A1 - Bluethgen, Nico A1 - Boch, Steffen A1 - Müller, Jörg A1 - Socher, Stephanie A. A1 - Prati, Daniel A1 - Fischer, Markus T1 - Nutrient concentrations and fibre contents of plant community biomass reflect species richness patterns along a broad range of land-use intensities among agricultural grasslands JF - Perspectives in plant ecology, evolution and systematics N2 - Understanding changes in biodiversity in agricultural landscapes in relation to land-use type and intensity is a major issue in current ecological research. In this context nutrient enrichment has been identified as a key mechanism inducing species loss in Central European grassland ecosystems. At the same time, insights into the linkage between agricultural land use and plant nutrient status are largely missing. So far, studies on the relationship between chemical composition of plant community biomass and biodiversity have mainly been restricted to wetlands and all these studies neglected the effects of land use. Therefore, we analyzed aboveground biomass of 145 grassland plots covering a gradient of land-use intensities in three regions across Germany. In particular, we explored relationships between vascular plant species richness and nutrient concentrations as well as fibre contents (neutral and acid detergent fibre and lignin) in the aboveground community biomass. We found the concentrations of several nutrients in the biomass to be closely linked to plant species richness and land use. Whereas phosphorus concentrations increased with land-use intensity and decreased with plant species richness, nitrogen and potassium concentrations showed less clear patterns. Fibre fractions were negatively related to nutrient concentrations in biomass, but hardly to land-use measures and species richness. Only high lignin contents were positively associated with species richness of grasslands. The N:P ratio was strongly positively related to species richness and even more so to the number of endangered plant species, indicating a higher persistence of endangered species under P (co-)limited conditions. Therefore, we stress the importance of low P supply for species-rich grasslands and suggest the N:P ratio in community biomass to be a useful proxy of the conservation value of agriculturally used grasslands. KW - Biodiversity exploratories KW - Fertilization KW - Grazing KW - Land use KW - Mowing KW - Nitrogen KW - Nutrient limitation KW - Phosphorus KW - Productivity Y1 - 2011 U6 - https://doi.org/10.1016/j.ppees.2011.07.001 SN - 1433-8319 VL - 13 IS - 4 SP - 287 EP - 295 PB - Elsevier CY - Jena ER - TY - JOUR A1 - Albert, Cécile H. A1 - Grassein, Fabrice A1 - Schurr, Frank Martin A1 - Vieilledent, Ghislain A1 - Violle, Cyrille T1 - When and how should intraspecific variability be considered in trait-based plant ecology? JF - Perspectives in plant ecology, evolution and systematics N2 - Trait-based studies have become extremely common in plant ecology. Trait-based approaches often rely on the tacit assumption that intraspecific trait variability (ITV) is negligible compared to interspecific variability, so that species can be characterized by mean trait values. Yet, numerous recent studies have challenged this assumption by showing that ITV significantly affects various ecological processes. Accounting for ITV may thus strengthen trait-based approaches, but measuring trait values on a large number of individuals per species and site is not feasible. Therefore, it is important and timely to synthesize existing knowledge on ITV in order to (1) decide critically when ITV should be considered, and (2) establish methods for incorporating this variability. Here we propose a practical set of rules to identify circumstances under which ITV should be accounted for. We formulate a spatial trait variance partitioning hypothesis to highlight the spatial scales at which ITV cannot be ignored in ecological studies. We then refine a set of four consecutive questions on the research question, the spatial scale, the sampling design, and the type of studied traits, to determine case-by-case if a given study should quantify ITV and test its effects. We review methods for quantifying ITV and develop a step-by-step guideline to design and interpret simulation studies that test for the importance of ITV. Even in the absence of quantitative knowledge on ITV, its effects can be assessed by varying trait values within species within realistic bounds around the known mean values. We finish with a discussion of future requirements to further incorporate ITV within trait-based approaches. This paper thus delineates a general framework to account for ITV and suggests a direction towards a more quantitative trait-based ecology. KW - Comparative ecology KW - Functional ecology KW - Genetic variability KW - Intraspecific functional variability KW - Phenotypic plasticity KW - Plant functional hairs KW - Within-species variability Y1 - 2011 U6 - https://doi.org/10.1016/j.ppees.2011.04.003 SN - 1433-8319 VL - 13 IS - 3 SP - 217 EP - 225 PB - Elsevier CY - Jena ER - TY - JOUR A1 - Knobloch, Jörn T1 - Postdemocracy and postsocialism the convergence of two crises by using the example of Russia JF - Österreichische Zeitschrift für Politikwissenschaft N2 - The article compares the postdemocracy with the postsocialism. At first the paper analyzes the debate of the postdemocracy and points out an analytical model of postdemocracy. Afterwards the paper searches for symptoms of the postdemocracy within the case of Russia which appears as one possible ideal type of postsocialism. The comparison shows that both post-phenomenons are two sides of one global process of transformation. However, the case of postsocialism acts as a trendsetter. The postsocialist Russia sets an example for the possible developments of the postdemocracy. KW - Postdemocracy KW - Postsocialism KW - Russia KW - power KW - depoliticization Y1 - 2011 SN - 1615-5548 VL - 40 IS - 2 SP - 169 EP - + PB - Facultas.wuv CY - Wien ER - TY - JOUR A1 - Wessig, Pablo A1 - Matthes, Annika A1 - Pick, Charlotte T1 - The photo-dehydro-Diels-Alder (PDDA) reaction JF - Organic & biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry N2 - The photo-dehydro-Diels-Alder (PDDA) reaction is a valuable extension of the classical Diels-Alder (DA) reaction. The PDDA reaction differs from the DA reaction by the replacement of one of the C-C-double bonds of the diene moiety by a C-C triple bond and by the photochemical triggering of the reaction. This entails that, in contrast to the DA reaction, the PDDA reaction proceeds according to a multistage mechanism with biradicals and cycloallenes as intermediates. The PDDA reaction provides access to a considerable variety of compound classes. For example, 1-phenylnaphthlenes, 1,1'-binaphthyls, N-heterocyclic biaryls, and naphthalenophanes could be obtained by this reaction. Y1 - 2011 U6 - https://doi.org/10.1039/c1ob06066j SN - 1477-0520 VL - 9 IS - 22 SP - 7599 EP - 7605 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Schmidt, Bernd A1 - Hölter, Frank T1 - Suzuki-Miyaura cross coupling reactions with Phenoldiazonium salts JF - Organic & biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry N2 - The Suzuki-Miyaura coupling of phenol diazonium salts and aryl trifluoroborates yields 4-hydroxybiaryls in a protecting group-free synthesis. Y1 - 2011 U6 - https://doi.org/10.1039/c1ob05256j SN - 1477-0520 VL - 9 IS - 13 SP - 4914 EP - 4920 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Kleinpeter, Erich A1 - Laemmermann, Anica A1 - Kühn, Heiner T1 - The anisotropic effect of functional groups in H-1 NMR spectra is the molecular response property of spatial nucleus independent chemical shifts (NICS)-Conformational equilibria of exo/endo tetrahydrodicyclopentadiene derivatives JF - Organic & biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry N2 - The inversion of the flexible five-membered ring in tetrahydrodicyclopentadiene (TH-DCPD) derivatives remains fast on the NMR timescale even at 103 K. Since the intramolecular exchange process could not be sufficiently slowed for spectroscopic evaluation, the conformational equilibrium is thus inaccessible by dynamic NMR. Fortunately, the spatial magnetic properties of the aryl and carbonyl groups attached to the DCPD skeleton can be employed in order to evaluate the conformational state of the system. In this context, the anisotropic effects of the functional groups in the H-1 NMR spectra prove to be the molecular response property of spatial nucleus independent chemical shifts (NICS). Y1 - 2011 U6 - https://doi.org/10.1039/c0ob00356e SN - 1477-0520 VL - 9 IS - 4 SP - 1098 EP - 1111 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Buchmann, Carsten M. A1 - Schurr, Frank Martin A1 - Nathan, Ran A1 - Jeltsch, Florian T1 - An allometric model of home range formation explains the structuring of animal communities exploiting heterogeneous resources JF - Oikos N2 - Understanding and predicting the composition and spatial structure of communities is a central challenge in ecology. An important structural property of animal communities is the distribution of individual home ranges. Home range formation is controlled by resource heterogeneity, the physiology and behaviour of individual animals, and their intra- and interspecific interactions. However, a quantitative mechanistic understanding of how home range formation influences community composition is still lacking. To explore the link between home range formation and community composition in heterogeneous landscapes we combine allometric relationships for physiological properties with an algorithm that selects optimal home ranges given locomotion costs, resource depletion and competition in a spatially-explicit individual-based modelling framework. From a spatial distribution of resources and an input distribution of animal body mass, our model predicts the size and location of individual home ranges as well as the individual size distribution (ISD) in an animal community. For a broad range of body mass input distributions, including empirical body mass distributions of North American and Australian mammals, our model predictions agree with independent data on the body mass scaling of home range size and individual abundance in terrestrial mammals. Model predictions are also robust against variation in habitat productivity and landscape heterogeneity. The combination of allometric relationships for locomotion costs and resource needs with resource competition in an optimal foraging framework enables us to scale from individual properties to the structure of animal communities in heterogeneous landscapes. The proposed spatially-explicit modelling concept not only allows for detailed investigation of landscape effects on animal communities, but also provides novel insights into the mechanisms by which resource competition in space shapes animal communities. Y1 - 2011 U6 - https://doi.org/10.1111/j.1600-0706.2010.18556.x SN - 0030-1299 VL - 120 IS - 1 SP - 106 EP - 118 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Rocha, Marcia R. A1 - Vasseur, David A. A1 - Hayn, Michael A1 - Holschneider, Matthias A1 - Gaedke, Ursula T1 - Variability patterns differ between standing stock and process rates JF - Oikos N2 - Standing stocks are typically easier to measure than process rates such as production. Hence, stocks are often used as indicators of ecosystem functions although the latter are generally more strongly related to rates than to stocks. The regulation of stocks and rates and thus their variability over time may differ, as stocks constitute the net result of production and losses. Based on long-term high frequency measurements in a large, deep lake we explore the variability patterns in primary and bacterial production and relate them to those of the corresponding standing stocks, i.e. chlorophyll concentration, phytoplankton and bacterial biomass. We employ different methods (coefficient of variation, spline fitting and spectral analysis) which complement each other for assessing the variability present in the plankton data, at different temporal scales. In phytoplankton, we found that the overall variability of primary production is dominated by fluctuations at low frequencies, such as the annual, whereas in stocks and chlorophyll in particular, higher frequencies contribute substantially to the overall variance. This suggests that using standing stocks instead of rate measures leads to an under- or overestimation of food shortage for consumers during distinct periods of the year. The range of annual variation in bacterial production is 8 times greater than biomass, showing that the variability of bacterial activity (e.g. oxygen consumption, remineralisation) would be underestimated if biomass is used. The P/B ratios were variable and although clear trends are present in both bacteria and phytoplankton, no systematic relationship between stock and rate measures were found for the two groups. Hence, standing stock and process rate measures exhibit different variability patterns and care is needed when interpreting the mechanisms and implications of the variability encountered. Y1 - 2011 U6 - https://doi.org/10.1111/j.1600-0706.2010.18786.x SN - 0030-1299 VL - 120 IS - 1 SP - 17 EP - 25 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Donges, Jonathan A1 - Donner, Reik Volker A1 - Rehfeld, Kira A1 - Marwan, Norbert A1 - Trauth, Martin H. A1 - Kurths, Jürgen T1 - Identification of dynamical transitions in marine palaeoclimate records by recurrence network analysis JF - Nonlinear processes in geophysics N2 - The analysis of palaeoclimate time series is usually affected by severe methodological problems, resulting primarily from non-equidistant sampling and uncertain age models. As an alternative to existing methods of time series analysis, in this paper we argue that the statistical properties of recurrence networks - a recently developed approach - are promising candidates for characterising the system's nonlinear dynamics and quantifying structural changes in its reconstructed phase space as time evolves. In a first order approximation, the results of recurrence network analysis are invariant to changes in the age model and are not directly affected by non-equidistant sampling of the data. Specifically, we investigate the behaviour of recurrence network measures for both paradigmatic model systems with non-stationary parameters and four marine records of long-term palaeoclimate variations. We show that the obtained results are qualitatively robust under changes of the relevant parameters of our method, including detrending, size of the running window used for analysis, and embedding delay. We demonstrate that recurrence network analysis is able to detect relevant regime shifts in synthetic data as well as in problematic geoscientific time series. This suggests its application as a general exploratory tool of time series analysis complementing existing methods. Y1 - 2011 U6 - https://doi.org/10.5194/npg-18-545-2011 SN - 1023-5809 VL - 18 IS - 5 SP - 545 EP - 562 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Benmehdi, Sabah A1 - Makarava, Natallia A1 - Benhamidouche, N. A1 - Holschneider, Matthias T1 - Bayesian estimation of the self-similarity exponent of the Nile River fluctuation JF - Nonlinear processes in geophysics N2 - The aim of this paper is to estimate the Hurst parameter of Fractional Gaussian Noise (FGN) using Bayesian inference. We propose an estimation technique that takes into account the full correlation structure of this process. Instead of using the integrated time series and then applying an estimator for its Hurst exponent, we propose to use the noise signal directly. As an application we analyze the time series of the Nile River, where we find a posterior distribution which is compatible with previous findings. In addition, our technique provides natural error bars for the Hurst exponent. Y1 - 2011 U6 - https://doi.org/10.5194/npg-18-441-2011 SN - 1023-5809 VL - 18 IS - 3 SP - 441 EP - 446 PB - Copernicus CY - Göttingen ER - TY - GEN A1 - Nikoloski, Zoran A1 - van Dongen, Joost T. T1 - Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions T2 - New phytologist : international journal of plant science KW - hypoxia KW - modeling KW - regulation KW - respiration KW - roots Y1 - 2011 U6 - https://doi.org/10.1111/j.1469-8137.2011.03674.x SN - 0028-646X VL - 190 IS - 2 SP - 273 EP - 276 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Arvidsson, Samuel Janne A1 - Perez-Rodriguez, Paulino A1 - Müller-Röber, Bernd T1 - A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects JF - New phytologist : international journal of plant science N2 - To gain a deeper understanding of the mechanisms behind biomass accumulation, it is important to study plant growth behavior. Manually phenotyping large sets of plants requires important human resources and expertise and is typically not feasible for detection of weak growth phenotypes. Here, we established an automated growth phenotyping pipeline for Arabidopsis thaliana to aid researchers in comparing growth behaviors of different genotypes. The analysis pipeline includes automated image analysis of two-dimensional digital plant images and evaluation of manually annotated information of growth stages. It employs linear mixed-effects models to quantify genotype effects on total rosette area and relative leaf growth rate (RLGR) and ANOVAs to quantify effects on developmental times. Using the system, a single researcher can phenotype up to 7000 plants d(-1). Technical variance is very low (typically < 2%). We show quantitative results for the growth-impaired starch-excessmutant sex4-3 and the growth-enhancedmutant grf9. We show that recordings of environmental and developmental variables reduce noise levels in the phenotyping datasets significantly and that careful examination of predictor variables (such as d after sowing or germination) is crucial to avoid exaggerations of recorded phenotypes and thus biased conclusions. KW - development KW - growth KW - leaf area KW - modeling KW - phenotyping Y1 - 2011 U6 - https://doi.org/10.1111/j.1469-8137.2011.03756.x SN - 0028-646X VL - 191 IS - 3 SP - 895 EP - 907 PB - Wiley-Blackwell CY - Malden ER -