TY - THES A1 - Montulet, Orianne T1 - Functional characterization of putative interactors of the Cellulose Synthase Complex Y1 - 2024 ER - TY - THES A1 - Apodiakou, Anastasia T1 - Analysis of the regulation of SDI genes, unravelling the role of the SLIM1 transcription factor, and the SNRK3.15 kinase in Arabidopsis under sulfur deprivation Y1 - 2024 ER - TY - THES A1 - Seerangan, Kumar T1 - Actin-based regulation of cell and tissue scale morphologenesis in develpoping leaves Y1 - 2023 ER - TY - JOUR A1 - Marin-Beloqui, Jose A1 - Zhang, Guanran A1 - Guo, Junjun A1 - Shaikh, Jordan A1 - Wohrer, Thibaut A1 - Hosseini, Seyed Mehrdad A1 - Sun, Bowen A1 - Shipp, James A1 - Auty, Alexander J. A1 - Chekulaev, Dimitri A1 - Ye, Jun A1 - Chin, Yi-Chun A1 - Sullivan, Michael B. A1 - Mozer, Attila J. A1 - Kim, Ji-Seon A1 - Shoaee, Safa A1 - Clarke, Tracey M. T1 - Insight into the origin of trapping in polymer/fullerene blends with a systematic alteration of the fullerene to higher adducts JF - Journal of physical chemistry C N2 - The bimolecular recombination characteristics of conjugated polymer poly[(4,4'-bis(2-ethylhexyl)dithieno[3,2-b:2',3'-d]silole)-2,6-diyl-alt-(2,5-bis 3-tetradecylthiophen-2-y1 thiazolo 5,4-d thiazole)-2,5diy1] (PDTSiTTz) blended with the fullerene series PC60BM, ICMA, ICBA, and ICTA have been investigated using microsecond and femtosecond transient absorption spectroscopy, in conjunction with electroluminescence measurements and ambient photoemission spectroscopy. The non-Langevin polymer PDTSiTTz allows an inspection of intrinsic bimolecular recombination rates uninhibited by diffusion, while the low oscillator strengths of fullerenes allow polymer features to dominate, and we compare our results to those of the well-known polymer Si-PCPDTBT. Using mu s-TAS, we have shown that the trap -limited decay dynamics of the PDTSiTTz polaron becomes progressively slower across the fullerene series, while those of Si-PCPDTBT are invariant. Electroluminescence measurements showed an unusual double peak in pristine PDTSiTTz, attributed to a low energy intragap charge transfer state, likely interchain in nature. Furthermore, while the pristine PDTSiTTz showed a broad, low-intensity density of states, the ICBA and ICTA blends presented a virtually identical DOS to Si-PCPDTBT and its blends. This has been attributed to a shift from a delocalized, interchain highest occupied molecular orbital (HOMO) in the pristine material to a dithienosilole-centered HOMO in the blends, likely a result of the bulky fullerenes increasing interchain separation. This HOMO localization had a side effect of progressively shifting the polymer HOMO to shallower energies, which was correlated with the observed decrease in bimolecular recombination rate and increased "trap" depth. However, since the density of tail states remained the same, this suggests that the traditional viewpoint of "trapping" being dominated by tail states may not encompass the full picture and that the breadth of the DOS may also have a strong influence on bimolecular recombination. Y1 - 2022 U6 - https://doi.org/10.1021/acs.jpcc.1c10378 SN - 1932-7447 SN - 1932-7455 VL - 126 IS - 5 SP - 2708 EP - 2719 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Flóvenz, Ólafur G. A1 - Wang, Rongjiang A1 - Hersir, Gylfi Páll A1 - Dahm, Torsten A1 - Hainzl, Sebastian A1 - Vassileva, Magdalena A1 - Drouin, Vincent A1 - Heimann, Sebastian A1 - Isken, Marius Paul A1 - Gudnason, Egill Á. A1 - Ágústsson, Kristján A1 - Ágústsdóttir, Thorbjörg A1 - Horálek, Josef A1 - Motagh, Mahdi A1 - Walter, Thomas R. A1 - Rivalta, Eleonora A1 - Jousset, Philippe A1 - Krawczyk, Charlotte M. A1 - Milkereit, Claus T1 - Cyclical geothermal unrest as a precursor to Iceland's 2021 Fagradalsfjall eruption JF - Nature geoscience N2 - Understanding and constraining the source of geodetic deformation in volcanic areas is an important component of hazard assessment. Here, we analyse deformation and seismicity for one year before the March 2021 Fagradalsfjall eruption in Iceland. We generate a high-resolution catalogue of 39,500 earthquakes using optical cable recordings and develop a poroelastic model to describe three pre-eruptional uplift and subsidence cycles at the Svartsengi geothermal field, 8 km west of the eruption site. We find the observed deformation is best explained by cyclic intrusions into a permeable aquifer by a fluid injected at 4 km depth below the geothermal field, with a total volume of 0.11 ± 0.05 km3 and a density of 850 ± 350 kg m–3. We therefore suggest that ingression of magmatic CO2 can explain the geodetic, gravity and seismic data, although some contribution of magma cannot be excluded. Y1 - 2022 U6 - https://doi.org/10.1038/s41561-022-00930-5 SN - 1752-0894 SN - 1752-0908 VL - 15 IS - 5 SP - 397 EP - 404 PB - Nature Research CY - Berlin ER - TY - JOUR A1 - Kaya, Mustafa Yücel A1 - Dupont-Nivet, Guillaume A1 - Frieling, Joost A1 - Fioroni, Chiara A1 - Rohrmann, Alexander A1 - Altıner, Sevinç Özkan A1 - Vardar, Ezgi A1 - Tanyas, Hakan A1 - Mamtimin, Mehmut A1 - Zhaojie, Guo T1 - The Eurasian epicontinental sea was an important carbon sink during the Palaeocene-Eocene thermal maximum JF - Communications earth and environment N2 - The Palaeocene-Eocene Thermal Maximum (ca. 56 million years ago) offers a primary analogue for future global warming and carbon cycle recovery. Yet, where and how massive carbon emissions were mitigated during this climate warming event remains largely unknown. Here we show that organic carbon burial in the vast epicontinental seaways that extended over Eurasia provided a major carbon sink during the Palaeocene-Eocene Thermal Maximum. We coupled new and existing stratigraphic analyses to a detailed paleogeographic framework and using spatiotemporal interpolation calculated ca. 720–1300 Gt organic carbon excess burial, focused in the eastern parts of the Eurasian epicontinental seaways. A much larger amount (2160–3900 Gt C, and when accounting for the increase in inundated shelf area 7400–10300 Gt C) could have been sequestered in similar environments globally. With the disappearance of most epicontinental seas since the Oligocene-Miocene, an effective negative carbon cycle feedback also disappeared making the modern carbon cycle critically dependent on the slower silicate weathering feedback. Y1 - 2022 U6 - https://doi.org/10.1038/s43247-022-00451-4 SN - 2662-4435 VL - 3 IS - 1 PB - Springer Nature CY - London ER - TY - THES A1 - Hagemann, Justus T1 - On the molecular evolution of sengis (Macroscelidea) N2 - This thesis focuses on the molecular evolution of Macroscelidea, commonly referred to as sengis. Sengis are a mammalian order belonging to the Afrotherians, one of the four major clades of placental mammals. Sengis currently consist of twenty extant species, all of which are endemic to the African continent. They can be separated in two families, the soft-furred sengis (Macroscelididae) and the giant sengis (Rhynchocyonidae). While giant sengis can be exclusively found in forest habitats, the different soft-furred sengi species dwell in a broad range of habitats, from tropical rain-forests to rocky deserts. Our knowledge on the evolutionary history of sengis is largely incomplete. The high level of superficial morphological resemblance among different sengi species (especially the soft-furred sengis) has for example led to misinterpretations of phylogenetic relationships, based on morphological characters. With the rise of DNA based taxonomic inferences, multiple new genera were defined and new species described. Yet, no full taxon molecular phylogeny exists, hampering the answering of basic taxonomic questions. This lack of knowledge can be to some extent attributed to the limited availability of fresh-tissue samples for DNA extraction. The broad African distribution, partly in political unstable regions and low population densities complicate contemporary sampling approaches. Furthermore, the DNA information available usually covers only short stretches of the mitochondrial genome and thus a single genetic locus with limited informational content. Developments in DNA extraction and library protocols nowadays offer the opportunity to access DNA from museum specimens, collected over the past centuries and stored in natural history museums throughout the world. Thus, the difficulties in fresh-sample acquisition for molecular biological studies can be overcome by the application of museomics, the research field which emerged from those laboratory developments. This thesis uses fresh-tissue samples as well as a vast collection museum specimens to investigate multiple aspects about the macroscelidean evolutionary history. Chapter 4 of this thesis focuses on the phylogenetic relationships of all currently known sengi species. By accessing DNA information from museum specimens in combination of fresh tissue samples and publicly available genetic resources it produces the first full taxon molecular phylogeny of sengis. It confirms the monophyly of the genus Elephantulus and discovers multiple deeply divergent lineages within different species, highlighting the need for species specific approaches. The study furthermore focuses on the evolutionary time frame of sengis by evaluating the impact of commonly varied parameters on tree dating. The results of the study show, that the mitochondrial information used in previous studies to temporal calibrate the Macroscelidean phylogeny led to an overestimation of node ages within sengis. Especially soft-furred sengis are thus much younger than previously assumed. The refined knowledge of nodes ages within sengis offer the opportunity to link e.g. speciation events to environmental changes. Chapter 5 focuses on the genus Petrodromus with its single representative Petrodromus tetradactylus. It again exploits the opportunities of museomics and gathers a comprehensive, multi-locus genetic dataset of P. tetradactylus individuals, distributed across most the known range of this species. It reveals multiple deeply divergent lineages within Petrodromus, whereby some could possibly be associated to previously described sub-species, at least one was formerly unknown. It underscores the necessity for a revision of the genus Petrodromus through the integration of both molecular and morphological evidence. The study, furthermore identifies changing forest distributions through climatic oscillations as main factor shaping the genetic structure of Petrodromus. Chapter 6 uses fresh tissue samples to extent the genomic resources of sengis by thirteen new nuclear genomes, of which two were de-novo assembled. An extensive dataset of more than 8000 protein coding one-to-one orthologs allows to further refine and confirm the temporal time frame of sengi evolution found in Chapter 4. This study moreover investigates the role of gene-flow and incomplete lineage sorting (ILS) in sengi evolution. In addition it identifies clade specific genes of possible outstanding evolutionary importance and links them to potential phenotypic traits affected. A closer investigation of olfactory receptor proteins reveals clade specific differences. A comparison of the demographic past of sengis to other small African mammals does not reveal a sengi specific pattern. N2 - Diese Dissertation untersucht die molekulare Evolution von Macroscelidea, auch als Sengis oder Rüsselspringer bezeichnet. Sengis sind eine Ordnung der Afrotheria, einer der vier Hauptkladen der plazentalen Säugetiere. Aktuell gibt es zwanzig beschriebene Sengiarten, die alle ausschließlich auf dem afrikanischen Kontinent vorkommen. Sengis können in zwei Familien unterteilt werden: die Elephantenspitzmäuse zusammen mit den Rüsselratten bilden die Macroscelididae und die Rüsselhündchen die Rhynchocyonidae. Während Rhynchocyonidae ausschließlich in Waldhabitaten zu finden sind, bewohnen verschiedene Macroscelididaearten ein breites Spektrum von Lebensräumen, von tropischen Regenwäldern bis zu felsigen Wüsten. Unser Wissen über die evolutionäre Geschichte der Sengis ist äußerst unvollständig. Der hohe Grad an morphologischer Ähnlichkeit zwischen verschiedenen Sengiarten (insbesondere innerhalb der Macroscelididae) hat beispielsweise zu Fehlinterpretationen phylogenetischer Beziehungen auf der Grundlage morphologischer Merkmale geführt. Mit dem Aufkommen DNA-basierter taxonomischer Forschung wurden mehrere neue Gattungen definiert und neue Arten beschrieben. Dennoch existiert derzeit keine vollständige molekulare Phylogenie, was die Beantwortung grundlegender taxonomischer Fragen und tiefergehende evolutionsbiologische Analysen erschwert. Dieser Mangel an Wissen kann zum Teil auf die begrenzte Verfügbarkeit von frischen Gewebeproben für die DNA-Extraktion zurückgeführt werden. Die weite Verbreitung in Afrika, teilweise in politisch instabilen Regionen und geringe Populationssdichten von Sengis erschweren das Sammeln von frischem Probenmaterial, was für die Extraktion von DNA genutzt werden kann. Darüber hinaus deckt die bis jetzt verfügbare DNA-Information über Sengis häufig nur kurze Abschnitte des mitochondrialen Genoms ab und damit einen einzelnen genetischen Lokus mit begrenztem Informationsgehalt. Fortentwicklungen von DNA-Extraktions-Protokollen und Library-Protokollen bieten heutzutage die Möglichkeit, auf DNA von Museumsexemplaren zuzugreifen, die über die letzten Jahrhunderte gesammelt und in Naturkundemuseen weltweit aufbewahrt werden. Somit können die Schwierigkeiten bei der Beschaffung von Frischproben für molekularbiologische Studien überwunden werden. Diese Dissertation verwendet sowohl Frischgewebeproben als auch eine umfangreiche Sammlung von Museumssproben, um verschiedene Aspekte der evolutionären Geschichte der Sengis molekularbiologisch zu untersuchen. Kapitel 4 dieser Dissertation konzentriert sich auf die phylogenetischen Beziehungen aller derzeit bekannten Sengiarten. Durch das Generieren von DNA-Information aus Museumsexemplaren in Kombination mit Frischgewebeproben und öffentlich verfügbaren genetischen Ressourcen wird die erste vollständige molekulare Phylogenie aller Rüsselspringer erzeugt. Die Studie bestätigt die Monophylie der Gattung Elephantulus und entdeckt mehrere tief divergente Linien innerhalb verschiedener Arten, was die Notwendigkeit speziesbezogener Ansätze verdeutlicht. Die Studie konzentriert sich außerdem auf den Zeitrahmen der Sengi-Evolution, indem sie die Auswirkungen häufig variierter Parameter auf die Datierung von Stammbäumen untersucht. Die Ergebnisse zeigen, dass die mitochondriale Information, die in früheren Studien zur zeitlichen Kalibrierung der Macroscelidean-Phylogenie verwendet wurde, zu einer Überschätzung des Alters von Arttrennungen innerhalb der Rüsselspringer geführt hat. Insbesondere die Macroscelididae sind daher viel jünger als zuvor angenommen. Das präzisere Wissen über das evolutionäre Alter von Rüsselspringern bietet die Möglichkeit, beispielsweise Artaufspaltungen mit Umweltveränderungen zu verknüpfen. Kapitel 5 konzentriert sich auf die Gattung Petrodromus mit ihrem einzigen Vertreter Petrodromus tetradactylus. Es nutzt erneut die Museomics und sammelt einen umfassenden, genetischen Datensatz von P. tetradactylus-Individuen, die über den größten Teil des bekannten Verbreitungsgebiets dieser Art verteilt sind. Es zeigt mehrere tief divergente Linien innerhalb von Petrodromus auf, wobei einige mit zuvor beschriebenen Unterarten in Verbindung gebracht werden könnten, mindestens eine aber zuvor unbekannt war. Die Ergebnisse verdeutlichen die Notwendigkeit einer taxonomischen Überarbeitung der Gattung Petrodromus durch das Zusammenführen sowohl molekularer als auch morphologischer Indizien. Die Studie identifizier außerdem sich ändernde Waldverteilungen durch klimatische Schwankungen als Hauptfaktor, der die genetische Struktur von Petrodromus formt. Kapitel 6 verwendet Frischgewebeproben, um die genomischen Ressourcen der Rüsselspringer durch dreizehn neue nukleare Genome zu erweitern, von denen zwei de-novo assembliert wurden. Ein umfangreicher Datensatz von mehr als 8000 protein-kodierenden 1:1-Orthologen ermöglicht es, den zeitlichen Rahmen der Rüsselspringerevolution, der in Kapitel 4 gefunden wurde, weiter zu verfeinern und zu bestätigen. Diese Studie untersucht außerdem die Rolle von Genfluss auf die Evolution der Rüsselspringer. Darüber hinaus identifiziert sie für bestimmte Kladen spezifische Gene von möglicherweise herausragender evolutionärer Bedeutung und verknüpft diese mit potenziell betroffenen phänotypischen Merkmalen. Eine genauere Untersuchung von Geruchsrezeptorproteinen zeigt kladespezifische Unterschiede auf. KW - sengis KW - evolution KW - molecular dating KW - biogeography KW - comparative genomics KW - Biogeographie KW - vergleichende Genomik KW - Evolution KW - molekulare Datierung KW - Sengis Y1 - 2024 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-641975 ER - TY - JOUR A1 - Klose, Tim A1 - Guillemoteau, Julien A1 - Vignoli, Giulio A1 - Walter, Judith A1 - Herrmann, Andreas A1 - Tronicke, Jens T1 - Structurally constrained inversion by means of a Minimum Gradient Support regularizer BT - examples of FD-EMI data inversion constrained by GPR reflection data JF - Geophysical journal international N2 - Many geophysical inverse problems are known to be ill-posed and, thus, requiring some kind of regularization in order to provide a unique and stable solution. A possible approach to overcome the inversion ill-posedness consists in constraining the position of the model interfaces. For a grid-based parameterization, such a structurally constrained inversion can be implemented by adopting the usual smooth regularization scheme in which the local weight of the regularization is reduced where an interface is expected. By doing so, sharp contrasts are promoted at interface locations while standard smoothness constraints keep affecting the other regions of the model. In this work, we present a structurally constrained approach and test it on the inversion of frequency-domain electromagnetic induction (FD-EMI) data using a regularization approach based on the Minimum Gradient Support stabilizer, which is capable to promote sharp transitions everywhere in the model, i.e., also in areas where no structural a prioriinformation is available. Using 1D and 2D synthetic data examples, we compare the proposed approach to a structurally constrained smooth inversion as well as to more standard (i.e., not structurally constrained) smooth and sharp inversions. Our results demonstrate that the proposed approach helps in finding a better and more reliable reconstruction of the subsurface electrical conductivity distribution, including its structural characteristics. Furthermore, we demonstrate that it allows to promote sharp parameter variations in areas where no structural information are available. Lastly, we apply our structurally constrained scheme to FD-EMI field data collected at a field site in Eastern Germany to image the thickness of peat deposits along two selected profiles. In this field example, we use collocated constant offset ground-penetrating radar (GPR) data to derive structural a priori information to constrain the inversion of the FD-EMI data. The results of this case study demonstrate the effectiveness and flexibility of the proposed approach. KW - Controlled source electromagnetics (CSEM) KW - Inverse theory KW - Electrical properties KW - Ground penetrating radar KW - Frequency Domain Electromagnetics KW - Inversion Y1 - 2023 U6 - https://doi.org/10.1093/gji/ggad041 SN - 0956-540X SN - 1365-246X VL - 233 IS - 3 SP - 1938 EP - 1949 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Córdoba, Sandra Correa A1 - Tong, Hao A1 - Burgos, Asdrubal A1 - Zhu, Feng A1 - Alseekh, Saleh A1 - Fernie, Alisdair R. A1 - Nikoloski, Zoran T1 - Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism JF - Nature Communications N2 - The use of automated tools to reconstruct lipid metabolic pathways is not warranted in plants. Here, the authors construct Plant Lipid Module for Arabidopsis rosette using constraint-based modeling, demonstrate its integration in other plant metabolic models, and use it to dissect the genetic architecture of lipid metabolism. Lipids play fundamental roles in regulating agronomically important traits. Advances in plant lipid metabolism have until recently largely been based on reductionist approaches, although modulation of its components can have system-wide effects. However, existing models of plant lipid metabolism provide lumped representations, hindering detailed study of component modulation. Here, we present the Plant Lipid Module (PLM) which provides a mechanistic description of lipid metabolism in the Arabidopsis thaliana rosette. We demonstrate that the PLM can be readily integrated in models of A. thaliana Col-0 metabolism, yielding accurate predictions (83%) of single lethal knock-outs and 75% concordance between measured transcript and predicted flux changes under extended darkness. Genome-wide associations with fluxes obtained by integrating the PLM in diel condition- and accession-specific models identify up to 65 candidate genes modulating A. thaliana lipid metabolism. Using mutant lines, we validate up to 40% of the candidates, paving the way for identification of metabolic gene function based on models capturing natural variability in metabolism. KW - Biochemical networks KW - Biochemical reaction networks KW - Genetic models KW - Plant molecular biology Y1 - 2023 U6 - https://doi.org/10.1038/s41467-023-40644-9 SN - 2041-1723 VL - 14 IS - 1 PB - Springer Nature CY - London ER - TY - JOUR A1 - Cesca, Simone A1 - Sugan, Monica A1 - Rudzinski, Lukasz A1 - Vajedian, Sanaz A1 - Niemz, Peter A1 - Plank, Simon A1 - Petersen, Gesa A1 - Deng, Zhiguo A1 - Rivalta, Eleonora A1 - Vuan, Alessandro A1 - Linares, Milton Percy Plasencia A1 - Heimann, Sebastian A1 - Dahm, Torsten T1 - Massive earthquake swarm driven by magmatic intrusion at the Bransfield Strait, Antarctica JF - Communications earth and environment N2 - An earthquake swarm affected the Bransfield Strait, Antarctica, a unique rift basin in transition from intra-arc rifting to ocean spreading. The swarm, counting similar to 85,000 volcano-tectonic earthquakes since August 2020, is located close to the Orca submarine volcano, previously considered inactive. Simultaneously, geodetic data reported up to similar to 11 cm north-westward displacement over King George Island. We use a broad variety of geophysical data and methods to reveal the complex migration of seismicity, accompanying the intrusion of 0.26-0.56 km(3) of magma. Strike-slip earthquakes mark the intrusion at depth, while shallower normal faulting the similar to 20 km long lateral growth of a dike. Seismicity abruptly decreased after a Mw 6.0 earthquake, suggesting the magmatic dike lost pressure with the slipping of a large fault. A seafloor eruption is likely, but not confirmed by sea surface temperature anomalies. The unrest documents episodic magmatic intrusion in the Bransfield Strait, providing unique insights into active continental rifting. Y1 - 2022 U6 - https://doi.org/10.1038/s43247-022-00418-5 SN - 2662-4435 VL - 3 IS - 1 PB - Springer Nature CY - London ER - TY - JOUR A1 - Bouamra, Marwa A1 - Zouhal, Hassane A1 - Ratel, Sébastien A1 - Makhlouf, Issam A1 - Bezrati, Ikram A1 - Chtara, Mokhtar A1 - Behm, David G. A1 - Granacher, Urs A1 - Chaouachi, Anis T1 - Concurrent training promotes greater gains on body composition and components of physical fitness than single-mode training (endurance or resistance) in youth with obesity JF - Frontiers in physiology N2 - The prevalence of obesity in the pediatric population has become a major public health issue. Indeed, the dramatic increase of this epidemic causes multiple and harmful consequences, Physical activity, particularly physical exercise, remains to be the cornerstone of interventions against childhood obesity. Given the conflicting findings with reference to the relevant literature addressing the effects of exercise on adiposity and physical fitness outcomes in obese children and adolescents, the effect of duration-matched concurrent training (CT) [50% resistance (RT) and 50% high-intensity-interval-training (HIIT)] on body composition and physical fitness in obese youth remains to be elucidated. Thus, the purpose of this study was to examine the effects of 9-weeks of CT compared to RT or HIIT alone, on body composition and selected physical fitness components in healthy sedentary obese youth. Out of 73 participants, only 37; [14 males and 23 females; age 13.4 +/- 0.9 years; body-mass-index (BMI): 31.2 +/- 4.8 kg center dot m-2] were eligible and randomized into three groups: HIIT (n = 12): 3-4 setsx12 runs at 80-110% peak velocity, with 10-s passive recovery between bouts; RT (n = 12): 6 exercises; 3-4 sets x 10 repetition maximum (RM) and CT (n = 13): 50% serial completion of RT and HIIT. CT promoted significant greater gains compared to HIIT and RT on body composition (p < 0.01, d = large), 6-min-walking test distance (6 MWT-distance) and on 6 MWT-VO2max (p < 0.03, d = large). In addition, CT showed substantially greater improvements than HIIT in the medicine ball throw test (20.2 vs. 13.6%, p < 0.04, d = large). On the other hand, RT exhibited significantly greater gains in relative hand grip strength (p < 0.03, d = large) and CMJ (p < 0.01, d = large) than HIIT and CT. CT promoted greater benefits for fat, body mass loss and cardiorespiratory fitness than HIIT or RT modalities. This study provides important information for practitioners and therapists on the application of effective exercise regimes with obese youth to induce significant and beneficial body composition changes. The applied CT program and the respective programming parameters in terms of exercise intensity and volume can be used by practitioners as an effective exercise treatment to fight the pandemic overweight and obesity in youth. KW - weight loss KW - adolescents KW - high-intensity-interval training KW - resistance KW - training KW - DXA KW - matched time Y1 - 2022 U6 - https://doi.org/10.3389/fphys.2022.869063 SN - 1664-042X VL - 13 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Cheng, Feng A1 - Dennis, Alice B. A1 - Osuoha, Josephine Ijeoma A1 - Canitz, Julia A1 - Kirschbaum, Frank A1 - Tiedemann, Ralph T1 - A new genome assembly of an African weakly electric fish (Campylomormyrus compressirostris, Mormyridae) indicates rapid gene family evolution in Osteoglossomorpha JF - BMC genomics N2 - Background Teleost fishes comprise more than half of the vertebrate species. Within teleosts, most phylogenies consider the split between Osteoglossomorpha and Euteleosteomorpha/Otomorpha as basal, preceded only by the derivation of the most primitive group of teleosts, the Elopomorpha. While Osteoglossomorpha are generally species poor, the taxon contains the African weakly electric fish (Mormyroidei), which have radiated into numerous species. Within the mormyrids, the genus Campylomormyrus is mostly endemic to the Congo Basin. Campylomormyrus serves as a model to understand mechanisms of adaptive radiation and ecological speciation, especially with regard to its highly diverse species-specific electric organ discharges (EOD). Currently, there are few well-annotated genomes available for electric fish in general and mormyrids in particular. Our study aims at producing a high-quality genome assembly and to use this to examine genome evolution in relation to other teleosts. This will facilitate further understanding of the evolution of the osteoglossomorpha fish in general and of electric fish in particular. Results A high-quality weakly electric fish (C. compressirostris) genome was produced from a single individual with a genome size of 862 Mb, consisting of 1,497 contigs with an N50 of 1,399 kb and a GC-content of 43.69%. Gene predictions identified 34,492 protein-coding genes, which is a higher number than in the two other available Osteoglossomorpha genomes of Paramormyrops kingsleyae and Scleropages formosus. A Computational Analysis of gene Family Evolution (CAFE5) comparing 33 teleost fish genomes suggests an overall faster gene family turnover rate in Osteoglossomorpha than in Otomorpha and Euteleosteomorpha. Moreover, the ratios of expanded/contracted gene family numbers in Osteoglossomorpha are significantly higher than in the other two taxa, except for species that had undergone an additional genome duplication (Cyprinus carpio and Oncorhynchus mykiss). As potassium channel proteins are hypothesized to play a key role in EOD diversity among species, we put a special focus on them, and manually curated 16 Kv1 genes. We identified a tandem duplication in the KCNA7a gene in the genome of C. compressirostris. Conclusions We present the fourth genome of an electric fish and the third well-annotated genome for Osteoglossomorpha, enabling us to compare gene family evolution among major teleost lineages. Osteoglossomorpha appear to exhibit rapid gene family evolution, with more gene family expansions than contractions. The curated Kv1 gene family showed seven gene clusters, which is more than in other analyzed fish genomes outside Osteoglossomorpha. The KCNA7a, encoding for a potassium channel central for EOD production and modulation, is tandemly duplicated which may related to the diverse EOD observed among Campylomormyrus species. KW - Campylomormyrus KW - Pacbio sequencing KW - Gene family KW - Osteoglossomorpha KW - Kv1 Y1 - 2023 U6 - https://doi.org/10.1186/s12864-023-09196-6 SN - 1471-2164 VL - 24 IS - 1 PB - BMC CY - London ER - TY - JOUR A1 - Rosin, Paul L. A1 - Lai, Yu-Kun A1 - Mould, David A1 - Yi, Ran A1 - Berger, Itamar A1 - Doyle, Lars A1 - Lee, Seungyong A1 - Li, Chuan A1 - Liu, Yong-Jin A1 - Semmo, Amir A1 - Shamir, Ariel A1 - Son, Minjung A1 - Winnemöller, Holger T1 - NPRportrait 1.0: A three-level benchmark for non-photorealistic rendering of portraits JF - Computational visual media N2 - Recently, there has been an upsurge of activity in image-based non-photorealistic rendering (NPR), and in particular portrait image stylisation, due to the advent of neural style transfer (NST). However, the state of performance evaluation in this field is poor, especially compared to the norms in the computer vision and machine learning communities. Unfortunately, the task of evaluating image stylisation is thus far not well defined, since it involves subjective, perceptual, and aesthetic aspects. To make progress towards a solution, this paper proposes a new structured, three-level, benchmark dataset for the evaluation of stylised portrait images. Rigorous criteria were used for its construction, and its consistency was validated by user studies. Moreover, a new methodology has been developed for evaluating portrait stylisation algorithms, which makes use of the different benchmark levels as well as annotations provided by user studies regarding the characteristics of the faces. We perform evaluation for a wide variety of image stylisation methods (both portrait-specific and general purpose, and also both traditional NPR approaches and NST) using the new benchmark dataset. KW - non-photorealistic rendering (NPR) KW - image stylization KW - style transfer KW - portrait KW - evaluation KW - benchmark Y1 - 2022 U6 - https://doi.org/10.1007/s41095-021-0255-3 SN - 2096-0433 SN - 2096-0662 VL - 8 IS - 3 SP - 445 EP - 465 PB - Springer Nature CY - London ER - TY - JOUR A1 - Irrgang, Anna M. A1 - Bendixen, Mette A1 - Farquharson, Louise M. A1 - Baranskaya, Alisa A1 - Erikson, Li H. A1 - Gibbs, Ann E. A1 - Ogorodov, Stanislav A. A1 - Overduin, Pier Paul A1 - Lantuit, Hugues A1 - Grigoriev, Mikhail N. A1 - Jones, Benjamin M. T1 - Drivers, dynamics and impacts of changing Arctic coasts JF - Nature reviews earth and environment N2 - Arctic coasts are vulnerable to the effects of climate change, including rising sea levels and the loss of permafrost, sea ice and glaciers. Assessing the influence of anthropogenic warming on Arctic coastal dynamics, however, is challenged by the limited availability of observational, oceanographic and environmental data. Yet, with the majority of permafrost coasts being erosive, coupled with projected intensification of erosion and flooding, understanding these changes is critical. In this Review, we describe the morphological diversity of Arctic coasts, discuss important drivers of coastal change, explain the specific sensitivity of Arctic coasts to climate change and provide an overview of pan-Arctic shoreline change and its multifaceted impacts. Arctic coastal changes impact the human environment by threatening coastal settlements, infrastructure, cultural sites and archaeological remains. Changing sediment fluxes also impact the natural environment through carbon, nutrient and pollutant release on a magnitude that remains difficult to predict. Increasing transdisciplinary and interdisciplinary collaboration efforts will build the foundation for identifying sustainable solutions and adaptation strategies to reduce future risks for those living on, working at and visiting the rapidly changing Arctic coast. Y1 - 2022 U6 - https://doi.org/10.1038/s43017-021-00232-1 SN - 2662-138X VL - 3 IS - 1 SP - 39 EP - 54 PB - Nature Research CY - London ER - TY - JOUR A1 - Izotov, Yuri I. A1 - Chisholm, John A1 - Worseck, Gábor A1 - Guseva, Natalia G. A1 - Schaerer, Daniel A1 - Prochaska, Jason Xavier T1 - Lyman alpha and Lyman continuum emission of Mg II-selected star-forming galaxies JF - Monthly notices of the Royal Astronomical Society N2 - We present observations with the Cosmic Origins Spectrograph onboard the Hubble Space Telescope of seven compact low-mass star-forming galaxies at redshifts, z, in the range 0.3161-0.4276, with various O3Mg2 = [O III] lambda 5007/Mg II lambda 2796+2803 and Mg-2 = Mg II lambda 2796/Mg II lambda 2803 emission-line ratios. We aim to study the dependence of leaking Lyman continuum (LyC) emission on the characteristics of Mg ii emission together with the dependencies on other indirect indicators of escaping ionizing radiation. LyC emission with escape fractions f(esc)(LyC) = 3.1-4.6 per cent is detected in four galaxies, whereas only 1 sigma upper limits of f(esc)(LyC) in the remaining three galaxies were derived. A strong narrow Ly alpha emission line with two peaks separated by V-sep similar to 298-592 km s(-1) was observed in four galaxies with detected LyC emission and very weak Ly alpha emission is observed in galaxies with LyC non-detections. Our new data confirm the tight anticorrelation between f(esc)(LyC) and V-sep found for previous low-redshift galaxy samples. V-sep remains the best indirect indicator of LyC leakage among all considered indicators. It is found that escaping LyC emission is detected predominantly in galaxies with Mg-2 greater than or similar to 1.3. A tendency of an increase of f(esc)(LyC) with increasing of both the O3Mg2 and Mg-2 is possibly present. However, there is substantial scatter in these relations not allowing their use for reliable prediction of f(esc)(LyC). KW - galaxies: abundances KW - galaxies: dwarf KW - galaxies: fundamental parameters KW - galaxies: ISM KW - galaxies: starburst KW - dark ages KW - reionization KW - first stars Y1 - 2022 U6 - https://doi.org/10.1093/mnras/stac1899 SN - 0035-8711 SN - 1365-2966 VL - 515 IS - 2 SP - 2864 EP - 2881 PB - Oxford University Press CY - Oxford ER - TY - THES A1 - Rogge, Franziska T1 - Multiprofessionelle Kooperation an inklusiven Schulen im Bundesland Brandenburg: Vorkommen, Profile, Auswirkungen N2 - Die Zusammenarbeit zwischen Lehr- und anderen Fachkräften stellt in Modellen inklusiver Schul- und Unterrichtsentwicklung sowie Schuleffektivität ein wichtiges Element dar. Wenngleich Kooperation als bedeutsam postuliert wird, so belegen Studien, dass diese bisher überwiegend in autonomieerhaltenden Formen praktiziert wird. Als entwicklungsförderlich gelten jedoch v.a. komplexere Formen der Zusammenarbeit. Vor dem Hintergrund inklusiver Bildung und dem Anspruch einer bestmöglichen individuellen Entwicklung der Schüler*innen stellt die Zusammenarbeit von Lehr- und Fachkräften folglich ein sehr bedeutsames Thema dar. Es ist zu hinterfragen, wie sich die Zusammenarbeit zwischen Lehr- und Fachkräften im Primar- wie Sekundarstufenbereich an inklusiven Schulen gestaltet, welche Faktoren diese beeinflussen und welche Relevanz die unterschiedlichen Formen der Zusammenarbeit im Prozess inklusiver Schulentwicklung einnehmen. Bestehende Forschungsdesiderata aufgrei-fend, fokussiert die vorliegende Dissertation auf die realisierte Zusammenarbeit von Lehr- und Fachkräften im Primar- und Sekundarstufenbereich inklusiver Schulen, am Beispiel des Landes Brandenburg. Neben den realisierten Formen der Zusammenarbeit, stehen insbesondere die Identifikation von Kooperationsmustern von Lehr- und Fachkräften sowie von Schulen, und deren Zusammenhänge mit der Leistungsentwicklung von Schüler*innen im Kern des Forschungsinteresses. Die vorliegende Dissertation bearbeitet insgesamt sechs Forschungsfragen, welche in drei Teilstudien adressiert werden: Zunächst werden mittels deskriptiver Analysen sowie Mehrebenenmodellierungen die Ausgangslage multiprofessioneller Kooperation (erste Forschungsfrage) sowie deren Rahmenbedingungen (zweite Forschungsfrage) im Primar- wie Sekundarstufenbereich erfasst (Teilstudie 1). Lehr- und Fachkräfte kooperierten überwiegend in autonomieerhaltenden, austauschbasierten Formen. Weiterhin zeigte sich, dass insbesondere die individuelle Offenheit zur Zusammenarbeit sowie die subjektiv wahrgenommene Unterstützung durch die Schulleitung bedeutsame Faktoren für die Realisierung multiprofessioneller Kooperation darstellten. Die Fragestellungen drei und vier befassen sich mit der Identifikation von Mustern im Kooperationsverhalten (Teilstudie 2). Zum einen geht es hierbei um personenbezogene Profile von Lehr- und Fachkräften (dritte Forschungsfrage), zum anderen um schulbezogene Profile (vierte Forschungsfrage), welche mittels des personenzentrierten Ansatzes der latenten Profilanalysen unter Berücksichtigung der Mehrebenenstruktur identifiziert werden. Hinsichtlich des individuellen Kooperationsverhaltens konnten vier Profile eruiert werden, bzgl. des schulspezifischen Kooperationsverhaltens drei. Die Mehrheit der Lehr- und Fachkräfte konnte im „regularly“-Profil verortet werden, d.h. nach eigener Einschätzung kooperierten diese überdurchschnittlich häufig im Austausch miteinander und arbeitsteilig, aber auch regelmäßig kokonstruktiv. Auf Schulebene zeigte sich, dass etwa jede zweite inklusive Schule im Land Brandenburg über eine hoch ausgeprägte Kooperationskultur verfügte. Im Fokus der Teilstudie 3 wird den Fragen nachgegangen, in welchem Zusammenhang die schulspezifischen Kooperationskulturen mit der Leistungsentwicklung von Schüler*innen in der Primar- wie Sekundarstufe steht. Mittels autoregressiver Mehrebenenanalysen wird einerseits der Zusammenhang mit der Leistungsentwicklung aller Schüler*innen (fünfte Forschungsfrage) untersucht, sowie spezifisch auf die Entwicklung von Schüler*innen mit und ohne sonderpädagogischem Förderbedarf (sechste Forschungsfrage) fokussiert. Ein zentrales Ergebnis war hierbei, dass Schüler*innen mit sonderpädagogischem Förderbedarf in der Primar- wie Sekundarstufe in ihrer Leistungsentwicklung am stärksten profitierten, wenn sie an Schulen lernten, an denen sich die Lehr- und Fachkräfte sehr regelmäßig über Lernstände der Schüler*innen austauschten (Austausch), Arbeitspakete für differenzierte Lernangebote erarbeiteten und verteilten (Arbeitsteilung) und darüber hinaus gelegentlich gemeinsam Problemlösungen entwickelten (Kokonstruktion). Die Ergebnisse werden vor dem Hintergrund der postulierten Relevanz multiprofessioneller Kooperation für inklusive Schul- und Unterrichtsentwicklungsprozesse eingeordnet und diskutiert. Weiterhin werden verschiedene praktische Implikationen für die Unterstützung multiprofessioneller Zusammenarbeit im Primar- und Sekundarstufenbereich abgeleitet. N2 - Collaboration between teachers and specialists is an important element in models of inclusive school and instructional development and school effectiveness. Although collaboration is postulated to be important, studies show that it has so far mainly been practised in autonomy-preserving forms. However, more complex forms of collaboration are considered to promote development. In the context of inclusive education and the demand for the best individual development of students, collaboration between teachers and specialists is therefore a very important aspect. It is necessary to analyse the extent to which collaboration between teachers and specialists in primary and secondary schools is realised in inclusive schools, which factors influence this and what relevance the different forms of collaboration have in the process of inclusive school development. Taking up existing research desiderata, this dissertation therefore focuses on the realised collaboration between teachers and specialists in primary and secondary inclusive schools, using the example of the federal state of Brandenburg. In addition to the realised forms of collaboration, the identification of cooperation patterns of teachers and specialists, but also of schools and their connections with the performance development of pupils are at the core of the research interest. This dissertation addresses a total of six research questions, which are addressed in three sub-studies: Firstly, descriptive analyses and multi-level modelling are used to record the initial situation of multi-professional collaboration (first research question) and its framework conditions (second research question) in primary and secondary education (sub-study 1). Teachers and specialists collaborated predominantly in autonomy-preserving, exchange-based forms. It was also shown that the individual openness to collaboration and the subjectively perceived support from the school management were especially important factors for the realisation of multi-professional collaboration. Questions three and four deal with the identification of pat-terns in cooperation behaviour (sub-study 2). On the one hand, this involves personal profiles of teachers and specialists (third research question) and, on the other hand, school-related profiles (fourth research question), which are identified using the person-centred approach of latent profile analyses, taking into account the multi-level structure. Four profiles were identified with regard to individual cooperation behaviour and three with regard to school-specific cooperation behaviour. The majority of teachers and specialists could be categorised in the "regularly" profile, i.e. according to their own assessment, they collaborated with each other more frequently than average in an exchange and division of labour, but also regularly in a co-constructive manner. At school level, it was found that around every second inclusive school in the state of Brandenburg has a highly developed culture of collaboration. Sub-study 3 focuses on the questions of how school-specific cultures of collaboration are related to the performance of pupils at primary and secondary level. Using autoregressive multi-level analyses, the correlation with the performance development of all pupils (fifth research question) is examined on the one hand, and specifically focussed on the development of pupils with and without special educational needs (sixth research question). A key finding here was that pupils with special educational needs at both primary and secondary level benefited most in terms of their performance development if they learnt at schools where teachers and specialists regularly exchanged information about the pupils' learning status (exchange), developed and distributed work packages for differentiated learning opportunities (division of labour) and also occasionally developed solutions to problems together (co-construction). The results are categorised and discussed against the background of the postulated relevance of multi-professional collaboration for inclusive school and lesson development processes. Furthermore, various practical implications for supporting multi-professional collaboration in primary and secondary education are derived. KW - multiprofessionelle Kooperation KW - Primar- und Sekundarstufe KW - latente Mehrebenen-Profilanalysen KW - (autoregressive) Mehrebenenanalysen KW - Leistungsentwicklung KW - inklusive Schulen KW - multiprofessional collaboration KW - primary and secondary schools KW - multilevel latent profile analyses KW - autoregressive multi-level analyses KW - performance development KW - inclusive schools Y1 - 2024 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-639190 ER - TY - JOUR A1 - Bereswill, Sarah A1 - Gatz-Miller, Hannah A1 - Su, Danyang A1 - Tötzke, Christian A1 - Kardjilov, Nikolay A1 - Oswald, Sascha A1 - Mayer, Klaus Ulrich T1 - Coupling non-invasive imaging and reactive transport modeling to investigate water and oxygen dynamics in the root zone JF - Vadose zone journal N2 - Oxygen (O-2) availability in soils is vital for plant growth and productivity. The transport and consumption of O-2 in the root zone is closely linked to soil moisture content, the spatial distribution of roots, as well as structure and heterogeneity of the surrounding soil. In this study, we measure three-dimensional root system architecture and the spatiotemporal dynamics of soil moisture (& theta;) and O-2 concentrations in the root zone of maize (Zea mays) via non-invasive imaging, and then construct and parameterize a reactive transport model based on the experimental data. The combination of three non-invasive imaging methods allowed for a direct comparison of simulation results with observations at high spatial and temporal resolution. In three different modeling scenarios, we investigated how the results obtained for different levels of conceptual complexity in the model were able to match measured & theta; and O-2 concentration patterns. We found that the modeling scenario that considers heterogeneous soil structure and spatial variability of hydraulic parameters (permeability, porosity, and van Genuchten & alpha; and n), better reproduced the measured & theta; and O-2 patterns relative to a simple model with a homogenous soil domain. The results from our combined imaging and modeling analysis reveal that experimental O-2 and water dynamics can be reproduced quantitatively in a reactive transport model, and that O-2 and water dynamics are best characterized when conditions unique to the specific system beyond the distribution of roots, such as soil structure and its effect on water saturation and macroscopic gas transport pathways, are considered. Y1 - 2023 U6 - https://doi.org/10.1002/vzj2.20268 SN - 1539-1663 VL - 22 IS - 5 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Vitagliano, Gerardo A1 - Hameed, Mazhar A1 - Jiang, Lan A1 - Reisener, Lucas A1 - Wu, Eugene A1 - Naumann, Felix T1 - Pollock: A Data Loading Benchmark JF - Proceedings of the VLDB Endowment N2 - Any system at play in a data-driven project has a fundamental requirement: the ability to load data. The de-facto standard format to distribute and consume raw data is CSV. Yet, the plain text and flexible nature of this format make such files often difficult to parse and correctly load their content, requiring cumbersome data preparation steps. We propose a benchmark to assess the robustness of systems in loading data from non-standard CSV formats and with structural inconsistencies. First, we formalize a model to describe the issues that affect real-world files and use it to derive a systematic lpollutionz process to generate dialects for any given grammar. Our benchmark leverages the pollution framework for the csv format. To guide pollution, we have surveyed thousands of real-world, publicly available csv files, recording the problems we encountered. We demonstrate the applicability of our benchmark by testing and scoring 16 different systems: popular csv parsing frameworks, relational database tools, spreadsheet systems, and a data visualization tool. Y1 - 2023 U6 - https://doi.org/10.14778/3594512.3594518 SN - 2150-8097 VL - 16 IS - 8 SP - 1870 EP - 1882 PB - Association for Computing Machinery CY - New York ER - TY - CHAP A1 - Yael, Attia A1 - Lapidot, Elad A1 - Tzuberi, Hannah T1 - 60 Years after the Algerian War BT - Interculturality in the Postcolonial Age N2 - Over the six decades since it officially ended, the Algerian War has become a key event for marking, retrospectively, the beginning of a new era in European, Western and global history. This new era is characterized by the proclaimed end of Western hegemony – by the proclaimed end of European history as global, universal history. This era, our era, understands itself as the time after the domination of the West, a time or multiple times of “post”: the time of postcolonialism, but also postmodernity, postsecularism, posthumanism. The times of “post” are characterized by a fundamental reconfiguration of the relations between European civilization and its Others, first and foremost by the proclaimed split between Europe and its Others, and more generally by the disintegration, disruption and dispersion of the – allegedly – unified space of culture, knowledge and discourse. The postcolonial era is an era of diversity and difference, an era of dispersions and diasporas, where the space of culture is a space of multiple cultures, a space of in-between, of “inter”: the space of the intercultural, but also the interreligious, interethnic, interracial and inter-epistemic. This conference will reflect on the “inter” in the time of “post”. We invited scholars, thinkers, intellectuals and artists to discuss various aspects and models of intercultural dynamics that have been developed and articulated in the aftermath of the Algerian War or of other events that marked the decline of Western hegemony, such as the Second Vatican, May 1968 or the Vietnam War. How did the age of decolonization reshape the discourse and practice of intercultural relations? To what extent interculturality itself is a sign or a site of decolonization? To what extent, on the contrary, intercultural relations may reproduce colonial or generate neocolonial patterns? Contributions examine the emergence of intercultural notions and practices in various intellectual traditions, European or non-European; the development of new categories and constellations of identity, otherness and dialogue; the interrelations between epistemic, cultural, discursive, religious and political aspects; as well as reactions to these new developments and various forms of critique and resistance. We are especially interested in how this reflection may shed light on socio-political and cultural phenomena, trends and concerns of the present time. Y1 - 2022 UR - https://intellectualdiaspora.org/de/culture-of-difference_culture-of-difference-interculturality-in-the-postcolonial-age/ PB - Katholische Akademie Berlin CY - Berlin ER - TY - JOUR A1 - Zakrzewski, Tanja T1 - Rezension zu: Poettering, Jorun: Migrating Merchants - Trade, Nation, and Religion in Seventeenth-Century Hamburg and Portugal . - Berlin: De Gryter, 2018. - 397 S. - ISBN: 978-3-11-047001-7 JF - Comparativ: Zeitschrift für Globalgeschichte und vergleichende Gesellschaftsforschung Y1 - 2022 UR - https://www.comparativ.net/v2/article/view/3241/2941 SN - 0940-3566 VL - 2 SP - 289 EP - 291 PB - Universitätsverlag CY - Leipzig ER -