TY - JOUR A1 - Dreymann, Nico A1 - Wuensche, Julia A1 - Sabrowski, Wiebke A1 - Moeller, Anja A1 - Czepluch, Denise A1 - Vu Van, Dana A1 - Füssel, Susanne A1 - Menger, Marcus M. T1 - Inhibition of Human Urokinase-Type Plasminogen Activator (uPA) Enzyme Activity and Receptor Binding by DNA Aptamers as Potential Therapeutics through Binding to the Different Forms of uPA JF - International journal of molecular sciences N2 - Urokinase-type plasminogen activator is widely discussed as a marker for cancer prognosis and diagnosis and as a target for cancer therapies. Together with its receptor, uPA plays an important role in tumorigenesis, tumor progression and metastasis. In the present study, systematic evolution of ligands by exponential enrichment (SELEX) was used to select single-stranded DNA aptamers targeting different forms of human uPA. Selected aptamers allowed the distinction between HMW-uPA and LMW-uPA, and therefore, presumably, have different binding regions. Here, uPAapt-02-FR showed highly affine binding with a K-D of 0.7 nM for HMW-uPA and 21 nM for LMW-uPA and was also able to bind to pro-uPA with a K-D of 14 nM. Furthermore, no cross-reactivity to mouse uPA or tissue-type plasminogen activator (tPA) was measured, demonstrating high specificity. Suppression of the catalytic activity of uPA and inhibition of uPAR-binding could be demonstrated through binding with different aptamers and several of their truncated variants. Since RNA aptamers are already known to inhibit uPA-uPAR binding and other pathological functions of the uPA system, these aptamers represent a novel, promising tool not only for detection of uPA but also for interfering with the pathological functions of the uPA system by additionally inhibiting uPA activity. KW - biomarker KW - cancer KW - cancer therapy KW - DNA aptamer KW - microscale thermophoresis (MST) KW - SELEX KW - surface plasmon resonance spectroscopy (SPR) KW - uPA KW - uPAR KW - urokinase Y1 - 2022 U6 - https://doi.org/10.3390/ijms23094890 SN - 1661-6596 SN - 1422-0067 VL - 23 IS - 9 PB - MDPI CY - Basel ER - TY - THES A1 - van der Veen, Iris T1 - Defining moisture sources and (palaeo)environmental conditions using isotope geochemistry in the NW Himalaya N2 - Anthropogenic climate change alters the hydrological cycle. While certain areas experience more intense precipitation events, others will experience droughts and increased evaporation, affecting water storage in long-term reservoirs, groundwater, snow, and glaciers. High elevation environments are especially vulnerable to climate change, which will impact the water supply for people living downstream. The Himalaya has been identified as a particularly vulnerable system, with nearly one billion people depending on the runoff in this system as their main water resource. As such, a more refined understanding of spatial and temporal changes in the water cycle in high altitude systems is essential to assess variations in water budgets under different climate change scenarios. However, not only anthropogenic influences have an impact on the hydrological cycle, but changes to the hydrological cycle can occur over geological timescales, which are connected to the interplay between orogenic uplift and climate change. However, their temporal evolution and causes are often difficult to constrain. Using proxies that reflect hydrological changes with an increase in elevation, we can unravel the history of orogenic uplift in mountain ranges and its effect on the climate. In this thesis, stable isotope ratios (expressed as δ2H and δ18O values) of meteoric waters and organic material are combined as tracers of atmospheric and hydrologic processes with remote sensing products to better understand water sources in the Himalayas. In addition, the record of modern climatological conditions based on the compound specific stable isotopes of leaf waxes (δ2Hwax) and brGDGTs (branched Glycerol dialkyl glycerol tetraethers) in modern soils in four Himalayan river catchments was assessed as proxies of the paleoclimate and (paleo-) elevation. Ultimately, hydrological variations over geological timescales were examined using δ13C and δ18O values of soil carbonates and bulk organic matter originating from sedimentological sections from the pre-Siwalik and Siwalik groups to track the response of vegetation and monsoon intensity and seasonality on a timescale of 20 Myr. I find that Rayleigh distillation, with an ISM moisture source, mainly controls the isotopic composition of surface waters in the studied Himalayan catchments. An increase in d-excess in the spring, verified by remote sensing data products, shows the significant impact of runoff from snow-covered and glaciated areas on the surface water isotopic values in the timeseries. In addition, I show that biomarker records such as brGDGTs and δ2Hwax have the potential to record (paleo-) elevation by yielding a significant correlation with the temperature and surface water δ2H values, respectively, as well as with elevation. Comparing the elevation inferred from both brGDGT and δ2Hwax, large differences were found in arid sections of the elevation transects due to an additional effect of evapotranspiration on δ2Hwax. A combined study of these proxies can improve paleoelevation estimates and provide recommendations based on the results found in this study. Ultimately, I infer that the expansion of C4 vegetation between 20 and 1 Myr was not solely dependent on atmospheric pCO2, but also on regional changes in aridity and seasonality from to the stable isotopic signature of the two sedimentary sections in the Himalaya (east and west). This thesis shows that the stable isotope chemistry of surface waters can be applied as a tool to monitor the changing Himalayan water budget under projected increasing temperatures. Minimizing the uncertainties associated with the paleo-elevation reconstructions were assessed by the combination of organic proxies (δ2Hwax and brGDGTs) in Himalayan soil. Stable isotope ratios in bulk soil and soil carbonates showed the evolution of vegetation influenced by the monsoon during the late Miocene, proving that these proxies can be used to record monsoon intensity, seasonality, and the response of vegetation. In conclusion, the use of organic proxies and stable isotope chemistry in the Himalayas has proven to successfully record changes in climate with increasing elevation. The combination of δ2Hwax and brGDGTs as a new proxy provides a more refined understanding of (paleo-)elevation and the influence of climate. N2 - Die Auswirkungen des menschgemachten Klimawandels wirken sich auch auf den Wasserkreislauf aus. Während manche Regionen höhere Niederschlagsmengen zu erwarten haben, werden andere mit stärkeren und häufigeren Trockenperioden zu konfrontiert sein. Diese Veränderungen haben einen unmittelbaren Einfluss auf Evaporation, Langzeit-Wasserreservoire, Grundwasserbildung, Schneefall und Gletscher. Da Gebirge und Hochplateaus überdurchschnittlich von den Auswirkungen des Klimawandels betroffen sind, ist die Wasserversorgung der Menschen entlang der dort entspringenden Flüsse gefährdet. Insbesondere der Himalaya gilt als instabile Region, dessen Abflüsse die Wasserversorgung von annähernd einer Milliarde Menschen gewährleisten. Um zu erwartende Veränderungen des Wasserbudgets in Abhängigkeit von verschiedenen möglichen Klimawandelszenarien abschätzen zu können, ist ein detaillierteres Verständnis des Wasserkreislaufs in Hochgebirgen und -plateaus erforderlich. Neben dem globalen Klimawandel gibt es weitere Faktoren, die sich auf den Wasserkreislauf auswirken. Das Wechselspiel zwischen Gebirgsbildung und klimatischen Bedingungen beeinflusst den Wasserkreislauf auf geologischen Zeitskalen. Entsprechende Veränderungen und ihre Auswirkungen lassen sich jedoch nur eingeschränkt bestimmen. Mittels geeigneter Proxies für höhenbedingte Änderungen der Hydrologie lassen sich der Orogeneseverlauf sowie dessen klimatische Auswirkungen allerdings genauer rekonstruieren. In der vorliegenden Arbeit werden die Verhältnisse stabiler Isotope (als δ2H und δ18O ausgedrückt) von meteorischen Wassern sowie von organischem Material mit Methoden der Satellitenfernerkundung als Indikator für atmosphärische und hydrologische Prozesse kombiniert, um ein besseres Verständnis der verschiedenen Wasserquellen des Himalaya zu erlangen. Darüber hinaus wurde der Link zwischen modernen klimatischen Bedingungen und verbindungsspezifischen stabilen Isotopen von Blattwachsen (δ2Hwax) sowie von brGDGTs (branched Glycerol dialkyl glycerol tetraethers) rezenter Bodenproben aus den Einzugsgebieten vierer Flüsse des Himalaya hergestellt, um sie als Paläo-Klima- und Paläo-Höhenproxy verwenden zu können. Zu guter Letzt wurden hydrologische Veränderungen auf einer Zeitskala von 20 Mio. Jahren anhand von δ13C- and δ18O-Werten von Bodencarbonat und organischem Material aus Sedimentschnitten der pre-Siwalik und Siwalik-Einheiten nachvollzogen. Die Erkenntnisse dieser tragen zu einer deutlich genaueren Rekonstruktion von Vegetationsänderungen und der Entwicklung der Monsun-Intensität sowie -Saisonalität bei. Die Isotopenzusammensetzung der Oberflächenwasser der untersuchten Flüsse wird hauptsächlich durch Rayleigh-Destillation der im Wesentlichen vom Indischen Sommer Monsun eingetragenen Feuchtigkeit bestimmt. Der durch Satellitenfernerkundungsdaten bestätigte Anstieg des Deuterium-Exzesses (d-excess) im Frühjahr verdeutlicht den signifikanten Einfluss von Schnee- und Gletscherschmelze, der auch in Zeitreihen von Oberflächenwasserproben erkennbar ist. Sowohl brGDGT als auch δ2Hwax können potentiell die absolute Höhe zum Zeitpunkt ihrer Synthese abbilden, da sie stark mit der Lufttemperatur, bzw. mit Oberflächenwasser δ2H und somit indirekt auch mit der Höhe korreliert sind. Im direkten Vergleich der mittels brGDGT und δ2Hwax rekonstruierten Höhen ergaben sich insbesondere in ariden Teilen der Höhenprofile große Unterschiede. Diese sind hauptsächlich auf verstärkte Evapotranspiration und deren Auswirkung auf Pflanzenwasser und -wachse zurückzuführen. Basierend auf den Erkenntnissen der vorliegenden Arbeit können weitere vergleichende Untersuchungen beider Proxies genauere Paläo-Höhenstudien ermöglichen. Diese Arbeit zeigt, dass die Isotopie von Oberflächenwassern genutzt werden kann, um den sich ändernden Wasserhaushalt des Himalya im Kontext voraussichtlich weiter ansteigender Temperaturen zu beobachten. Unsicherheiten bei der Rekonstruktion von Paläo-Höhen konnten durch eine vergleichende Analyse zweier organischer Proxies (δ2Hwax and brGDGTs) aus Paläo-Bodenproben des Himalayas minimiert werden. Verhältnisse stabiler Isotope von Blattwachsen aus diesen Bodenproben spiegeln die Entwicklung der Vegetation unter dem Einfluss des Monsuns im späten Miozän wider. Zusammenfassend wurde erfolgreich gezeigt, dass organische Proxies und stabile Isotope höhenabhängige Änderungen des Klimas im Himalaya aufzeichnen können. Die Kombination von δ2Hwax and brGDGTs als neuer Proxy ermöglicht eine deutlich differenziertere Betrachtung von rekonstruierten Paläo-Höhen sowie Paläo-Klima. KW - stable isotope KW - Himalaya KW - n-alkanes KW - d-excess KW - biomarker KW - paleohydrology KW - GDGT KW - GDGT KW - Himalaya KW - Biomarker KW - Deuterium Exzesses KW - n-alkane KW - Paläohydrologie KW - stabilen Isotopen Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-514397 ER - TY - JOUR A1 - Liu, Qi A1 - Adler, Karsten A1 - Lipus, Daniel A1 - Kämpf, Horst A1 - Bussert, Robert A1 - Plessen, Birgit A1 - Schulz, Hans-Martin A1 - Krauze, Patryk A1 - Horn, Fabian A1 - Wagner, Dirk A1 - Mangelsdorf, Kai A1 - Alawi, Mashal T1 - Microbial signatures in deep CO2-saturated miocene sediments of the active Hartousov mofette system (NW Czech Republic) JF - Frontiers in microbiology N2 - The Hartousov mofette system is a natural CO2 degassing site in the central Cheb Basin (Eger Rift, Central Europe). In early 2016 a 108 m deep core was obtained from this system to investigate the impact of ascending mantle-derived CO2 on indigenous deep microbial communities and their surrounding life habitat. During drilling, a CO2 blow out occurred at a depth of 78.5 meter below surface (mbs) suggesting a CO2 reservoir associated with a deep low-permeable CO2-saturated saline aquifer at the transition from Early Miocene terrestrial to lacustrine sediments. Past microbial communities were investigated by hopanoids and glycerol dialkyl glycerol tetraethers (GDGTs) reflecting the environmental conditions during the time of deposition rather than showing a signal of the current deep biosphere. The composition and distribution of the deep microbial community potentially stimulated by the upward migration of CO2 starting during Mid Pleistocene time was investigated by intact polar lipids (IPLs), quantitative polymerase chain reaction (qPCR), and deoxyribonucleic acid (DNA) analysis. The deep biosphere is characterized by microorganisms that are linked to the distribution and migration of the ascending CO2-saturated groundwater and the availability of organic matter instead of being linked to single lithological units of the investigated rock profile. Our findings revealed high relative abundances of common soil and water bacteria, in particular the facultative, anaerobic and potential iron-oxidizing Acidovorax and other members of the family Comamonadaceae across the whole recovered core. The results also highlighted the frequent detection of the putative sulfate-oxidizing and CO2-fixating genus Sulfuricurvum at certain depths. A set of new IPLs are suggested to be indicative for microorganisms associated to CO2 accumulation in the mofette system. KW - geo-bio interaction KW - CO2 KW - mofette systems KW - Eger Rift KW - microbial lipid KW - biomarker KW - microbial diversity KW - deep biosphere KW - saline groundwater Y1 - 2020 U6 - https://doi.org/10.3389/fmicb.2020.543260 SN - 1664-302X VL - 11 PB - Frontiers Media CY - Lausanne ER - TY - THES A1 - Menges, Johanna T1 - Organic Carbon Storage, Transfer and Transformation in the Himalaya BT - insights from the Kali Gandaki Valley in Central Nepal N2 - The transfer of particulate organic carbon from continents to the ocean is an important component of the global carbon cycle. Transfer to and burial of photosynthetically fixed biospheric organic carbon in marine sediments can effectively sequester atmospheric carbon dioxide over geological timescales. The exhumation and erosion of fossil organic carbon contained in sedimentary rocks, i.e. petrogenic carbon, can result in remineralization, releasing carbon to the atmosphere. In contrast, eroded petrogenic organic carbon that gets transferred back to the ocean and reburied does not affect atmospheric carbon content. Mountain ranges play a key role in this transfer since they can source vast amounts of sediment including particulate organic carbon. Globally, the export of both, biospheric and petrogenic organic carbon has been linked to sediment export. Additionally, short transfer times from mountains to the ocean and high sediment concentrations have been shown to increase the likelihood of organic carbon burial. While the importance of mountain ranges in the organic carbon cycle is now widely recognized, the processes acting within mountain ranges to influence the storage, cycling and mobilization of organic carbon, as well as carbon fluxes from mountain ranges remain poorly constrained. In this thesis, I employ different methods to assess the nature and fate of particulate organic carbon in mountain belts, ranging from the molecular to regional landscape scale. These studies are located along the Trans-Himalayan Kali Gandaki River in Central Nepal. This river traverses all major geological and climatic zones of the Himalaya, from the dry northern Tibetan plateau to the high-relief, monsoon dominated steep High Himalaya and the lower relief and abundant vegetation of the Lesser Himalayan region. First, I document how biospheric organic matter has accumulated during the Holocene in the headwaters of the Kali Gandaki River valley, by combining compound specific isotope measurements with different dating methods and grain size data, and investigate the stability of this organic carbon reservoir on millennial timescales. I show, that around 1.6 ka an eco-geomorphic tipping point occurred leading to a destabilization of the landscape resulting in today’s high erosion rates and the excavation of the aged organic carbon reservoir. This study highlights the climatic and geomorphic controls on biospheric organic carbon storage and release from mountain ranges. Second, I systematically investigate the spatial variation of particulate organic carbon fluxes across the Himalaya along the Kali Gandaki River, using bulk stable and radioactive isotopes combined with a new Bayesian modeling approach. The detailed dataset allows the distinction of aged and modern biospheric organic carbon as well as petrogenic organic carbon across the Himalayan mountain range and the investigation of the role of climatic and geomorphic factors in their riverine export. The data suggest a decoupling of the particulate organic carbon from the sediment yield along the Kali Gandaki River, partially driven by climatic and geomorphic processes. In contrast to the suspended sediment, a large part of the particulate organic carbon exported by the river originates from the Tibetan part of the catchment and is dominated by petrogenic organic carbon derived from Jurassic shales with only minor contributions of modern and aged biospheric organic carbon. These findings emphasize the importance of organic carbon source distribution and erosion mechanisms in determining the organic carbon export from mountain ranges. In a third step, I explore the potential of ultra-high resolution mass spectrometry for particulate organic carbon transport studies. I have generated a novel and unprecedented high-resolution molecular dataset, which contains up to 103 molecular formulas of the lipid fraction of particulate organic matter for modern and aged biospheric carbon, petrogenic organic carbon and river sediments. First, I test if this dataset can be used to better resolve different organic carbon sources and to identify new geochemical tracers. Using multivariate statistics, I identify up to 10² characteristic molecular formulas for the major organic carbon sources in the upper part of the Kali Gandaki catchment, and trace their transfer from the surrounding landscape into the river sediment. Second, I test the potential of the molecular dataset to trace molecular transformations along source-to-sink pathways. I identify changes in molecular metrics derived from the dataset, which are characteristic of transformation processes during incorporation of litter into soil, the aging of soil material, and the mobilization of the organic carbon into the river. These two studies demonstrate that high-resolution molecular datasets open a promising analytical window on particulate organic carbon and can provide novel insights into the composition, sourcing and transformation of riverine particulate organic carbon. Collectively, these studies advance our understanding of the processes contributing to the storage and mobilization of organic carbon in the Central Himalaya, the mountain belt that dominates global erosional fluxes. They do so by identifying the major sources of particulate organic carbon to the Trans-Himalayan Kali Gandaki River, by elucidating their sensitivity to climate and geomorphic processes, and by identifying some of the transformations of this material on the molecular scale. As a result, the thesis demonstrates that the amount and composition of organic carbon routed from mountain belts is a function of the dynamic interactions of geologic, biologic, geomorphic and climatic processes within the mountain belt. This understanding will ultimately help in answering whether the build-up and erosion of mountain ranges over geological time represents a net carbon source or sink to the atmosphere. Beyond this, the thesis contributes to our technical ability to characterize organic matter and attribute it to sources by scoping the potential of high-end molecular analysis. KW - organic carbon cycle KW - biomarker KW - isotopes KW - Himalaya KW - rivers Y1 - 2020 ER - TY - JOUR A1 - Alker, Wiebke A1 - Schwerdtle, Tanja A1 - Schomburg, Lutz A1 - Haase, Hajo T1 - A Zinpyr-1-based Fluorimetric Microassay for Free Zinc in Human Serum JF - International journal of molecular sciences N2 - Zinc is an essential trace element, making it crucial to have a reliable biomarker for evaluating an individual’s zinc status. The total serum zinc concentration, which is presently the most commonly used biomarker, is not ideal for this purpose, but a superior alternative is still missing. The free zinc concentration, which describes the fraction of zinc that is only loosely bound and easily exchangeable, has been proposed for this purpose, as it reflects the highly bioavailable part of serum zinc. This report presents a fluorescence-based method for determining the free zinc concentration in human serum samples, using the fluorescent probe Zinpyr-1. The assay has been applied on 154 commercially obtained human serum samples. Measured free zinc concentrations ranged from 0.09 to 0.42 nM with a mean of 0.22 ± 0.05 nM. It did not correlate with age or the total serum concentrations of zinc, manganese, iron or selenium. A negative correlation between the concentration of free zinc and total copper has been seen for sera from females. In addition, the free zinc concentration in sera from females (0.21 ± 0.05 nM) was significantly lower than in males (0.23 ± 0.06 nM). The assay uses a sample volume of less than 10 µL, is rapid and cost-effective and allows us to address questions regarding factors influencing the free serum zinc concentration, its connection with the body’s zinc status, and its suitability as a future biomarker for an individual’s zinc status. KW - zinc KW - free zinc KW - serum KW - biomarker KW - fluorescent probe KW - Zinypr-1 Y1 - 2019 U6 - https://doi.org/10.3390/ijms20164006 SN - 1661-6596 SN - 1422-0067 VL - 20 IS - 16 PB - MDPI CY - Basel ER - TY - JOUR A1 - Aichner, Bernhard A1 - Makhmudov, Zafar A1 - Rajabov, Iljomjon A1 - Zhang, Qiong A1 - Pausata, Francesco Salvatore R. A1 - Werner, Martin A1 - Heinecke, Liv A1 - Kuessner, Marie L. A1 - Feakins, Sarah J. A1 - Sachse, Dirk A1 - Mischke, Steffen T1 - Hydroclimate in the Pamirs Was Driven by Changes in Precipitation-Evaporation Seasonality Since theLast Glacial Period JF - Geophysical research letters N2 - The Central Asian Pamir Mountains (Pamirs) are a high-altitude region sensitive to climatic change, with only few paleoclimatic records available. To examine the glacial-interglacial hydrological changes in the region, we analyzed the geochemical parameters of a 31-kyr record from Lake Karakul and performed a set of experiments with climate models to interpret the results. delta D values of terrestrial biomarkers showed insolation-driven trends reflecting major shifts of water vapor sources. For aquatic biomarkers, positive delta D shifts driven by changes in precipitation seasonality were observed at ca. 31-30, 28-26, and 17-14 kyr BP. Multiproxy paleoecological data and modelling results suggest that increased water availability, induced by decreased summer evaporation, triggered higher lake levels during those episodes, possibly synchronous to northern hemispheric rapid climate events. We conclude that seasonal changes in precipitation-evaporation balance significantly influenced the hydrological state of a large waterbody such as Lake Karakul, while annual precipitation amount and inflows remained fairly constant. KW - climate KW - biomarker KW - geochemistry KW - modelling KW - paleoclimate KW - hydrology Y1 - 2019 U6 - https://doi.org/10.1029/2019GL085202 SN - 0094-8276 SN - 1944-8007 VL - 46 IS - 23 SP - 13972 EP - 13983 PB - American Geophysical Union CY - Washington ER - TY - GEN A1 - Alker, Wiebke A1 - Schwerdtle, Tanja A1 - Schomburg, Lutz A1 - Haase, Hajo T1 - A Zinpyr-1-based fluorimetric microassay for free zinc in human serum T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Zinc is an essential trace element, making it crucial to have a reliable biomarker for evaluating an individual’s zinc status. The total serum zinc concentration, which is presently the most commonly used biomarker, is not ideal for this purpose, but a superior alternative is still missing. The free zinc concentration, which describes the fraction of zinc that is only loosely bound and easily exchangeable, has been proposed for this purpose, as it reflects the highly bioavailable part of serum zinc. This report presents a fluorescence-based method for determining the free zinc concentration in human serum samples, using the fluorescent probe Zinpyr-1. The assay has been applied on 154 commercially obtained human serum samples. Measured free zinc concentrations ranged from 0.09 to 0.42 nM with a mean of 0.22 ± 0.05 nM. It did not correlate with age or the total serum concentrations of zinc, manganese, iron or selenium. A negative correlation between the concentration of free zinc and total copper has been seen for sera from females. In addition, the free zinc concentration in sera from females (0.21 ± 0.05 nM) was significantly lower than in males (0.23 ± 0.06 nM). The assay uses a sample volume of less than 10 µL, is rapid and cost-effective and allows us to address questions regarding factors influencing the free serum zinc concentration, its connection with the body’s zinc status, and its suitability as a future biomarker for an individual’s zinc status. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1086 KW - zinc KW - free zinc KW - serum KW - biomarker KW - fluorescent probe KW - Zinypr-1 Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-472833 SN - 1866-8372 IS - 1086 ER - TY - THES A1 - Kochlik, Bastian Max T1 - Relevance of biomarkers for the diagnosis of the frailty syndrome T1 - Die Bedeutung von Biomarkern für die Diagnose des Frailty-Syndroms BT - focus on parameters of muscle protein turnover, micronutrients and oxidative stress BT - 3-Methylhistidine, Mikronährstoffe und oxidativer Stress im Fokus N2 - Frailty and sarcopenia share some underlying characteristics like loss of muscle mass, low muscle strength, and low physical performance. Imaging parameters and functional examinations mainly assess frailty and sarcopenia criteria; however, these measures can have limitations in clinical settings. Therefore, finding suitable biomarkers that reflect a catabolic muscle state e.g. an elevated muscle protein turnover as suggested in frailty, are becoming more relevant concerning frailty diagnosis and risk assessment. 3-Methylhistidine (3-MH) and its ratios 3-MH-to-creatinine (3-MH/Crea) and 3 MH-to-estimated glomerular filtration rate (3-MH/eGFR) are under discussion as possible biomarkers for muscle protein turnover and might support the diagnosis of frailty. However, there is some skepticism about the reliability of 3-MH measures since confounders such as meat and fish intake might influence 3-MH plasma concentrations. Therefore, the influence of dietary habits and an intervention with white meat on plasma 3-MH was determined in young and healthy individuals. In another study, the cross-sectional associations of plasma 3-MH, 3-MH/Crea and 3-MH/eGFR with the frailty status (robust, pre-frail and frail) were investigated. Oxidative stress (OS) is a possible contributor to frailty development, and high OS levels as well as low micronutrient levels are associated with the frailty syndrome. However, data on simultaneous measures of OS biomarkers together with micronutrients are lacking in studies including frail, pre-frail and robust individuals. Therefore, cross-sectional associations of protein carbonyls (PrCarb), 3-nitrotyrosine (3-NT) and several micronutrients with the frailty status were determined. A validated UPLC-MS/MS (ultra-performance liquid chromatography tandem mass spectrometry) method for the simultaneous quantification of 3-MH and 1-MH (1 methylhistidine, as marker for meat and fish consumption) was presented and used for further analyses. Omnivores showed higher plasma 3-MH and 1-MH concentrations than vegetarians and a white meat intervention resulted in an increase in plasma 3-MH, 3 MH/Crea, 1-MH and 1-MH/Crea in omnivores. Elevated 3-MH and 3-MH/Crea levels declined significantly within 24 hours after this white meat intervention. Thus, 3-MH and 3-MH/Crea might be used as biomarker for muscle protein turnover when subjects did not consume meat 24 hours prior to blood samplings. Plasma 3-MH, 3-MH/Crea and 3-MH/eGFR were higher in frail individuals than in robust individuals. Additionally, these biomarkers were positively associated with frailty in linear regression models, and higher odds to be frail were found for every increase in 3 MH and 3-MH/eGFR quintile in multivariable logistic regression models adjusted for several confounders. This was the first study using 3-MH/eGFR and it is concluded that plasma 3-MH, 3-MH/Crea and 3-MH/eGFR might be used to identify frail individuals or individuals at higher risk to be frail, and that there might be threshold concentrations or ratios to support these diagnoses. Higher vitamin D3, lutein/zeaxanthin, γ-tocopherol, α-carotene, β-carotene, lycopene and β-cryptoxanthin concentrations and additionally lower PrCarb concentrations were found in robust compared to frail individuals in multivariate linear models. Frail subjects had higher odds to be in the lowest than in the highest tertile for vitamin D3 α-tocopherol, α-carotene, β-carotene, lycopene, lutein/zeaxanthin, and β cryptoxanthin, and had higher odds to be in the highest than in the lowest tertile for PrCarb than robust individuals in multivariate logistic regression models. Thus, a low micronutrient together with a high PrCarb status is associated with pre-frailty and frailty. N2 - Gebrechlichkeit (englisch: frailty) und Sarkopenie teilen einige zugrundeliegende Merkmale wie einen Verlust von Muskelmasse, eine geringe Muskelkraft und eine geringe körperliche Leistungsfähigkeit, welche durch einen erhöhten Muskelproteinumsatz entstehen können. Kriterien der Gebrechlichkeit und Sarkopenie werden hauptsächlich durch bildgebende Verfahren sowie funktionelle Untersuchungen gemessen, die in ihrer Durchführbarkeit im klinischen Alltag jedoch eingeschränkt sein können. Daher gewinnt das Finden geeigneter Biomarker zur Anzeige eines erhöhten Muskelproteinumsatzes (kataboler Muskelzustand) in Bezug auf Diagnose und Risikobewertung der Gebrechlichkeit zunehmend an Bedeutung. 3-Methylhistidin (3-MH) und die Verhältnisse 3-MH zu Kreatinin (3-MH/Crea) und 3-MH zu geschätzter glomerulärer Filtrationsrate (3-MH/eGFR) werden als solche möglichen Biomarker diskutiert und könnten folglich die Diagnose und Risikobewertung von Gebrechlichkeit unterstützen. Es herrscht jedoch eine gewisse Skepsis hinsichtlich der Zuverlässigkeit von 3-MH-Messungen, da 3-MH-Plasmakonzentrationen durch Fleisch- und Fischaufnahme beeinflusst werden können. Daher wurde der Einfluss von Ernährungsgewohnheiten (Mischkost oder vegetarisch) und einer Intervention mit Hähnchenfleisch auf Plasma-3-MH bei jungen und gesunden Personen untersucht. In einer weiteren Studie wurden die Querschnittsassoziationen von 3-MH, 3-MH/Crea und 3-MH/eGFR im Plasma mit dem Frailty-Status (robust, pre-frail und frail) untersucht. Oxidativer Stress (OS) ist ein potentieller Faktor der zur Entwicklung von Gebrechlichkeit beiträgt, und sowohl hohe OS-Konzentrationen als auch niedrige Mikronährstoffkonzentrationen sind mit Gebrechlichkeit assoziiert. Daten zu simultanen Messungen von OS und Mikronährstoffen in Personen aller drei Frailty-Kategorien (robust, pre-frail und frail) fehlen jedoch. Aus diesem Grund wurden Querschnittsassoziationen von Proteincarbonylen (PrCarb), 3-Nitrotyrosin (3-NT) und mehrerer fettlöslicher Mikronährstoffe mit dem Frailty-Status bestimmt. Eine validierte UPLC-MS/MS-Methode (ultra-performance liquid chromatography tandem mass spectrometry) zur simultanen Bestimmung von 3-MH und 1-MH (1 Methylhistidin als Marker für den Fleisch- und Fischkonsum) in Plasma wurde beschrieben und für die weiteren Analysen verwendet. Mischköstler wiesen höhere 3 MH- und 1-MH-Konzentrationen in Plasma auf als Vegetarier. Die Intervention mit Hähnchenfleisch führte zu einem Anstieg von Plasma 3-MH, 3-MH/Crea, 1-MH und 1 MH/Crea bei Mischköstlern. Diese erhöhten 3-MH- und 3-MH/Crea-Spiegel sanken innerhalb von 24 Stunden nach der Intervention signifikant ab. Folglich stellen 3-MH und 3-MH/Crea potentielle Biomarker für den Muskelproteinumsatz dar, wenn Personen für 24 Stunden vor der Blutentnahme kein Fleisch verzehrt haben. Gebrechliche Teilnehmer wiesen höhere Plasma 3-MH-, 3-MH/Crea- und 3 MH/eGFR-Werte auf als robuste Teilnehmer und zusätzlich waren diese Biomarker in linearen Regressionsmodellen positiv mit Gebrechlichkeit assoziiert. In multivariablen logistischen Regressionsmodellen (adjustiert für mehrere Confounder) waren gebrechliche Personen im Vergleich zu robusten Personen mit einer höheren Wahrscheinlichkeit in einer höheren 3-MH- und 3-MH/eGFR-Quintile. Diese erste Studie, die 3-MH/eGFR als Biomarker für Gebrechlichkeit untersucht hat, erlaubt die Schlussfolgerung, dass Plasma-3-MH, -3-MH/Crea und -3-MH/eGFR verwendet werden könnte, um gebrechliche Personen oder Personen mit einem erhöhten Frailty-Risiko zu identifizieren. Möglicherweise gibt es auch Schwellenwerte, die diese Diagnosen unterstützen können. In multivariaten Regressionsanalysen wiesen robuste Personen höhere Vitamin D3-, Lutein/Zeaxanthin-, γ-Tocopherol-, α-Carotin-, β-Carotin-, Lycopin- und β Cryptoxanthin-Konzentrationen sowie niedrigere PrCarb-Konzentrationen auf als gebrechliche Personen. Zudem waren in multinomialen logistischen Regressionsanalysen gebrechliche Personen mit einer höheren Wahrscheinlichkeit sowohl in der niedrigsten Vitamin D3-, α-Tocopherol-, α-Carotin-, β-Carotin-, Lycopin-, Lutein/Zeaxanthin- und β Cryptoxanthin-Tertil als auch im höchsten PrCarb-Tertil zu finden als robuste Personen. Es wird daher geschlussfolgert, dass niedrige Mikronährstoffkonzentrationen zusammen mit hohen PrCarb-Konzentrationen mit Gebrechlichkeit und dessen Vorstufe (pre-frailty) assoziiert sind. KW - biomarker KW - Biomarker KW - frailty KW - Frailty KW - micronutrients KW - Mikronährstoffe KW - oxidative stress KW - oxidativer Stress KW - 3-methylhistidine KW - 3-Methylhistidin KW - muscle protein turnover KW - Muskelproteinumsatz Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-441186 ER - TY - JOUR A1 - Schulze, Sven A1 - Wehrhold, Michel A1 - Hille, Carsten T1 - Femtosecond-Pulsed laser written and etched fiber bragg gratings for fiber-optical biosensing JF - Sensors N2 - We present the development of a label-free, highly sensitive fiber-optical biosensor for online detection and quantification of biomolecules. Here, the advantages of etched fiber Bragg gratings (eFBG) were used, since they induce a narrowband Bragg wavelength peak in the reflection operation mode. The gratings were fabricated point-by-point via a nonlinear absorption process of a highly focused femtosecond-pulsed laser, without the need of prior coating removal or specific fiber doping. The sensitivity of the Bragg wavelength peak to the surrounding refractive index (SRI), as needed for biochemical sensing, was realized by fiber cladding removal using hydrofluoric acid etching. For evaluation of biosensing capabilities, eFBG fibers were biofunctionalized with a single-stranded DNA aptamer specific for binding the C-reactive protein (CRP). Thus, the CRP-sensitive eFBG fiber-optical biosensor showed a very low limit of detection of 0.82 pg/L, with a dynamic range of CRP detection from approximately 0.8 pg/L to 1.2 mu g/L. The biosensor showed a high specificity to CRP even in the presence of interfering substances. These results suggest that the proposed biosensor is capable for quantification of CRP from trace amounts of clinical samples. In addition, the adaption of this eFBG fiber-optical biosensor for detection of other relevant analytes can be easily realized. KW - fiber Bragg gratings KW - ultra-fast laser inscription KW - fiber etching KW - nanostructure fabrication KW - fiber-optical sensors KW - aptamers KW - C-reactive protein KW - biomarker Y1 - 2018 U6 - https://doi.org/10.3390/s18092844 SN - 1424-8220 VL - 18 IS - 9 PB - MDPI CY - Basel ER - TY - JOUR A1 - Stoessel, Daniel A1 - Schulte, Claudia A1 - dos Santos, Marcia C. Teixeira A1 - Scheller, Dieter A1 - Rebollo-Mesa, Irene A1 - Deuschle, Christian A1 - Walther, Dirk A1 - Schauer, Nicolas A1 - Berg, Daniela A1 - da Costa, Andre Nogueira A1 - Maetzler, Walter T1 - Promising Metabolite Profiles in the Plasma and CSF of Early Clinical JF - Frontiers in Aging Neuroscience N2 - Parkinson's disease (PD) shows high heterogeneity with regard to the underlying molecular pathogenesis involving multiple pathways and mechanisms. Diagnosis is still challenging and rests entirely on clinical features. Thus, there is an urgent need for robust diagnostic biofluid markers. Untargeted metabolomics allows establishing low-molecular compound biomarkers in a wide range of complex diseases by the measurement of various molecular classes in biofluids such as blood plasma, serum, and cerebrospinal fluid (CSF). Here, we applied untargeted high-resolution mass spectrometry to determine plasma and CSF metabolite profiles. We semiquantitatively determined small-molecule levels (<= 1.5 kDa) in the plasma and CSF from early PD patients (disease duration 0-4 years; n = 80 and 40, respectively), and sex-and age-matched controls (n = 76 and 38, respectively). We performed statistical analyses utilizing partial least square and random forest analysis with a 70/30 training and testing split approach, leading to the identification of 20 promising plasma and 14 CSF metabolites. The semetabolites differentiated the test set with an AUC of 0.8 (plasma) and 0.9 (CSF). Characteristics of the metabolites indicate perturbations in the glycerophospholipid, sphingolipid, and amino acid metabolism in PD, which underscores the high power of metabolomic approaches. Further studies will enable to develop a potential metabolite-based biomarker panel specific for PD KW - biomarker KW - untargeted metabolomics KW - neurodegeneration KW - plasma KW - CSF KW - machinelearning Y1 - 2018 U6 - https://doi.org/10.3389/fnagi.2018.00051 SN - 1663-4365 VL - 10 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Stoessel, Daniel A1 - Stellmann, Jan-Patrick A1 - Willing, Anne A1 - Behrens, Birte A1 - Rosenkranz, Sina C. A1 - Hodecker, Sibylle C. A1 - Stuerner, Klarissa H. A1 - Reinhardt, Stefanie A1 - Fleischer, Sabine A1 - Deuschle, Christian A1 - Maetzler, Walter A1 - Berg, Daniela A1 - Heesen, Christoph A1 - Walther, Dirk A1 - Schauer, Nicolas A1 - Friese, Manuel A. A1 - Pless, Ole T1 - Metabolomic Profiles for Primary Progressive Multiple Sclerosis Stratification and Disease Course Monitoring JF - Frontiers in human neuroscienc N2 - Primary progressive multiple sclerosis (PPMS) shows a highly variable disease progression with poor prognosis and a characteristic accumulation of disabilities in patients. These hallmarks of PPMS make it difficult to diagnose and currently impossible to efficiently treat. This study aimed to identify plasma metabolite profiles that allow diagnosis of PPMS and its differentiation from the relapsing remitting subtype (RRMS), primary neurodegenerative disease (Parkinson’s disease, PD), and healthy controls (HCs) and that significantly change during the disease course and could serve as surrogate markers of multiple sclerosis (MS)-associated neurodegeneration over time. We applied untargeted high-resolution metabolomics to plasma samples to identify PPMS-specific signatures, validated our findings in independent sex- and age-matched PPMS and HC cohorts and built discriminatory models by partial least square discriminant analysis (PLS-DA). This signature was compared to sex- and age-matched RRMS patients, to patients with PD and HC. Finally, we investigated these metabolites in a longitudinal cohort of PPMS patients over a 24-month period. PLS-DA yielded predictive models for classification along with a set of 20 PPMS-specific informative metabolite markers. These metabolites suggest disease-specific alterations in glycerophospholipid and linoleic acid pathways. Notably, the glycerophospholipid LysoPC(20:0) significantly decreased during the observation period. These findings show potential for diagnosis and disease course monitoring, and might serve as biomarkers to assess treatment efficacy in future clinical trials for neuroprotective MS therapies. KW - untargeted metabolomics KW - biomarker KW - PPMS KW - MS neurodegeneration KW - LysoPC(20:0) Y1 - 2018 U6 - https://doi.org/10.3389/fnhum.2018.00226 SN - 1662-5161 VL - 12 PB - Frontiers Research Foundation CY - Lausanne ER - TY - THES A1 - Stößel, Daniel T1 - Biomarker Discovery in Multiple Sclerosis and Parkinson’s disease T1 - Biomarkerentwicklung in Multiple Sklerose und der Parkinson-Krankheit BT - novel insights into metabolic disease mechanisms N2 - Neuroinflammatory and neurodegenerative diseases such as Parkinson's (PD) and multiple sclerosis (MS) often result in a severe impairment of the patient´s quality of life. Effective therapies for the treatment are currently not available, which results in a high socio-economic burden. Due to the heterogeneity of the disease subtypes, stratification is particularly difficult in the early phase of the disease and is mainly based on clinical parameters such as neurophysiological tests and central nervous imaging. Due to good accessibility and stability, blood and cerebrospinal fluid metabolite markers could serve as surrogates for neurodegenerative processes. This can lead to an improved mechanistic understanding of these diseases and further be used as "treatment response" biomarkers in preclinical and clinical development programs. Therefore, plasma and CSF metabolite profiles will be identified that allow differentiation of PD from healthy controls, association of PD with dementia (PDD) and differentiation of PD subtypes such as akinetic rigid and tremor dominant PD patients. In addition, plasma metabolites for the diagnosis of primary progressive MS (PPMS) should be investigated and tested for their specificity to relapsing-remitting MS (RRMS) and their development during PPMS progression. By applying untargeted high-resolution metabolomics of PD patient samples and in using random forest and partial least square machine learning algorithms, this study identified 20 plasma metabolites and 14 CSF metabolite biomarkers. These differentiate against healthy individuals with an AUC of 0.8 and 0.9 in PD, respectively. We also identify ten PDD specific serum metabolites, which differentiate against healthy individuals and PD patients without dementia with an AUC of 1.0, respectively. Furthermore, 23 akinetic-rigid specific plasma markers were identified, which differentiate against tremor-dominant PD patients with an AUC of 0.94 and against healthy individuals with an AUC of 0.98. These findings also suggest more severe disease pathology in the akinetic-rigid PD than in tremor dominant PD. In the analysis of MS patient samples a partial least square analysis yielded predictive models for the classification of PPMS and resulted in 20 PPMS specific metabolites. In another MS study unknown changes in human metabolism were identified after administration of the multiple sclerosis drug dimethylfumarate, which is used for the treatment of RRMS. These results allow to describe and understand the hitherto completely unknown mechanism of action of this new drug and to use these findings for the further development of new drugs and targets against RRMS. In conclusion, these results have the potential for improved diagnosis of these diseases and improvement of mechanistic understandings, as multiple deregulated pathways were identified. Moreover, novel Dimethylfumarate targets can be used to aid drug development and treatment efficiency. Overall, metabolite profiling in combination with machine learning identified as a promising approach for biomarker discovery and mode of action elucidation. N2 - Neuroinflammatorische and neurodegenerative Erkrankungen wie Parkinson (PD) und Multiple Sklerose (MS) gehen oft mit einer starken Beeinträchtigung der Lebensqualität einher. Effektive Therapien für die Behandlung sind derzeit nicht verfügbar, was nicht zuletzt eine hohe sozioökonomische Last zur Folge hat. Aufgrund der Heterogenität der Krankheitsbilder ist eine Stratifizierung gerade in der Frühphase der Erkrankung schwierig und basiert hauptsächlich auf klinischen Parametern wie bspw. neurophysiologischen Tests und bildgebenden Verfahren. Aufgrund ihrer guten Zugänglichkeit und Stabilität könnten bestimmte Blut- und Liquor-Metabolitenmarker als Surrogat für neurodegenerative Prozesse dienen, zu einem verbesserten mechanistischen Verständnis dieser Krankheiten führen und nicht zuletzt als “treatment response“ Biomarker in präklinischen und klinischen Entwicklungsprogrammen herangezogen werden. In dieser Arbeit sollten deshalb Plasma- und CSF-Metabolitprofile identifiziert werden, die eine Differenzierung von PD zu gesunden Kontrollen, Assoziierung zu PD mit Demenz (PDD) sowie eine Abgrenzung zu unterschiedlichen PD-Subtypen wie akinetisch-rigiden sowie tremor-dominanten PD-Patienten ermöglichen. Weiterhin wurden in dieser Arbeit Plasmametabolite zur Diagnose von primär-progressiver MS (PPMS) erforscht und auf ihre Spezifität gegenüber schubförmig remittierender MS (RRMS) und PD geprüft sowie deren Verlauf während der PPMS Progression getestet. Hierbei konnten durch “untargeted Metabolomics“ in Kombination mit statistischen Modellen mehrere Plasma- und CSF-Metabolite in PD-Patienten/Erkrankten ermittelt werden, die mit Hilfe von statistischen Diagnosemodellen eine Differenzierung zu gesunden Personen ermöglichen. Darüber hinaus wurden in dieser Arbeit PDD-spezifische Serummetabolite identifiziert, die wiederum genutzt werden können, um diesen PD-Typen von gesunden Individuen und PD-Patienten ohne Demenz abzugrenzen. Des Weiteren konnten bei akinetisch-rigiden PD-Patienten spezifische Metabolite entdeckt werden, die im Vergleich zu tremor-dominanten PD-Patienten eine stärkere metabolische Krankheitssymptomatik suggerieren. Im Zusammenhang mit PPMS wurden in dieser Arbeit spezifische Plasma-Metabolite entdeckt, die zur Diagnose gegen RRMS, PD und gesunden Kontrollen genutzt werden können. Interessanterweise zeigte dabei ein spezifisches Lipid geringere Werte im PPMS Krankheitsverlauf, wodurch sich dieses als möglicher Marker zur Progressionsdiagnostik dieser Krankheit qualifiziert. Abschließend konnten in dieser Arbeit im humanen Stoffwechsel bisher unbekannte Angriffspunkte des Medikaments Dimethylfumarat, das zur Behandlung von RRMS verwendet wird, ermittelt werden. Durch diese Ergebnisse kann der bis jetzt gänzlich unbekannte Wirkungsmechanismus dieses neuen Medikaments besser beschrieben und verstanden, sowie zur Weiterentwicklung neuer Medikamente gegen RRMS genutzt werden. KW - metabolomics KW - biomarker KW - multiple sclerosis KW - Parkinson's disease KW - neurodegeneration KW - neuroinflammation KW - machine-learning KW - Parkinson-Krankheit KW - Biomarker KW - Maschinelles-Lernen KW - Metabolomics KW - Multiple-Sklerose Y1 - 2018 ER - TY - THES A1 - Schulze, Sven T1 - Entwicklung und Charakterisierung optischer Biosensorplattformen basierend auf photonischen Kristallen und Faser-Bragg-Gitter T1 - Development and characterization of optical biosensor platforms based on photonic crystalls and fiber Bragg gratings N2 - In dieser Arbeit steht die Entwicklung einer Sensorplattform für biochemische Anwendungen, welche auf einem optischen Detektionsprinzips beruht, im Vordergrund. Während der Entwicklung wurden zwei komplementäre Konzeptideen behandelt, zum einen ein Sensor, der auf photonischen Kristallen und Wellenleiterstrukturen basiert und zum anderen einen faserbasierten Sensor, der chemisch modifizierte Faser-Bragg-Gitter enthält. Das optische Detektionsprinzip in beiden Sensorideen ist die resultierende Brechungsindexänderung als messbare physikochemische Kenngröße. Das aus der Natur bekannte Phänomen der photonischen Kristalle, das u. a. bei Opalen und bei Schmetterlingen zu finden ist, wurde bereits 1887 von Lord Rayleigh beschrieben. Er beschrieb die optischen Eigenschaften von periodischen mehrschichtigen Filmen, welche als vereinfachtes Modell eines eindimensionalen photonischen Kristalls verstanden werden können. Die Periodizität der Brechungsindexänderung resultiert in einem optischen Filter für Frequenzen in einem bestimmten spektralen Bereich, weshalb dann dort keine Lichtausbreitung mehr möglich ist. Wird dieses System aber durch eine Defektstelle in der Brechungsindexperiodizität gestört, sodass daraus zwei perfekt periodische Systeme entstehen, ist die Lichtausbreitung für eine bestimmte Frequenz dennoch möglich. In der Folge resultiert daraus ein schmalbandiges Signal im Transmissionsspektrum. Die erlaubte Frequenz ist dabei u. a. abhängig vom Brechungsindexunterschied des periodischen Systems, d.h. Veränderung des Brechungsindexes einer Schicht führt zu einer spektralen Verschiebung der erlaubten Frequenz, dadurch kann dieses Sensorkonzept für biochemische Sensorik ausgenutzt werden [1]. Diese Entwicklung des auf photonischen Kristallen basierenden Sensors war eine Kooperation mit dem Industriepartner „Nanoplus GmbH“. In der Doktorarbeit wurden Simulationen und praktischen Arbeiten zur Designentwicklung des Sensors und die Arbeiten an einem ersten Modellaufbau für die biochemischen Anwendungen durchgeführt. Für den faserbasierten Sensor wurden Faser-Bragg-Gitter in den Faserkern hineingeschrieben. Hill et al. entdeckten 1978, dass solche Gitterstrukturen genau wie photonische Kristalle als optische Filter fungieren [2]. Die Gitter bestehen dabei aus Änderungen des Brechungsindexes im Faserkern. Im Laufe der nächsten vierzig Jahren wurden verschiedene Einschreibetechniken und Gitterstrukturen entwickelt, weshalb die Eigenschaften der jeweiligen Gitterstrukturen variieren. Eine solche Gitterstruktur sind u. a. die Faser-Bragg-Gitter, deren Gitterperiode, d. h. die Abstände der Brechungsindexmodifikationen, sich im Nanometer- bis Mikrometerbereich befinden. Aufgrund der kleinen Gitterperiode wird eine rückwärtsführende Welle im Kern für eine bestimmte Frequenz bzw. Wellenlänge, der Bragg-Wellenlänge, erzeugt. Im Endeffekt resultiert daraus ein schmalbandiges Signal sowohl im Transmissionsspektrum, als auch im Reflexionsspektrum. Die Resonanzwellenlänge ist dabei proportional zu der Gitterperiode und dem effektiven Brechungsindex, welcher vom Brechungsindex des Kerns und des kernumgebenen Materials abhängig ist. Letztlich eignet sich diese Technik für physikochemische Sensorik. Im Rahmen dieser Arbeit wurden die Gitter mit Hilfe einer relativen neuen Herstellungsmethode in die Fasern geschrieben [3]. Anschließend stand die Entwicklung eines Biosensors im Vordergrund, wobei zunächst ein Protokoll zum Ätzen der Faser mit Flusssäure entwickelt worden ist, dass das System sensitiv zum umgebenen Brechungsindex macht. Am Ende wurde ein Modellaufbau realisiert, indem ein Modellsystem, hier die Detektion vom C-reaktiven Protein mittels spezifischen einzelsträngigen DNS-Aptameren, erfolgreich getestet und quantifiziert worden ist. 1 Mandal, S.; Erickson, D. Nanoscale Optofluidic Sensor Arrays. Opt. Express 2008, 16 (3), 1623–1631. 2 Hill, K. O.; Fujii, Y.; Johnson, D. C.; Kawasaki, B. S. Photosensitivity in Optical Fiber Waveguides: Application to Reflection Filter Fabrication. Appl. Phys. Lett. 1978, 32 (10), 647–649. 3 Martínez, A.; Dubov, M.; Khrushchev, I.; Bennion, I. Direct Writing of Fibre Bragg Gratings by Femtosecond Laser. Electron. Lett. 2004, 40 (19), 1170. N2 - In this thesis, the development of a sensor platform for biochemical applications based on an optical detection principle is in the foreground. Two complementary concept ideas address during development, one based on photonic crystals next to waveguide structures and on the other with a fiber-based sensor containing chemically modified fiber Bragg gratings. The optical detection principle in both sensor ideas is the resulting refractive index change as a measurable physicochemical parameter. Lord Rayleigh described the well-known phenomenon of photonic crystals, which can be found among others in opals and butterflies, already in 1887. He described the optical properties of periodic multilayer films, which can be understood as a simplified model of a one-dimensional photonic crystal. The periodicity of the refractive index change results in an optical filter for frequencies in a certain spectral range, which is why no light propagation is possible there. However, if this is disturbed by a defect point in the refractive index periodicity, resulting in two perfectly periodic systems, the light propagation for a given frequency is still possible. This results in a narrowband signal in the transmission spectrum. The permitted frequency is dependent, inter alia, on the refractive index difference of the periodic system, that is, changing the refractive index of a layer leads to a spectral shift of the permitted frequency, thereby this sensor concept can be exploit for biochemical sensors [1]. This development of the sensor based on photonic crystals was a cooperation with the industrial partner “Nanoplus GmbH“. In the doctoral thesis, simulations and practical work for the design development of the sensor and the work on a first model set-up for the biochemical applications were carried out. For the fiber-based sensor, fiber Bragg gratings were written into the fiber core. Hill et al. discovered in 1978 that such lattice structures act as optical filters just like photonic crystals [2]. The gratings consist of changes in the refractive index in the fiber core. Over the next forty years, various inscription techniques and lattice structures have been developed, which is why the properties of the respective lattice structures vary. Such a lattice structure include the fiber Bragg gratings whose grating period, that is, the distances of the refractive index modifications, are in the nanometer to micrometer range. Due to the small grating period, a backward wave is generated in the core for a particular frequency, the Bragg wavelength. Ultimately, this results in a narrowband signal in both in the transmission spectrum, as well as in the reflection spectrum. The resonant wavelength is proportional to the grating period and the effective refractive index, which depends on the refractive index of the core and the core-surrounded material. Ultimately, this technique is suitable for physicochemical sensors. In this thesis, the gratings were written into the fibers using a relatively new manufacturing method [3]. Subsequently, the development of a biosensor was in the the foreground, whereby first a protocol for the etching of the fiber with hydrofluoric acid was developed, which makes the system sensitive to the surrounded refractive index. In the end, a model design was realized by successfully testing and quantifying a model system, here the detection of the C-reactive protein by means of specific single-stranded DNA aptamers. 1 Mandal, S.; Erickson, D. Nanoscale Optofluidic Sensor Arrays. Opt. Express 2008, 16 (3), 1623–1631. 2 Hill, K. O.; Fujii, Y.; Johnson, D. C.; Kawasaki, B. S. Photosensitivity in Optical Fiber Waveguides: Application to Reflection Filter Fabrication. Appl. Phys. Lett. 1978, 32 (10), 647–649. 3 Martínez, A.; Dubov, M.; Khrushchev, I.; Bennion, I. Direct Writing of Fibre Bragg Gratings by Femtosecond Laser. Electron. Lett. 2004, 40 (19), 1170. KW - Faser-Bragg-Gitter KW - fiber Bragg graiting KW - photonischer Kristall KW - photonic crystall KW - point-by-point-inscription method KW - Punkt-für-Punkt-Einschreibemethode KW - Faserätzen KW - fiber etching KW - optischer Fasersensor KW - fiber optical sensor KW - Aptamere KW - aptamers KW - C-reaktives Protein KW - c-reactive protein KW - Biomarker KW - biomarker Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-422139 ER - TY - GEN A1 - Stoessel, Daniel A1 - Stellmann, Jan-Patrick A1 - Willing, Anne A1 - Behrens, Birte A1 - Rosenkranz, Sina C. A1 - Hodecker, Sibylle C. A1 - Stürner, Klarissa H. A1 - Reinhardt, Stefanie A1 - Fleischer, Sabine A1 - Deuschle, Christian A1 - Maetzler, Walter A1 - Berg, Daniela A1 - Heesen, Christoph A1 - Walther, Dirk A1 - Schauer, Nicolas A1 - Friese, Manuel A. A1 - Pless, Ole T1 - Metabolomic profiles for primary progressive multiple sclerosis stratification and disease course monitoring T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Primary progressive multiple sclerosis (PPMS) shows a highly variable disease progression with poor prognosis and a characteristic accumulation of disabilities in patients. These hallmarks of PPMS make it difficult to diagnose and currently impossible to efficiently treat. This study aimed to identify plasma metabolite profiles that allow diagnosis of PPMS and its differentiation from the relapsing remitting subtype (RRMS), primary neurodegenerative disease (Parkinson’s disease, PD), and healthy controls (HCs) and that significantly change during the disease course and could serve as surrogate markers of multiple sclerosis (MS)-associated neurodegeneration over time. We applied untargeted high-resolution metabolomics to plasma samples to identify PPMS-specific signatures, validated our findings in independent sex- and age-matched PPMS and HC cohorts and built discriminatory models by partial least square discriminant analysis (PLS-DA). This signature was compared to sex- and age-matched RRMS patients, to patients with PD and HC. Finally, we investigated these metabolites in a longitudinal cohort of PPMS patients over a 24-month period. PLS-DA yielded predictive models for classification along with a set of 20 PPMS-specific informative metabolite markers. These metabolites suggest disease-specific alterations in glycerophospholipid and linoleic acid pathways. Notably, the glycerophospholipid LysoPC(20:0) significantly decreased during the observation period. These findings show potential for diagnosis and disease course monitoring, and might serve as biomarkers to assess treatment efficacy in future clinical trials for neuroprotective MS therapies. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 694 KW - untargeted metabolomics KW - biomarker KW - PPMS KW - MS neurodegeneration KW - LysoPC(20:0) Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-426307 SN - 1866-8372 IS - 694 ER - TY - THES A1 - Genderjahn, Steffi T1 - Biosignatures of Present and Past Microbial Life in Southern African Geoarchives T1 - Biosignaturen von gegenwärtigem und vergangenem mikrobiellen Leben in südafrikanischen Geoarchiven N2 - Global climate change is one of the greatest challenges of the 21st century, with influence on the environment, societies, politics and economies. The (semi-)arid areas of Southern Africa already suffer from water scarcity. There is a great variety of ongoing research related to global climate history but important questions on regional differences still exist. In southern African regions terrestrial climate archives are rare, which makes paleoclimate studies challenging. Based on the assumption that continental pans (sabkhas) represent a suitable geo-archive for the climate history, two different pans were studied in the southern and western Kalahari Desert. A combined approach of molecular biological and biogeochemical analyses is utilized to investigate the diversity and abundance of microorganisms and to trace temporal and spatial changes in paleoprecipitation in arid environments. The present PhD thesis demonstrates the applicability of pan sediments as a late Quaternary geo-archive based on microbial signature lipid biomarkers, such as archaeol, branched and isoprenoid glycerol dialkyl glycerol tetraethers (GDGTs) as well as phospholipid fatty acids (PLFA). The microbial signatures contained in the sediment provide information on the current or past microbial community from the Last Glacial Maximum to the recent epoch, the Holocene. The results are discussed in the context of regional climate evolution in southwestern Africa. The seasonal shift of the Innertropical Convergence Zone (ITCZ) along the equator influences the distribution of precipitation- and climate zones. The different expansion of the winter- and summer rainfall zones in southern Africa was confirmed by the frequency of certain microbial biomarkers. A period of increased precipitation in the south-western Kalahari could be described as a result of the extension of the winter rainfall zone during the last glacial maximum (21 ± 2 ka). Instead a period of increased paleoprecipitation in the western Kalahari was indicated during the Late Glacial to Holocene transition. This was possibly caused by a southwestern shift in the position of the summer rainfall zone associated to the southward movement of the ITCZ. Furthermore, for the first time this study characterizes the bacterial and archaeal life based on 16S rRNA gene high-throughput sequencing in continental pan sediments and provides an insight into the recent microbial community structure. Near-surface processes play an important role for the modern microbial ecosystem in the pans. Water availability as well as salinity might determine the abundance and composition of the microbial communities. The microbial community of pan sediments is dominated by halophilic and dry-adapted archaea and bacteria. Frequently occurring microorganisms such as, Halobacteriaceae, Bacillus and Gemmatimonadetes are described in more detail in this study. N2 - Der globale Klimawandel beeinflusst Umwelt, Gesellschaft, Politik sowie Wirtschaft und ist eine der größten Herausforderungen des 21. Jahrhunderts. Die semi-ariden bzw. ariden Gebiete im südlichen Afrika leiden bereits unter Wasserknappheit. Eine Vielzahl laufender Forschungsprojekte befasst sich mit der globalen Klimageschichte, wobei häufig Fragen zu regionalen Unterschieden offen bleiben. In den südafrikanischen Gebieten sind terrestrische Klimaarchive (wie z.B. Seen) selten, so dass die Durchführung von Paleoklimastudien schwierig ist. Basierend auf der Annahme, dass kontinentale Pfannen (Sabkhas) zur Klimarekonstruktion geeignet sind, wurden in der vorliegenden Doktorarbeit zwei unterschiedliche Pfannen in der süd- und in der westlichen Kalahari untersucht. Mittels eines kombinierten Ansatzes aus molekularbiologischen und biogeochemischen Methoden wurde die Diversität und Abundanz der Mikroorganismen analysiert, um räumliche und zeitliche Veränderungen in Bezug auf den Niederschlag in diesen trockenen Gebieten zu rekonstruieren. Diese Dissertation betrachtet u.a. das Potential der Pfannensedimente als Geoarchiv auf Basis der mikrobiellen Biomarkeranalyse, wie Archaeol, verzweigte und isoprenoiden Glycerol Dialkyl Glycerol Tetraethern (GDGTs) sowie Phospholipidfettsäuren (PLFAs). Die im Sediment enthaltenen mikrobiellen Signaturen geben Auskunft über die gegenwärtige bzw. vergangene mikrobielle Gemeinschaft vom Letzten Glazialen Maximum bis zur jüngsten Epoche, dem Holozän. Die Ergebnisse werden im Kontext der regionalen Klimaentwicklung im südwestlichen Afrika diskutiert. Bedingt durch die saisonale Verschiebung der Innertropischen Konvergenzzone (ITCZ) entlang des Äquators verändert sich die Verteilung von Niederschlags- und Klimazonen. Die unterschiedliche Ausdehnung der Winter- und Sommerregenzonen im südlichen Afrika konnte anhand der Häufigkeit bestimmter mikrobieller Biomarker bestätigt werden. Aufgrund der Ausdehnung der Winterregenzone während des Letzten Glazialen Maximums (LGM, 21 ± 2 ka) konnte eine Periode erhöhten Niederschlags in der südwestlichen Kalahari beschrieben werden. Im Gegensatz dazu konnte eine Niederschlagszunahme zwischen dem letzten Glazial bis zum Holozän (17 – 12 ka) in der westlichen Kalahari aufgezeigt werden, ausgelöst durch eine Verschiebung der ITCZ in Richtung Süden. Darüber hinaus charakterisiert diese Studie erstmals das bakterielle und archaelle Leben auf Basis der 16S rRNA Gen Hochdurchsatz-Sequenzierung in kontinentalen Pfannensedimenten und gibt einen Einblick in die Struktur der mikrobiellen Gemeinschaft. Oberflächennahe Prozesse spielen eine wichtige Rolle für das moderne mikrobielle Ökosystem in den Pfannen. Wasserverfügbarkeit sowie der Salzgehalt bestimmen die Abundanz und Diversität der mikrobiellen Gemeinschaften. Gelegentliche Regenschauer können die Bedingungen an den oberflächennahen Sedimenten schnell verändern und das mikrobielle Leben beeinflussen. Die mikrobielle Gemeinschaft der Pfannensedimente wird von halophilen und an die Trockenheit angepassten Archaeen und Bakterien dominiert. Häufig vorkommende Mikroorganismen, wie zum Beispiel Halobacteriaceae, Bacillus und Gemmatimonadetes werden in der vorliegenden Arbeit näher beschrieben. Diese Arbeit gibt einen Einblick in die Diversität und Verteilung der mikrobiellen Gemeinschaft in nährstoffarmen und niederschlagsarmen, semi-ariden Habitaten. Sie beschreibt die Verwendung von Lipidbiomarkern als Proxy der mikrobiellen Abundanz in Bezug auf vergangene klimatische Veränderungen in der Kalahari. KW - biomarker KW - paleoclimate KW - Kalahari KW - halophiles KW - next generation sequencing KW - Biomarker KW - Paläoklima KW - Kalahari KW - Halophile KW - Hochdurchsatzsequenzierung Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-410110 ER - TY - JOUR A1 - Schulze-Makuch, Dirk A1 - Wagner, Dirk A1 - Kounaves, Samuel P. A1 - Mangelsdorf, Kai A1 - Devine, Kevin G. A1 - de Vera, Jean-Pierre A1 - Schmitt-Kopplin, Philippe A1 - Grossart, Hans-Peter A1 - Parro, Victor A1 - Kaupenjohann, Martin A1 - Galy, Albert A1 - Schneider, Beate A1 - Airo, Alessandro A1 - Froesler, Jan A1 - Davila, Alfonso F. A1 - Arens, Felix L. A1 - Caceres, Luis A1 - Cornejo, Francisco Solis A1 - Carrizo, Daniel A1 - Dartnell, Lewis A1 - DiRuggiero, Jocelyne A1 - Flury, Markus A1 - Ganzert, Lars A1 - Gessner, Mark O. A1 - Grathwohl, Peter A1 - Guan, Lisa A1 - Heinz, Jacob A1 - Hess, Matthias A1 - Keppler, Frank A1 - Maus, Deborah A1 - McKay, Christopher P. A1 - Meckenstock, Rainer U. A1 - Montgomery, Wren A1 - Oberlin, Elizabeth A. A1 - Probst, Alexander J. A1 - Saenz, Johan S. A1 - Sattler, Tobias A1 - Schirmack, Janosch A1 - Sephton, Mark A. A1 - Schloter, Michael A1 - Uhl, Jenny A1 - Valenzuela, Bernardita A1 - Vestergaard, Gisle A1 - Woermer, Lars A1 - Zamorano, Pedro T1 - Transitory microbial habitat in the hyperarid Atacama Desert JF - Proceedings of the National Academy of Sciences of the United States of America KW - habitat KW - aridity KW - microbial activity KW - biomarker KW - Mars Y1 - 2018 U6 - https://doi.org/10.1073/pnas.1714341115 SN - 0027-8424 VL - 115 IS - 11 SP - 2670 EP - 2675 PB - National Acad. of Sciences CY - Washington ER - TY - JOUR A1 - Shahid, Muhammad A1 - Manchi, G. A1 - Slunsky, Pavel A1 - Naseer, O. A1 - Fatima, A. A1 - Leo, B. A1 - Raila, Jens T1 - A systemic review of existing serological possibilities to diagnose canine osteoarthritis with a particular focus on extracellular matrix proteoglycans and protein JF - Polish journal of veterinary sciences : PJVS : the journal of Committee of Veterinary Sciences of Polish Academy of Sciences and University of Warmia and Mazury in Olsztyn N2 - Extra-cellular matrix (ECM) components are important and their stabilization is significant in maintaining normal healthy joint environment. In osteoarthritis (OA), ECM components are altered and indicate disease progression. The joint ECM is composed of proteoglycans (aggrecan, perlecan,inter α-trypsin inhibitor), glycoproteins (fibronectin, lubricin, COMP) and collagen types (most abundantly collagen type II) which represent structural and functional transformation during disease advancement. ECM investigation revealed significant biomarkers of OA that could be used as a diagnostic and therapeutic tool in different canine orthopedic diseases. This review deliberates our current findings of how the components of ECM change at the molecular level during disease progression in canine OA. KW - extra-cellular matrix KW - canine osteoarthritis KW - biomarker KW - synovial fluid KW - proteomix analysis Y1 - 2017 U6 - https://doi.org/10.1515/pjvs-2017-0024 SN - 1505-1773 SN - 2300-2557 VL - 20 IS - 1 SP - 189 EP - 201 PB - De Gruyter CY - Berlin ER - TY - THES A1 - Grewe, Sina T1 - Hydro- and biogeochemical investigations of lake sediments in the Kenyan Rift Valley T1 - Hydro- und biogeochemische Untersuchungen von Seesedimenten aus dem Kenianischen Rift Valley N2 - Die Seen im kenianischen Riftsystem bieten die einmalige Gelegenheit eine große Bandbreite an hydrochemischen Umweltbedingungen zu studieren, die von Süßwasserseen bis hin zu hochsalinen und alkalinen Seen reichen. Da wenig über die hydro- und biogeochemischen Bedingungen in den darunterliegenden Seesedimenten bekannt ist, war es das Ziel dieser Arbeit, bereits existierende Datensätze mit Daten aus der Porenwasser- und Biomarker-Analyse zu erweitern. Zusätzlich wurden reduzierte Schwefelkomponenten und Sulfatreduktionsraten in den Sedimenten bestimmt. Mit den neu gewonnenen Daten wurde der anthropogene und mikrobielle Einfluss auf die Seesedimente untersucht sowie der Einfluss der Wasserchemie auf den Abbau und den Erhalt von organischem Material im Sediment. Zu den untersuchten Seen gehörten: Logipi, Eight (ein kleiner Kratersee in der Region Kangirinyang), Baringo, Bogoria, Naivasha, Oloiden und Sonachi. Die Biomarker-Zusammensetzungen in den untersuchten Seesedimenten waren ähnlich; allerdings gab es einige Unterschiede zwischen den salinen Seen und den Süßwasserseen. Einer dieser Unterschiede war das Vorkommen eines mit β-Carotin verwandten Moleküls, das nur in den salinen Seen gefunden wurde. Dieses Molekül stammt wahrscheinlich von Cyanobakterien, Einzellern die in großer Anzahl in salinen Seen vorkommen. In den beiden Süßwasserseen wurde Stigmasterol gefunden, ein für Süßwasseralgen charakteristisches Sterol. In dieser Studie hat sich gezeigt, dass Bogoria und Sonachi für Umweltrekonstruktionen mit Biomarkern besonders gut geeignet sind, da die Abwesenheit von Sauerstoff an deren Seegründen den Abbau von organischem Material verlangsamt. Andere Seen, wie zum Beispiel Naivasha, sind aufgrund des großen anthropogenen Einflusses weniger gut für solche Rekonstruktionen geeignet. Die Biomarker-Analyse bot jedoch die Möglichkeit, den menschlichen Einfluss auf den See zu studieren. Desweiteren zeigte diese Studie, dass sich Horizonte mit einem hohen Anteil an elementarem Schwefel als temporale Marker nutzen lassen. Diese Horizonte wurden zu einer Zeit abgelagert, als die Wasserpegel sehr niedrig waren. Der Schwefel wurde von Mikroorganismen abgelagert, die zu anoxygener Photosynthese oder Sulfidoxidation fähig sind. N2 - The lakes in the Kenyan Rift Valley offer the unique opportunity to study a wide range of hydrochemical environmental conditions, ranging from freshwater to highly saline and alkaline lakes. Because little is known about the hydro- and biogeochemical conditions in the underlying lake sediments, it was the aim of this study to extend the already existing data sets with data from porewater and biomarker analyses. Additionally, reduced sulphur compounds and sulphate reduction rates in the sediment were determined. The new data was used to examine the anthropogenic and microbial influence on the lakes sediments as well as the influence of the water chemistry on the degradation and preservation of organic matter in the sediment column. The lakes discussed in this study are: Logipi, Eight (a small crater lake in the region of Kangirinyang), Baringo, Bogoria, Naivasha, Oloiden, and Sonachi. The biomarker compositions were similar in all studied lake sediments; nevertheless, there were some differences between the saline and freshwater lakes. One of those differences is the occurrence of a molecule related to β-carotene, which was only found in the saline lakes. This molecule most likely originates from cyanobacteria, single-celled organisms which are commonly found in saline lakes. In the two freshwater lakes, stigmasterol, a sterol characteristic for freshwater algae, was found. In this study, it was shown that Lakes Bogoria and Sonachi can be used for environmental reconstructions with biomarkers, because the absence of oxygen at the lake bottoms slowed the degradation process. Other lakes, like for example Lake Naivasha, cannot be used for such reconstructions, because of the large anthropogenic influence. But the biomarkers proved to be a useful tool to study those anthropogenic influences. Additionally, it was observed that horizons with a high concentration of elemental sulphur can be used as temporal markers. Those horizons were deposited during times when the lake levels were very low. The sulphur was deposited by microorganisms which are capable of anoxygenic photosynthesis or sulphide oxidation. KW - Ostafrikansches Rift KW - saline Seen KW - Biomarker KW - Umweltrekonstruktion KW - Sulfatreduktion KW - Seesediment KW - East African Rift KW - saline lakes KW - biomarker KW - environmental reconstruction KW - sulphate reduction KW - lake sediment Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-98342 ER - TY - GEN A1 - Hische, Manuela A1 - Larhlimi, Abdelhalim A1 - Schwarz, Franziska A1 - Fischer-Rosinský, Antje A1 - Bobbert, Thomas A1 - Assmann, Anke A1 - Catchpole, Gareth S. A1 - Pfeiffer, Andreas F. H. A1 - Willmitzer, Lothar A1 - Selbig, Joachim A1 - Spranger, Joachim T1 - A distinct metabolic signature predictsdevelopment of fasting plasma glucose T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - Background High blood glucose and diabetes are amongst the conditions causing the greatest losses in years of healthy life worldwide. Therefore, numerous studies aim to identify reliable risk markers for development of impaired glucose metabolism and type 2 diabetes. However, the molecular basis of impaired glucose metabolism is so far insufficiently understood. The development of so called 'omics' approaches in the recent years promises to identify molecular markers and to further understand the molecular basis of impaired glucose metabolism and type 2 diabetes. Although univariate statistical approaches are often applied, we demonstrate here that the application of multivariate statistical approaches is highly recommended to fully capture the complexity of data gained using high-throughput methods. Methods We took blood plasma samples from 172 subjects who participated in the prospective Metabolic Syndrome Berlin Potsdam follow-up study (MESY-BEPO Follow-up). We analysed these samples using Gas Chromatography coupled with Mass Spectrometry (GC-MS), and measured 286 metabolites. Furthermore, fasting glucose levels were measured using standard methods at baseline, and after an average of six years. We did correlation analysis and built linear regression models as well as Random Forest regression models to identify metabolites that predict the development of fasting glucose in our cohort. Results We found a metabolic pattern consisting of nine metabolites that predicted fasting glucose development with an accuracy of 0.47 in tenfold cross-validation using Random Forest regression. We also showed that adding established risk markers did not improve the model accuracy. However, external validation is eventually desirable. Although not all metabolites belonging to the final pattern are identified yet, the pattern directs attention to amino acid metabolism, energy metabolism and redox homeostasis. Conclusions We demonstrate that metabolites identified using a high-throughput method (GC-MS) perform well in predicting the development of fasting plasma glucose over several years. Notably, not single, but a complex pattern of metabolites propels the prediction and therefore reflects the complexity of the underlying molecular mechanisms. This result could only be captured by application of multivariate statistical approaches. Therefore, we highly recommend the usage of statistical methods that seize the complexity of the information given by high-throughput methods. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 850 KW - prediction KW - fasting glucose KW - type 2 diabetes KW - metabolomics KW - plasma KW - random forest KW - metabolite KW - regression KW - biomarker Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-427400 SN - 1866-8372 IS - 850 ER - TY - THES A1 - Strehmel, Nadine T1 - GC-TOF-MS basierte Analyse von niedermolekularen Primär- und Sekundärmetaboliten agrarwirtschaftlich bedeutsamer Nutzpflanzen T1 - GC-TOF-MS based metabolite profiling of low molecular weight primary and secondary metabolites of agricultural meaningful crops N2 - Die Qualität von Nutzpflanzen ist von zahlreichen Einflussfaktoren wie beispielsweise Lagerbedingungen und Sorteneigenschaften abhängig. Um Qualitätsmängel zu minimieren und Absatzchancen von Nutzpflanzen zu steigern sind umfangreiche Analysen hinsichtlich ihrer stofflichen Zusammensetzung notwendig. Chromatographische Techniken gekoppelt an ein Massenspektrometer und die Kernspinresonanzspektroskopie wurden dafür bislang verwendet. In der vorliegenden Arbeit wurde ein Gaschromatograph an ein Flugzeitmassenspektrometer (GC-TOF-MS) gekoppelt, um physiologische Prozesse bzw. Eigenschaften (die Schwarzfleckigkeit, die Chipsbräunung, das Physiologische Alter und die Keimhemmung) von Nutzpflanzen aufzuklären. Als Pflanzenmodell wurde dafür die Kartoffelknolle verwendet. Dazu wurden neue analytische Lösungsansätze entwickelt, die eine zielgerichtete Auswertung einer Vielzahl von Proben, die Etablierung einer umfangreichen Referenzspektrenbibliothek und die sichere Archivierung aller experimentellen Daten umfassen. Das Verfahren der Probenvorbereitung wurde soweit modifiziert, dass gering konzentrierte Substanzen mittels GC-TOF-MS analysiert werden können. Dadurch wurde das durch die Probenvorbereitung limitierte Substanzspektrum erweitert. Anhand dieser Lösungsansätze wurden physiologisch relevante Stoffwechselprodukte identifiziert, welche indikativ (klassifizierend) bzw. prädiktiv (vorhersagend) für die physiologischen Prozesse sind. Für die Schwarzfleckigkeitsneigung und die Chipseignung wurde jeweils ein biochemisches Modell zur Vorhersage dieser Prozesse aufgestellt und auf eine Züchtungspopulation übertragen. Ferner wurden für die Schwarzfleckigkeit Stoffwechselprodukte des Respirationsstoffwechsels identifiziert sowie Aminosäuren, Glycerollipide und Phenylpropanoide für das Physiologische Alter als relevant erachtet. Das physiologische Altern konnte durch die Anwendung höherer Temperaturen beschleunigt werden. Durch Anwendung von Keimhemmern (Kümmelöl, Chlorpropham) wurde eine Verzögerung des physiologischen Alterns beobachtet. Die Applikation von Kümmelöl erwies sich dabei als besonders vorteilhaft. Kümmelöl behandelte Knollen wiesen im Vergleich zu unbehandelten Knollen nur Veränderungen im Aminosäure-, Zucker- und Sekundärstoffwechsel auf. Chlorpropham behandelte Knollen wiesen einen ähnlichen Stoffwechsel wie die unbehandelten Knollen auf. Für die bislang noch nicht identifizierten Stoffwechselprodukte wurden im Rahmen dieser Arbeit das Verfahren der „gezielten An-/Abreicherung“, der „gepaarten NMR/GC-TOF-MS Analyse“ und das „Entscheidungsbaumverfahren“ entwickelt. Diese ermöglichen eine Klassifizierung von GC-MS Signalen im Hinblick auf ihre chemische Funktionalität. Das Verfahren der gekoppelten NMR/GC-TOF-MS Analyse erwies sich dabei als besonders erfolgversprechend, da es eine Aufklärung bislang unbekannter gaschromatographischer Signale ermöglicht. In der vorliegenden Arbeit wurden neue Stoffwechselprodukte in der Kartoffelknolle identifiziert, wodurch ein wertvoller Beitrag zur Analytik der Metabolomik geleistet wurde. N2 - Several factors influence the quality of crops. These include particular storage conditions and cultivar properties. Minimization of quality defects requires the employment of comprehensive metabolic analysis to enhance the marketing potential of crops. From this point of view chromatographic techniques coupled either with a mass spectrometer or the combination with nuclear magnetic resonance spectroscopy have been successfully applied to solve the main tasks. In the present work, a gas chromatograph was coupled to a time of flight mass spectrometer (GC-TOF-MS) to analyze physiological processes and attitudes of crops like black spot bruising, chips tanning, physiological aging, and sprouting inhibition. For this purpose the potato tuber was employed as a model plant. Therefore, new analytical approaches were developed comprising the targeted analysis of a multitude of samples, the establishment of a comprehensive mass spectral reference library and the built up of a secure archival storage system. Furthermore, the sample preparation protocol was modified to analyze trace components with the help of GC-TOF-MS as well. This helped to extend the discovery of more endogenous metabolites. These analytical approaches were required to identify physiological relevant indicative and predictive metabolites. Consequently, a biochemical model was build up for the process of black spot bruising and chips tanning respectively. These models could be applied to an unknown breeding progeny. Metabolites of the respiratory chain were identified as relevant for the process of black spot bruising whereas amino acids, lipids and phenylpropanoids were of high importance for the process of physiological aging.  The process of physiological aging could be accelerated while applying higher temperatures and could be delayed while applying sprouting inhibitors, like caraway oil and chlorpropham. Compared to chlorpropham, caraway oil exhibited more advantages with respect to storage attitudes although it caused significant changes in the amino acid, sugar and secondary metabolism during a common storage period. However, the chlorpropham treated tubers showed a similar phenotype in comparison to the control tubers. In addition, several methods were developed with respect to the classification of yet unidentified signals. These cover the decision tree process, the targeted enrichment and depletion of specific metabolites with the help of solid phase extraction and the paired NMR and GC-MS analyses. The paired NMR and GC-MS analysis appears very promising because it allows for the identification of unknown GC-MS signals. Thus, this work makes a valuable contribution to the analytics of the metabolome, as new metabolites could be identified which are of physiological relevance for the potato tuber. KW - Stoffwechselprodukt KW - Kartoffelknolle KW - Identifizierung KW - analytische Lösungsansätze KW - Biomarker KW - metabolite KW - potato tuber KW - identification KW - analytical approaches KW - biomarker Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-51238 ER -