TY - JOUR A1 - Balci, K. A1 - Akkaya, Y. A1 - Akyuz, S. A1 - Collier, W. B. A1 - Stricker, M. C. A1 - Stover, D. D. A1 - Ritzhaupt, G. A1 - Koch, Andreas A1 - Kleinpeter, Erich T1 - The effects of conformation and zwitterionic tautomerism on the structural and vibrational spectral data of anserine JF - Vibrational spectroscopy : an international journal devoted to applications of infrared and raman spectroscopy N2 - In this study, the stable conformers of neutral anserine were searched by molecular dynamics simulations and energy minimization calculations using the MM2 force field. Thermochemical calculations at B3LYP/6-31G(d) level of theory followed these preliminary calculations. The results confirmed that neutral anserine has quite a flexible structure and many stable gauche and trans conformers at room temperature. Nevertheless, two are considerably more favourable in energy than the others and expected to dominate the gas-phase and matrix IR spectra of the molecule. The corresponding structural and vibrational spectral data for these two conformers of neutral anserine, whose relative stabilities were also examined by high-accuracy energy calculations carried out using G3MP2B3 method, and for the most stable conformer of anserine in zwitterion form were calculated at B3LYP/6-311++G(d,p) level of theory. The calculated harmonic force constants were refined using the Scaled Quantum Mechanical Force Field (SQM-FF) method and then used to produce the refined wavenumbers, potential energy distributions (PEDs) and IR and Raman intensities. These refined data together with the scaled harmonic wavenumbers obtained using another method, Dual Scale factors (DS), enabled us to correctly analyse the observed IR and Raman spectra of anserine and revealed the effects of conformation and zwitterionic tautomerism on its structural and vibrational spectral data. (C) 2016 Elsevier B.V. All rights reserved. KW - Anserine KW - Matrix IR spectrum KW - Tautomerism KW - SQM-FF KW - Dual scale factors Y1 - 2016 U6 - https://doi.org/10.1016/j.vibspec.2016.08.003 SN - 0924-2031 SN - 1873-3697 VL - 86 SP - 277 EP - 289 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Wentrup, Curt A1 - Koch, Rainer A1 - Kleinpeter, Erich T1 - Twisted C=C Double Bonds with Very Low Rotational Barriers in Dioxanediones and Isoxazolones Determined by Low-Temperature Dynamic NMR Spectroscopy and Computational Chemistry JF - European journal of organic chemistry KW - NMR spectroscopy KW - Twisted double bonds KW - Push-pull effect KW - Density functional calculations Y1 - 2016 U6 - https://doi.org/10.1002/ejoc.201600931 SN - 1434-193X SN - 1099-0690 SP - 4985 EP - 4990 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Barta, Petra A1 - Szatmari, Istvan A1 - Fueloep, Ferenc A1 - Heydenreich, Matthias A1 - Koch, Andreas A1 - Kleinpeter, Erich T1 - Synthesis and stereochemistry of new naphth[1,3]oxazino[3,2-a] benzazepine and naphth[1,3]oxazino[3,2-e]thienopyridine derivatives JF - Tetrahedron N2 - Through the reactions of 1- or 2-naphthol and 4,5-dihydro-3H-benz[c]azepine or 6,7-dihydrothieno[3,2-c]pyridine, new aminonaphthol derivatives were prepared. The syntheses were extended by using N-containing naphthol analogues such as 5-hydroxyisoquinoline and 6-hydroxyquinoline. The ring closures of the novel bifunctional compounds were also achieved, resulting in new naphth[2,1-e][1,3]oxazines, naphth[1,2-e][1,3]oxazines, isoquinolino[5,6-e][1,3]oxazines and quinolino[5,6-e][1,3]oxazines. H-1 NMR spectra of the target heterocycles 16, 20 and 21 were sufficiently resolved to indentify the present stereochemistry; therefore, beside computed structures, spatial experimental (dipolar coupling-NOE) and computed (ring current effect of the naphthyl moiety-TSNMRS) NMR studies were employed. The studied heterocycles exist exclusively as S(14b),R(N), R(14b),S(N), and S(16b)S(N) isomers, respectively. The flexible moieties of the studied compounds prefer. (C) 2016 Elsevier Ltd. All rights reserved. KW - Modified Mannich reaction KW - Thienopyridine KW - Benzazepine KW - NMR spectroscopy KW - Stereochemistry KW - Theoretical calculations Y1 - 2016 U6 - https://doi.org/10.1016/j.tet.2016.03.058 SN - 0040-4020 VL - 72 SP - 2402 EP - 2410 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Rasovic, Aleksandar A1 - Blagojevic, Vladimir A1 - Baranac-Stojanovic, Marija A1 - Kleinpeter, Erich A1 - Markovic, Rade A1 - Minic, Dragica M. T1 - Quantification of the push-pull effect in 2-alkylidene-4-oxothiazolidines by using NMR spectral data and barriers to rotation around the C=C bond JF - New journal of chemistry N2 - Information about the strength of donor-acceptor interactions in push-pull alkenes is valuable, as this so-called "push-pull effect' influences their chemical reactivity and dynamic behaviour. In this paper, we discuss the applicability of NMR spectral data and barriers to rotation around the CQC double bond to quantify the push-pull effect in biologically important 2-alkylidene-4-oxothiazolidines. While olefinic proton chemical shifts and differences in C-13 NMR chemical shifts of the two carbons constituting the CQC double bond fail to give the correct trend in the electron withdrawing ability of the substituents attached to the exocyclic carbon of the double bond, barriers to rotation prove to be a reliable quantity in providing information about the extent of donor-acceptor interactions in the push-pull systems studied. In particular all relevant kinetic data, that is the Arrhenius parameters ( apparent activation energy Ea and frequency factor A) and activation parameters ( Delta S-double dagger, Delta H-double dagger and Delta G(double dagger)), were determined from the data of the experimentally studied configurational isomerization of ( E)-9a. These results were compared to previously published related data for other two compounds, ( Z)-1b and ( 2E, 5Z)-7, showing that experimentally determined Delta G(double dagger) values are a good indicator of the strength of push-pull character. Theoretical calculations of the rotational barriers of eight selected derivatives excellently correlate with the calculated CQC bond lengths and corroborate the applicability of Delta G(double dagger) for estimation of the strength of the push-pull effect in these and related systems. Y1 - 2016 U6 - https://doi.org/10.1039/c6nj00901h SN - 1144-0546 SN - 1369-9261 VL - 40 SP - 6364 EP - 6373 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Reppert, Alexander von A1 - Sarhan, Radwan Mohamed A1 - Stete, Felix A1 - Pudell, Jan-Etienne A1 - Del Fatti, N. A1 - Crut, A. A1 - Koetz, Joachim A1 - Liebig, Ferenc A1 - Prietzel, Claudia Christina A1 - Bargheer, Matias T1 - Watching the Vibration and Cooling of Ultrathin Gold Nanotriangles by Ultrafast X-ray Diffraction JF - The journal of physical chemistry : C, Nanomaterials and interfaces N2 - We study the vibrations of ultrathin gold nanotriangles upon optical excitation of the electron gas by ultrafast X-ray diffraction. We quantitatively measure the strain evolution in these highly asymmetric nano-objects, providing a direct estimation of the amplitude and phase of the excited vibrational motion. The maximal strain value is well reproduced by calculations addressing pump absorption by the nanotriangles and their resulting thermal expansion. The amplitude and phase of the out-of-plane vibration mode with 3.6 ps period dominating the observed oscillations are related to two distinct excitation mechanisms. Electronic and phonon pressures impose stresses with different time dependences. The nanosecond relaxation of the expansion yields a direct temperature sensing of the nano-object. The presence of a thin organic molecular layer at the nanotriangle/substrate interfaces drastically reduces the thermal conductance to the substrate. Y1 - 2016 U6 - https://doi.org/10.1021/acs.jpcc.6b11651 SN - 1932-7447 VL - 120 SP - 28894 EP - 28899 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Vorburger, Thomas A1 - Nedielkov, Ruslan A1 - Brosig, Alexander A1 - Bok, Eva A1 - Schunke, Emina A1 - Steffen, Wojtek A1 - Mayer, Sonja A1 - Goetz, Friedrich A1 - Möller, Heiko Michael A1 - Steuber, Julia T1 - Role of the Na+-translocating NADH:quinone oxidoreductase in voltage generation and Na+ extrusion in Vibrio cholerae JF - Biochimica et biophysica acta : Bioenergetics N2 - For Vibrio cholerae, the coordinated import and export of Na+ is crucial for adaptation to habitats with different osmolarities. We investigated the Na+-extruding branch of the sodium cycle in this human pathogen by in vivo Na-23-NMR spectroscopy. The Na+ extrusion activity of cells was monitored after adding glucose which stimulated respiration via the Na+-translocating NADH:quinone oxidoreductase (Na+-NQR). In a V. cholerae deletion mutant devoid of the Na+-NQR encoding genes (nqrA-F), rates of respiratory Na+ extrusion were decreased by a factor of four, but the cytoplasmic Na+ concentration was essentially unchanged. Furthermore, the mutant was impaired in formation of transmembrane voltage (Delta psi, inside negative) and did not grow under hypoosmotic conditions at pH 8.2 or above. This growth defect could be complemented by transformation with the plasmid encoded nqr operon. In an alkaline environment, Na+/H+ antiporters acidify the cytoplasm at the expense of the transmembrane voltage. It is proposed that, at alkaline pH and limiting Na+ concentrations, the Na+-NQR is crucial for generation of a transmembrane voltage to drive the import of H+ by electrogenic Na+/H+ antiporters. Our study provides the basis to understand the role of the Na+-NQR in pathogenicity of V. cholerae and other pathogens relying on this primary Na+ pump for respiration. (C) 2015 Elsevier B.V. All rights reserved. KW - Nuclear magnetic resonance (NMR) KW - Sodium transport KW - Vibrio cholerae KW - Respiration KW - Na+ homeostasis KW - Hypoosmotic stress Y1 - 2016 U6 - https://doi.org/10.1016/j.bbabio.2015.12.010 SN - 0005-2728 SN - 0006-3002 VL - 1857 SP - 473 EP - 482 PB - Elsevier CY - Amsterdam ER -