TY - JOUR A1 - Gorochowski, Thomas E. A1 - Aycilar-Kucukgoze, Irem A1 - Bovenberg, Roel A. L. A1 - Roubos, Johannes A. A1 - Ignatova, Zoya T1 - A Minimal Model of Ribosome Allocation Dynamics Captures Trade-offs in Expression between Endogenous and Synthetic Genes JF - ACS synthetic biology N2 - Cells contain a finite set of resources that must be distributed across many processes to ensure survival. Among them, the largest proportion of cellular resources is dedicated to protein translation. Synthetic biology often exploits these resources in executing orthogonal genetic circuits, yet the burden this places on the cell is rarely considered. Here, we develop a minimal model of ribosome allocation dynamics capturing the demands on translation when expressing a synthetic construct together with endogenous genes required for the maintenance of cell physiology. Critically, it contains three key variables related to design parameters of the synthetic construct covering transcript abundance, translation initiation rate, and elongation time. We show that model-predicted changes in ribosome allocation closely match experimental shifts in synthetic protein expression rate and cellular growth. Intriguingly, the model is also able to accurately infer transcript levels and translation times after further exposure to additional ambient stress. Our results demonstrate that a simple model of resource allocation faithfully captures the redistribution of protein synthesis resources when faced with the burden of synthetic gene expression and environmental stress. The tractable nature of the model makes it a versatile tool for exploring the guiding principles of efficient heterologous expression and the indirect interactions that can arise between synthetic circuits and their host chassis because of competition for shared translational resources. KW - protein biosynthesis KW - translation KW - synthetic biology KW - systems biology Y1 - 2016 U6 - https://doi.org/10.1021/acssynbio.6b00040 SN - 2161-5063 VL - 5 SP - 710 EP - 720 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - de Araujo, Jose Carlos A1 - Bronstert, Axel T1 - A method to assess hydrological drought in semi-arid environments and its application to the Jaguaribe River basin, Brazil JF - Water International N2 - This manuscript proposes a method to assess hydrological drought in semi-arid environments under high impoundment rate and applies it to the semi-arid Jaguaribe River basin in Brazil. It analyzes droughts (1) in the largest reservoir systems; (2) in the Upper Basin, considering 4744 reservoirs, 800 wells and almost 18,000 cisterns; and (3) in reservoirs of different sizes during multiyear droughts. Results show that the water demand is constrained in the basin; hydrological and meteorological droughts are often out of phase; there is a negative correlation between storage level and drought severity; and the small systems cannot cope with long-term droughts. KW - Reservoirs KW - Brazil KW - multiyear drought KW - water management KW - impoundment rate KW - water demand Y1 - 2016 U6 - https://doi.org/10.1080/02508060.2015.1113077 SN - 0250-8060 SN - 1941-1707 VL - 41 SP - 213 EP - 230 PB - Wiley-Blackwell CY - Abingdon ER - TY - GEN A1 - Puschmann, Anne-Katrin A1 - Wippert, Pia-Maria T1 - A LONGITUDINAL INTERDISCIPLINARY APPROACH TO STRESS AND ITS IMPACT ON THE DEVELOPMENT OF CHRONIC PAIN T2 - Psychosomatic medicine Y1 - 2016 SN - 0033-3174 SN - 1534-7796 VL - 78 SP - A91 EP - A91 PB - Routledge, Taylor & Francis Group CY - Philadelphia ER - TY - JOUR A1 - Kabelitz, Tina A1 - Brzezinka, Krzysztof A1 - Friedrich, Thomas A1 - Gorka, Michal A1 - Graf, Alexander A1 - Kappel, Christian A1 - Bäurle, Isabel T1 - A JUMONJI Protein with E3 Ligase and Histone H3 Binding Activities Affects Transposon Silencing in Arabidopsis JF - Plant physiology : an international journal devoted to physiology, biochemistry, cellular and molecular biology, biophysics and environmental biology of plants N2 - Transposable elements (TEs) make up a large proportion of eukaryotic genomes. As their mobilization creates genetic variation that threatens genome integrity, TEs are epigenetically silenced through several pathways, and this may spread to neighboring sequences. JUMONJI (JMJ) proteins can function as antisilencing factors and prevent silencing of genes next to TEs. Whether TE silencing is counterbalanced by the activity of antisilencing factors is still unclear. Here, we characterize JMJ24 as a regulator of TE silencing. We show that loss of JMJ24 results in increased silencing of the DNA transposon AtMu1c, while overexpression of JMJ24 reduces silencing. JMJ24 has a JumonjiC (JmjC) domain and two RING domains. JMJ24 autoubiquitinates in vitro, demonstrating E3 ligase activity of the RING domain(s). JMJ24-JmjC binds the N-terminal tail of histone H3, and full-length JMJ24 binds histone H3 in vivo. JMJ24 activity is anticorrelated with histone H3 Lys 9 dimethylation (H3K9me2) levels at AtMu1c. Double mutant analyses with epigenetic silencing mutants suggest that JMJ24 antagonizes histone H3K9me2 and requires H3K9 methyltransferases for its activity on AtMu1c. Genome-wide transcriptome analysis indicates that JMJ24 affects silencing at additional TEs. Our results suggest that the JmjC domain of JMJ24 has lost demethylase activity but has been retained as a binding domain for histone H3. This is in line with phylogenetic analyses indicating that JMJ24 (with the mutated JmjC domain) is widely conserved in angiosperms. Taken together, this study assigns a role in TE silencing to a conserved JmjC-domain protein with E3 ligase activity, but no demethylase activity. Y1 - 2016 U6 - https://doi.org/10.1104/pp.15.01688 SN - 0032-0889 SN - 1532-2548 VL - 171 SP - 344 EP - 358 PB - American Society of Plant Physiologists CY - Rockville ER - TY - JOUR A1 - Lämke, Jörn A1 - Brzezinka, Krzysztof A1 - Altmann, Simone A1 - Bäurle, Isabel T1 - A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory JF - The EMBO journal N2 - In nature, plants often encounter chronic or recurring stressful conditions. Recent results indicate that plants can remember a past exposure to stress to be better prepared for a future stress incident. However, the molecular basis of this is poorly understood. Here, we report the involvement of chromatin modifications in the maintenance of acquired thermotolerance (heat stress [HS] memory). HS memory is associated with the accumulation of histone H3 lysine 4 di- and trimethylation at memory-related loci. This accumulation outlasts their transcriptional activity and marks them as recently transcriptionally active. High accumulation of H3K4 methylation is associated with hyper-induction of gene expression upon a recurring HS. This transcriptional memory and the sustained accumulation of H3K4 methylation depend on HSFA2, a transcription factor that is required for HS memory, but not initial heat responses. Interestingly, HSFA2 associates with memory-related loci transiently during the early stages following HS. In summary, we show that transcriptional memory after HS is associated with sustained H3K4 hyper-methylation and depends on a hit-and-run transcription factor, thus providing a molecular framework for HS memory. KW - chromatin KW - H3K4 methylation KW - heat shock transcription factor KW - priming KW - transcriptional memory Y1 - 2016 U6 - https://doi.org/10.15252/embj.201592593 SN - 0261-4189 SN - 1460-2075 VL - 35 SP - 162 EP - 175 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Schwarze, Thomas A1 - Schneider, Radu A1 - Riemer, Janine A1 - Holdt, Hans-Jürgen T1 - A Highly K+-Selective Fluorescent Probe - Tuning the K+-Complex Stability and the K+/Na+ Selectivity by Varying the Lariat-Alkoxy Unit of a Phenylaza[18]crown-6 Ionophore JF - Chemistry : an Asian journal ; an ACES journal N2 - A desirable goal is to synthesize easily accessible and highly K+/Na+-selective fluoroionophores to monitor physiological K+ levels in vitro and in vivo. Therefore, highly K+/Na+-selective ionophores have to be developed. Herein, we obtained in a sequence of only four synthetic steps a set of K+-responsive fluorescent probes 4, 5 and 6. In a systematic study, we investigated the influence of the alkoxy substitution in ortho position of the aniline moiety in -conjugated aniline-1,2,3-triazole-coumarin-fluoroionophores 4, 5 and 6 [R=MeO (4), EtO (5) and iPrO (6)] towards the K+-complex stability and K+/Na+ selectivity. The highest K+-complex stability showed fluoroionophore 4 with a dissociation constant K-d of 19mm, but the K-d value increases to 31mm in combined K+/Na+ solutions, indicating a poor K+/Na+ selectivity. By contrast, 6 showed even in the presence of competitive Na+ ions equal K-d values (K-d(K+)=45mm and K-d(K+/Na+)=45mm) and equal K+-induced fluorescence enhancement factors (FEFs=2.3). Thus, the fluorescent probe 6 showed an outstanding K+/Na+ selectivity and is a suitable fluorescent tool to measure physiological K+ levels in the range of 10-80mm in vitro. Further, the isopropoxy-substituted N-phenylaza[18]crown-6 ionophore in 6 is a highly K+-selective building block with a feasible synthetic route. KW - crown compounds KW - fluorescence KW - fluorescent probes KW - potassium KW - sodium Y1 - 2016 U6 - https://doi.org/10.1002/asia.201500956 SN - 1861-4728 SN - 1861-471X VL - 11 SP - 241 EP - 247 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Anders, Jakob A1 - Mefenza, Michael A1 - Bobda, Christophe A1 - Yonga, Franck A1 - Aklah, Zeyad A1 - Gunn, Kevin T1 - A hardware/software prototyping system for driving assistance investigations JF - Journal of real-time image processing N2 - A holistic design and verification environment to investigate driving assistance systems is presented, with an emphasis on system-on-chip architectures for video applications. Starting with an executable specification of a driving assistance application, subsequent transformations are performed across different levels of abstraction until the final implementation is achieved. The hardware/software partitioning is facilitated through the integration of OpenCV and SystemC in the same design environment, as well as OpenCV and Linux in the run-time system. We built a rapid prototyping, FPGA-based camera system, which allows designs to be explored and evaluated in realistic conditions. Using lane departure and the corresponding performance speedup, we show that our platform reduces the design time, while improving the verification efforts. KW - System on chip KW - Prototyping KW - Hardware/software system KW - Image processing KW - Design flow KW - Driver assistance KW - FPGA KW - Hardware acceleration Y1 - 2016 U6 - https://doi.org/10.1007/s11554-013-0351-4 SN - 1861-8200 SN - 1861-8219 VL - 11 SP - 559 EP - 569 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Liaimer, Anton A1 - Jensen, John B. A1 - Dittmann, Elke T1 - A Genetic and Chemical Perspective on Symbiotic Recruitment of Cyanobacteria of the Genus Nostoc into the Host Plant Blasia pusilla L. JF - Frontiers in microbiology N2 - Liverwort Blasia pusilla L. recruits soil nitrogen-fixing cyanobacteria of genus Nostoc as symbiotic partners. In this work we compared Nostoc community composition inside the plants and in the soil around them from two distant locations in Northern Norway. STRR fingerprinting and 16S rDNA phylogeny reconstruction showed a remarkable local diversity among isolates assigned to several Nostoc clades. An extensive web of negative allelopathic interactions was recorded at an agricultural site, but not at the undisturbed natural site. The cell extracts of the cyanobacteria did not show antimicrobial activities, but four isolates were shown to be cytotoxic to human cells. The secondary metabolite profiles of the isolates were mapped by MALDI-TOF MS, and the most prominent ions were further analyzed by Q-TOF for MS/MS aided identification. Symbiotic isolates produced a great variety of small peptide-like substances, most of which lack any record in the databases. Among identified compounds we found microcystin and nodularin variants toxic to eukaryotic cells. Microcystin producing chemotypes were dominating as symbiotic recruits but not in the free-living community. In addition, we were able to identify several novel aeruginosins and banyaside-like compounds, as well as nostocyclopeptides and nosperin. KW - Cyanobacteria KW - secondary metabolites KW - symbiosis KW - Blasia KW - Nostoc KW - allelopathy Y1 - 2016 U6 - https://doi.org/10.3389/fmicb.2016.01693 SN - 1664-302X VL - 7 SP - 449 EP - 474 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Collenburg, Lena A1 - Walter, Tim A1 - Burgert, Anne A1 - Mueller, Nora A1 - Seibel, Juergen A1 - Japtok, Lukasz A1 - Kleuser, Burkhard A1 - Sauer, Markus A1 - Schneider-Schaulies, Sibylle T1 - A Functionalized Sphingolipid Analogue for Studying Redistribution during Activation in Living T Cells JF - The journal of immunology N2 - Sphingolipids are major components of the plasma membrane. In particular, ceramide serves as an essential building hub for complex sphingolipids, but also as an organizer of membrane domains segregating receptors and signalosomes. Sphingomyelin breakdown as a result of sphingomyelinase activation after ligation of a variety of receptors is the predominant source of ceramides released at the plasma membrane. This especially applies to T lymphocytes where formation of ceramide-enriched membrane microdomains modulates TCR signaling. Because ceramide release and redistribution occur very rapidly in response to receptor ligation, novel tools to further study these processes in living T cells are urgently needed. To meet this demand, we synthesized nontoxic, azido-functionalized ceramides allowing for bio-orthogonal click-reactions to fluorescently label incorporated ceramides, and thus investigate formation of ceramide-enriched domains. Azido-functionalized C-6-ceramides were incorporated into and localized within plasma membrane microdomains and proximal vesicles in T cells. They segregated into clusters after TCR, and especially CD28 ligation, indicating efficient sorting into plasma membrane domains associated with T cell activation; this was abolished upon sphingomyelinase inhibition. Importantly, T cell activation was not abrogated upon incorporation of the compound, which was efficiently excluded from the immune synapse center as has previously been seen in Ab-based studies using fixed cells. Therefore, the functionalized ceramides are novel, highly potent tools to study the subcellular redistribution of ceramides in the course of T cell activation. Moreover, they will certainly also be generally applicable to studies addressing rapid stimulation-mediated ceramide release in living cells. Y1 - 2016 U6 - https://doi.org/10.4049/jimmunol.1502447 SN - 0022-1767 SN - 1550-6606 VL - 196 SP - 3951 EP - 3962 PB - American Assoc. of Immunologists CY - Bethesda ER - TY - JOUR A1 - Mao, Hailiang A1 - Nakamura, Moritaka A1 - Viotti, Corrado A1 - Grebe, Markus T1 - A Framework for Lateral Membrane Trafficking and Polar Tethering of the PEN3 ATP-Binding Cassette Transporter JF - Plant physiology : an international journal devoted to physiology, biochemistry, cellular and molecular biology, biophysics and environmental biology of plants N2 - The outermost cell layer of plants, the epidermis, and its outer (lateral) membrane domain facing the environment are continuously challenged by biotic and abiotic stresses. Therefore, the epidermis and the outer membrane domain provide important selective and protective barriers. However, only a small number of specifically outer membrane-localized proteins are known. Similarly, molecular mechanisms underlying the trafficking and the polar placement of outer membrane domain proteins require further exploration. Here, we demonstrate that ACTIN7 (ACT7) mediates trafficking of the PENETRATION3 (PEN3) outer membrane protein from the trans-Golgi network (TGN) to the plasma membrane in the root epidermis of Arabidopsis (Arabidopsis thaliana) and that actin function contributes to PEN3 endocytic recycling. In contrast to such generic ACT7-dependent trafficking from the TGN, the EXOCYST84b (EXO84b) tethering factor mediates PEN3 outer-membrane polarity. Moreover, precise EXO84b placement at the outer membrane domain itself requires ACT7 function. Hence, our results uncover spatially and mechanistically distinct requirements for ACT7 function during outer lateral membrane cargo trafficking and polarity establishment. They further identify an exocyst tethering complex mediator of outer lateral membrane cargo polarity. Y1 - 2016 U6 - https://doi.org/10.1104/pp.16.01252 SN - 0032-0889 SN - 1532-2548 VL - 172 SP - 2245 EP - 2260 PB - American Society of Plant Physiologists CY - Rockville ER - TY - JOUR A1 - Schlägel, Ulrike E. A1 - Lewis, Mark A. T1 - A framework for analyzing the robustness of movement models to variable step discretization JF - Journal of mathematical biology N2 - When sampling animal movement paths, the frequency at which location measurements are attempted is a critical feature for data analysis. Important quantities derived from raw data, e.g. travel distance or sinuosity, can differ largely based on the temporal resolution of the data. Likewise, when movement models are fitted to data, parameter estimates have been demonstrated to vary with sampling rate. Thus, biological statements derived from such analyses can only be made with respect to the resolution of the underlying data, limiting extrapolation of results and comparison between studies. To address this problem, we investigate whether there are models that are robust against changes in temporal resolution. First, we propose a mathematically rigorous framework, in which we formally define robustness as a model property. We then use the framework for a thorough assessment of a range of basic random walk models, in which we also show how robustness relates to other probabilistic concepts. While we found robustness to be a strong condition met by few models only, we suggest a new method to extend models so as to make them robust. Our framework provides a new systematic, mathematically founded approach to the question if, and how, sampling rate of movement paths affects statistical inference. KW - Animal movement KW - Random walk KW - Sampling rate KW - Discretization KW - GPS data KW - Parameter estimation Y1 - 2016 U6 - https://doi.org/10.1007/s00285-016-0969-5 SN - 0303-6812 SN - 1432-1416 VL - 73 SP - 815 EP - 845 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Ehlert, Christopher A1 - Holzweber, Markus A1 - Lippitz, Andreas A1 - Unger, Wolfgang E. S. A1 - Saalfrank, Peter T1 - A detailed assignment of NEXAFS resonances of imidazolium based ionic liquids JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - In Near Edge X-Ray Absorption Fine Structure (NEXAFS) spectroscopy X-Ray photons are used to excite tightly bound core electrons to low-lying unoccupied orbitals of the system. This technique offers insight into the electronic structure of the system as well as useful structural information. In this work, we apply NEXAFS to two kinds of imidazolium based ionic liquids ([C(n)C(1)im](+)[NTf2](-) and [C(4)C(1)im](+)[I](-)). A combination of measurements and quantum chemical calculations of C K and N K NEXAFS resonances is presented. The simulations, based on the transition potential density functional theory method (TP-DFT), reproduce all characteristic features observed by the experiment. Furthermore, a detailed assignment of resonance features to excitation centers (carbon or nitrogen atoms) leads to a consistent interpretation of the spectra. Y1 - 2016 U6 - https://doi.org/10.1039/c5cp07434g SN - 1463-9076 SN - 1463-9084 VL - 18 SP - 8654 EP - 8661 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Jambrina-Enriquez, Margarita A1 - Sachse, Dirk A1 - Valero-Garces, Blas L. T1 - A deglaciation and Holocene biomarker-based reconstruction of climate and environmental variability in NW Iberian Peninsula: the Sanabria Lake sequence JF - Journal of paleolimnolog N2 - The molecular biomarker composition of two sediment cores from Sanabria Lake (NW Iberian Peninsula) and a survey of modern plants in the watershed provide a reconstruction of past vegetation and landscape dynamics since deglaciation. During a proglacial stage in Lake Sanabria (prior to 14.7 cal ka BP), very low biomarker concentration and carbon preference index (CPI) values similar to 1 suggest that the n-alkanes could have derived from eroded ancient sediment sources or older organic matter with high degree of maturity. During the Late glacial (14.7-11.7 cal ka BP) and the Holocene (last 11.7 cal ka BP) intervals with higher biomarker and triterpenoid concentrations (high %nC(29) , nC(31) alkanes), higher CPI and average carbon length (ACL), and lower P-aq (proportion of aquatic plants) are indicative of major contribution of vascular land plants from a more forested watershed (e.g. Mid Holocene period 7.0-4.0 cal ka BP). Lower biomarker concentrations (high %nC(27) alkanes), CPI and ACL values responded to short phases with decreased allochthonous contribution into the lake that correspond to centennial-scale periods of regional forest decline (e.g. 4-3 ka BP, Roman deforestation after 2.0 ka, and some phases of the LIA, seventeenth-nineteenth centuries). Human activities in the watershed were significant during early medieval times (1.3-1.0 cal ka BP) and since 1960 CE, in both cases associated with relatively higher productivity stages in the lake (lower biomarker and triterpenoid concentrations, high %nC(23) and %nC(31) respectively, lower ACL and CPI values and higher P-aq). The lipid composition of Sanabria Lake sediments indicates a major allochthonous (watershed-derived) contribution to the organic matter budget since deglaciation, and a dominant oligotrophic status during the lake history. The study constrains the climate and anthropogenic forcings and watershed versus lake sources in organic matter accumulation processes and helps to design conservation and management policies in mountain, oligotrophic lakes. KW - Plant n-alkanes KW - Lipid biomarker KW - Sanabria Lake KW - n-Alkanes KW - Holocene KW - Lateglacial KW - Iberian Peninsula Y1 - 2016 U6 - https://doi.org/10.1007/s10933-016-9890-6 SN - 0921-2728 SN - 1573-0417 VL - 56 SP - 49 EP - 66 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Wang, Cheng A1 - Yang, Haojin A1 - Meinel, Christoph T1 - A deep semantic framework for multimodal representation learning JF - Multimedia tools and applications : an international journal N2 - Multimodal representation learning has gained increasing importance in various real-world multimedia applications. Most previous approaches focused on exploring inter-modal correlation by learning a common or intermediate space in a conventional way, e.g. Canonical Correlation Analysis (CCA). These works neglected the exploration of fusing multiple modalities at higher semantic level. In this paper, inspired by the success of deep networks in multimedia computing, we propose a novel unified deep neural framework for multimodal representation learning. To capture the high-level semantic correlations across modalities, we adopted deep learning feature as image representation and topic feature as text representation respectively. In joint model learning, a 5-layer neural network is designed and enforced with a supervised pre-training in the first 3 layers for intra-modal regularization. The extensive experiments on benchmark Wikipedia and MIR Flickr 25K datasets show that our approach achieves state-of-the-art results compare to both shallow and deep models in multimodal and cross-modal retrieval. KW - Multimodal representation KW - Deep neural networks KW - Semantic feature KW - Cross-modal retrieval Y1 - 2016 U6 - https://doi.org/10.1007/s11042-016-3380-8 SN - 1380-7501 SN - 1573-7721 VL - 75 SP - 9255 EP - 9276 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Leung, Ray C. H. T1 - A corpus-based analysis of textbooks used in the orientation course for immigrants in Germany: Ideological and pedagogic implications JF - Journal of Language and Cultural Education KW - orientation course KW - immigrants KW - Germany KW - corpus linguistics KW - textbooks KW - ideologies Y1 - 2016 U6 - https://doi.org/10.1515/jolace-2016-0030 SN - 1339-4045 SN - 1339-4584 VL - 4 SP - 154 EP - 177 PB - De Gruyter CY - Berlin ER - TY - JOUR A1 - Patil, Umesh A1 - Hanne, Sandra A1 - Burchert, Frank A1 - De Bleser, Ria A1 - Vasishth, Shravan T1 - A Computational Evaluation of Sentence Processing Deficits in Aphasia JF - Cognitive science : a multidisciplinary journal of anthropology, artificial intelligence, education, linguistics, neuroscience, philosophy, psychology ; journal of the Cognitive Science Society N2 - Individuals with agrammatic Broca's aphasia experience difficulty when processing reversible non-canonical sentences. Different accounts have been proposed to explain this phenomenon. The Trace Deletion account (Grodzinsky, 1995, 2000, 2006) attributes this deficit to an impairment in syntactic representations, whereas others (e.g., Caplan, Waters, Dede, Michaud, & Reddy, 2007; Haarmann, Just, & Carpenter, 1997) propose that the underlying structural representations are unimpaired, but sentence comprehension is affected by processing deficits, such as slow lexical activation, reduction in memory resources, slowed processing and/or intermittent deficiency, among others. We test the claims of two processing accounts, slowed processing and intermittent deficiency, and two versions of the Trace Deletion Hypothesis (TDH), in a computational framework for sentence processing (Lewis & Vasishth, 2005) implemented in ACT-R (Anderson, Byrne, Douglass, Lebiere, & Qin, 2004). The assumption of slowed processing is operationalized as slow procedural memory, so that each processing action is performed slower than normal, and intermittent deficiency as extra noise in the procedural memory, so that the parsing steps are more noisy than normal. We operationalize the TDH as an absence of trace information in the parse tree. To test the predictions of the models implementing these theories, we use the data from a German sentence—picture matching study reported in Hanne, Sekerina, Vasishth, Burchert, and De Bleser (2011). The data consist of offline (sentence-picture matching accuracies and response times) and online (eye fixation proportions) measures. From among the models considered, the model assuming that both slowed processing and intermittent deficiency are present emerges as the best model of sentence processing difficulty in aphasia. The modeling of individual differences suggests that, if we assume that patients have both slowed processing and intermittent deficiency, they have them in differing degrees. KW - Aphasia KW - Non-canonical sentences KW - Sentence-picture matching KW - Eye movements KW - Computational modeling KW - Cognitive architecture KW - Individual differences Y1 - 2016 U6 - https://doi.org/10.1111/cogs.12250 SN - 0364-0213 SN - 1551-6709 VL - 40 SP - 5 EP - 50 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Yadavalli, Nataraja Sekhar A1 - Loebner, Sarah A1 - Papke, Thomas A1 - Sava, Elena A1 - Hurduc, Nicolae A1 - Santer, Svetlana T1 - A comparative study of photoinduced deformation in azobenzene containing polymer films JF - Soft matter N2 - In this paper two groups supporting different views on the mechanism of light induced polymer deformation argue about the respective underlying theoretical conceptions, in order to bring this interesting debate to the attention of the scientific community. The group of Prof. Nicolae Hurduc supports the model claiming that the cyclic isomerization of azobenzenes may cause an athermal transition of the glassy azobenzene containing polymer into a fluid state, the so-called photo-fluidization concept. This concept is quite convenient for an intuitive understanding of the deformation process as an anisotropic flow of the polymer material. The group of Prof. Svetlana Santer supports the re-orientational model where the mass-transport of the polymer material accomplished during polymer deformation is stated to be generated by the light-induced re-orientation of the azobenzene side chains and as a consequence of the polymer backbone that in turn results in local mechanical stress, which is enough to irreversibly deform an azobenzene containing material even in the glassy state. For the debate we chose three polymers differing in the glass transition temperature, 32 degrees C, 87 degrees C and 95 degrees C, representing extreme cases of flexible and rigid materials. Polymer film deformation occurring during irradiation with different interference patterns is recorded using a homemade set-up combining an optical part for the generation of interference patterns and an atomic force microscope for acquiring the kinetics of film deformation. We also demonstrated the unique behaviour of azobenzene containing polymeric films to switch the topography in situ and reversibly by changing the irradiation conditions. We discuss the results of reversible deformation of three polymers induced by irradiation with intensity (IIP) and polarization (PIP) interference patterns, and the light of homogeneous intensity in terms of two approaches: the re-orientational and the photo-fluidization concepts. Both agree in that the formation of opto-mechanically induced stresses is a necessary prerequisite for the process of deformation. Using this argument, the deformation process can be characterized either as a flow or mass transport. Y1 - 2016 U6 - https://doi.org/10.1039/c6sm00029k SN - 1744-683X SN - 1744-6848 VL - 12 SP - 2593 EP - 2603 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - van zanten, Boris T. A1 - Zasada, Ingo A1 - Koetse, Mark J. A1 - Ungaro, Fabrizio A1 - Hafner, Kati A1 - Verburg, Peter H. T1 - A comparative approach to assess the contribution of landscape features to aesthetic and recreational values in agricultural landscapes JF - Ecosystem Services : Science, Policy and Practice N2 - The importance of cultural ecosystem services in agricultural landscapes is increasingly recognized as agricultural scale enlargement and abandonment affect aesthetic and recreational values of agricultural landscapes. Landscape preference studies addressing these type of values often yield context-specific outcomes, limiting the applicability of their outcomes in landscape policy. Our approach measures the relative importance of landscape features across agricultural landscapes. This approach was applied in the agricultural landscapes of Winterswijk, The Netherlands (n=191) and the Markische Schweiz, Germany (n=113) among visitors in the agricultural landscape. We set up a parallel designed choice experiment, using regionally specific, photorealistic visualizations of four comparable landscape attributes. In the Dutch landscape visitors highly value hedgerows and tree lines, whereas groups of trees and crop diversity are highly valued in the German landscape. Furthermore, we find that differences in relative preference for landscape attributes are, to some extent, explained by socio-cultural background variables such as education level and affinity with agriculture of the visitors. This approach contributes to a better understanding of the cross-regional variation of aesthetic and recreational values and how these values relate to characteristics of the agricultural landscape, which could support the integration of cultural services in landscape policy. (C) 2015 Elsevier B.V. All rights reserved. KW - Cultural ecosystem services KW - Landscape preferences KW - Comparative study KW - Landscape aesthetics KW - Landscape values KW - Agricultural landscape Y1 - 2016 U6 - https://doi.org/10.1016/j.ecoser.2015.11.011 SN - 2212-0416 VL - 17 SP - 87 EP - 98 PB - Elsevier CY - Amsterdam ER - TY - CHAP A1 - Usik, Lillia T1 - A Comparative Analysis of the Frozen Conflicts in the Post-Soviet Space T2 - The European Union and Russia Y1 - 2016 SP - 193 EP - 239 PB - WeltTrends CY - Potsdam ER - TY - JOUR A1 - Hennemann, Anja T1 - A cognitive-constructionist approach to Spanish creo empty set and creo JF - Folia linguistica KW - Cognitive Construction Grammar KW - parenthetic verbs KW - Spanish KW - corpus analysis KW - quantitativity/qualitativity Y1 - 2016 U6 - https://doi.org/10.1515/flin-2016-0017 SN - 0165-4004 SN - 1614-7308 VL - 50 SP - 449 EP - 474 PB - De Gruyter CY - Berlin ER -