TY - JOUR A1 - Zbilut, J. P. A1 - Mitchell, J. C. A1 - Giuliani, A. A1 - Colosimo, A. A1 - Marwan, Norbert A1 - Webber, C. L. T1 - Singular hydrophobicity patterns and net charge : a mesoscopic principle for protein aggregation/folding N2 - A statistical model describing the propensity for protein aggregation is presented. Only amino-acid hydrophobicity values and calculated net charge are used for the model. The combined effects of hydrophobic patterns as computed by the signal analysis technique, recurrence quantification, plus calculated net charge were included in a function emphasizing the effect of singular hydrophobic patches which were found to be statistically significant for predicting aggregation propensity as quantified by fluorescence studies obtained from the literature. These results suggest preliminary evidence for a mesoscopic principle for protein folding/aggregation. (C) 2004 Elsevier B.V. All rights reserved Y1 - 2004 SN - 0378-4371 ER - TY - JOUR A1 - Zaritsky, Dennis A1 - Courtois, Helene A1 - Munoz-Mateos, Juan-Carlos A1 - Sorce, Jenny A1 - Erroz-Ferrer, S. A1 - Comeron, S. A1 - Gadotti, D. A. A1 - Gil De Paz, A. A1 - Hinz, J. L. A1 - Laurikainen, E. A1 - Kim, T. A1 - Laine, J. A1 - Menendez-Delmestre, K. A1 - Mizusawa, T. A1 - Regan, M. W. A1 - Salo, H. A1 - Seibert, M. A1 - Sheth, K. A1 - Athanassoula, E. A1 - Bosma, A. A1 - Cisternas, M. A1 - Ho, Luis C. A1 - Holwerda, B. T1 - The baryonic Tully-Fisher relationship for S(4)G galaxies and the "condensed" baryon fraction of galaxies JF - The astronomical journal N2 - We combine data from the Spitzer Survey for Stellar Structure in Galaxies, a recently calibrated empirical stellar mass estimator from Eskew et al., and an extensive database of Hi spectral line profiles to examine the baryonic Tully-Fisher (BTF) relation. We find (1) that the BTF has lower scatter than the classic Tully-Fisher (TF) relation and is better described as a linear relationship, confirming similar previous results, (2) that the inclusion of a radial scale in the BTF decreases the scatter but only modestly, as seen previously for the TF relation, and (3) that the slope of the BTF, which we find to be 3.5 +/- 0.2 (Delta log M-baryon/Delta log v(c)), implies that on average a nearly constant fraction (similar to 0.4) of all baryons expected to be in a halo are "condensed" onto the central region of rotationally supported galaxies. The condensed baryon fraction, M-baryon/M-total, is, to our measurement precision, nearly independent of galaxy circular velocity (our sample spans circular velocities, vc, between 60 and 250 km s(-1), but is extended to v(c) similar to 10 km s(-1) using data from the literature). The observed galaxy-to-galaxy scatter in this fraction is generally <= a factor of 2 despite fairly liberal selection criteria. These results imply that cooling and heating processes, such as cold versus hot accretion, mass loss due to stellar winds, and active galactic nucleus driven feedback, to the degree that they affect the global galactic properties involved in the BTF, are independent of halo mass for galaxies with 10 < v(c) < 250 km s(-1) and typically introduce no more than a factor of two range in the resulting M-baryon/M-total. Recent simulations by Aumer et al. of a small sample of disk galaxies are in excellent agreement with our data, suggesting that current simulations are capable of reproducing the global properties of individual disk galaxies. More detailed comparison to models using the BTF holds great promise, but awaits improved determinations of the stellar masses. KW - galaxies: evolution KW - galaxies: formation KW - galaxies: fundamental parameters KW - galaxies: stellar content KW - galaxies: structure Y1 - 2014 U6 - https://doi.org/10.1088/0004-6256/147/6/134 SN - 0004-6256 SN - 1538-3881 VL - 147 IS - 6 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Zaragoza-Cardiel, Javier A1 - Gómez-González, Víctor Mauricio Alfonso A1 - Mayya, Yalia Divakara A1 - Ramos-Larios, Gerardo T1 - Nebular abundance gradient in the Cartwheel galaxy using MUSE data JF - Monthly notices of the Royal Astronomical Society N2 - We here present the results from a detailed analysis of nebular abundances of commonly observed ions in the collisional ring galaxy Cartwheel using the Very Large Telescope (VLT) Multi-Unit Spectroscopic Explorer (MUSE) data set. The analysis includes 221 H II regions in the star-forming ring, in addition to 40 relatively fainter H a-emitting regions in the spokes, disc, and the inner ring. The ionic abundances of He, N, O, and Fe are obtained using the direct method (DM) for 9, 20, 20, and 17 ring H II regions, respectively, where the S++ temperature-sensitive line is detected. For the rest of the regions, including all the nebulae between the inner and the outer ring, we obtained O abundances using the strong-line method (SLM). The ring regions have a median 12 + log O/H = 8.19 +/- 0.15, log N/O = -1.57 +/- 0.09 and log Fe/O = -2.24 +/- 0.09 using the DM. Within the range of O abundances seen in the Cartwheel, the N/O and Fe/O values decrease proportionately with increasing O, suggesting local enrichment of O without corresponding enrichment of primary N and Fe. The O abundances of the disc H II regions obtained using the SLM show a well-defined radial gradient. The mean O abundance of the ring H II regions is lower by similar to 0.1 dex as compared to the extrapolation of the radial gradient. The observed trends suggest the preservation of the pre-collisional abundance gradient, displacement of most of the processed elements to the ring, as predicted by the recent simulation by Renaud et al., and post-collisional infall of metal-poor gas in the ring. KW - galaxies: star clusters KW - galaxies: individual KW - galaxies: abundances Y1 - 2022 U6 - https://doi.org/10.1093/mnras/stac1423 SN - 0035-8711 SN - 1365-2966 VL - 514 IS - 2 SP - 1689 EP - 1705 PB - Oxford University Press CY - Oxford ER - TY - JOUR A1 - Zapata-Arteaga, Osnat A1 - Marina, Sara A1 - Zuo, Guangzheng A1 - Xu, Kai A1 - Dörling, Bernhard A1 - Alberto Pérez, Luis A1 - Sebastián Reparaz, Juan A1 - Martín, Jaime A1 - Kemerink, Martijn A1 - Campoy-Quiles, Mariano T1 - Design rules for polymer blends with high thermoelectric performance JF - Advanced energy materials N2 - A combinatorial study of the effect of in-mixing of various guests on the thermoelectric properties of the host workhorse polymer poly[2,5-bis(3-tetradecylthiophen-2-yl)thieno[3,2-b]thiophene] (PBTTT) is presented. Specifically, the composition and thickness for doped films of PBTTT blended with different polymers are varied. Some blends at guest weight fractions around 10-15% exhibit up to a fivefold increase in power factor compared to the reference material, leading to zT values around 0.1. Spectroscopic analysis of the charge-transfer species, structural characterization using grazing-incidence wide-angle X-ray scattering, differential scanning calorimetry, Raman, and atomic force microscopy, and Monte Carlo simulations are employed to determine that the key to improved performance is for the guest to promote long-range electrical connectivity and low disorder, together with similar highest occupied molecular orbital levels for both materials in order to ensure electronic connectivity are combined. KW - doping KW - microstructure KW - organic thermoelectrics KW - orientation KW - ternary Y1 - 2022 U6 - https://doi.org/10.1002/aenm.202104076 SN - 1614-6832 SN - 1614-6840 VL - 12 IS - 19 PB - Wiley CY - Weinheim ER - TY - JOUR A1 - Zamponi, Flavio A1 - Penfold, Thomas J. A1 - Nachtegaal, Maarten A1 - Luebcke, Andrea A1 - Rittmann, Jochen A1 - Milne, Chris J. A1 - Chergui, Majed A1 - van Bokhoven, Jeroen A. T1 - Probing the dynamics of plasmon-excited hexanethiol-capped gold nanoparticles by picosecond X-ray absorption spectroscopy JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - Picosecond X-ray absorption spectroscopy (XAS) is used to investigate the electronic and structural dynamics initiated by plasmon excitation of 1.8 nm diameter Au nanoparticles (NPs) functionalised with 1-hexanethiol. We show that 100 ps after photoexcitation the transient XAS spectrum is consistent with an 8% expansion of the Au-Au bond length and a large increase in disorder associated with melting of the NPs. Recovery of the ground state occurs with a time constant of similar to 1.8 ns, arising from thermalisation with the environment. Simulations reveal that the transient spectrum exhibits no signature of charge separation at 100 ps and allows us to estimate an upper limit for the quantum yield (QY) of this process to be <0.1. Y1 - 2014 U6 - https://doi.org/10.1039/c4cp03301a SN - 1463-9076 SN - 1463-9084 VL - 16 IS - 42 SP - 23157 EP - 23163 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Zamponi, Flavio A1 - Ansari, Zunaira A1 - von Korff Schmising, Clemens A1 - Rothhardt, Philip A1 - Zhavoronkov, Nickolai A1 - Woerner, Michael A1 - Elsaesser, Thomas A1 - Bargheer, Matias A1 - Trobitzsch-Ryll, Timo A1 - Haschke, Michael T1 - Femtosecond hard X-ray plasma sources with a kilohertz repetition rate N2 - Laser-driven plasma sources of femtosecond hard X-ray pulses have found widespread application in ultrafast X- ray diffraction. The recent development of plasma sources working at kilohertz repetition rates has allowed for diffraction experiments with strongly improved sensitivity, now revealing subtle fully reversible changes of the geometry of crystal lattices. We provide a brief review of this development and present a novel plasma source with an optimized mechanical and optical design, providing a high flux of several 10(10) photons/s at the Cu-K alpha energy of 8.04 keV and a pulse duration of a parts per thousand currency sign300 fs. First experiments, including the generation of Debye-Scherrer diffraction patterns from Si powder, demonstrate the high performance of this source. Y1 - 2009 UR - http://www.springerlink.com/content/100501 U6 - https://doi.org/10.1007/s00339-009-5171-9 SN - 0947-8396 ER - TY - JOUR A1 - Zalden, Peter A1 - Quirin, Florian A1 - Schumacher, Mathias A1 - Siegel, Jan A1 - Wei, Shuai A1 - Koc, Azize A1 - Nicoul, Matthieu A1 - Trigo, Mariano A1 - Andreasson, Pererik A1 - Enquist, Henrik A1 - Shu, Michael J. A1 - Pardini, Tommaso A1 - Chollet, Matthieu A1 - Zhu, Diling A1 - Lemke, Henrik A1 - Ronneberger, Ider A1 - Larsson, Jörgen A1 - Lindenberg, Aaron M. A1 - Fischer, Henry E. A1 - Hau-Riege, Stefan A1 - Reis, David A. A1 - Mazzarello, Riccardo A1 - Wuttig, Matthias A1 - Sokolowski-Tinten, Klaus T1 - Femtosecond x-ray diffraction reveals a liquid-liquid phase transition in phase-change materials JF - Science N2 - In phase-change memory devices, a material is cycled between glassy and crystalline states. The highly temperature-dependent kinetics of its crystallization process enables application in memory technology, but the transition has not been resolved on an atomic scale. Using femtosecond x-ray diffraction and ab initio computer simulations, we determined the time-dependent pair-correlation function of phase-change materials throughout the melt-quenching and crystallization process. We found a liquid-liquid phase transition in the phase-change materials Ag4In3Sb67Te26 and Ge15Sb85 at 660 and 610 kelvin, respectively. The transition is predominantly caused by the onset of Peierls distortions, the amplitude of which correlates with an increase of the apparent activation energy of diffusivity. This reveals a relationship between atomic structure and kinetics, enabling a systematic optimization of the memory-switching kinetics. Y1 - 2019 U6 - https://doi.org/10.1126/science.aaw1773 SN - 0036-8075 SN - 1095-9203 VL - 364 IS - 6445 SP - 1062 EP - 1067 PB - American Assoc. for the Advancement of Science CY - Washington, DC ER - TY - JOUR A1 - Zaks, Michael A1 - Pikovskij, Arkadij T1 - Chimeras and complex cluster states in arrays of spin-torque oscillators JF - Scientific reports N2 - We consider synchronization properties of arrays of spin-torque nano-oscillators coupled via an RC load. We show that while the fully synchronized state of identical oscillators may be locally stable in some parameter range, this synchrony is not globally attracting. Instead, regimes of different levels of compositional complexity are observed. These include chimera states (a part of the array forms a cluster while other units are desynchronized), clustered chimeras (several clusters plus desynchronized oscillators), cluster state (all oscillators form several clusters), and partial synchronization (no clusters but a nonvanishing mean field). Dynamically, these states are also complex, demonstrating irregular and close to quasiperiodic modulation. Remarkably, when heterogeneity of spin-torque oscillators is taken into account, dynamical complexity even increases: close to the onset of a macroscopic mean field, the dynamics of this field is rather irregular. Y1 - 2017 U6 - https://doi.org/10.1038/s41598-017-04918-9 SN - 2045-2322 VL - 7 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Zaks, Michael A. A1 - Tomov, Petar T1 - Onset of time dependence in ensembles of excitable elements with global repulsive coupling JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We consider the effect of global repulsive coupling on an ensemble of identical excitable elements. An increase of the coupling strength destabilizes the synchronous equilibrium and replaces it with many attracting oscillatory states, created in the transcritical heteroclinic bifurcation. The period of oscillations is inversely proportional to the distance from the critical parameter value. If the elements interact with the global field via the first Fourier harmonics of their phases, the stable equilibrium is in one step replaced by the attracting continuum of periodic motions. Y1 - 2016 U6 - https://doi.org/10.1103/PhysRevE.93.020201 SN - 2470-0045 SN - 2470-0053 VL - 93 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Zaks, Michael A. A1 - Rosenblum, Michael A1 - Pikovskij, Arkadij A1 - Osipov, Grigory V. A1 - Kurths, Jürgen T1 - Phase synchronization of chaotic oscillations in terms of periodic orbits Y1 - 1997 SN - 1054-1500 ER - TY - JOUR A1 - Zaks, Michael A. A1 - Pikovskij, Arkadij A1 - Kurths, Jürgen T1 - On the generalized dimensions for the fourier spectrum of the thue-morse sequence Y1 - 1999 ER - TY - JOUR A1 - Zaks, Michael A. A1 - Pikovskij, Arkadij A1 - Kurths, Jürgen T1 - Symbolic dynamics behind the singular continuous power spectra of continuous flows Y1 - 1998 ER - TY - JOUR A1 - Zaks, Michael A. A1 - Pikovskij, Arkadij A1 - Kurths, Jürgen T1 - On the correlation dimension of the spectral measure for the Thue-Morse sequence Y1 - 1997 ER - TY - JOUR A1 - Zaks, Michael A. A1 - Pikovskij, Arkadij T1 - Synchrony breakdown and noise-induced oscillation death in ensembles of serially connected spin-torque oscillators JF - The European physical journal : B, Condensed matter and complex systems N2 - We consider collective dynamics in the ensemble of serially connected spin-torque oscillators governed by the Landau-Lifshitz-Gilbert-Slonczewski magnetization equation. Proximity to homoclinicity hampers synchronization of spin-torque oscillators: when the synchronous ensemble experiences the homoclinic bifurcation, the growth rate per oscillation of small deviations from the ensemble mean diverges. Depending on the configuration of the contour, sufficiently strong common noise, exemplified by stochastic oscillations of the current through the circuit, may suppress precession of the magnetic field for all oscillators. We derive the explicit expression for the threshold amplitude of noise, enabling this suppression. KW - Statistical and Nonlinear Physics Y1 - 2019 U6 - https://doi.org/10.1140/epjb/e2019-100152-2 SN - 1434-6028 SN - 1434-6036 VL - 92 IS - 7 PB - Springer CY - New York ER - TY - JOUR A1 - Zaks, Michael A. A1 - Pikovskij, Arkadij T1 - Chimeras and complex cluster states in arrays of spin-torque oscillators JF - Scientific reports N2 - We consider synchronization properties of arrays of spin-torque nano-oscillators coupled via an RC load. We show that while the fully synchronized state of identical oscillators may be locally stable in some parameter range, this synchrony is not globally attracting. Instead, regimes of different levels of compositional complexity are observed. These include chimera states (a part of the array forms a cluster while other units are desynchronized), clustered chimeras (several clusters plus desynchronized oscillators), cluster state (all oscillators form several clusters), and partial synchronization (no clusters but a nonvanishing mean field). Dynamically, these states are also complex, demonstrating irregular and close to quasiperiodic modulation. Remarkably, when heterogeneity of spin-torque oscillators is taken into account, dynamical complexity even increases: close to the onset of a macroscopic mean field, the dynamics of this field is rather irregular. Y1 - 2017 U6 - https://doi.org/10.1038/s41598-017-04918-9 SN - 2045-2322 VL - 7 PB - Macmillan Publishers Limited CY - London ER - TY - JOUR A1 - Zaks, Michael A. A1 - Park, Eun Hyoung A1 - Kurths, Jürgen T1 - On phase synchronization by periodic force in chaotic oscillators with saddle equilibria Y1 - 2000 ER - TY - JOUR A1 - Zakrevskyy, Yuriy A1 - Titov, Evgenii A1 - Lomadze, Nino A1 - Santer, Svetlana T1 - Phase diagrams of DNA-photosensitive surfactant complexes: Effect of ionic strength and surfactant structure JF - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr N2 - Realization of all-optically controlled and efficient DNA compaction is the major motivation in the study of interactions between DNA and photosensitive surfactants. In this article, using recently published approach of phase diagram construction [Y. Zakrevskyy, P. Cywinski, M. Cywinska, J. Paasche, N. Lomadze, O. Reich, H.-G. Lohmannsroben, and S. Santer, J. Chem. Phys. 140, 044907 (2014)], a strategy for substantial reduction of compaction agent concentration and simultaneous maintaining the light-induced decompaction efficiency is proposed. The role of ionic strength (NaCl concentration), as a very important environmental parameter, and surfactant structure (spacer length) on the changes of positions of phase transitions is investigated. Increase of ionic strength leads to increase of the surfactant concentration needed to compact DNA molecule. However, elongation of the spacer results to substantial reduction of this concentration. DNA compaction by surfactants with longer tails starts to take place in diluted solutions at charge ratios Z < 1 and is driven by azobenzene-aggregation compaction mechanism, which is responsible for efficient decompaction. Comparison of phase diagrams for different DNA-photosensitive surfactant systems allowed explanation and proposal of a strategy to overcome previously reported limitations of the light-induced decompaction for complexes with increasing surfactant hydrophobicity. (C) 2014 AIP Publishing LLC. Y1 - 2014 U6 - https://doi.org/10.1063/1.4899281 SN - 0021-9606 SN - 1089-7690 VL - 141 IS - 16 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Zakrevskyy, Yuriy A1 - Roxlau, Julian A1 - Brezesinski, Gerald A1 - Lomadze, Nino A1 - Santer, Svetlana T1 - Photosensitive surfactants: Micellization and interaction with DNA JF - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr N2 - Recently, photosensitive surfactants have re-attracted considerable attention. It has been shown that their association with oppositely charged biologically important polyelectrolytes, such as DNA or microgels, can be efficiently manipulated simply by light exposure. In this article, we investigate the self-assembly of photosensitive surfactants as well as their interactions with DNA by calorimetric and spectroscopic methods. Critical micelle concentration (CMC), standard micellization enthalpy, entropy, and Gibbs energy were determined in different conditions (ionic strengths and temperatures) for a series of cationic surfactants with an azobenzene group in their tail. It is shown, that aggregation forces of photosensitive units play an important role in the micellization giving the major contribution to the micellization enthalpy. The onset of the aggregation can be traced from shift of the absorption peak position in the UV-visible spectrum. Titration UV-visible spectroscopy is used as an alternative, simple, and sensitive approach to estimate CMC. The titration UV-visible spectroscopy was also employed to investigate interactions (CAC: critical aggregation concentration, precipitation, and colloidal stabilization) in the DNA-surfactant complex. Y1 - 2014 U6 - https://doi.org/10.1063/1.4862678 SN - 0021-9606 SN - 1089-7690 VL - 140 IS - 4 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Zakrevskyy, Yuriy A1 - Richter, Marcel A1 - Zakrevska, Svitlana A1 - Lomadze, Nino A1 - von Klitzing, Regine A1 - Santer, Svetlana T1 - Light-controlled reversible manipulation of microgel particle size using azobenzene-containing surfactant JF - Advanced functional materials N2 - The light-induced reversible switching of the swelling of microgel particles triggered by photo-isomerization and binding/unbinding of a photosensitive azobenzene-containing surfactant is reported. The interactions between the microgel (N-isopropylacrylamide, co-monomer: allyl acetic acid, crosslinker: N,N'-methylenebisacrylamide) and the surfactant are studied by UV-Vis spectroscopy, dynamic and electrophoretic light scattering measurements. Addition of the surfactant above a critical concentration leads to contraction/collapse of the microgel. UV light irradiation results in trans-cis isomerization of the azobenzene unit incorporated into the surfactant tail and causes an unbinding of the more hydrophilic cis isomer from the microgel and its reversible swelling. The reversible contraction can be realized by blue light irradiation that transfers the surfactant back to the more hydrophobic trans conformation, in which it binds to the microgel. The phase diagram of the surfactant-microgel interaction and transitions (aggregation, contraction, and precipitation) is constructed and allows prediction of changes in the system when the concentration of one or both components is varied. Remote and reversible switching between different states can be realized by either UV or visible light irradiation. Y1 - 2012 U6 - https://doi.org/10.1002/adfm.201200617 SN - 1616-301X VL - 22 IS - 23 SP - 5000 EP - 5009 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Zakrevskyy, Yuriy A1 - Kopyshev, Alexey A1 - Lomadze, Nino A1 - Morozova, Elena A1 - Lysyakova, Liudmila A1 - Kasyanenko, Nina A1 - Santer, Svetlana T1 - DNA compaction by azobenzene-containing surfactant JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We report on the interaction of cationic azobenzene-containing surfactant with DNA investigated by absorption and fluorescence spectroscopy, dynamic light scattering, and atomic force microscopy. The properties of the surfactant can be controlled with light by reversible switching of the azobenzene unit, incorporated into the surfactant tail, between a hydrophobic trans (visible irradiation) and a hydrophilic cis (UV irradiation) configuration. The influence of the trans-cis isomerization of the azobenzene on the compaction process of DNA molecules and the role of both isomers in the formation and colloidal stability of DNA-surfactant complexes is discussed. It is shown that the trans isomer plays a major role in the DNA compaction process. The influence of the cis isomer on the DNA coil configuration is rather small. The construction of a phase diagram of the DNA concentration versus surfactant/DNA charge ratio allows distancing between three major phases: colloidally stable and unstable compacted globules, and extended coil conformation. There is a critical concentration of DNA above which the compacted globules can be hindered from aggregation and precipitation by adding an appropriate amount of the surfactant in the trans configuration. This is because of the compensation of hydrophobicity of the globules with an increasing amount of the surfactant. Below the critical DNA concentration, the compacted globules are colloidally stable and can be reversibly transferred with light to an extended coil state. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevE.84.021909 SN - 1539-3755 VL - 84 IS - 2 PB - American Physical Society CY - College Park ER -