TY - THES A1 - Zakharova, Olga T1 - Analysis and modeling of transient earthquake patterns and their dependence on local stress regimes T1 - Analyse und Modellierung der transienten Erdbebenmuster und deren Abhängigkeit von lokalen Spannungsregimen N2 - Investigations in the field of earthquake triggering and associated interactions, which includes aftershock triggering as well as induced seismicity, is important for seismic hazard assessment due to earthquakes destructive power. One of the approaches to study earthquake triggering and their interactions is the use of statistical earthquake models, which are based on knowledge of the basic seismicity properties, in particular, the magnitude distribution and spatiotemporal properties of the triggered events. In my PhD thesis I focus on some specific aspects of aftershock properties, namely, the relative seismic moment release of the aftershocks with respect to the mainshocks; the spatial correlation between aftershock occurrence and fault deformation; and on the influence of aseismic transients on the aftershock parameter estimation. For the analysis of aftershock sequences I choose a statistical approach, in particular, the well known Epidemic Type Aftershock Sequence (ETAS) model, which accounts for the input of background and triggered seismicity. For my specific purposes, I develop two ETAS model modifications in collaboration with Sebastian Hainzl. By means of this approach, I estimate the statistical aftershock parameters and performed simulations of aftershock sequences as well. In the case of seismic moment release of aftershocks, I focus on the ratio of cumulative seismic moment release with respect to the mainshocks. Specifically, I investigate the ratio with respect to the focal mechanism of the mainshock and estimate an effective magnitude, which represents the cumulative aftershock energy (similar to Bath's law, which defines the average difference between mainshock and the largest aftershock magnitudes). Furthermore, I compare the observed seismic moment ratios with the results of the ETAS simulations. In particular, I test a restricted ETAS (RETAS) model which is based on results of a clock advanced model and static stress triggering. To analyze spatial variations of triggering parameters I focus in my second approach on the aftershock occurrence triggered by large mainshocks and the study of the aftershock parameter distribution and their spatial correlation with the coseismic/postseismic slip and interseismic locking. To invert the aftershock parameters I improve the modified ETAS (m-ETAS) model, which is able to take the extension of the mainshock rupture into account. I compare the results obtained by the classical approach with the output of the m-ETAS model. My third approach is concerned with the temporal clustering of seismicity, which might not only be related to earthquake-earthquake interactions, but also to a time-dependent background rate, potentially biasing the parameter estimations. Thus, my coauthors and I also applied a modification of the ETAS model, which is able to take into account time-dependent background activity. It can be applicable for two different cases: when an aftershock catalog has a temporal incompleteness or when the background seismicity rate changes with time, due to presence of aseismic forces. An essential part of any research is the testing of the developed models using observational data sets, which are appropriate for the particular study case. Therefore, in the case of seismic moment release I use the global seismicity catalog. For the spatial distribution of triggering parameters I exploit two aftershock sequences of the Mw8.8 2010 Maule (Chile) and Mw 9.0 2011 Tohoku (Japan) mainshocks. In addition, I use published geodetic slip models of different authors. To test our ability to detect aseismic transients my coauthors and I use the data sets from Western Bohemia (Central Europe) and California. Our results indicate that: (1) the seismic moment of aftershocks with respect to mainshocks depends on the static stress changes and is maximal for the normal, intermediate for thrust and minimal for strike-slip stress regimes, where the RETAS model shows a good correspondence with the results; (2) The spatial distribution of aftershock parameters, obtained by the m-ETAS model, shows anomalous values in areas of reactivated crustal fault systems. In addition, the aftershock density is found to be correlated with coseismic slip gradient, afterslip, interseismic coupling and b-values. Aftershock seismic moment is positively correlated with the areas of maximum coseismic slip and interseismically locked areas. These correlations might be related to the stress level or to material properties variations in space; (3) Ignoring aseismic transient forcing or temporal catalog incompleteness can lead to the significant under- or overestimation of the underlying trigger parameters. In the case when a catalog is complete, this method helps to identify aseismic sources. N2 - Untersuchungen im Bereich der Erdbebennukleation, sowie der Erdbebeninteraktion und induzierter Seismizität, sind wegen des enormen Zerstörungspotenzials von Erdbeben besonders wichtig für seismische Gefährdungsanalysen. In meiner Doktorarbeit fokussiere ich mich auf einige Eigenschaften von Nachbeben, insbesondere auf deren freigesetztes seismisches Moment in Relation zum Hauptbeben, die räumliche Korrelation zwischen der Nachbebenaktivität und der Deformationsgeschichte der Verwerfung und den Einfluss von aseismischen Transienten auf die Bestimmung von Nachbebenparametern. Ich habe einen statistischen Ansatz für die Analyse der Nachbebensequenzen gewählt. Das sogenannte Epidemic Type Aftershock Sequence (ETAS) Modell berücksichtigt sowohl Hintergrundseismizität als auch getriggerte Erdbebenaktivität. Für meine Zwecke habe ich zusammen mit Sebastian Hainzl zwei Modifikationen für dieses ETAS Modell entwickelt. Mittels dieser Ansätze habe ich die statistischen Parameter der Nachbebenaktivität bestimmt und Simulationen von Nachbebensequenzen durchgeführt. Im Falle des freigesetzten seismischen Moments von Nachbeben habe ich das Verhältnis des kummulativen Moments der Nachbeben in Bezug zum Hauptbeben untersucht. Im Speziellen betrachte ich das Verhältnis in Bezug auf den Herdmechanismus des Hauptbebens und bestimme eine effektive Magnitude, welche die kummulative Nachbebenenergie darstellt (ähnlich zu Bath's Gesetz, welches den durchschnittlichen Unterschied zwischen der Hauptbebenmagnitude und der Magnitude des größten Nachbebens beschreibt). Desweiteren vergleiche ich das Verhältnis des beobachteten seismischen Moments mit den Ergebnissen von ETAS-basierten Simulationen. Dabei teste ich ein Restricted ETAS (RETAS) Modell, welches auf den Resultaten eines Clock-Advance Modells und den durch das Hauptbeben ausgelösten statischen Spannungsänderungen basiert. Um die räumliche Variation der Trigger-Parameter zu analysieren, fokussiere ich mich in meinem zweiten Modellansatz auf das Auftreten von Nachbeben infolge von großen Hauptbeben, sowie die Verteilung von Nachbebenparametern und deren räumliche Korrelation mit ko-/post-seismischen Verschiebungen und inter-seismischer Verhakung. Zum Bestimmen der Nachbebenparameter habe ich ein modifiziertes ETAS (m-ETAS) Modell analysiert, welches die räumliche Ausdehnung des Hauptbebenbruches berücksichtigen kann. Ich vergleiche die Ergebnisse des klassischen Ansatzes mit denen des m-ETAS Modells. Mein dritter Versuch beschäftigt sich mit dem zeitlichen Clustern der Seismizität, welche nicht nur auf Erdbeben-Erdbeben-Interaktion zurückzuführen ist, sondern auch auf eine zeitabhängige Hintergrundrate, die die Parameterabschätzung verfälschen kann. Meine Koautoren und ich haben dem ETAS Modell darum eine weitere Modifikation hinzugefügt, welche in der Lage ist, eine zeitabhängige Hintergrundaktivität einzubeziehen. Dieses Modell kann auf zwei Fälle angewendet werden, einerseits wenn ein Erdbebenkatalog zeitlich unvollständig ist und andererzeits wenn sich die Hintergrundseismizität, durch Vorhandensein aseismischer Kräfte, zeitlich verändert. Ein wichtiger Teil dieser Forschung ist es die entwickelten Modelle anhand von beobachteten Daten zu testen. Darum benutze ich im Falle des freigesetzten seismischen Moments einen globalen Erdbebenkatalog. Zur Bestimmung der räumlichen Verteilung von Trigger-Parametern untersuche ich zwei Nachbebensequenzen, die des 2010er Maule (Chile) Mw8.8 Erdbebens und die des 2011er Tohoku (Japan) Mw9.0 Erdbebens. Zusätzlich benutze ich publizierte geodätische Verschiebungsmodelle verschiedener Autoren. Um die Detektionsfähigkeit für aseismische Transienten zu testen, benutzen meine Koautoren und ich Daten aus West-Böhmen (Zentraleuropa) und Kalifornien. Unsere Ergebnisse zeigen: (1) Das Verhältnis des kumulativen seismischen Moments der Nachbeben zum Hauptbeben ist von den statischen Spannungsänderung abhängig und ist maximal in Spannungsregimen dominiert von Abschiebungen, mittel für Überschiebungen und minimal für Blattverschiebungen, wobei das RETAS Modell eine gute Korrelation mit unseren Ergebnissen zeigt. (2) Die mit dem m-ETAS Modell erhaltene räumliche Verteilung von Nachbebenparametern zeigt ungewöhnliche Werte in Gebieten reaktivierter krustaler Verwerfungssysteme. Zusätzlich fanden wir heraus, dass die Nachbebendichte mit dem ko-seismischen Verschiebungsgradienten, Nachkriechen, inter-seismischer Kopplung und b-Werten korreliert. Das seismische Moment untersuchter Nachbeben ist positiv korreliert mit Bereichen maximaler koseismischer Verschiebungen und interseismisch blockierten Bereichen. Diese Korrelation könnte dem Spannungsniveau oder räumlicher Variation der Materialeigenschaften geschuldet sein. (3) Wenn man aseismische transiente Kräfte oder zeitliche Katalogunvollständigkeit ignoriert, kann das zu signifikantem Unter- oder Überschätzen der zugrunde liegenden Seismizitäts-Parametern führen. Im Fall eines kompletten Katalogs kann diese Methode helfen, aseismische Quellen zu identifizieren. KW - aftershocks KW - statistical seismology KW - transient earthquake patterns KW - ETAS model KW - uncertainty estimation KW - statistische Seismologie KW - Nachbeben KW - transiente Erdbebenmuster KW - ETAS Modell KW - Abschätzung der Unsicherheiten Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-86455 ER - TY - JOUR A1 - Zajnulina, Marina A1 - Böhm, Michael A1 - Blow, K. A1 - Rieznik, A. A. A1 - Giannone, Domenico A1 - Haynes, Roger A1 - Roth, Martin M. T1 - Soliton radiation beat analysis of optical pulses generated from two continuous-wave lasers JF - Chaos : an interdisciplinary journal of nonlinear science N2 - We propose a fibre-based approach for generation of optical frequency combs (OFCs) with the aim of calibration of astronomical spectrographs in the low and medium-resolution range. This approach includes two steps: in the first step, an appropriate state of optical pulses is generated and subsequently moulded in the second step delivering the desired OFC. More precisely, the first step is realised by injection of two continuous-wave (CW) lasers into a conventional single-mode fibre, whereas the second step generates a broad OFC by using the optical solitons generated in step one as initial condition. We investigate the conversion of a bichromatic input wave produced by two initial CW lasers into a train of optical solitons, which happens in the fibre used as step one. Especially, we are interested in the soliton content of the pulses created in this fibre. For that, we study different initial conditions (a single cosine-hump, an Akhmediev breather, and a deeply modulated bichromatic wave) by means of soliton radiation beat analysis and compare the results to draw conclusion about the soliton content of the state generated in the first step. In case of a deeply modulated bichromatic wave, we observed the formation of a collective soliton crystal for low input powers and the appearance of separated solitons for high input powers. An intermediate state showing the features of both, the soliton crystal and the separated solitons, turned out to be most suitable for the generation of OFC for the purpose of calibration of astronomical spectrographs. Y1 - 2015 U6 - https://doi.org/10.1063/1.4930316 SN - 1054-1500 SN - 1089-7682 VL - 25 IS - 10 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Zajnulina, Marina A1 - Boggio, Jose M. Chavez A1 - Böhm, Michael A1 - Rieznik, A. A. A1 - Fremberg, Tino A1 - Haynes, Roger A1 - Roth, Martin M. T1 - Generation of optical frequency combs via four-wave mixing processes for low- and medium-resolution astronomy JF - Applied physics : B, Lasers and optics N2 - We investigate the generation of optical frequency combs through a cascade of four-wave mixing processes in nonlinear fibres with optimised parameters. The initial optical field consists of two continuous-wave lasers with frequency separation larger than 40 GHz (312.7 pm at 1531 nm). It propagates through three nonlinear fibres. The first fibre serves to pulse shape the initial sinusoidal-square pulse, while a strong pulse compression down to sub-100 fs takes place in the second fibre which is an amplifying erbium-doped fibre. The last stage is a low-dispersion highly nonlinear fibre where the frequency comb bandwidth is increased and the line intensity is equalised. We model this system using the generalised nonlinear Schrodinger equation and investigate it in terms of fibre lengths, fibre dispersion, laser frequency separation and input powers with the aim to minimise the frequency comb noise. With the support of the numerical results, a frequency comb is experimentally generated, first in the near infra-red and then it is frequency-doubled into the visible spectral range. Using a MUSE-type spectrograph, we evaluate the comb performance for astronomical wavelength calibration in terms of equidistancy of the comb lines and their stability. Y1 - 2015 U6 - https://doi.org/10.1007/s00340-015-6121-1 SN - 0946-2171 SN - 1432-0649 VL - 120 IS - 1 SP - 171 EP - 184 PB - Springer CY - New York ER - TY - THES A1 - Zajnulina, Marina T1 - Optical frequency comb generation in optical fibres T1 - Generierung von optischen Frequenzkämmen in optischen Fasern N2 - Optical frequency combs (OFC) constitute an array of phase-correlated equidistant spectral lines with nearly equal intensities over a broad spectral range. The adaptations of combs generated in mode-locked lasers proved to be highly efficient for the calibration of high-resolution (resolving power > 50000) astronomical spectrographs. The observation of different galaxy structures or the studies of the Milky Way are done using instruments in the low- and medium resolution range. To such instruments belong, for instance, the Multi Unit Spectroscopic Explorer (MUSE) being developed for the Very Large Telescope (VLT) of the European Southern Observatory (ESO) and the 4-metre Multi-Object Spectroscopic Telescope (4MOST) being in development for the ESO VISTA 4.1 m Telescope. The existing adaptations of OFC from mode-locked lasers are not resolvable by these instruments. Within this work, a fibre-based approach for generation of OFC specifically in the low- and medium resolution range is studied numerically. This approach consists of three optical fibres that are fed by two equally intense continuous-wave (CW) lasers. The first fibre is a conventional single-mode fibre, the second one is a suitably pumped amplifying Erbium-doped fibre with anomalous dispersion, and the third one is a low-dispersion highly nonlinear optical fibre. The evolution of a frequency comb in this system is governed by the following processes: as the two initial CW-laser waves with different frequencies propagate through the first fibre, they generate an initial comb via a cascade of four-wave mixing processes. The frequency components of the comb are phase-correlated with the original laser lines and have a frequency spacing that is equal to the initial laser frequency separation (LFS), i.e. the difference in the laser frequencies. In the time domain, a train of pre-compressed pulses with widths of a few pico-seconds arises out of the initial bichromatic deeply-modulated cosine-wave. These pulses undergo strong compression in the subsequent amplifying Erbium-doped fibre: sub-100 fs pulses with broad OFC spectra are formed. In the following low-dispersion highly nonlinear fibre, the OFC experience a further broadening and the intensity of the comb lines are fairly equalised. This approach was mathematically modelled by means of a Generalised Nonlinear Schrödinger Equation (GNLS) that contains terms describing the nonlinear optical Kerr effect, the delayed Raman response, the pulse self-steepening, and the linear optical losses as well as the wavelength-dependent Erbium gain profile for the second fibre. The initial condition equation being a deeply-modulated cosine-wave mimics the radiation of the two initial CW lasers. The numerical studies are performed with the help of Matlab scripts that were specifically developed for the integration of the GNLS and the initial condition according to the proposed approach for the OFC generation. The scripts are based on the Fourth-Order Runge-Kutta in the Interaction Picture Method (RK4IP) in combination with the local error method. This work includes the studies and results on the length optimisation of the first and the second fibre depending on different values of the group-velocity dispersion of the first fibre. Such length optimisation studies are necessary because the OFC have the biggest possible broadband and exhibit a low level of noise exactly at the optimum lengths. Further, the optical pulse build-up in the first and the second fibre was studied by means of the numerical technique called Soliton Radiation Beat Analysis (SRBA). It was shown that a common soliton crystal state is formed in the first fibre for low laser input powers. The soliton crystal continuously dissolves into separated optical solitons as the input power increases. The pulse formation in the second fibre is critically dependent on the features of the pulses formed in the first fibre. I showed that, for low input powers, an adiabatic soliton compression delivering low-noise OFC occurs in the second fibre. At high input powers, the pulses in the first fibre have more complicated structures which leads to the pulse break-up in the second fibre with a subsequent degradation of the OFC noise performance. The pulse intensity noise studies that were performed within the framework of this thesis allow making statements about the noise performance of an OFC. They showed that the intensity noise of the whole system decreases with the increasing value of LFS. N2 - Optische Frequenzkämme (OFK) stellen ein diskretes optisches Spektrum mit phasenkorrelierten Linien dar, die gleichen spektralen Abstand voneinander haben und fast gleiche Intensität über einen größeren Spektralbereich aufweisen. In modengelockten Lasern generierte Kämme haben sich als höchst effizient für die Kalibrierung von hochauflösenden (Auflösungsvermögen > 50000) astronomischen Spektrografen erwiesen. Die astronomische Beobachtung von verschiedenen Galaxie-Strukturen oder die Studien der Milchstraße werden jedoch mit Hilfe von nieder- bis mittelauflösenden Instrumenten gemacht. Zu solchen Instrumenten gehören zum Beispiel der Multi-Spectroscopic-Exproler (MUSE), der gerade für das Very-Large-Telescope (VLT) der Europäischen Südsternwarte (ESO) entwickelt wird, und das 4-metre-Multi-Object-Spectroscopic-Telescope (4MOST), das sich in der Entwicklung für das ESO-VISTA-4,1m-Teleskop befindet. Die existierenden Anpassungen von OFK von modengelockten Lasern sind für solche Instrumente nicht auflösbar. Im Rahmen dieser Arbeit wird ein faserbasierter Ansatz für die Generierung von OFK für den Bereich der nieder- bis mittelauflösenden Instrumente numerisch studiert. Die experimentelle Umsetzung dieses Ansatzes besteht aus drei optischen Fasern, in die das Strahlungsfeld von zwei Dauerstrichlasern mit gleicher Intensität eingespeist wird. Die erste Faser ist eine konventionelle Monomodefaser, die zweite ist eine Erbium-dotierte Verstärkerfaser mit negativer Dispersion, die dritte ist eine hoch nichtlineare Faser mit niedriger Dispersion. Die Entwicklung eines OFKs in diesem System geschieht auf folgende Art und Weise: als die Laserwellen mit verschiedenen Frequenzen sich durch die erste Faser ausbreiten, erzeugen sie einen Anfangskamm durch einen Kaskadenprozess der Vier-Wellen-Mischung (VWM). Die neu entstandenen Frequenzkomponenten des Kamms sind frequenzkorreliert und haben einen spektralen Abstand, der der Laserfrequenzseparation (LFS) gleicht. Dies entspricht dem Entstehen von einem Zug von prä-komprimierten optischen Impulsen mit Impulsbreiten von einigen Pikosekunden. Diese Impulse werden strakt komprimiert in der nachfolgenden Erbium-dotierten Faser: es entstehen Sub-100-Femtosekunden-Impulse mit breiten OFK-Spektren. In der anschließenden hochnichtlinearen Faser wird das Kamm-Spektrum weiter verbreitet, während seine Frequenzlinien in ihren Intensitäten ausgeglichen werden. Dieser Ansatz wurde mathematisch mit Hilfe einer Verallgemeinerten Nichtlinearen Schrödinger Gleichung (VNSG) modelliert, die die Terme für den nichtlinearen optischen Kerr-Effekt, den Raman-Effekt, die Impuls-Selbstaufsteilung, die optischen Verluste und das wellenlängenabhängigen Erbium-Verstärkungsprofil für die zweite Faser enthält. Die Gleichung der Anfangsbedingung von der Form einer bichromatischen tief durchmodulierten Kosinus-Welle repräsentiert das Strahlungsfeld zweier Dauerstrichlaser. Die numerischen Studien sind mit Hilfe von Matlab-Skripten durchgeführt, die speziell für die numerische Integration der VNSG mit der bichromatischen Kosinus-Welle als Anfangsbedingung entworfen worden sind. Diese Skripte basieren auf dem numerischen Verfahren Fourth-Order Runge-Kutta in the Interaction Picture Method, das mit der Methode der Auswertung von lokalen numerischen Fehlern kombiniert wurde. Diese Arbeit enthält die Studien und Resultate der Optimierung der Längen der ersten und der zweiten Faser in Abhängigkeit von der Gruppengeschwindigkeitsdispersion der ersten Faser. Solche Optimierungsstudien sind notwendig, da genau an solche optimierten Längen weisen die Frequenzkämme die größte Bandbreite auf sowie das niedrigste Rauschniveau. Des Weiteren wurde der Aufbau von optischen Impulsen in der ersten und der zweiten Faser des Ansatzes mittels der numerischen Technik Soliton Radiation Beat Analysis analysiert. Es wurde gezeigt, dass für niedrige Eingangsleistungen ein kollektiver Solitonenkristall in der ersten Faser generiert wird, der sich mit steigender Eingangsleistung in freie optische Solitonen auflöst. Was die zweite Faser betrifft, so wurde gezeigt, dass der Aufbau und Ausbreitung von optischen Impulsen in dieser Faser kritisch von den Eigenschaften der Impulse abhängt, die in der ersten Faser aufgebaut wurden. So findet adiabatische Solitonenkompression in der zweiten Faser statt, falls die Eingangsleistung niedrig ist und die Form der Impulse in der ersten Faser relativ einfach. Für höhere Eingangsleistungen ist der Aufbau und somit die Dynamik der Impulse in der ersten Faser komplizierter. Solche Impulse zerfallen dann in der zweiten Faser, was zum Erhöhen des Intensitätsrauschens führt. Die Studien des Intensitätsrauschens der optischen Impulse, die im Rahmen dieser Arbeit durchgeführt wurden, erlauben die Aussagen über das Rauschverhalten der OFK. Diese Studien haben gezeigt, dass das Intensitätsrauschen des Gesamtsystems (d.h. aller drei Fasern) mit steigender LFS nachlässt. KW - optical frequency combs KW - spectrograph calibration KW - generalised nonlinear Schrödinger equation KW - four-wave mixing KW - optical solitons KW - optische Frequenzkämme KW - Kalibrierung von Spektrografen KW - verallgemeinerte nichlineare Schrödinger Gleichung KW - Vier-Wellen-Mischung KW - optische Solitonen Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-88776 ER - TY - THES A1 - Zaccarella, Emiliano T1 - Breaking down complexity BT - the neural basis of the syntactic merge mechanism in the human brain T2 - MPI series human cognitive and brain sciences ; 175 N2 - The unbounded expressive capacity of human language cannot boil down to an infinite list of sentences stored in a finite brain. Our linguistic knowledge is rather grounded around a rule-based universal syntactic computation—called Merge—which takes categorized units in input (e.g. this and ship), and generates structures by binding words recursively into more complex hierarchies of any length (e.g. this ship; this ship sinks…). Here we present data from different fMRI datasets probing the cortical implementation of this fundamental process. We first pushed complexity down to a three-word level, to explore how Merge creates minimally hierarchical phrases and sentences. We then moved to the most fundamental two-word level, to directly assess the universal invariant nature of Merge, when no additive mechanisms are involved. Our most general finding is that Merge as the basic syntactic operation is primarily performed by confined area, namely BA 44 in the IFG. Activity reduces to its most ventral-anterior portion at the most fundamental level, following fine-grained sub-anatomical parcellation proposed for the region. The deep frontal operculum/anterior-dorsal insula (FOP/adINS), a phylogenetically older and less specialized region, rather appears to support word-accumulation processing in which the categorical information of the word is first accessed based on its lexical status, and then maintained on hold before further processing takes place. The present data confirm the general notion of BA 44 being activated as a function of complex structural hierarchy, but they go beyond this view by proposing that structural sensitivity in BA 44 is already appreciated at the lowest levels of complexity during which minimal phrase-structures are build up, and syntactic Merge is assessed. Further, they call for a redefinition of BA 44 from multimodal area to a macro-region with internal localizable functional profiles Y1 - 2015 SN - 978-3-941504-60-8 PB - Max-Planck-Institute CY - Leipzig ER - TY - THES A1 - Yuan, Jiayin T1 - Poly(Ionic Liquid)s BT - innovative polyelectrolytes for materials applications Y1 - 2015 ER - TY - JOUR A1 - Yokoyama, Kenichi A1 - Leimkühler, Silke T1 - The role of FeS clusters for molybdenum cofactor biosynthesis and molybdoenzymes in bacteria JF - Biochimica et biophysica acta : Molecular cell research N2 - The biosynthesis of the molybdenum cofactor (Moco) has been intensively studied, in addition to its insertion into molybdoenzymes. In particular, a link between the assembly of molybdoenzymes and the biosynthesis of FeS clusters has been identified in the recent years: 1) the synthesis of the first intermediate in Moco biosynthesis requires an FeS-cluster containing protein, 2) the sulfurtransferase for the dithiolene group in Moco is also involved in the synthesis of FeS clusters, thiamin and thiolated tRNAs, 3) the addition of a sulfido-ligand to the molybdenum atom in the active site additionally involves a sulfurtransferase, and 4) most molybdoenzymes in bacteria require FeS clusters as redox active cofactors. In this review we will focus on the biosynthesis of the molybdenum cofactor in bacteria, its modification and insertion into molybdoenzymes, with an emphasis to its link to FeS cluster biosynthesis and sulfur transfer. (C) 2014 Elsevier B.V. All rights reserved. KW - Molybdenum-iron-iron-sulfur cluster KW - Molybdenum cofactor KW - tRNA KW - Sulfur transfer KW - L-Cysteine desulfurase Y1 - 2015 U6 - https://doi.org/10.1016/j.bbamcr.2014.09.021 SN - 0167-4889 SN - 0006-3002 VL - 1853 IS - 6 SP - 1335 EP - 1349 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Yin, Zhong A1 - Rajkovic, Ivan A1 - Veedu, Sreevidya Thekku A1 - Deinert, Sascha A1 - Raiser, Dirk A1 - Jain, Rohit A1 - Fukuzawa, Hironobu A1 - Wada, Shin-ichi A1 - Quevedo, Wilson A1 - Kennedy, Brian A1 - Schreck, Simon A1 - Pietzsch, Annette A1 - Wernet, Philippe A1 - Ueda, Kyoshi A1 - Föhlisch, Alexander A1 - Techert, Simone T1 - Ionic solutions probed by resonant inelastic X-ray scattering JF - Zeitschrift für physikalische Chemie : international journal of research in physical chemistry and chemical physics N2 - X-ray spectroscopy is a powerful tool to study the local charge distribution of chemical systems. Together with the liquid jet it becomes possible to probe chemical systems in their natural environment, the liquid phase. In this work, we present X-ray absorption (XA), X-ray emission (XE) and resonant inelastic X-ray scattering (RIXS) data of pure water and various salt solutions and show the possibilities these methods offer to elucidate the nature of ion-water interaction. KW - X-ray Spectroscopy KW - XAS KW - XES KW - RIXS KW - Anions KW - Cations KW - Liquid Jet KW - Synchrotron Radiation Y1 - 2015 U6 - https://doi.org/10.1515/zpch-2015-0610 SN - 0942-9352 VL - 229 IS - 10-12 SP - 1855 EP - 1867 PB - De Gruyter CY - Berlin ER - TY - JOUR A1 - Yildirim-Semerci, Cigdem A1 - Benayahu, Dafna A1 - Adamovski, Miriam A1 - Wollenberger, Ursula T1 - An Electrochemical Assay for Monitoring Differentiation of the Osteoblastic Cell Line (MBA-15) on the Sensor Chip JF - Electroanalysis : an international journal devoted to fundamental and practical aspects of electroanalysis N2 - An electrochemical assay for the indication of the activity of the cell bound differentiation marker alkaline phosphatase (ALP) is proposed using voltammetry on an in-vitro cell culture. The basis of the assay is cultivation of cells on gold microelectrodes in wells of a microplate, catalytic hydrolysis of p-aminophenyl phosphate by ALP and indication of p-aminophenol oxidation by square wave voltammetry (SWV) with the sensors onto which the cells attached. The morphology of the bone marrow stromal cell line (MBA-15) on the electrode surface was investigated and it exhibited in vitro osteogenic characteristics. Since ALP is expressed on the cell surface in early differentiation stage of osteoblastic cells, its activity was followed after different culture times over a period of 144 h by recording repetitive voltammograms at different time points upon addition of the substrate p-aminophenyl phosphate. The ALP activity was estimated from the signal increase related to formation rate of p-aminophenol and the number of cells. The highest value was measured at 120 h, when the cells reached confluence. The results of the electrochemical activity assay are consistent with the colorimetric acquired value from p-nitrophenol formation rate. KW - Alkaline phosphatase KW - Osteoblast KW - Voltammetry KW - Biomarker KW - p-Aminophenol Y1 - 2015 U6 - https://doi.org/10.1002/elan.201400684 SN - 1040-0397 SN - 1521-4109 VL - 27 IS - 6 SP - 1350 EP - 1358 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Yarman, Aysu A1 - Dechtrirat, Decha A1 - Bosserdt, Maria A1 - Jetzschmann, Katharina J. A1 - Gajovic-Eichelmann, Nenad A1 - Scheller, Frieder W. T1 - Cytochrome c-derived hybrid systems based on moleculary imprinted polymers JF - Electroanalysis : an international journal devoted to fundamental and practical aspects of electroanalysis N2 - Hybrid architectures which combine a MIP with an immobilized affinity ligand or a biocatalyst sum up the advantages of both components. In this paper, hybrid architectures combining a layer of a molecularly imprinted electropolymer with a mini-enzyme or a self-assembled monolayer will be presented. (i) Microperoxidase-11 (MP-11) catalyzed oxidation of the drug aminopyrine on a product-imprinted sublayer: The peroxide dependent conversion of the analyte aminopyrine takes place in the MP-11 containing layer on top of a product-imprinted electropolymer on the indicator electrode. The hierarchical architecture resulted in the elimination of interfering signals for ascorbic acid and uric acid. An advantage of the new hierarchical structure is the separation of MIP formation by electropolymerization and immobilization of the catalyst. In this way it was for the first time possible to integrate an enzyme with a MIP layer in a sensor configuration. This combination has the potential to be transferred to other enzymes, e.g. P450, opening the way to clinically important analytes. (ii) Epitope-imprinted poly-scopoletin layer for binding of the C-terminal peptide and cytochrome c (Cyt c): The MIP binds both the target peptide and the parent protein almost eight times stronger than the non-imprinted polymer with affinities in the lower micromolar range. Exchange of only one amino acid in the peptide decreases the binding by a factor of five. (iii) MUA-poly-scopoletin MIP for cytochrome c: Cyt c bound to the MIP covered gold electrode exhibits direct electron transfer with a redox potential and rate constant typical for the native protein. The MIP cover layer suppresses the displacement of the target protein by BSA or myoglobin. The combination of protein imprinted polymers with an efficient electron transfer is a new concept for characterizing electroactive proteins such as Cyt c. The competition with other proteins shows that the MIP binds its target Cyt c preferentially and that molecular shape and the charge of protein determine the binding of interfering proteins. KW - Molecularly imprinted polymers KW - Microperoxidase-11 KW - Cytochrome c KW - Catalytically active MIPs KW - Epitope imprinting KW - Monoclonal MIPs Y1 - 2015 U6 - https://doi.org/10.1002/elan.201400592 SN - 1040-0397 SN - 1521-4109 VL - 27 IS - 3 SP - 573 EP - 586 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Yang, Wei A1 - Dupont-Nivet, Guillaume A1 - Jolivet, Marc A1 - Guo, Zhaojie A1 - Bougeois, Laurie A1 - Bosboom, Roderic A1 - Zhang, Ziya A1 - Zhu, Bei A1 - Heilbronn, Gloria T1 - Magnetostratigraphic record of the early evolution of the southwestern Tian Shan foreland basin (Ulugqat area), interactions with Pamir indentation and India-Asia collision JF - Tectonophysics : international journal of geotectonics and the geology and physics of the interior of the earth N2 - The Tian Shan range is an inherited intracontinental structure reactivated by the far-field effects of the India-Asia collision. A growing body of thermochronology and magnetostratigraphy datasets shows that the range grew through several tectonic pulses since similar to 25 Ma, however the early Cenozoic history remains poorly constrained. The time-lag between the Eocene India-Asia collision and the Miocene onset of Tian Shan exhumation is particularly enigmatic. This peculiar period is potentially recorded along the southwestern Tian Shan piedmont. There, late Eocene marine deposits of the proto-Paratethys epicontinental sea transition to continental foreland basin sediments of unknown age were recently dated. We provide magnetostratigraphic dating of these continental sediments from the 1700-m-thick Mine section integrated with previously published detrital apatite fission track and U/Pb zircon ages. The most likely correlation to the geomagnetic polarity time scale indicates an age span from 20.8 to 13.3 Ma with a marked increase in accumulation rates at 19-18 Ma. This implies that the entire Oligocene period is missing between the last marine and first continental sediments, as suggested by previous southwestern Tian Shan results. This differs from the southwestern Tarim basin where Eocene marine deposits are continuously overlain by late Eocene-Oligocene continental sediments. This supports a simple evolution model of the western Tarim basin with Eocene-Oligocene foreland basin activation to the south related to northward thrusting of the Kunlun Shan, followed by early Miocene activation of northern foreland basin related to overthrusting of the south Tian Shan. Our data also support southward propagation of the Tian Shan piedmont from 20 to 18 Ma that may relate to motion on the Talas Fergana Fault. The coeval activation of a major right-lateral strike-slip system allowing indentation of the Pamir Salient into the Tarim basin, suggests far-field deformation from the India-Asia collision zone affected the Tian Shan and the Talas Fergana fault by early Miocene. (C) 2015 Elsevier B.V. All rights reserved. KW - Magnetostratigraphy KW - Cenozoic KW - Tian Shan KW - Pamir KW - Tarim Basin KW - Tectonics Y1 - 2015 U6 - https://doi.org/10.1016/j.tecto.2015.01.003 SN - 0040-1951 SN - 1879-3266 VL - 644 SP - 122 EP - 137 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Yan, Wan A1 - Fang, Liang A1 - Nöchel, Ulrich A1 - Kratz, Karl A1 - Lendlein, Andreas T1 - Influence of deformation temperature on structural variation and shape-memory effect of a thermoplastic semi-crystalline multiblock copolymer JF - eXPRESS polymer letters N2 - A multiblock copolymer termed as PCL-PIBMD, consisting of crystallizable poly(epsilon-caprolactone) (PCL) segments and crystallizable poly(3S-isobutyl-morpholine-2,5-dione) (PIBMD) segments, has been reported as a material showing a thermally-induced shape-memory effect. While PIBMD crystalline domains act as netpoints to determine the permanent shape, both PCL crystalline domains and PIBMD amorphous domains, which have similar transition temperatures (T-trans) can act as switching domains. In this work, the influence of the deformation temperature (T-deform = 50 or 20 degrees C), which was above or below T-trans, on the structural changes of PCL-PIBMD during uniaxial deformation and the shapememory properties were investigated. Furthermore, the relative contribution of crystalline PCL and PIBMD amorphous phases to the fixation of the temporary shape were distinguished by a toluene vapor treatment approach. The results indicated that at 50 degrees C, both PCL and PIBMD amorphous phases can be orientated during deformation, resulting in thermally-induced crystals of PCL domains and joint contribution to the switching domains. In contrast at 20 degrees C, the temporary shape was mainly fixed by PCL crystals generated via strain-induced crystallization. KW - biodegradable polymers KW - shape-memory polymer KW - multiblock copolymer KW - polydepsipeptide Y1 - 2015 U6 - https://doi.org/10.3144/expresspolymlett.2015.58 SN - 1788-618X VL - 9 IS - 7 SP - 624 EP - 635 PB - Budapest University of Technology and Economics, Department of Polymer Engineering CY - Budapest ER - TY - JOUR A1 - Yan, Ming A1 - Zhou, Wei A1 - Shu, Hua A1 - Kliegl, Reinhold T1 - Perceptual span depends on font size during the reading of chinese sentences JF - Journal of experimental psychology : Learning, memory, and cognition N2 - The present study explored the perceptual span (i.e., the physical extent of an area from which useful visual information is extracted during a single fixation) during the reading of Chinese sentences in 2 experiments. In Experiment 1, we tested whether the rightward span can go beyond 3 characters when visually similar masks were used. Results showed that Chinese readers needed at least 4 characters to the right of fixation to maintain a normal reading behavior when visually similar masks were used and when characters were displayed in small fonts, indicating that the span is dynamically influenced by masking materials. In Experiments 2 and 3, we asked whether the perceptual span varies as a function of font size in spaced (German) and unspaced (Chinese) scripts. Results clearly suggest perceptual span depends on font size in Chinese, but we failed to find such evidence for German. We propose that the perceptual span in Chinese is flexible; it is strongly constrained by its language-specific properties such as high information density and lack of word spacing. Implications for saccade-target selection during the reading of Chinese sentences are discussed. KW - eye movements KW - parafoveal processing KW - perceptual span KW - Chinese reading Y1 - 2015 U6 - https://doi.org/10.1037/a0038097 SN - 0278-7393 SN - 1939-1285 VL - 41 IS - 1 SP - 209 EP - 219 PB - American Psychological Association CY - Washington ER - TY - JOUR A1 - Yan, Ming A1 - Sommer, Werner T1 - Parafoveal-on-Foveal Effects of Emotional Word Semantics in Reading Chinese Sentences: Evidence From Eye Movements JF - Journal of experimental psychology : Learning, memory, and cognition N2 - Despite the well-known influence of emotional meaning on cognition, relatively less is known about its effects on reading behavior. We investigated whether fixation behavior during the reading of Chinese sentences is influenced by emotional word meaning in the parafovea. Two-character target words embedded into the same sentence frames provided emotionally positive, negative, or neutral contents. Fixation durations on neutral pretarget words were prolonged for positive parafoveal words and for highly frequent negative parafoveal words. In addition, fixation durations on foveal emotional words were shorter than those on neutral words. We also found that the role of emotional words varied as a function of their valence during foveal and parafoveal processing. These findings suggest a processing advantage for emotional words relative to emotionally neutral stimuli in foveal and parafoveal vision. We discuss implications for the notion of attention attraction due to emotional content. KW - parafoveal vision KW - emotion KW - reading KW - Chinese Y1 - 2015 U6 - https://doi.org/10.1037/xlm0000095 SN - 0278-7393 SN - 1939-1285 VL - 41 IS - 4 SP - 1237 EP - 1243 PB - American Psychological Association CY - Washington ER - TY - JOUR A1 - Yan, Ming A1 - Pan, Jinger A1 - Belanger, Nathalie N. A1 - Shu, Hua T1 - Chinese deaf readers have early access to parafoveal semantics JF - Journal of experimental psychology : Learning, memory, and cognition N2 - In the present study, we manipulated different types of information available in the parafovea during the reading of Chinese sentences and examined how deaf readers make use of the parafoveal information. Results clearly indicate that although the reading-level matched hearing readers make greater use of orthographic information in the parafovea, parafoveal semantic information is obtained earlier among the deaf readers. In addition, a phonological preview benefit effect was found for the better deaf readers (relative to less-skilled deaf readers), although we also provide an alternative explanation for this effect. Providing evidence that Chinese deaf readers have higher efficiency when processing parafoveal semantics, the study indicates flexibility across individuals in the mechanisms underlying word recognition adapting to the inputs available in the linguistic environment. KW - parafoveal KW - sentence reading KW - Chinese KW - deaf readers Y1 - 2015 U6 - https://doi.org/10.1037/xlm0000035 SN - 0278-7393 SN - 1939-1285 VL - 41 IS - 1 SP - 254 EP - 261 PB - American Psychological Association CY - Washington ER - TY - JOUR A1 - Yan, Ming T1 - Visually complex foveal words increase the amount of parafoveal information acquired JF - Vision research : an international journal for functional aspects of vision. N2 - This study investigates the effect of foveal load (i.e., processing difficulty of currently fixated words) on parafoveal information processing. Contrary to the commonly accepted view that high foveal load leads to reduced parafoveal processing efficiency, results of the present study showed that increasing foveal visual (but not linguistic) processing load actually increased the amount of parafoveal information acquired, presumably due to the fact that longer fixation duration on the pretarget word provided more time for parafoveal processing of the target word. It is therefore proposed in the present study that foveal linguistic processing load is not the only factor that determines parafoveal processing; preview time (afforded by foveal word visual processing load) may jointly influence parafoveal processing. (C) 2015 Elsevier Ltd. All rights reserved. KW - Reading KW - Eye movements KW - Parafoveal processing KW - Chinese Y1 - 2015 U6 - https://doi.org/10.1016/j.visres.2015.03.025 SN - 0042-6989 SN - 1878-5646 VL - 111 SP - 91 EP - 96 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Yadavalli, Nataraja Sekhar A1 - König, Tobias A1 - Santer, Svetlana T1 - Selective mass transport of azobenzene-containing photosensitive films towards or away from the light intensity JF - Journal of the Society for Information Display N2 - Here, we report on two photosensitive amorphous polymers showing opposite behavior upon exposure to illumination. The first polymer (PAZO) consists of linear backbone to which azobenzene-containing side chains are covalently attached, while in the second polymer (azo-PEI), the azobenzene side chains are attached ionically to a polyelectrolyte backbone. When irradiated through a mask, the PAZO goes away from the intensity maxima, leaving behind topography trenches, while the direction of the mass transport of the azo-PEI polymer points towards the intensity maxima. This kind of behavior has been reported only for certain liquid crystalline polymers that exhibit in-phase reaction on illumination, that is, topography maxima coincides with the intensity maxima. Furthermore, flat nanocrystals placed on top of azo-PEI film was found to be moved together with the mass transport of the underlying polymer film as visualized using in situ atomic force microscopy (AFM) measurements. It was also demonstrated that the two polymer films respond differently on irradiation with the polarization and intensity interference patterns (IPs). To record the kinetic of the surface relief grating formation within two polymers during irradiation with different IPs, we utilized a homemade setup combining the optical part for the generation of IP and AFM. A possible mechanism explaining different responses on the irradiation of amorphous polymers is discussed in the frame of a theoretical model proposed by Saphiannikova et al. (J. Phys. Chem. B 113, 5032-5045 (2009)). KW - azobenzene KW - surface relief grating KW - light-induced mass transport KW - interference pattern KW - nano-object motion Y1 - 2015 U6 - https://doi.org/10.1002/jsid.306 SN - 1071-0922 SN - 1938-3657 VL - 23 IS - 4 SP - 154 EP - 162 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Xu, Jingsan A1 - Shalom, Menny A1 - Piersimoni, Fortunato A1 - Antonietti, Markus A1 - Neher, Dieter A1 - Brenner, Thomas J. K. T1 - Color-Tunable Photoluminescence and NIR Electroluminescence in Carbon Nitride Thin Films and Light-Emitting Diodes JF - Advanced optical materials Y1 - 2015 U6 - https://doi.org/10.1002/adom.201500019 SN - 2195-1071 VL - 3 IS - 7 SP - 913 EP - 917 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Xu, Jingsan A1 - Cao, Shaowen A1 - Brenner, Thomas J. K. A1 - Yang, Xiaofei A1 - Yu, Jiaguo A1 - Antonietti, Markus A1 - Shalom, Menny T1 - Supramolecular Chemistry in Molten Sulfur: Preorganization Effects Leading to Marked Enhancement of Carbon Nitride Photoelectrochemistry JF - Advanced functional materials N2 - Here, a new method for enhancing the photoelectrochemical properties of carbon nitride thin films by in situ supramolecular-driven preorganization of phenyl-contained monomers in molten sulfur is reported. A detailed analysis of the chemical and photophysical properties suggests that the molten sulfur can texture the growth and induce more effective integration of phenyl groups into the carbon nitride electrodes, resulting in extended light absorption alongside with improved conductivity and better charge transfer. Furthermore, photophysical measurements indicate the formation of sub-bands in the optical bandgap which is beneficial for exciton splitting. Moreover, the new bands can mediate hole transfer to the electrolyte, thus improving the photooxidation activity. The utilization of high temperature solvent as the polymerization medium opens new opportunities for the significant improvement of carbon nitride films toward an efficient photoactive material for various applications. KW - carbon nitride thin film KW - charge transfer KW - molten sulfur KW - photoelectrochemistry Y1 - 2015 U6 - https://doi.org/10.1002/adfm.201502843 SN - 1616-301X SN - 1616-3028 VL - 25 IS - 39 SP - 6265 EP - 6271 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Xin, Hong A1 - LaRue, Jerry A1 - Oberg, Henrik A1 - Beye, Martin A1 - Turner, J. J. A1 - Gladh, Jörgen A1 - Ng, May L. A1 - Sellberg, Jonas A. A1 - Kaya, Sarp A1 - Mercurio, G. A1 - Hieke, F. A1 - Nordlund, Dennis A1 - Schlotter, William F. A1 - Dakovski, Georgi L. A1 - Minitti, Michael P. A1 - Föhlisch, Alexander A1 - Wolf, Martin A1 - Wurth, Wilfried A1 - Ogasawara, Hirohito A1 - Norskov, Jens K. A1 - Ostrom, Henrik A1 - Pettersson, Lars G. M. A1 - Nilsson, Anders A1 - Abild-Pedersen, Frank T1 - Strong Influence of Coadsorbate Interaction on CO Desorption Dynamics on Ru(0001) Probed by Ultrafast X-Ray Spectroscopy and Ab Initio Simulations JF - Physical review letters N2 - We show that coadsorbed oxygen atoms have a dramatic influence on the CO desorption dynamics from Ru(0001). In contrast to the precursor-mediated desorption mechanism on Ru(0001), the presence of surface oxygen modifies the electronic structure of Ru atoms such that CO desorption occurs predominantly via the direct pathway. This phenomenon is directly observed in an ultrafast pump-probe experiment using a soft x-ray free-electron laser to monitor the dynamic evolution of the valence electronic structure of the surface species. This is supported with the potential of mean force along the CO desorption path obtained from density-functional theory calculations. Charge density distribution and frozen-orbital analysis suggest that the oxygen-induced reduction of the Pauli repulsion, and consequent increase of the dative interaction between the CO 5 sigma and the charged Ru atom, is the electronic origin of the distinct desorption dynamics. Ab initio molecular dynamics simulations of CO desorption from Ru(0001) and oxygen-coadsorbed Ru(0001) provide further insights into the surface bond-breaking process. Y1 - 2015 U6 - https://doi.org/10.1103/PhysRevLett.114.156101 SN - 0031-9007 SN - 1079-7114 VL - 114 IS - 15 PB - American Physical Society CY - College Park ER -