TY - THES A1 - Donner, Reik Volker T1 - Advanced methods for analysing and modelling multivariate palaeoclimatic time series T1 - Moderne Verfahren zur Analyse und Modellierung multivariater paläoklimatischer Zeitreihen N2 - The separation of natural and anthropogenically caused climatic changes is an important task of contemporary climate research. For this purpose, a detailed knowledge of the natural variability of the climate during warm stages is a necessary prerequisite. Beside model simulations and historical documents, this knowledge is mostly derived from analyses of so-called climatic proxy data like tree rings or sediment as well as ice cores. In order to be able to appropriately interpret such sources of palaeoclimatic information, suitable approaches of statistical modelling as well as methods of time series analysis are necessary, which are applicable to short, noisy, and non-stationary uni- and multivariate data sets. Correlations between different climatic proxy data within one or more climatological archives contain significant information about the climatic change on longer time scales. Based on an appropriate statistical decomposition of such multivariate time series, one may estimate dimensions in terms of the number of significant, linear independent components of the considered data set. In the presented work, a corresponding approach is introduced, critically discussed, and extended with respect to the analysis of palaeoclimatic time series. Temporal variations of the resulting measures allow to derive information about climatic changes. For an example of trace element abundances and grain-size distributions obtained near the Cape Roberts (Eastern Antarctica), it is shown that the variability of the dimensions of the investigated data sets clearly correlates with the Oligocene/Miocene transition about 24 million years before present as well as regional deglaciation events. Grain-size distributions in sediments give information about the predominance of different transportation as well as deposition mechanisms. Finite mixture models may be used to approximate the corresponding distribution functions appropriately. In order to give a complete description of the statistical uncertainty of the parameter estimates in such models, the concept of asymptotic uncertainty distributions is introduced. The relationship with the mutual component overlap as well as with the information missing due to grouping and truncation of the measured data is discussed for a particular geological example. An analysis of a sequence of grain-size distributions obtained in Lake Baikal reveals that there are certain problems accompanying the application of finite mixture models, which cause an extended climatological interpretation of the results to fail. As an appropriate alternative, a linear principal component analysis is used to decompose the data set into suitable fractions whose temporal variability correlates well with the variations of the average solar insolation on millenial to multi-millenial time scales. The abundance of coarse-grained material is obviously related to the annual snow cover, whereas a significant fraction of fine-grained sediments is likely transported from the Taklamakan desert via dust storms in the spring season. N2 - Die Separation natürlicher und anthropogen verursachter Klimaänderungen ist eine bedeutende Aufgabe der heutigen Klimaforschung. Hierzu ist eine detaillierte Kenntnis der natürlichen Klimavariabilität während Warmzeiten unerlässlich. Neben Modellsimulationen und historischen Aufzeichnungen spielt hierfür die Analyse von sogenannten Klima-Stellvertreterdaten eine besondere Rolle, die anhand von Archiven wie Baumringen oder Sediment- und Eisbohrkernen erhoben werden. Um solche Quellen paläoklimatischer Informationen vernünftig interpretieren zu können, werden geeignete statistische Modellierungsansätze sowie Methoden der Zeitreihenanalyse benötigt, die insbesondere auf kurze, verrauschte und instationäre uni- und multivariate Datensätze anwendbar sind. Korrelationen zwischen verschiedenen Stellvertreterdaten eines oder mehrerer klimatologischer Archive enthalten wesentliche Informationen über den Klimawandel auf großen Zeitskalen. Auf der Basis einer geeigneten Zerlegung solcher multivariater Zeitreihen lassen sich Dimensionen schätzen als die Zahl der signifikanten, linear unabhängigen Komponenten des Datensatzes. Ein entsprechender Ansatz wird in der vorliegenden Arbeit vorgestellt, kritisch diskutiert und im Hinblick auf die Analyse von paläoklimatischen Zeitreihen weiterentwickelt. Zeitliche Variationen der entsprechenden Maße erlauben Rückschlüsse auf klimatische Veränderungen. Am Beispiel von Elementhäufigkeiten und Korngrößenverteilungen des Cape-Roberts-Gebietes in der Ostantarktis wird gezeigt, dass die Variabilität der Dimension der untersuchten Datensätze klar mit dem Übergang vom Oligozän zum Miozän vor etwa 24 Millionen Jahren sowie regionalen Abschmelzereignissen korreliert. Korngrößenverteilungen in Sedimenten erlauben Rückschlüsse auf die Dominanz verschiedenen Transport- und Ablagerungsmechanismen. Mit Hilfe von Finite-Mixture-Modellen lassen sich gemessene Verteilungsfunktionen geeignet approximieren. Um die statistische Unsicherheit der Parameterschätzung in solchen Modellen umfassend zu beschreiben, wird das Konzept der asymptotischen Unsicherheitsverteilungen eingeführt. Der Zusammenhang mit dem Überlapp der einzelnen Komponenten und aufgrund des Abschneidens und Binnens der gemessenen Daten verloren gehenden Informationen wird anhand eines geologischen Beispiels diskutiert. Die Analyse einer Sequenz von Korngrößenverteilungen aus dem Baikalsee zeigt, dass bei der Anwendung von Finite-Mixture-Modellen bestimmte Probleme auftreten, die eine umfassende klimatische Interpretation der Ergebnisse verhindern. Stattdessen wird eine lineare Hauptkomponentenanalyse verwendet, um den Datensatz in geeignete Fraktionen zu zerlegen, deren zeitliche Variabilität stark mit den Schwankungen der mittleren Sonneneinstrahlung auf der Zeitskala von Jahrtausenden bis Jahrzehntausenden korreliert. Die Häufigkeit von grobkörnigem Material hängt offenbar mit der jährlichen Schneebedeckung zusammen, während feinkörniges Material möglicherweise zu einem bestimmten Anteil durch Frühjahrsstürme aus der Taklamakan-Wüste herantransportiert wird. KW - Zeitreihenanalyse KW - Paläoklimatologie KW - Multivariate Statistik KW - Korngrößenverteilungen KW - Time Series Analysis KW - Palaeoclimatology KW - Multivariate Statistics KW - Grain-size distributions Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-12560 ER - TY - THES A1 - Feulner, Philine T1 - Adaptive radiation, speciation, and reproductive isolation in African weakly electric fish : (Genus Campylomormyrus, Mormyridae, Teleostei) T1 - Adaptive Radiation, Artbildung und reproduktive Isolation bei schwach elektrischen Fischen Afrikas : (Genus Campylomormyrus, Mormyridae, Teleostei) N2 - The ultimate aim of this study is to better understand the relevance of weak electricity in the adaptive radiation of the African mormyrid fish. The chosen model taxon, the genus Campylomormyrus, exhibits a wide diversity of electric organ discharge (EOD) waveform types. Their EOD is age, sex, and species specific and is an important character for discriminating among species that are otherwise cryptic. After having established a complementary set of molecular markers, I examined the radiation of Campylomormyrus by a combined approach of molecular data (sequence data from the mitochondrial cytochrome b and the nuclear S7 ribosomal protein gene, as well as 18 microsatellite loci, especially developed for the genus Campylomormyrus), observation of ontogeny and diversification of EOD waveform, and morphometric analysis of relevant morphological traits. I built up the first convincing phylogenetic hypothesis for the genus Campylomormyrus. Taking advantage of microsatellite data, the identified phylogenetic clades proved to be reproductively isolated biological species. This way I detected at least six species occurring in sympatry near Brazzaville/Kinshasa (Congo Basin). By combining molecular data and EOD analyses, I could show that there are three cryptic species, characterised by their own adult EOD types, hidden under a common juvenile EOD form. In addition, I confirmed that adult male EOD is species-specific and is more different among closely related species than among more distantly related ones. This result and the observation that the EOD changes with maturity suggest its function as a reproductive isolation mechanism. As a result of my morphometric shape analysis, I could assign species types to the identified reproductively isolated groups to produce a sound taxonomy of the group. Besides this, I could also identify morphological traits relevant for the divergences between the identified species. Among them, the variations I found in the shape of the trunk-like snout, suggest the presence of different trophic specializations; therefore, this trait might have been involved in the ecological radiation of the group. In conclusion, I provided a convincing scenario envisioning an adaptive radiation of weakly electric fish triggered by sexual selection via assortative mating due to differences in EOD characteristics, but caused by a divergent selection of morphological traits correlated with the feeding ecology. N2 - Das übergreifende Ziel dieser Arbeit ist das bessere Verständnis der Bedeutung der schwachen Elektrizität für die adaptive Radiation der Mormyriden Afrikas. Das gewählte Modell-Taxon, die Mormyriden-Gattung Campylomormyrus, zeigt eine große Vielfalt an elektrischen Entladungsformen. Diese Entladungsformen sind alters-, geschlechts-, sowie artspezifisch und ein wichtiges Unterscheidungskriterium von ansonsten kryptischen Arten. Ich untersuchte die Radiation der Gattung Campylomormyrus anhand eines kombinierten Ansatzes aus molekularen Daten (Sequenzdaten des mitochondrialen Cytochrom b Gens und des nukleären S7 ribosomalen Protein-Gens, sowie 18 Mikrosatelliten, speziell von mir entwickelt für die Gattung Campylomormyrus), Beobachtungen der Ontogenie und der Diversifikation der Entladungsform, sowie morphometrische Auswertungen der Gestalt relevanter morphologischer Merkmale. Ich erstellte eine erste phylogenetische Hypothese für die Gattung Campylomormyrus. Durch meine Mikrosatellitendaten, die als unabhängiger Beweis dienten, konnte ich zeigen, dass die identifizierten phylogenetischen Gruppen reproduktiv isolierte biologische Arten sind. Auf diese Weise konnte ich mindesten sechs Arten nachweisen, die in Sympatrie nahe Brazzaville/Kinshasa (Kongo-Becken) vorkommen. Durch die Übereinstimmung von molekularen Daten und Entladungsformen konnte ich drei kryptische Arten unterscheiden, die sich hinter einheitlichen juvenilen Entladungsformen verbergen, sich aber zu verschiedenen adulten Formen entwickelten. Des Weiteren konnte ich zeigen, dass die adulten männlichen Entladungsformen artspezifisch sind und, dass der Unterschied in der Entladungsform zwischen nah verwandten Arten deutlicher ausgeprägt ist als zwischen entfernter verwandten Arten. Dieses Ergebnis und die Beobachtung, dass sich die Entladungsform bei der Geschlechtsreife ändert, weisen darauf hin, dass die Entladungsform als reproduktiver Isolationsmechanismus dient. In einer morphometrischen Gestalt-Analyse verglich ich das Typen-Material der beschriebenen Arten mit den zuvor ermittelten reproduktiv isolierten Gruppen, um auf diese Weise deren Art zu bestimmen. Überdies konnte ich maßgebliche morphologische Unterscheidungsmerkmale identifizieren. Diese äußern sich hauptsächlich in der Gestalt der rüsselartigen Schnauze, könnten daher mit einer trophischen Spezialisierung einhergehen und eine ökologische Artbildung ermöglichen. Zusammenfassend entwickelte ich, in Übereinstimmung mit anderen Untersuchungen und theoretischen Überlegungen, eine plausible Hypothese einer adaptiven Radiation der schwach-elektrischen Fische Afrikas, ausgelöst durch sexuelle Selektion. Diese wirkt durch assortative Verpaarung, basierend auf Charakteristika der elektrischen Entladungsform. Verursacht wird der Prozess der adaptiven Radiation jedoch durch divergierende Selektion morphologischer Merkmale, die in Bezug zur Nahrungsökologie stehen. KW - Phylogenie KW - Ontogenie KW - Morphologie KW - Elektrische Fische KW - Nilhechte KW - Elektrische Entladung KW - Campylomormyrus KW - Mikrosatelliten KW - Campylomormyrus KW - Microsatellite Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-9560 ER - TY - THES A1 - Hetzer, Dirk T1 - Adaptive Quality of Service based Bandwidth Planning in Internet Y1 - 2006 CY - Potsdam ER - TY - JOUR A1 - Wronski, Torsten A1 - Apio, Ann A1 - Plath, Martin T1 - Activity patterns of bushbuck (Tragelaphus scriptus) in Queen Elizabeth National Park JF - Behavioural processes N2 - Activity patterns and time budgets of bushbuck (Tragelaphus scriptus) were studied in a free-ranging population in Queen Elizabeth National Park, Uganda from August 2000 to January 2002. We investigated differences in activity patterns in relation to daytime, season, sun radiation, moonlight, age and sex. Bushbuck were found to show peak activities around sunrise and at dawn. No difference in the mean activity rates was found between the dry and wet season. Daytime activity was not predicted by differences in sun radiation, nor was nighttime activity predicted by the presence or absence of moonlight. We found the activity of adult territorial males to be strongly positively correlated with that of females, whereas the activity of young-adult non-territorial males was not significantly correlated with the activity of females. This suggests that young-adult males shift their peak activity to phases when adult territorial males are less active. KW - activity patterns KW - bushbuck KW - tragelaphini KW - ungulate behaviour KW - Uganda Y1 - 2006 U6 - https://doi.org/10.1016/j.beproc.2006.08.003 SN - 0376-6357 VL - 73 IS - 3 SP - 333 EP - 341 PB - Elsevier CY - Amsterdam ER - TY - BOOK ED - Jürgensen, Helmut T1 - Accessible Media : Pre-Proceedings of a Workshop Potsdam 8-9 May, 2006 T3 - Preprint / Universität Potsdam, Institut für Informatik Y1 - 2006 SN - 0946-7580 VL - 2006, 7 PB - Univ. CY - Potsdam ER - TY - THES A1 - Hu, Ji T1 - A virtual machine architecture for IT-security laboratories T1 - Eine virtuelle maschinenbasierte Architektur für IT-Sicherheitslabore N2 - This thesis discusses challenges in IT security education, points out a gap between e-learning and practical education, and presents a work to fill the gap. E-learning is a flexible and personalized alternative to traditional education. Nonetheless, existing e-learning systems for IT security education have difficulties in delivering hands-on experience because of the lack of proximity. Laboratory environments and practical exercises are indispensable instruction tools to IT security education, but security education in conventional computer laboratories poses particular problems such as immobility as well as high creation and maintenance costs. Hence, there is a need to effectively transform security laboratories and practical exercises into e-learning forms. In this thesis, we introduce the Tele-Lab IT-Security architecture that allows students not only to learn IT security principles, but also to gain hands-on security experience by exercises in an online laboratory environment. In this architecture, virtual machines are used to provide safe user work environments instead of real computers. Thus, traditional laboratory environments can be cloned onto the Internet by software, which increases accessibility to laboratory resources and greatly reduces investment and maintenance costs. Under the Tele-Lab IT-Security framework, a set of technical solutions is also proposed to provide effective functionalities, reliability, security, and performance. The virtual machines with appropriate resource allocation, software installation, and system configurations are used to build lightweight security laboratories on a hosting computer. Reliability and availability of laboratory platforms are covered by a virtual machine management framework. This management framework provides necessary monitoring and administration services to detect and recover critical failures of virtual machines at run time. Considering the risk that virtual machines can be misused for compromising production networks, we present a security management solution to prevent the misuse of laboratory resources by security isolation at the system and network levels. This work is an attempt to bridge the gap between e-learning/tele-teaching and practical IT security education. It is not to substitute conventional teaching in laboratories but to add practical features to e-learning. This thesis demonstrates the possibility to implement hands-on security laboratories on the Internet reliably, securely, and economically. N2 - Diese Dissertation beschreibt die Herausforderungen in der IT Sicherheitsausbildung und weist auf die noch vorhandene Lücke zwischen E-Learning und praktischer Ausbildung hin. Sie erklärt einen Ansatz sowie ein System, um diese Lücke zwischen Theorie und Praxis in der elektronischen Ausbildung zu schließen. E-Learning ist eine flexible und personalisierte Alternative zu traditionellen Lernmethoden. Heutigen E-Learning Systemen mangelt es jedoch an der Fähigkeit, praktische Erfahrungen über große Distanzen zu ermöglichen. Labor- bzw. Testumgebungen sowie praktische Übungen sind jedoch unverzichtbar, wenn es um die Ausbildung von Sicherheitsfachkräften geht. Konventionelle Laborumgebungen besitzen allerdings einige Nachteile wie bspw. hoher Erstellungsaufwand, keine Mobilität, hohe Wartungskosten, etc. Die Herausforderung heutiger IT Sicherheitsausbildung ist es daher, praktische Sicherheitslaborumgebungen und Übungen effektiv mittels E-Learning zu unterstützen. In dieser Dissertation wird die Architektur von Tele-Lab IT-Security vorgestellt, die Studenten nicht nur erlaubt theoretische Sicherheitskonzepte zu erlernen, sondern darüber hinaus Sicherheitsübungen in einer Online-Laborumgebung praktisch zu absolvieren. Die Teilnehmer können auf diese Weise wichtige praktische Erfahrungen im Umgang mit Sicherheitsprogrammen sammeln. Zur Realisierung einer sicheren Übungsumgebung, werden virtuelle Maschinen anstatt reale Rechner im Tele-Lab System verwendet. Mittels virtueller Maschinen können leicht Laborumgebungen geklont, verwaltet und über das Internet zugänglich gemacht werden. Im Vergleich zu herkömmlichen Offline-Laboren können somit erhebliche Investitions- und Wartungskosten gespart werden. Das Tele-Lab System bietet eine Reihe von technischen Funktionen, die den effektiven, zuverlässigen und sicheren Betrieb dieses Trainingssystems gewährleistet. Unter Beachtung angemessener Ressourcennutzung, Softwareinstallationen und Systemkonfigurationen wurden virtuelle Maschinen als Übungsstationen erstellt, die auf einem einzelnen Rechner betrieben werden. Für ihre Zuverlässigkeit und Verfügbarkeit ist das Managementsystem der virtuellen Maschinen verantwortlich. Diese Komponente besitzt die notwendigen Überwachungs- und Verwaltungsfunktionen, um kritische Fehler der virtuellen Maschinen während der Laufzeit zu erkennen und zu beheben. Damit die Übungsstationen nicht bspw. zur Kompromittierung von Produktivnetzwerken genutzt werden, beschreibt die Dissertation Sicherheits-Managementlösungen, die mittels Isolation auf System und Netzwerk Ebene genau dieses Risiko verhindern sollen. Diese Arbeit ist der Versuch, die Lücke zwischen E-Learning/Tele-Teaching und praktischer Sicherheitsausbildung zu schließen. Sie verfolgt nicht das Ziel, konventionelle Ausbildung in Offline Laboren zu ersetzen, sondern auch praktische Erfahrungen via E-Learning zu unterstützen. Die Dissertation zeigt die Möglichkeit, praktische Erfahrungen mittels Sicherheitsübungsumgebungen über das Internet auf zuverlässige, sichere und wirtschaftliche Weise zu vermitteln. KW - Computersicherheit KW - VM KW - E-Learning KW - IT security KW - virtual machine KW - E-Learning Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-7818 ER - TY - BOOK A1 - Hu, Ji A1 - Cordel, Dirk A1 - Meinel, Christoph T1 - A virtual machine architecture for creating IT-security laboratories N2 - E-learning is a flexible and personalized alternative to traditional education. Nonetheless, existing e-learning systems for IT security education have difficulties in delivering hands-on experience because of the lack of proximity. Laboratory environments and practical exercises are indispensable instruction tools to IT security education, but security education in con-ventional computer laboratories poses the problem of immobility as well as high creation and maintenance costs. Hence, there is a need to effectively transform security laboratories and practical exercises into e-learning forms. This report introduces the Tele-Lab IT-Security architecture that allows students not only to learn IT security principles, but also to gain hands-on security experience by exercises in an online laboratory environment. In this architecture, virtual machines are used to provide safe user work environments instead of real computers. Thus, traditional laboratory environments can be cloned onto the Internet by software, which increases accessibilities to laboratory resources and greatly reduces investment and maintenance costs. Under the Tele-Lab IT-Security framework, a set of technical solutions is also proposed to provide effective functionalities, reliability, security, and performance. The virtual machines with appropriate resource allocation, software installation, and system configurations are used to build lightweight security laboratories on a hosting computer. Reliability and availability of laboratory platforms are covered by the virtual machine management framework. This management framework provides necessary monitoring and administration services to detect and recover critical failures of virtual machines at run time. Considering the risk that virtual machines can be misused for compromising production networks, we present security management solutions to prevent misuse of laboratory resources by security isolation at the system and network levels. This work is an attempt to bridge the gap between e-learning/tele-teaching and practical IT security education. It is not to substitute conventional teaching in laboratories but to add practical features to e-learning. This report demonstrates the possibility to implement hands-on security laboratories on the Internet reliably, securely, and economically. T3 - Technische Berichte des Hasso-Plattner-Instituts für Digital Engineering an der Universität Potsdam - 13 Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-33077 SN - 978-3-939469-13-1 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Hlinak, Andreas A1 - Mühle, Ralf-Udo A1 - Werner, Ortrud A1 - Globig, Anja A1 - Starick, Elke A1 - Schirrmeier, Horst A1 - Hoffmann, Bernd A1 - Engelhardt, Andreas A1 - Hübner, Dagmar A1 - Conraths, Franz J. A1 - Wallschläger, Hans-Dieter A1 - Kruckenberg, Helmut A1 - Müller, Thomas T1 - A virological survey in migrating waders and other waterfowl in one of the most important resting sites of Germany N2 - Wild birds are considered a potential reservoir or a carrier of viral diseases and may therefore play a role in the epidemiology of economically important or zoonotic diseases. In 2001 and 2002, a survey with special emphasis oil virus isolation in migrating waders and some other birds were conducted. In one of the most important inland resting sites for migratory waterfowl, tracheal and cloacal swabs were collected from 465 waders representing 19 different species, and 165 other birds that were not captured on purpose. A total of 42 avian viruses were isolated, 34 of these were identified as paramyxoviruses (PMVs). The majority of isolates came from waders and wild ducks, and were characterized as PMV-1. In contrast, PMV-4 was found in wild ducks only, PMV-6 was mainly detected in wader species. Four avian influenza viruses (ATVs), belonging to H4 and H3 haemagglutinin subtype, were isolated from wild duck species. Furthermore, four reo-like viruses were isolated from one particular wader species for the first time. The majority of virus positive birds were < 1 year old and did not show any clinical symptoms. There was no evidence for the presence of West Nile virus in these birds. These results confirm that the restricted resting sites in Western Europe must be considered as important locations for the intra- and interspecies transmission of avian viruses Y1 - 2006 SN - 0931-1793 ER - TY - JOUR A1 - Fettke, Jörg A1 - Chia, Tansy A1 - Eckermann, Nora A1 - Smith, Alison M. A1 - Steup, Martin T1 - A transglucosidase necessary for starch degradation and maltose metabolism in leaves at night acts on cytosolic heteroglycans (SHG) N2 - The recently characterized cytosolic transglucosidase DPE2 (EC 2.4.1.25) is essential for the cytosolic metabolism of maltose, an intermediate on the pathway by which starch is converted to sucrose at night. In in vitro assays, the enzyme utilizes glycogen as a glucosyl acceptor but the in vivo acceptor molecules remained unknown. In this communication we present evidence that DPE2 acts on the recently identified cytosolic water-soluble heteroglycans (SHG) as does the cytosolic phosphorylase (EC 2.4.1.1) isoform. By using in vitro two-step C-14 labeling assays we demonstrate that the two transferases can utilize the same acceptor sites of the SHG. Cytosolic heteroglycans from a DPE2-deficient Arabidopsis mutant were characterized. Compared with the wild type the glucose content of the heteroglycans was increased. Most of the additional glucosyl residues were found in the outer chains of SHG that are released by an endo- alpha-arabinanase (EC 3.2.1.99). Additional starch-related mutants were characterized for further analysis of the increased glucosyl content. Based on these data, the cytosolic metabolism of starch-derived carbohydrates is discussed Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0960-7412 U6 - https://doi.org/10.1111/j.1365-313X.2006.02732.x SN - 0960-7412 ER - TY - JOUR A1 - Staniforth, Andrew A1 - Wood, Nigel A1 - Reich, Sebastian T1 - A time-staggered semi-Lagrangian discretization of the rotating shallow-water equations JF - Quarterly journal of the Royal Meteorological Society N2 - A time-staggered semi-Lagrangian discretization of the rotating shallow-water equations is proposed and analysed. Application of regularization to the geopotential field used in the momentum equations leads to an unconditionally stable scheme. The analysis, together with a fully nonlinear example application, suggests that this approach is a promising, efficient, and accurate alternative to traditional schemes. KW - regularization KW - temporal discretization Y1 - 2006 U6 - https://doi.org/10.1256/qj.06.30 SN - 0035-9009 VL - 132 IS - 621C SP - 3107 EP - 3116 PB - Wiley CY - Weinheim ER - TY - THES A1 - Sokolova, Elena T1 - A Study of large-scale Atmospheric Dynamics on the Basic of NCEP Data and AOGCM Simulations Y1 - 2006 CY - Potsdam ER - TY - JOUR A1 - Grimm, Volker A1 - Berger, Uta A1 - Bastiansen, Finn A1 - Eliassen, Sigrunn A1 - Ginot, Vincent A1 - Giske, Jarl A1 - Goss-Custard, John A1 - Grand, Tamara A1 - Heinz, Simone K. A1 - Huse, Geir A1 - Huth, Andreas A1 - Jepsen, Jane U. A1 - Jorgensen, Christian A1 - Mooij, Wolf M. A1 - Mueller, Birgit A1 - Piou, Cyril A1 - Railsback, Steven Floyd A1 - Robbins, Andrew M. A1 - Robbins, Martha M. A1 - Rossmanith, Eva A1 - Rueger, Nadja A1 - Strand, Espen A1 - Souissi, Sami A1 - Stillman, Richard A. A1 - Vabo, Rune A1 - Visser, Ute A1 - DeAngelis, Donald L. T1 - A standard protocol for describing individual-based and agent-based models JF - Ecological modelling : international journal on ecological modelling and engineering and systems ecolog N2 - Simulation models that describe autonomous individual organisms (individual based models, IBM) or agents (agent-based models, ABM) have become a widely used tool, not only in ecology, but also in many other disciplines dealing with complex systems made up of autonomous entities. However, there is no standard protocol for describing such simulation models, which can make them difficult to understand and to duplicate. This paper presents a proposed standard protocol, ODD, for describing IBMs and ABMs, developed and tested by 28 modellers who cover a wide range of fields within ecology. This protocol consists of three blocks (Overview, Design concepts, and Details), which are subdivided into seven elements: Purpose, State variables and scales, Process overview and scheduling, Design concepts, Initialization, Input, and Submodels. We explain which aspects of a model should be described in each element, and we present an example to illustrate the protocol in use. In addition, 19 examples are available in an Online Appendix. We consider ODD as a first step for establishing a more detailed common format of the description of IBMs and ABMs. Once initiated, the protocol will hopefully evolve as it becomes used by a sufficiently large proportion of modellers. (c) 2006 Elsevier B.V. All rights reserved. KW - individual-based model KW - agent-based model KW - model description KW - scientific communication KW - standardization Y1 - 2006 U6 - https://doi.org/10.1016/j.ecolmodel.2006.04.023 SN - 0304-3800 VL - 198 SP - 115 EP - 126 PB - Elsevier CY - Amsterdam ER - TY - GEN A1 - Blenau, Wolfgang A1 - Hauser, Frank A1 - Cazzamali, Giuseppe A1 - Williamson, Michael A1 - Grimmelikhuijzen, Cornelis J. P. T1 - A review of neurohormone GPCRs present in the fruitfly Drosophila melanogaster and the honey bee Apis mellifera N2 - G protein-coupled receptor (GPCR) genes are large gene families in every animal, sometimes making up to 1-2% of the animal's genome. Of all insect GPCRs, the neurohormone (neuropeptide, protein hormone, biogenic amine) GPCRs are especially important, because they, together with their ligands, occupy a high hierarchic position in the physiology of insects and steer crucial processes such as development, reproduction, and behavior. In this paper, we give a review of our current knowledge on Drosophila melanogaster GPCRs and use this information to annotate the neurohormone GPCR genes present in the recently sequenced genome from the honey bee Apis mellifera. We found 35 neuropeptide receptor genes in the honey bee (44 in Drosophila) and two genes, coding for leucine-rich repeats-containing protein hormone GPCRs (4 in Drosophila). In addition, the honey bee has 19 biogenic amine receptor genes (21 in Drosophila). The larger numbers of neurohormone receptors in Drosophila are probably due to gene duplications that occurred during recent evolution of the fly. Our analyses also yielded the likely ligands for 40 of the 56 honey bee neurohormone GPCRs identified in this study. In addition, we made some interesting observations on neurohormone GPCR evolution and the evolution and co-evolution of their ligands. For neuropeptide and protein hormone GPCRs, there appears to be a general co-evolution between receptors and their ligands. This is in contrast to biogenic amine GPCRs, where evolutionarily unrelated GPCRs often bind to the same biogenic amine, suggesting frequent ligand exchanges ("ligand hops") during GPCR evolution. (c) 2006 Elsevier Ltd. All rights reserved. KW - GPCR KW - neuropeptide KW - neurohormone KW - hormone KW - biogenic amine Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-44326 ER - TY - JOUR A1 - Hauser, Frank A1 - Cazzamali, Giuseppe A1 - Williamson, Michael A1 - Blenau, Wolfgang A1 - Grimmelikhuijzen, CJ. T1 - A review of neurohormone GPCRs present in the fruitfly "Drosophila melanogaster" and the honey bee "Apis mellifera" N2 - G protein-coupled receptor (GPCR) genes are large gene families in every animal, sometimes making up to 1-2% of the animal's genome. Of all insect GPCRs, the neurohormone (neuropeptide, protein hormone, biogenic amine) GPCRs are especially important, because they, together with their ligands, occupy a high hierarchic position in the physiology of insects and steer crucial processes such as development, reproduction, and behavior. In this paper, we give a review of our current knowledge on Drosophila melanogaster GPCRs and use this information to annotate the neurohormone GPCR genes present in the recently sequenced genome from the honey bee Apis mellifera. We found 35 neuropeptide receptor genes in the honey bee (44 in Drosophila) and two genes, coding for leucine-rich repeats-containing protein hormone GPCRs (4 in Drosophila). In addition, the honey bee has 19 biogenic amine receptor genes (21 in Drosophila). The larger numbers of neurohormone receptors in Drosophila are probably due to gene duplications that occurred during recent evolution of the fly. Our analyses also yielded the likely ligands for 40 of the 56 honey bee neurohormone GPCRs identified in this study. In addition, we made some interesting observations on neurohormone GPCR evolution and the evolution and co-evolution of their ligands. For neuropeptide and protein hormone GPCRs, there appears to be a general co-evolution between receptors and their ligands. This is in contrast to biogenic amine GPCRs, where evolutionarily unrelated GPCRs often bind to the same biogenic amine, suggesting frequent ligand exchanges ("ligand hops") during GPCR evolution. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03010082 U6 - https://doi.org/10.1016/j.pneurobio.2006.07.005 SN - 0301-0082 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. A1 - Tompits, Hans T1 - A Preference-Based Framework for Updating logic Programs : preliminary reports Y1 - 2006 UR - http://www.easychair.org/FLoC-06/PREFS-preproceedings.pdf ER - TY - JOUR A1 - Teller, C. A1 - Halamek, Jan A1 - Makower, Alexander A1 - Fournier, Didier A1 - Schulze, H. A1 - Scheller, Frieder W. T1 - A piezoelectric sensor with propidium as a recognition element for cholinesterases N2 - A piezoelectric biosensor has been developed on the basis of the reversible acetylcholinesterase (AChE) inhibitor propidium. The propidium cation was bound to a 11-mercaptoundecanoic acid monolayer on gold-coated quartz crystals. The immobilization was done via activation of carboxyl groups by 1,3-dicyclohexylcarbodiimide (DCC). Different types of cholinesterases (acetyl- and butyryl-ChE) from different origins were tested for their binding ability towards the immobilized propidium. Binding Studies were performed in a flow system, Furthermore, catalytically active and organophosphate-inhibited enzyme were compared re-aiding their binding capability. The binding constants were derived by using an one to one binding model and a refined model also including rebinding effects. It was shown that organophosphorylation of the active site hardly influences the affinity of AChE towards propidium. Furthermore the propidium-based biosensor provides equal sensitivity as compared with piezolelectric sensors with immobilized paraoxon- an active site ligand of AChE. (c) 2005 Elsevier B.V. All rights reserved Y1 - 2006 U6 - https://doi.org/10.1016/j.snb.2005.02.053 ER - TY - JOUR A1 - Hahnewald, Rita A1 - Leimkühler, Silke A1 - Vilaseca, Antonia A1 - Acquaviva-Bourdain, Cecile A1 - Lenz, Ulrike A1 - Reiss, Jochen T1 - A novel MOCS2 mutation reveals coordinated expression of the small and large subunit of molybdopterin synthase JF - Molecular genetics and metabolism N2 - The small and large subunits of molybdopterin (MPT) synthase (MOCS2A and MOCS2B), are both encoded by the MOCS2 gene in overlapping and shifted open reading frames (ORFs), which is a highly unusual structure for eukaryotes. Theoretical analysis of genomic sequences suggested that the expression of these overlapping ORFs is facilitated by the use of alternate first exons leading to alternative transcripts. Here, we confirm the existence of these overlapping transcripts experimentally. Further, we identified a deletion in a molybdenum cofactor deficient patient, which removes the start codon for the small subunit (MOCS2A). We observed undisturbed production of both transcripts, while Western blot analysis demonstrated that MOCS2B, the large subunit, is unstable in the absence of MOCS2A. This reveals new insights into the expression of this evolutionary ancient anabolic system. KW - molybdenum cofactor deficiency KW - MOCS2 KW - overlapping reading frames Y1 - 2006 U6 - https://doi.org/10.1016/j.ymgme.2006.04.008 SN - 1096-7192 VL - 89 IS - 3 SP - 210 EP - 213 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Kawanabe, Motoaki A1 - Blanchard, Gilles A1 - Sugiyama, Masashi A1 - Spokoiny, Vladimir G. A1 - Müller, Klaus-Robert T1 - A novel dimension reduction procedure for searching non-Gaussian subspaces N2 - In this article, we consider high-dimensional data which contains a low-dimensional non-Gaussian structure contaminated with Gaussian noise and propose a new linear method to identify the non-Gaussian subspace. Our method NGCA (Non-Gaussian Component Analysis) is based on a very general semi-parametric framework and has a theoretical guarantee that the estimation error of finding the non-Gaussian components tends to zero at a parametric rate. NGCA can be used not only as preprocessing for ICA, but also for extracting and visualizing more general structures like clusters. A numerical study demonstrates the usefulness of our method Y1 - 2006 UR - http://www.springerlink.com/content/105633/ U6 - https://doi.org/10.1007/11679363_19 SN - 0302-9743 ER - TY - JOUR A1 - Mériau, Katja A1 - Wartenburger, Isabell A1 - Kazzer, Philipp A1 - Prehn, Kristin A1 - Lammers, Claas-Hinrich A1 - van der Meer, Elke A1 - Villringer, Arno A1 - Heekeren, Hauke R. T1 - A neural network reflecting individual differences in cognitive processing of emotions during perceptual decision making Y1 - 2006 SN - 1053-8119 ER - TY - JOUR A1 - Leimu, Roosa A1 - Koricheva, Julia T1 - A meta-analysis of genetic correlations between plant resistances to multiple enemies N2 - Genetic correlations between plant resistances to multiple natural enemies are important because they have the potential to determine the mode of selection that natural enemies impose on a host plant, the structure of herbivore and pathogen communities, and the success of plant breeding for resistance to multiple diseases and pests. We conducted a meta-analysis of 29 published studies of 16 different plant species reporting a total of 467 genetic correlations between resistances to multiple herbivores or pathogens. In general, genetic associations between resistances to multiple natural enemies tended to be positive regardless of the breeding design, type of attacker, and type of host plant. Positive genetic correlations between resistances were stronger when both attackers were pathogens or generalist herbivores and when resistance to different enemies was tested independently, suggesting that generalists may be affected by the same plant resistance traits and that interactions among natural enemies are common. Although the mean associations between resistances were positive, indicating the prevalence of diffuse selection and generalized defenses against multiple enemies, the large variation in both the strength and the direction of the associations suggests a continuum between pairwise and diffuse selection Y1 - 2006 UR - http://www.jstor.org/action/showPublication?journalCode=amernatu U6 - https://doi.org/10.1086/505766 SN - 0003-0147 ER -