TY - JOUR A1 - Sieber, Melanie J. A1 - Wilke, Max A1 - Appelt, Oona A1 - Oelze, Marcus A1 - Koch-Müller, Monika T1 - Melting relations of Ca-Mg carbonates and trace element signature of carbonate melts up to 9 GPa - a proxy for melting of carbonated mantle lithologies JF - European journal of mineralogy N2 - The most profound consequences of the presence of Ca-Mg carbonates (CaCO3-MgCO3) in the Earth's upper mantle may be to lower the melting temperatures of the mantle and control the melt composition. Low-degree partial melting of a carbonate-bearing mantle produces CO2-rich, silica-poor melts compositionally imposed by the melting relations of carbonates. Thus, understanding the melting relations in the CaCO3-MgCO3 system facilitates the interpretation of natural carbonate-bearing silicate systems. We report the melting relations of the CaCO3-MgCO3 system and the partition coefficient of trace elements between carbonates and carbonate melt from experiments at high pressure (6 and 9 GPa) and temperature (1300-1800 degrees C) using a rocking multi-anvil press. In the absence of water, Ca-Mg carbonates are stable along geothermal gradients typical of subducting slabs. Ca-Mg carbonates ( similar to Mg0.1-0.9Ca0.9-0.1CO3) partially melt beneath mid-ocean ridges and in plume settings. Ca-Mg carbonates melt incongruently, forming periclase crystals and carbonate melt between 4 and 9 GPa. Furthermore, we show that the rare earth element (REE) signature of Group-I kimberlites, namely strong REE fractionation and depletion of heavy REE relative to the primitive mantle, is resembled by carbonate melt in equilibrium with Ca-bearing magnesite and periclase at 6 and 9 GPa. This suggests that the dolomite-magnesite join of the CaCO3-MgCO3 system might be useful to approximate the REE signature of carbonate-rich melts parental to kimberlites. Y1 - 2022 U6 - https://doi.org/10.5194/ejm-34-411-2022 SN - 0935-1221 SN - 1617-4011 VL - 34 IS - 5 SP - 411 EP - 424 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Jia, Zeyu A1 - Lipus, Daniel A1 - Bartholomaeus, Alexander A1 - Burckhardt, Oliver A1 - Sondermann, Megan A1 - Wagner, Dirk A1 - Kallmeyer, Jens T1 - Metagenome-assembled genome of a putative methanogenic Methanosarcina sp. strain enriched from terrestrial high-CO2 subsurface sediments JF - Microbiology Resource Announcements N2 - A metagenome-assembled genome (MAG), named Methanosarcina sp. strain ERenArc_MAG2, was obtained from a 3-month-old H-2/CO2 atmosphere enrichment culture, originally inoculated with 60-m deep drill core sediment collected from the tectonic Eger Rift terrestrial subsurface. Annotation of the recovered draft genome revealed putative archaeal methanogenesis genes in the deep biosphere. A metagenome-assembled genome (MAG), named Methanosarcina sp. strain ERenArc_MAG2, was obtained from a 3-month-old H-2/CO2 atmosphere enrichment culture, originally inoculated with 60-m deep drill core sediment collected from the tectonic Eger Rift terrestrial subsurface. Annotation of the recovered draft genome revealed putative archaeal methanogenesis genes in the deep biosphere. Y1 - 2022 U6 - https://doi.org/10.1128/mra.01039-22 SN - 2576-098X VL - 11 IS - 12 PB - American Society for Microbiology CY - Washington ER - TY - JOUR A1 - Jonas, Wenke A1 - Schwerbel, Kristin A1 - Zellner, Lisa A1 - Jähnert, Markus A1 - Gottmann, Pascal A1 - Schürmann, Annette T1 - Alterations of lipid profile in livers with impaired lipophagy JF - International journal of molecular sciences N2 - Non-alcoholic fatty liver disease (NAFLD) is characterized by excessive lipid accumulation in the liver. Various mechanisms such as an increased uptake in fatty acids or de novo synthesis contribute to the development of steatosis and progression to more severe stages. Furthermore, it has been shown that impaired lipophagy, the degradation of lipids by autophagic processes, contributes to NAFLD. Through an unbiased lipidome analysis of mouse livers in a genetic model of impaired lipophagy, we aimed to determine the resulting alterations in the lipidome. Observed changes overlap with those of the human disease. Overall, the entire lipid content and in particular the triacylglycerol concentration increased under conditions of impaired lipophagy. In addition, we detected a reduction in long-chain polyunsaturated fatty acids (PUFAs) and an increased ratio of n-6 PUFAs to n-3 PUFAs, which was due to the depletion of n-3 PUFAs. Although the abundance of major phospholipid classes was reduced, the ratio of phosphatidylcholines to phosphatidylethanolamines was not affected. In conclusion, this study demonstrates that impaired lipophagy contributes to the pathology of NAFLD and is associated with an altered lipid profile. However, the lipid pattern does not appear to be specific for lipophagic alterations, as it resembles mainly that described in relation to fatty liver disease. KW - non-alcoholic fatty liver disease KW - lipophagy KW - lipidomics KW - fatty acid profile KW - long-chain polyunsaturated fatty acids Y1 - 2022 U6 - https://doi.org/10.3390/ijms231911863 SN - 1422-0067 VL - 23 IS - 19 PB - MDPI CY - Basel ER - TY - JOUR A1 - Huschek, Gerd A1 - Rawel, Harshadrai M. A1 - Schweikert, Torsten A1 - Henkel-Oberländer, Janin A1 - Sagu Tchewonpi, Sorel T1 - Characterization and optimization of microwave-assisted extraction of B-phycoerythrin from Porphyridium purpureum using response surface methodology and Doehlert design JF - Bioresource Technology Reports N2 - Microalgae are one of the most promising food source of the future. Nowadays, extracts of high-value active substances of biomass are business aims for the development of food additives in personalized nutrition, in cosmetics and pharmaceuticals. A new-patented vertical farming cultivation technology was used for production of Porphyridium purpureum. In this work, microwave assisted extraction was used to extract B-phycoerythrin from Porphyridium purpureum biomass. Response surface methodology was implemented for optimization. Numerical optimization established the best point of the experimental domain (biomass/solvent of 16.8 mg/mL, time of 172 s, and temperature of 30 degrees C) with a desirability value of 0.82. Corresponding experimental responses values of 7.2 mg, 8.5 % and 13,961 PA/mu g biomass were obtained for extracted proteins, extraction yield and extracted B-phycoerythrin, respectively. Final freeze-dried product indicated protein content of 55 % using Kjeldahl while targeted mass spectrometry analysis revealed that B-phycoerythrin represented 93 % of the total protein. KW - porphyridium purpureum KW - B-phycoerythrin KW - microwave-assisted extraction KW - optimization KW - mass spectrometry Y1 - 2022 U6 - https://doi.org/10.1016/j.biteb.2022.101212 SN - 2589-014X VL - 19 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Hacker, Philipp A1 - Naumann, Felix A1 - Friedrich, Tobias A1 - Grundmann, Stefan A1 - Lehmann, Anja A1 - Zech, Herbert T1 - AI compliance - challenges of bridging data science and law JF - Journal of Data and Information Quality (JDIQ) N2 - This vision article outlines the main building blocks of what we term AI Compliance, an effort to bridge two complementary research areas: computer science and the law. Such research has the goal to model, measure, and affect the quality of AI artifacts, such as data, models, and applications, to then facilitate adherence to legal standards. KW - AI Act KW - compliance KW - liability KW - privacy KW - transparency KW - information quality Y1 - 2022 U6 - https://doi.org/10.1145/3531532 SN - 1936-1955 SN - 1936-1963 VL - 14 IS - 3 PB - Association for Computing Machinery CY - New York ER - TY - JOUR A1 - Luna, Lisa A1 - Korup, Oliver T1 - Seasonal landslide activity lags annual precipitation pattern in the Pacific Northwest JF - Geophysical research letters N2 - Seasonal variations in landslide activity remain understudied compared to recent advances in landslide early warning at hourly to daily timescales. Here, we learn the seasonal pattern of monthly landslide activity in the Pacific Northwest from five heterogeneous landslide inventories with differing spatial and temporal coverage and reporting protocols combined in a Bayesian multi-level model. We find that landslide activity is distinctly seasonal, with credible increases in landslide intensity, inter-annual variability, and probability marking the onset of the landslide season in November. Peaks in landslide probability in January and intensity in February lag the annual peak in mean monthly precipitation and landslide activity is more variable in winter than in summer, when landslides are rare. For a given monthly rainfall, landslide intensity at the season peak in February is up to 10 times higher than at the onset in November, underlining the importance of antecedent seasonal hillslope conditions. KW - landslide KW - seasonality KW - Pacific Northwest KW - Bayesian multi-level models KW - logistic regression KW - negative binomial regression Y1 - 2022 U6 - https://doi.org/10.1029/2022GL098506 SN - 0094-8276 SN - 1944-8007 VL - 49 IS - 18 PB - Wiley CY - Hoboken, NJ ER - TY - JOUR A1 - Lachmair, Martin A1 - Fischer, Martin H. A1 - Gerjets, Peter T1 - Action-control mappings of interfaces in virtual reality: a study of embodied interaction JF - Frontiers in virtual reality N2 - The development of interface technologies is driven by the goal of making interaction more positive through natural action-control mappings. In Virtual Reality (VR), the entire body is potentially involved for interaction, using such mappings with a maximum of degrees of freedom. The downside is the increase in interaction complexity, which can dramatically influence interface design. A cognitive perspective on detailed aspects of interaction patterns is lacking in common interface design guidelines, although it can be helpful to make this complexity controllable and, thus, make interaction behavior predictable. In the present study, the distinction between grounding, embodiment, and situatedness (the GES framework) is applied to organize aspects of interactions and to compare them with each other. In two experiments, zooming into or out of emotional pictures through changes of arm span was examined in VR. There are qualitatively different aspects during such an interaction: i) perceptual aspects caused by zooming are fundamental for human behavior (Grounding: closer objects appear bigger) and ii) aspects of gestures correspond to the physical characteristics of the agents (Embodiment: little distance of hands signals little or, in contrast, "creating more detail"). The GES-framework sets aspects of Grounding against aspects of Embodiment, thus allowing to predict human behavior regarding these qualitatively different aspects. For the zooming procedure, the study shows that Grounding can overrule Embodiment in interaction design. Thus, we propose GES as a cognitive framework that can help to inform interaction guidelines for user interface design in VR. KW - embodied interaction KW - grounded cognition KW - virtual reality KW - action-control mapping KW - zooming KW - valence KW - user interface KW - embodiment Y1 - 2022 U6 - https://doi.org/10.3389/frvir.2022.976849 SN - 2673-4192 VL - 3 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Ruszkiewicz, Joanna A1 - Papatheodorou, Ylea A1 - Jäck, Nathalie A1 - Melzig, Jasmin A1 - Eble, Franziska A1 - Pirker, Annika A1 - Thomann, Marius A1 - Haberer, Andreas A1 - Rothmiller, Simone A1 - Bürkle, Alexander A1 - Mangerich, Aswin T1 - NAD+ Acts as a protective factor in cellular stress response to DNA alkylating agents JF - Cells : open access journal N2 - Sulfur mustard (SM) and its derivatives are potent genotoxic agents, which have been shown to trigger the activation of poly (ADP-ribose) polymerases (PARPs) and the depletion of their substrate, nicotinamide adenine dinucleotide (NAD+). NAD+ is an essential molecule involved in numerous cellular pathways, including genome integrity and DNA repair, and thus, NAD+ supplementation might be beneficial for mitigating mustard-induced (geno)toxicity. In this study, the role of NAD+ depletion and elevation in the genotoxic stress response to SM derivatives, i.e., the monofunctional agent 2-chloroethyl-ethyl sulfide (CEES) and the crosslinking agent mechlorethamine (HN2), was investigated with the use of NAD+ booster nicotinamide riboside (NR) and NAD+ synthesis inhibitor FK866. The effects were analyzed in immortalized human keratinocytes (HaCaT) or monocyte-like cell line THP-1. In HaCaT cells, NR supplementation, increased NAD+ levels, and elevated PAR response, however, did not affect ATP levels or DNA damage repair, nor did it attenuate long- and short-term cytotoxicities. On the other hand, the depletion of cellular NAD+ via FK866 sensitized HaCaT cells to genotoxic stress, particularly CEES exposure, whereas NR supplementation, by increasing cellular NAD+ levels, rescued the sensitizing FK866 effect. Intriguingly, in THP-1 cells, the NR-induced elevation of cellular NAD+ levels did attenuate toxicity of the mustard compounds, especially upon CEES exposure. Together, our results reveal that NAD+ is an important molecule in the pathomechanism of SM derivatives, exhibiting compound-specificity. Moreover, the cell line-dependent protective effects of NR are indicative of system-specificity of the application of this NAD+ booster. KW - nicotinamide adenine dinucleotide KW - NAD booster; KW - mustard agents KW - nicotinamide riboside KW - DNA damage KW - sulfur mustard KW - poly(ADP-ribosylation) KW - PARP Y1 - 2023 U6 - https://doi.org/10.3390/cells12192396 SN - 2073-4409 VL - 12 IS - 19 PB - MDPI CY - Basel ER - TY - JOUR A1 - Sagu Tchewonpi, Sorel A1 - Rawel, Harshadrai M. A1 - Rohn, Sascha T1 - Targeted bottom-up mass spectrometry approach for the relative quantification of post-translational modification of bovine κ-casein during milk fermentation JF - Molecules N2 - kappa-casein (kappa-CN) is one of the key components in bovine milk, playing a unique role in the structuration of casein micelles. It contains in its chemical structure up to sixteen amino acid residues (mainly serine and threonine) susceptible to modifications, including glycosylation and phosphorylation, which may further be formed during milk processing. In this study, changes in post-translational modification (PTM) of kappa-CN during bovine milk fermentation were investigated. One-to-five-day fermented milk samples were produced. A traditional bottom-up proteomics approach was used to establish a multiple-reaction monitoring (MRM) method for relative quantification of kappa-CN PTM. Endoproteinase Glu-C was found to efficiently digest the kappa-CN molecule. The developed LC-MS method was validated by performing assessments of linearity, precision, repeatability, reproducibility, limit of detection (LOD), and limit of quantification (LOQ). Among the yielded peptides, four of them containing serine and threonine residues were identified and the unmodified as well as the modified variants of each of them were relatively quantified. These peptides were (1) IPTINTIASGEPTSTTE ([140, 158]), (2) STVATLE ([162, 168]), (3) DSPE ([169, 172]), and (4) INTVQVTSTAV ([180, 190]). Distribution analysis between unmodified and modified peptides revealed that over 50% of kappa-CN was found in one of its modified forms in milk. The fermentation process further significantly altered the composition between unmodified/modified kappa-CN, with glycoslaytion being predominant compared to phosphorylation (p < 0.01). Further method development towards alpha and beta-CN fractions and their PTM behavior would be an asset to better understand the changes undergone by milk proteins and the micellar structure during fermentation. KW - bovine milk KW - fermentation KW - kappa-casein KW - post-translational modifications KW - glycosylation KW - phosphorylation KW - mass spectrometry Y1 - 2022 U6 - https://doi.org/10.3390/molecules27185834 SN - 1420-3049 VL - 27 IS - 18 PB - MDPI CY - Basel ER - TY - JOUR A1 - Shlapunov, Alexander A. A1 - Tarchanov, Nikolaj Nikolaevič T1 - Inverse image of precompact sets and regular solutions to the Navier-Stokes equations JF - Vestnik Udmurtskogo Universiteta. Matematika, mechanika, kompʹjuternye nauki N2 - We consider the initial value problem for the Navier-Stokes equations over R-3 x [0, T] with time T > 0 in the spatially periodic setting. We prove that it induces open injective mappings A(s): B-1(s) -> B-2(s-1) where B-1(s), B-2(s-1) are elements from scales of specially constructed function spaces of Bochner-Sobolev typeparametrized with the smoothness index s is an element of N. Finally, we prove that a map Asis surjective if and only if the inverse image A(s)(- 1) (K) of any pre compact set K from the range of the map Asis bounded in the Bochner space L-s([0, T], L-r(T-3))with the Ladyzhenskaya-Prodi-Serrin numbers s, r. KW - Navier-Stokes equations KW - regular solutions Y1 - 2022 U6 - https://doi.org/10.35634/vm220208 SN - 1994-9197 SN - 2076-5959 VL - 32 IS - 2 SP - 278 EP - 297 PB - Udmurtskij gosudarstvennyj universitet CY - Iževsk ER - TY - JOUR A1 - Lück, Erika A1 - Guillemoteau, Julien A1 - Tronicke, Jens A1 - Rummel, Udo A1 - Hierold, Wilfried T1 - From point to field scale-indirect monitoring of soil moisture variations at the DWD test site in Falkenberg JF - Geoderma : an international journal of soil science N2 - Information regarding the spatial distribution of soil water content is key in many disciplines and applications including soil and atmospheric sciences, hydrology, and agricultural engineering. Thus, within the past decades various experimental methods and strategies have been developed to map spatial variations in soil moisture distribution and to monitor temporal changes. Our study examines the combination of electrical resistivity mapping and point observations of soil moisture to infer the spatial and the temporal variability of soil moisture. Over a period of around two years, we performed field measurements on six days to collect repeated electrical resistivity mapping data for a nine-hectare test site south-east of Berlin, Germany. Permanently installed TDR probes, temporary TDR measurements within permanently installed tubes, and gravimetric measurements using soil samples provided soil moisture data at various selected points. In addition, soil analysis and classification results are available for 132 regularly distributed positions up to depths of 1.2 m. We compare and link three-dimensional resistivity models obtained via data inversion to soil composition and soil moisture as provided by our point data. Both the soil samples and the resistivity models indicate a two-layer medium characterized by a sandy top layer with varying thickness and a loamy bottom soil. For all six field campaigns, we observe similar resistivity patterns reflecting the temporally stable influence of soil texture. While the overall patterns are stable, the range of resistivity values changes with soil moisture. Finally, to estimate spatial models of soil moisture, we link our soil moisture and resistivity data using empirical petrophysical models relying on a second order polynomial function. We observe a mean prediction error for soil moisture of +/-0.034 m3 & BULL; m? 3 using all observation points while we notice that point-specific models further reduce the error. Thus, we conclude that our experimental and data analysis strategies represent a reliable approach to establish site-specific models and to estimate three-dimensional moisture distribution including temporal variations. KW - earth boundary layer KW - electrical conductivity KW - electrical resistivity KW - near-surface geophysics KW - soil moisture at field scale Y1 - 2022 U6 - https://doi.org/10.1016/j.geoderma.2022.116134 SN - 0016-7061 SN - 1872-6259 VL - 427 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Stein, Lina A1 - Mukkavilli, Surya Karthik A1 - Wagener, Thorsten T1 - Lifelines for a drowning science - improving findability and synthesis of hydrologic publications JF - Hydrological processes N2 - Increasing publication numbers make it difficult to keep up with knowledge evolution in a science like hydrology. Here we give recommendations to authors and journals for writing future-proof articles that contribute to knowledge accumulation and synthesis. KW - findability KW - hydrology KW - knowledge synthesis KW - natural language processing KW - scholarly publishing KW - text mining Y1 - 2022 U6 - https://doi.org/10.1002/hyp.14742 SN - 0885-6087 SN - 1099-1085 VL - 36 IS - 11 PB - Wiley CY - New York, NY ER - TY - JOUR A1 - Pasechnik, Sergey V. A1 - Shmeleva, Dina A1 - Saidgaziev, Ayvr Sh. A1 - Kharlamov, Semen A1 - Vasilieva, Aleksandra A. A1 - Santer, Svetlana T1 - Shear flows induced by electro-osmotic pumps in optofluidic liquid crystal cell for modulation of visible light and THz irradiation JF - Liquid Crystals and their Application : Russian Journal N2 - The work is devoted to the use of electrokinetic phenomena in liquid crystals to create a new class of microfluidics devices - optofluidics, designed to control electromagnetic radiation, including the THz frequency range. To achieve the goal, an optical method is used to study changes in the orientational structure in LC layers caused by a shear flow generated by electroosmotic pumps. Simula-tion of LC behaviour in an experimental cell containing electroosmotic pumps and flat layers of a nematic liquid crystal is fulfilled. The experimental depend-ences of the intensity of polarized radiation passing through flat LC layers on the control voltage applied to the electroosmotic pump and the results of calcu-lations of the hydrodynamic and mechano-optical characteristics of the experi-mental LC cell are presented. The propagation of THz irradiation across the multilayer structure of the optofluidic cell is considered taking into account the minimum number of re-reflections of waves from different layers and the ab-sorption of THz irradiation in a propylene and a liquid crystal. N2 - Работа посвящена использованию электрокинетических явлений в жидких кристаллах для создания нового класса микрофлюидных устройств – опто- флюидики, предназначенных для управления электромагнитным излуче- нием, в том числе терагерцового диапазона частот. Для достижения цели оптическим методом исследуются изменения ориентационной структуры в слоях ЖК, вызванные сдвиговым течением, генерируемым электроосмоти- ческими насосами. Проведено моделирование поведения ЖК в эксперимен- тальной ячейке, содержащей электроосмотические насосы и плоские слои нематического жидкого кристалла. Представлены экспериментальные за- висимости интенсивности поляризованного излучения, проходящего через плоские слои ЖК, от управляющего напряжения, подаваемого на электро- осмотический насос, и результаты расчетов гидродинамических и механо- оптических характеристик экспериментальной ЖК-ячейки. Рассмотрено распространение ТГц излучения по многослойной структуре оптофлюид- ной ячейки с учетом минимального числа переотражений волн от разных слоев и поглощения ТГц излучения в пропилене и жидком кристалле. KW - nematic liquid crystal KW - terahertz range KW - electrokinetic phenomena KW - osmotic flow KW - director configuration KW - optical irradiation intensity KW - E7 KW - polypropylene Y1 - 2022 U6 - https://doi.org/10.18083/LCAppl.2022.3.49 SN - 1991-3966 SN - 2499–9644 VL - 22 IS - 3 SP - 49 EP - 57 PB - Nanomaterials Research Institute CY - Ivanovo ER - TY - JOUR A1 - Abramova, Olga A1 - Gladkaya, Margarita T1 - Behind videoconferencing fatigue at work JF - Business & information systems engineering N2 - A remarkable peculiarity of videoconferencing (VC) applications – the self-view – a.k.a. digital mirror, is examined as a potential reason behind the voiced exhaustion among users. This work draws on technostress research and objective self-awareness theory and proposes the communication role (sender vs. receiver) as an interaction variable. We report the results of two studies among European employees (n1 = 176, n2 = 253) with a one-year time lag. A higher frequency of self-view in a VC when receiving a message, i.e., listening to others, indirectly increases negative affect (study 1 & 2) and exhaustion (study 2) via the increased state of public self-awareness. Self-viewing in the role of message sender, e.g., as an online presenter, also increases public self-awareness, but its overall effects are less harmful. As for individual differences, users predisposed to public self-consciousness were more concerned with how other VC participants perceived them. Gender effects were insignificant. KW - videoconferencing KW - self-view KW - Zoom fatigue KW - emote work KW - technostress KW - self-awareness Y1 - 2024 U6 - https://doi.org/10.1007/s12599-024-00874-7 SN - 2363-7005 SN - 1867-0202 PB - Springer Fachmedien CY - Wiesbaden ER - TY - JOUR A1 - Huang, Daniel Zhengyu A1 - Huang, Jiaoyang A1 - Reich, Sebastian A1 - Stuart, Andrew M. T1 - Efficient derivative-free Bayesian inference for large-scale inverse problems JF - Inverse problems : an international journal of inverse problems, inverse methods and computerised inversion of data N2 - We consider Bayesian inference for large-scale inverse problems, where computational challenges arise from the need for repeated evaluations of an expensive forward model. This renders most Markov chain Monte Carlo approaches infeasible, since they typically require O(10(4)) model runs, or more. Moreover, the forward model is often given as a black box or is impractical to differentiate. Therefore derivative-free algorithms are highly desirable. We propose a framework, which is built on Kalman methodology, to efficiently perform Bayesian inference in such inverse problems. The basic method is based on an approximation of the filtering distribution of a novel mean-field dynamical system, into which the inverse problem is embedded as an observation operator. Theoretical properties are established for linear inverse problems, demonstrating that the desired Bayesian posterior is given by the steady state of the law of the filtering distribution of the mean-field dynamical system, and proving exponential convergence to it. This suggests that, for nonlinear problems which are close to Gaussian, sequentially computing this law provides the basis for efficient iterative methods to approximate the Bayesian posterior. Ensemble methods are applied to obtain interacting particle system approximations of the filtering distribution of the mean-field model; and practical strategies to further reduce the computational and memory cost of the methodology are presented, including low-rank approximation and a bi-fidelity approach. The effectiveness of the framework is demonstrated in several numerical experiments, including proof-of-concept linear/nonlinear examples and two large-scale applications: learning of permeability parameters in subsurface flow; and learning subgrid-scale parameters in a global climate model. Moreover, the stochastic ensemble Kalman filter and various ensemble square-root Kalman filters are all employed and are compared numerically. The results demonstrate that the proposed method, based on exponential convergence to the filtering distribution of a mean-field dynamical system, is competitive with pre-existing Kalman-based methods for inverse problems. KW - inverse problem KW - uncertainty quantification KW - Bayesian inference KW - derivative-free optimization KW - mean-field dynamical system KW - interacting particle system KW - ensemble Kalman filter Y1 - 2022 U6 - https://doi.org/10.1088/1361-6420/ac99fa SN - 0266-5611 SN - 1361-6420 VL - 38 IS - 12 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Sandhage-Hofmann, Alexandra A1 - Angombe, Simon A1 - Kindermann, Liana A1 - Linstädter, Anja A1 - Mörchen, Ramona T1 - Conservation with elephants and agricultural intensification BT - effects on lignin and n-alkanes in soils of sub-Saharan Africa JF - Geoderma : an international journal of soil science N2 - Nature conservation is currently shaping many terrestrial ecosystems in Africa. This is particularly evident in Sub-Saharan Africa (SSA), where conservation is intended to recover wildlife populations, with special focus on elephants. Rising numbers of elephants induce woody biomass losses but increase soil organic carbon (SOC) stocks from decaying wood and dung. We hypothesized that these increases under wildlife conservation in SSA go along with rising contents of plant residues in SOC, traceable by the molecular markers lignin and n-alkanes. In contrast, agricultural intensification would reduce them due to lower C input and faster SOC turnover through tillage. To test this, we analyzed lignin by the CuO oxidation method and n-alkanes by fast pressurized solvent extraction in topsoils (0-10 cm) of Arenosols and corresponding plant samples (trees, grasses and crops). Sampling sites followed conservation gradients with low, medium and high elephant densities and intensification gradients with rangeland and cropland in the woodland savanna of the Namibian Zambezi Region. Patterns of lignin-derived phenols were retained in the soil, whereas n-alkanes showed shifts in chain lengths. n-Alkanes also showed no clear increase or decrease under conservation or intensification, respectively. Differently, lignin-derived phenols showed lower values under intensification than under conservation. Confirming our hypothesis, rising SOC contents with rising elephant densities (from 4.4 at low to 5.7 g kg(-1) SOC at high elephant densities) went along with an increasing accumulation of lignin-derived phenols (24.4-34.8 g kg(-1) VSCOC). This increase is associated with the input of woody debris to the soil, as indicated by V-units and carbon isotopes, modulated by clay and woody biomass. We conclude, that increasing input of woody residues into soil by browsing behaviour of elephants is an important mechanism for controlling SOC supply in the context of wildlife conservation and is traceable with lignin-derived phenols, but not with n-alkanes. KW - lignin-derived phenols KW - n-alkanes KW - soil organic carbon KW - wildlife conservation KW - agricultural intensification Y1 - 2022 U6 - https://doi.org/10.1016/j.geoderma.2022.116009 SN - 0016-7061 SN - 1872-6259 VL - 425 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Zheng, Chunming A1 - Tönjes, Ralf T1 - Noise-induced swarming of active particles JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We report on the effect of spatially correlated noise on the velocities of self-propelled particles. Correlations in the random forces acting on self-propelled particles can induce directed collective motion, i.e., swarming. Even with repulsive coupling in the velocity directions, which favors a disordered state, strong correlations in the fluctuations can align the velocities locally leading to a macroscopic, turbulent velocity field. On the other hand, while spatially correlated noise is aligning the velocities locally, the swarming transition to globally directed motion is inhibited when the correlation length of the noise is nonzero, but smaller than the system size. We analyze the swarming transition in d-dimensional space in a mean field model of globally coupled velocity vectors. Y1 - 2022 U6 - https://doi.org/10.1103/PhysRevE.106.064601 SN - 2470-0045 SN - 2470-0053 VL - 106 IS - 6 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Wendering, Philipp A1 - Nikoloski, Zoran T1 - Genome-scale modeling specifies the metabolic capabilities of Rhizophagus irregularis JF - mSystems N2 - Rhizophagus irregularis is one of the most extensively studied arbuscular mycorrhizal fungi (AMF) that forms symbioses with and improves the performance of many crops. Lack of transformation protocol for R. irregularis renders it challenging to investigate molecular mechanisms that shape the physiology and interactions of this AMF with plants. Here, we used all published genomics, transcriptomics, and metabolomics resources to gain insights into the metabolic functionalities of R. irregularis by reconstructing its high-quality genome-scale metabolic network that considers enzyme constraints. Extensive validation tests with the enzyme-constrained metabolic model demonstrated that it can be used to (i) accurately predict increased growth of R. irregularis on myristate with minimal medium; (ii) integrate enzyme abundances and carbon source concentrations that yield growth predictions with high and significant Spearman correlation (rS = 0.74) to measured hyphal dry weight; and (iii) simulate growth rate increases with tighter association of this AMF with the host plant across three fungal structures. Based on the validated model and system-level analyses that integrate data from transcriptomics studies, we predicted that differences in flux distributions between intraradical mycelium and arbuscles are linked to changes in amino acid and cofactor biosynthesis. Therefore, our results demonstrated that the enzyme-constrained metabolic model can be employed to pinpoint mechanisms driving developmental and physiological responses of R. irregularis to different environmental cues. In conclusion, this model can serve as a template for other AMF and paves the way to identify metabolic engineering strategies to modulate fungal metabolic traits that directly affect plant performance. IMPORTANCE Mounting evidence points to the benefits of the symbiotic interactions between the arbuscular mycorrhiza fungus Rhizophagus irregularis and crops; however, the molecular mechanisms underlying the physiological responses of this fungus to different host plants and environments remain largely unknown. We present a manually curated, enzyme-constrained, genome-scale metabolic model of R. irregularis that can accurately predict experimentally observed phenotypes. We show that this high-quality model provides an entry point into better understanding the metabolic and physiological responses of this fungus to changing environments due to the availability of different nutrients. The model can be used to design metabolic engineering strategies to tailor R. irregularis metabolism toward improving the performance of host plants. KW - Rhizophagus irregularis KW - metabolic modeling Y1 - 2022 U6 - https://doi.org/10.1128/msystems.01216-21 SN - 2379-5077 VL - 7 IS - 1 PB - American Society for Microbiology CY - Washington, DC ER - TY - JOUR A1 - Anger, Silke A1 - Christoph, Bernhard A1 - Galkiewicz, Agata A1 - Margaryan, Shushanik A1 - Peter, Frauke A1 - Sandner, Malte A1 - Siedler, Thomas T1 - War, international spillovers, and adolescents BT - evidence from Russia’s invasion of Ukraine in 2022 JF - Journal of Economic Behavior & Organization N2 - Using novel longitudinal data, this paper studies the short- and medium-term effects of Russia's invasion of Ukraine on February 24, 2022 on social trust of adolescents in Germany. Comparing adolescents who responded to our survey shortly before the start of the war with those who responded shortly after the conflict began and applying difference-in-differences (DiD) models over time, we find a significant decline in the outcome after the war started. These findings provide new evidence on how armed conflicts influence social trust and well-being among young people in a country not directly involved in the war. KW - war KW - trust KW - social capital KW - Russia’s invasion of Ukraine Y1 - 2024 U6 - https://doi.org/10.1016/j.jebo.2024.03.009 SN - 0167-2681 SN - 1879-1751 VL - 224 SP - 181 EP - 193 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Rinker, Tanja A1 - Bloder, Theresa Sophie A1 - Plötner, Kathleen T1 - Italian and German lexical development in Italian heritage speakers in kindergarten and elementary school settings JF - Lingue e linguaggio / Dipartimento di Lingue N2 - Language development in children with a heritage language background is often characterized by a shift towards the majority language once children enter formal educational contexts. In Germany, educational programs that target heritage languages are scarce. It is therefore of interest whether children with a heritage language background can benefit from a bilingual program targeting their heritage language. In this paper, we report data on the lexical skills of Italian heritage children in two educational contexts, bilingual Italian-German kindergartens and a bilingual Italian-German elementary school. We examine (1) developmental trajectories of children's lexical skills in German and Italian, (2) differences between noun and verb development, (3) differences between lexical production and comprehenand Italian, kindergarteners showed balanced receptive vocabulary skills. By contrast, elementary school-children had a larger German than Italian vocabulary. Both groups demonstrated a clear dominance of nouns over verbs. While school children already performed at ceiling in German at the end of first grade, across the school years, their Italian vocabulary increased, nouns in particular. KW - Italian heritage language KW - lexical development KW - bilingual Italian-German education Y1 - 2022 U6 - https://doi.org/10.1418/104449 SN - 1720-9331 VL - 21 IS - 1 SP - 53 EP - 72 PB - Società editrice il Mulino CY - Bologna ER -