TY - THES A1 - Villatoro Leal, José Andrés T1 - A combined approach for the analysis of biomolecules using IR-MALDI ion mobility spectrometry and molecular dynamics simulations of peptide ions in the gas phase T1 - Kombinierter Einsatz von IR-MALDI Ionenmobilitätsspektrometrie und Simulationen der Molekulardynamik von Peptidionen in der Gasphase zur Analyse von Biomolekülen N2 - The aim of this doctoral thesis was to establish a technique for the analysis of biomolecules with infrared matrix-assisted laser dispersion (IR-MALDI) ion mobility (IM) spectrometry. The main components of the work were the characterization of the IR-MALDI process, the development and characterization of different ion mobility spectrometers, the use of IR-MALDI-IM spectrometry as a robust, standalone spectrometer and the development of a collision cross-section estimation approach for peptides based on molecular dynamics and thermodynamic reweighting. First, the IR-MALDI source was studied with atmospheric pressure ion mobility spectrometry and shadowgraphy. It consisted of a metal capillary, at the tip of which a self-renewing droplet of analyte solution was met by an IR laser beam. A relationship between peak shape, ion desolvation, diffusion and extraction pulse delay time (pulse delay) was established. First order desolvation kinetics were observed and related to peak broadening by diffusion, both influenced by the pulse delay. The transport mechanisms in IR-MALDI were then studied by relating different laser impact positions on the droplet surface to the corresponding ion mobility spectra. Two different transport mechanisms were determined: phase explosion due to the laser pulse and electrical transport due to delayed ion extraction. The velocity of the ions stemming from the phase explosion was then measured by ion mobility and shadowgraphy at different time scales and distances from the source capillary, showing an initially very high but rapidly decaying velocity. Finally, the anatomy of the dispersion plume was observed in detail with shadowgraphy and general conclusions over the process were drawn. Understanding the IR-MALDI process enabled the optimization of the different IM spectrometers at atmospheric and reduced pressure (AP and RP, respectively). At reduced pressure, both an AP and an RP IR-MALDI source were used. The influence of the pulsed ion extraction parameters (pulse delay, width and amplitude) on peak shape, resolution and area was systematically studied in both AP and RP IM spectrometers and discussed in the context of the IR-MALDI process. Under RP conditions, the influence of the closing field and of the pressure was also examined for both AP and RP sources. For the AP ionization RP IM spectrometer, the influence of the inlet field (IF) in the source region was also examined. All of these studies led to the determination of the optimal analytical parameters as well as to a better understanding of the initial ion cloud anatomy. The analytical performance of the spectrometer was then studied. Limits of detection (LOD) and linear ranges were determined under static and pulsed ion injection conditions and interpreted in the context of the IR-MALDI mechanism. Applications in the separation of simple mixtures were also illustrated, demonstrating good isomer separation capabilities and the advantages of singly charged peaks. The possibility to couple high performance liquid chromatography (HPLC) to IR-MALDI-IM spectrometry was also demonstrated. Finally, the reduced pressure spectrometer was used to study the effect of high reduced field strength on the mobility of polyatomic ions in polyatomic gases. The last focus point was on the study of peptide ions. A dataset obtained with electrospray IM spectrometry was characterized and used for the calibration of a collision cross-section (CCS) determination method based on molecular dynamics (MD) simulations at high temperature. Instead of producing candidate structures which are evaluated one by one, this semi-automated method uses the simulation as a whole to determine a single average collision cross-section value by reweighting the CCS of a few representative structures. The method was compared to the intrinsic size parameter (ISP) method and to experimental results. Additional MD data obtained from the simulations was also used to further analyze the peptides and understand the experimental results, an advantage with regard to the ISP method. Finally, the CCS of peptide ions analyzed by IR-MALDI were also evaluated with both ISP and MD methods and the results compared to experiment, resulting in a first validation of the MD method. Thus, this thesis brings together the soft ionization technique that is IR-MALDI, which produces mostly singly charged peaks, with ion mobility spectrometry, which can distinguish between isomers, and a collision cross-section determination method which also provides structural information on the analyte at hand. N2 - Das Ziel dieser Arbeit war die Zusammenführung der schonende Ionisationsquelle Infrared Matrix-Assisted Laser Dispersion Ionization (IR-MALDI), der Isomer-diskriminierende Ionenmobilitätsspektrometrie und einer neuartigen, auf Molecular Dynamics (MD) Simulationen basierte Berechnungsmethode für Stoßquerschnitte. Der erste Schritt war die Charakterisierung des Flüssigkeitsdispersionsphänomens in IR-MALDI: Zwei verschiedenen Ionentransportmechanismen wurden nachgewiesen und weiter studiert. Die Beziehung zwischen Peakform, Diffusion, Desolvatation und Ionen Extraktionspuls wurde beschrieben. Die Geschwindigkeit der Ionen, die aus dem Dispersionsphänomen stammen, wurde durch Ionenmobilitätsspektrometrie und Shadowgraphie untersucht. Shadowgraphie hat ebenfalls das Verhalten des Dispersionsphänomens erläutert. Eine hohe, schnell abklingende initielle Geschwindigkeit wurde beobachtet. Das Verständnis des IR-MALDI Verfahrens ermöglichte die Optimierung der verschiedenen Ionenmobilität (IM) Spektrometer zum analytischen Zweck. Eine Atmosphärendruck- und zwei Niederdruckvariante von IM Spektrometern wurden mit gepulster Ionenextraktion genutzt. Die Pulsparameter (Pulsverzögerung, ‑breite, -höhe) und verschiedene elektrische Felder an unterschiedlichen Stellen der Spektrometer wurden systematisch variiert. Deren Einfluss auf die Peakauflösung und -fläche wurde untersucht und im Rahmen des IR-MALDI Verfahrens erklärt. Das Verständnis der Anatomie der Anfangsionenwolke wurde ebenfalls durch diese Experimente vertieft. Die analytische Leistungsfähigkeit eines IM-Spektrometers wurde dann untersucht. Nachweisgrenzen und lineare Bereiche wurden bestimmt und in Zusammenhang mit dem IR-MALDI Verfahren interpretiert. Anhand der Trennung von Isomeren und einfachen Mischungen wurde die Anwendung dieser Technik demonstriert und ihre Vorteile, die Detektion einfachgeladener Ionen und die Möglichkeit der HPLC-Kopplung (High Performance Liquid Chromatography), aufgezeigt. Mit dem Niederdruckspektrometer wurde der Einfluss hoher reduzierter Feldstärken auf die Ionenmobilität von polyatomische Ionen in polyatomische Gasen untersucht. Der letzte Schwerpunkt war die Charakterisierung von Peptidionen. Die Peptiden wurden mit Elektrospray (ESI) IM-Spektrometrie vermessen. Der hieraus erhaltene Datensatz diente zur Etablierung einer Stoßquerschnitt Berechnungsmethode mittels MD. Anstatt verschiedener Kandidat-Strukturen und deren Stoßquerschnitte, ergibt diese neuartige semi-automatisierte Methode einen einzigen, gemittelten Stoßquerschnitt. Die MD Methode wurde dann mit einer anderen, einfacheren Methode und mit den experimentellen Ergebnissen von ESI und IR-MALDI-IM Spektrometrie verglichen. Zudem wurde der Zusammenhang zwischen Ladungszustands- und Stoßquerschnittsdifferenzen zwischen den Peptiden untersucht. Weitere Strukturelle Informationen konnten aus den Simulationen extrahiert, und zur Charakterisierung der Peptiden verwendet werden. KW - Ion mobility spectrometry KW - Molecular dynamics KW - IR-MALDI KW - Peptides KW - Shadowgraphy KW - Liquid dispersion KW - Ionenmobilitätsspektrometrie KW - Molekulardynamik KW - Collision cross-section KW - IR-MALDI KW - Peptiden KW - Shadowgraphie KW - Stoßquerschnitt KW - Flüssigkeitszerstäubung Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-419723 ER - TY - JOUR A1 - Tuncaboylu, Deniz Ceylan A1 - Friess, Fabian A1 - Wischke, Christian A1 - Lendlein, Andreas T1 - A multifunctional multimaterial system for on-demand protein release JF - Journal of controlled release N2 - In order to provide best control of the regeneration process for each individual patient, the release of protein drugs administered during surgery may need to be timely adapted and/or delayed according to the progress of healing/regeneration. This study aims to establish a multifunctional implant system for a local on-demand release, which is applicable for various types of proteins. It was hypothesized that a tubular multimaterial container kit, which hosts the protein of interest as a solution or gel formulation, would enable on-demand release if equipped with the capacity of diameter reduction upon external stimulation. Using devices from poly(epsilon-caprolactone) networks, it could be demonstrated that a shape-memory effect activated by heat or NIR light enabled on-demand tube shrinkage. The decrease of diameter of these shape-memory tubes (SMT) allowed expelling the payload as demonstrated for several proteins including SDF-1 alpha, a therapeutically relevant chemotactic protein, to achieve e.g. continuous release with a triggered add-on dosing (open tube) or an on-demand onset of bolus or sustained release (sealed tube). Considering the clinical relevance of protein factors in (stem) cell attraction to lesions and the progress in monitoring biomarkers in body fluids, such on-demand release systems may be further explored e.g. in heart, nerve, or bone regeneration in the future. KW - Shape-memory polymer KW - On-demand release KW - Proteins KW - Poly(epsilon-caprolactone) networks KW - Near infrared light triggered shape-recovery Y1 - 2018 U6 - https://doi.org/10.1016/j.jconrel.2018.06.022 SN - 0168-3659 SN - 1873-4995 VL - 284 SP - 240 EP - 247 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Schmidt, Bernd A1 - Schultze, Christiane T1 - A one-pot synthesis of pyranocoumarins through microwave-promoted propargyl claisen rearrangement/wittig olefination JF - European journal of organic chemistry N2 - The reaction between propargyl ethers of hydroxybenzaldehydes and the ylide ethyl (triphenylphosphoranylidene)acetate was carried out under microwave irradiation to regioselectively afford angular pyranocoumarins. The chromene and coumarin heterocyclic scaffolds were simultaneously formed in the same synthetic step without changing the reaction conditions. The natural products seselin, braylin, and dipetalolactone were among the products synthesized by this method. KW - Domino reactions KW - Alkynes KW - Arenes KW - Oxygen heterocycles KW - Microwave chemistry KW - Rearrangement Y1 - 2017 SN - 1434-193X SN - 1099-0690 VL - 2018 IS - 2 SP - 223 EP - 227 PB - Wiley-VCH Verl. CY - Weinheim ER - TY - JOUR A1 - Schwarze, Thomas A1 - Riemer, Janine A1 - Holdt, Hans-Jürgen T1 - A Ratiometric Fluorescent Probe for K+ in Water Based on a Phenylaza-18-Crown-6 Lariat Ether JF - Chemistry - a European journal N2 - This work presents two molecular fluorescent probes 1 and 2 for the selective determination of physiologically relevant K+ levels in water based on a highly K+/Na+ selective building block, the o-(2-methoxyethoxy)phenylaza-18-crown-6 lariat ether unit. Fluorescent probe 1 showed a high K+-induced fluorescence enhancement (FE) by a factor of 7.7 of the anthracenic emission and a dissociation constant (K-d) value of 38mm in water. Further, for 2+K+, we observed a dual emission behavior at 405 and 505nm. K+ increases the fluorescence intensity of 2 at 405nm by a factor of approximately 4.6 and K+ decreases the fluorescence intensity at 505nm by a factor of about 4.8. Fluorescent probe 2+K+ exhibited a K-d value of approximately 8mm in Na+-free solutions and in combined K+/Na+ solution a similar K-d value of about 9mm was found, reflecting the high K+/Na+ selectivity of 2 in water. Therefore, 2 is a promising fluorescent tool to measure ratiometrically and selectively physiologically relevant K+ levels. KW - charge transfer KW - crown compounds KW - fluorescence KW - potassium KW - ratiometric sensors Y1 - 2018 U6 - https://doi.org/10.1002/chem.201802306 SN - 0947-6539 SN - 1521-3765 VL - 24 IS - 40 SP - 10116 EP - 10121 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Guo, Ranran A1 - Tian, Ye A1 - Yang, Yueqi A1 - Jiang, Qin A1 - Wang, Yajun A1 - Yang, Wuli T1 - A Yolk-Shell nanoplatform for gene-silencing-enhanced photolytic ablation of cancer JF - Advanced functional materials N2 - Noninvasive near-infrared (NIR) light responsive therapy is a promising cancer treatment modality; however, some inherent drawbacks of conventional phototherapy heavily restrict its application in clinic. Rather than producing heat or reactive oxygen species in conventional NIR treatment, here a multifunctional yolk-shell nanoplatform is proposed that is able to generate microbubbles to destruct cancer cells upon NIR laser irradiation. Besides, the therapeutic effect is highly improved through the coalition of small interfering RNA (siRNA), which is codelivered by the nanoplatform. In vitro experiments demonstrate that siRNA significantly inhibits expression of protective proteins and reduces the tolerance of cancer cells to bubble-induced environmental damage. In this way, higher cytotoxicity is achieved by utilizing the yolk-shell nanoparticles than treated with the same nanoparticles missing siRNA under NIR laser irradiation. After surface modification with polyethylene glycol and transferrin, the yolk-shell nanoparticles can target tumors selectively, as demonstrated from the photoacoustic and ultrasonic imaging in vivo. The yolk-shell nanoplatform shows outstanding tumor regression with minimal side effects under NIR laser irradiation. Therefore, the multifunctional nanoparticles that combining bubble-induced mechanical effect with RNA interference are expected to be an effective NIR light responsive oncotherapy. KW - cancer KW - gene silencing KW - near-infrared absorption KW - photolytic ablation KW - yolk-shell nanoparticles Y1 - 2018 U6 - https://doi.org/10.1002/adfm.201706398 SN - 1616-301X SN - 1616-3028 VL - 28 IS - 14 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Geroldinger, Gerald A1 - Tonner, Matthias A1 - Fudickar, Werner A1 - De Sarkar, Sritama A1 - Dighal, Aishwarya A1 - Monzote, Lianet A1 - Staniek, Katrin A1 - Linker, Torsten A1 - Chatterjee, Mitali A1 - Gille, Lars T1 - Activation of anthracene endoperoxides in leishmania and impairment of mitochondrial functions JF - Molecules N2 - Leishmaniasis is a vector-borne disease caused by protozoal Leishmania. Because of resistance development against current drugs, new antileishmanial compounds are urgently needed. Endoperoxides (EPs) are successfully used in malaria therapy, and experimental evidence of their potential against leishmaniasis exists. Anthracene endoperoxides (AcEPs) have so far been only technically used and not explored for their leishmanicidal potential. This study verified the in vitro efficiency and mechanism of AcEPs against both Leishmania promastigotes and axenic amastigotes (L. tarentolae and L. donovani) as well as their toxicity in J774 macrophages. Additionally, the kinetics and radical products of AcEPs’ reaction with iron, the formation of radicals by AcEPs in Leishmania, as well as the resulting impairment of parasite mitochondrial functions were studied. Using electron paramagnetic resonance combined with spin trapping, photometry, and fluorescence-based oximetry, AcEPs were demonstrated to (i) show antileishmanial activity in vitro at IC50 values in a low micromolar range, (ii) exhibit host cell toxicity in J774 macrophages, (iii) react rapidly with iron (II) resulting in the formation of oxygen- and carbon-centered radicals, (iv) produce carbon-centered radicals which could secondarily trigger superoxide radical formation in Leishmania, and (v) impair mitochondrial functions in Leishmania during parasite killing. Overall, the data of different AcEPs demonstrate that their structures besides the peroxo bridge strongly influence their activity and mechanism of their antileishmanial action. KW - Leishmania KW - endoperoxides KW - EPR spectroscopy KW - mitochondria KW - radicals Y1 - 2018 U6 - https://doi.org/10.3390/molecules23071680 SN - 1420-3049 VL - 23 IS - 7 PB - MDPI CY - Basel ER - TY - JOUR A1 - Yaouba, Souaibou A1 - Koch, Andreas A1 - Guantai, Eric M. A1 - Derese, Solomon A1 - Irungu, Beatrice A1 - Heydenreich, Matthias A1 - Yenesew, Abiy T1 - Alkenyl cyclohexanone derivatives from Lannea rivae and Lannea schweinfurthii JF - Phytochemistry letters / Phytochemical Society of Europe N2 - Phytochemical investigation of the CH2Cl2/MeOH (1:1) extract of the roots of Lannea rivae (Chiov) Sacleux (Anacardiaceae) led to the isolation of a new alkenyl cyclohexenone derivative: (4R,6S)-4,6-dihydroxy-6-((Z)-nonadec-14′-en-1-yl)cyclohex-2-en-1-one (1), and a new alkenyl cyclohexanol derivative: (2S*,4R*,5S*)-2,4,5-trihydroxy-2-((Z)-nonadec-14′-en-1-yl)cyclohexanone (2) along with four known compounds, namely epicatechin gallate, taraxerol, taraxerone and β-sitosterol; while the stem bark afforded two known compounds, daucosterol and lupeol. Similar investigation of the roots of Lannea schweinfurthii (Engl.) Engl. led to the isolation of four known compounds: 3-((E)-nonadec-16′-enyl)phenol, 1-((E)-heptadec-14′-enyl)cyclohex-4-ene-1,3-diol, catechin, and 1-((E)-pentadec-12′-enyl)cyclohex-4-ene-1,3-diol. The structures of the isolated compounds were determined by NMR spectroscopy and mass spectrometry. The absolute configuration of compound 1 was established by quantum chemical ECD calculations. In an antibacterial activity assay using the microbroth kinetic method, compound 1 showed moderate activity against Escherichia coli while compound 2 exhibited moderate activity against Staphylococcus aureus. Compound 1 also showed moderate activity against E. coli using the disc diffusion method. The roots extract of L. rivae was notably cytotoxic against both the DU-145 prostate cancer cell line and the Vero mammalian cell line (CC50 = 5.24 and 5.20 μg/mL, respectively). Compound 1 was also strongly cytotoxic against the DU-145 cell line (CC50 = 0.55 μg/mL) but showed no observable cytotoxicity (CC50 > 100 μg/mL) against the Vero cell line. The roots extract of L. rivae and L. schweinfurthii, epicatechin gallate as well as compound 1 exhibited inhibition of carageenan-induced inflammation. KW - Lannea rivae KW - Lannea schweinfurthii KW - Alkenyl cyclohexenone KW - Alkenyl cyclohexanone KW - Anti-inflammatory KW - Cytotoxicity KW - Antimicrobial Y1 - 2017 U6 - https://doi.org/10.1016/j.phytol.2017.12.001 SN - 1874-3900 SN - 1876-7486 VL - 23 SP - 141 EP - 148 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Plötz, Per-Arno A1 - Megow, Jörg A1 - Niehaus, Thomas A1 - Kühn, Oliver T1 - All-DFTB Approach to the Parametrization of the System-Bath Hamiltonian Describing Exciton-Vibrational Dynamics of Molecular Assemblies JF - Journal of chemical theory and computation N2 - Spectral density functions are central to the simulation of complex many body systems. Their determination requires making approximations not only to the dynamics but also to the underlying electronic structure theory. Here, blending different methods bears the danger of an inconsistent description. To solve this issue we propose an all-DFTB approach to determine spectral densities for the description of Frenkel excitons in molecular assemblies. The protocol is illustrated for a model of a PTCDI crystal, which involves the calculation of monomeric excitation energies and Coulomb couplings between monomer transitions, as well as their spectral distributions due to thermal fluctuations of the nuclei. Using dynamically defined normal modes, a mapping onto the standard harmonic oscillator spectral densities is achieved. Y1 - 2018 U6 - https://doi.org/10.1021/acs.jctc.8b00493 SN - 1549-9618 SN - 1549-9626 VL - 14 IS - 10 SP - 5001 EP - 5010 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Wolff, Christian Michael A1 - Frischmann, Peter D. A1 - Schulze, Marcus A1 - Bohn, Bernhard J. A1 - Wein, Robin A1 - Livadas, Panajotis A1 - Carlson, Michael T. A1 - Jäckel, Frank A1 - Feldmann, Jochen A1 - Würthner, Frank A1 - Stolarczyk, Jacek K. T1 - All-in-one visible-light-driven water splitting by combining nanoparticulate and molecular co-catalysts on CdS nanorods JF - Nature Energy N2 - Full water splitting into hydrogen and oxygen on semiconductor nanocrystals is a challenging task; overpotentials must be overcome for both half-reactions and different catalytic sites are needed to facilitate them. Additionally, efficient charge separation and prevention of back reactions are necessary. Here, we report simultaneous H-2 and O-2 evolution by CdS nanorods decorated with nanoparticulate reduction and molecular oxidation co-catalysts. The process proceeds entirely without sacrificial agents and relies on the nanorod morphology of CdS to spatially separate the reduction and oxidation sites. Hydrogen is generated on Pt nanoparticles grown at the nanorod tips, while Ru(tpy)(bpy)Cl-2-based oxidation catalysts are anchored through dithiocarbamate bonds onto the sides of the nanorod. O-2 generation from water was verified by O-18 isotope labelling experiments, and time-resolved spectroscopic results confirmed efficient charge separation and ultrafast electron and hole transfer to the reaction sites. The system demonstrates that combining nanoparticulate and molecular catalysts on anisotropic nanocrystals provides an effective pathway for visible-light-driven photocatalytic water splitting. Y1 - 2018 U6 - https://doi.org/10.1038/s41560-018-0229-6 SN - 2058-7546 VL - 3 IS - 10 SP - 862 EP - 869 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Ehlert, Christopher A1 - Gühr, Markus A1 - Saalfrank, Peter T1 - An efficient first principles method for molecular pump-probe NEXAFS spectra BT - application to thymine and azobenzene JF - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr N2 - Pump-probe near edge X-ray absorption fine structure (PP-NEXAFS) spectra of molecules offer insight into valence-excited states, even if optically dark. In PP-NEXAFS spectroscopy, the molecule is "pumped" by UV or visible light enforcing a valence excitation, followed by an X-ray "probe" exciting core electrons into (now) partially empty valence orbitals. Calculations of PP-NEXAFS have so far been done by costly, correlated wavefunction methods which are not easily applicable to medium-sized or large molecules. Here we propose an efficient, first principles method based on density functional theory in combination with the transition potential and Delta SCF methodology (TP-DFT/Delta SCF) to compute molecular ground state and PP-NEXAFS spectra. We apply the method to n ->pi* pump/O-K-edge NEXAFS probe spectroscopy of thymine (for which both experimental and other theoretical data exist) and to n -> pi* or pi -> pi* pump/N-K-edge NEXAFS probe spectroscopies of trans-and cis-azobenzene. Published by AIP Publishing. Y1 - 2018 U6 - https://doi.org/10.1063/1.5050488 SN - 0021-9606 SN - 1089-7690 VL - 149 IS - 14 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Heck, Christian A1 - Michaeli, Yael A1 - Bald, Ilko A1 - Ebenstein, Yuval T1 - Analytical epigenetics BT - single-molecule optical detection of DNA and histone modifications JF - Current Opinion in Biotechnology N2 - The field of epigenetics describes the relationship between genotype and phenotype, by regulating gene expression without changing the canonical base sequence of DNA. It deals with molecular genomic information that is encoded by a rich repertoire of chemical modifications and molecular interactions. This regulation involves DNA, RNA and proteins that are enzymatically tagged with small molecular groups that alter their physical and chemical properties. It is now clear that epigenetic alterations are involved in development and disease, and thus, are the focus of intensive research. The ability to record epigenetic changes and quantify them in rare medical samples is critical for next generation diagnostics. Optical detection offers the ultimate single-molecule sensitivity and the potential for spectral multiplexing. Here we review recent progress in ultrasensitive optical detection of DNA and histone modifications. Y1 - 2018 U6 - https://doi.org/10.1016/j.copbio.2018.09.006 SN - 0958-1669 SN - 1879-0429 VL - 55 SP - 151 EP - 158 PB - Elsevier CY - London ER - TY - JOUR A1 - Hoang, Hoa T. A1 - Mertens, Monique A1 - Wessig, Pablo A1 - Sellrie, Frank A1 - Schenk, Jörg A. A1 - Kumke, Michael Uwe T1 - Antibody Binding at the Liposome-Water Interface BT - a FRET Investigation toward a Liposome-Based Assay JF - ACS Omega N2 - Different signal amplification strategies to improve the detection sensitivity of immunoassays have been applied which utilize enzymatic reactions, nanomaterials, or liposomes. The latter are very attractive materials for signal amplification because liposomes can be loaded with a large amount of signaling molecules, leading to a high sensitivity. In addition, liposomes can be used as a cell-like "bioscaffold" to directly test recognition schemes aiming at cell-related processes. This study demonstrates an easy and fast approach to link the novel hydrophobic optical probe based on [1,3]dioxolo[4,5-f]-[1,3]benzodioxole (DBD dye mm239) with tunable optical properties to hydrophilic recognition elements (e.g., antibodies) using liposomes for signal amplification and as carrier of the hydrophobic dye. The fluorescence properties of mm239 (e.g., long fluorescence lifetime, large Stokes shift, high photostability, and high quantum yield), its high hydrophobicity for efficient anchoring in liposomes, and a maleimide bioreactive group were applied in a unique combination to build a concept for the coupling of antibodies or other protein markers to liposomes (coupling to membranes can be envisaged). The concept further allowed us to avoid multiple dye labeling of the antibody. Here, anti-TAMRA-antibody (DC7-Ab) was attached to the liposomes. In proof-of-concept, steady-state as well as time-resolved fluorescence measurements (e.g., fluorescence depolarization) in combination with single molecule detection (fluorescence correlation spectroscopy, FCS) were used to analyze the binding interaction between DC7-Ab and liposomes as well as the binding of the antigen rhodamine 6G (R6G) to the antibody. Here, the Forster resonance energy transfer (FRET) between mm239 and R6G was monitored. In addition to ensemble FRET data, single-molecule FRET (PIE-FRET) experiments using pulsed interleaved excitation were used to characterize in detail the binding on a single-molecule level to avoid averaging out effects. KW - energy-transfer KW - immunoassay KW - complexes KW - probes Y1 - 2018 U6 - https://doi.org/10.1021/acsomega.8b03016 SN - 2470-1343 VL - 3 IS - 12 SP - 18109 EP - 18116 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Muiva-Mutisya, Lois M. A1 - Atilaw, Yoseph A1 - Heydenreich, Matthias A1 - Koch, Andreas A1 - Akala, Hoseah M. A1 - Cheruiyot, Agnes C. A1 - Brown, Matthew L. A1 - Irungu, Beatrice A1 - Okalebo, Faith A. A1 - Derese, Solomon A1 - Mutai, Charles A1 - Yenesew, Abiy T1 - Antiplasmodial prenylated flavanonols from Tephrosia subtriflora JF - Natural Product Research N2 - The CH2Cl2/MeOH (1:1) extract of the aerial parts of Tephrosia subtriflora afforded a new flavanonol, named subtriflavanonol (1), along with the known flavanone spinoflavanone B, and the known flavanonols MS-II (2) and mundulinol. The structures were elucidated by the use of NMR spectroscopy and mass spectrometry. The absolute configuration of the flavanonols was determined based on quantum chemical ECD calculations. In the antiplasmodial assay, compound 2 showed the highest activity against chloroquine-sensitive Plasmodiumfalciparum reference clones (D6 and 3D7), artemisinin-sensitive isolate (F32-TEM) as well as field isolate (KSM 009) with IC50 values 1.4-4.6M without significant cytotoxicity against Vero and HEp2 cell lines (IC50>100M). The new compound (1) showed weak antiplasmodial activity, IC50 12.5-24.2M, but also showed selective anticancer activity against HEp2 cell line (CC50 16.9M). [GRAPHICS] . KW - Tephrosia subtriflora KW - Leguminosae KW - prenylated flavanonol KW - subtriflavanonol KW - antiplasmodial KW - cytotoxicity Y1 - 2018 U6 - https://doi.org/10.1080/14786419.2017.1353510 SN - 1478-6419 SN - 1478-6427 VL - 32 IS - 12 SP - 1407 EP - 1414 PB - Routledge, Taylor & Francis Group CY - Abingdon ER - TY - JOUR A1 - Nguyen, Hiep N. A1 - Lee, Hyeunjoo A1 - Audörsch, Stephan A1 - Reznichenko, Alexander L. A1 - Nawara-Hultzsch, Agnieszka J. A1 - Schmidt, Bernd A1 - Hultzsch, Kai C. T1 - Asymmetric Intra- and Intermolecular Hydroamination Catalyzed by 3,3′-Bis(trisarylsilyl)- and 3,3′-Bis(arylalkylsilyl)-Substituted Binaphtholate Rare-Earth-Metal Complexes JF - Organometallics N2 - The series of novel 3,3′-bis(trisarylsilyl)- and 3,3′-bis(arylalkylsilyl)-substituted binaphtholate rare-earth-metal complexes 2a–i (SiR3 = Si(o-biphenylene)Ph (a), SiCyPh2 (b), Si-t-BuPh2 (c), Si(i-Pr)3 (d), SiCy2Ph (e), Si(2-tolyl)Ph2 (f), Si(4-t-Bu-C6H4)3 (g), Si(4-MeO-C6H4)Ph2 (h), SiBnPh2 (i)) have been prepared via arene elimination from [Ln(o-C6H4CH2NMe2)3] (Ln = Y, Lu) and the corresponding 3,3′-bis(silyl)-substituted binaphthol. The complexes exhibit high catalytic activity in the hydroamination/cyclization of aminoalkenes, with activities exceeding 1000 h–1 for (R)-2f-Ln, (R)-2g-Ln, and (R)-2h-Ln in the cyclization of 2,2-diphenylpent-4-enylamine (3a) at 25 °C, while the rigid dibenzosilole-substituted complexes (R)-2a-Ln and the triisopropylsilyl-substituted complexes (R)-2d-Ln exhibited the lowest activity in the range of 150–270 h–1. Catalysts (R)-2b-Lu, (R)-2c-Lu, (R)-2f-Lu, and (R)-2i-Lu provide the highest selectivities for the majority of the substrates, while the yttrium congeners are usually less selective. The highest enantioselectivities of 96% ee were observed using (R)-2a-Lu and (R)-2c-Lu in the cyclization of (4E)-2,2,5-triphenylpent-4-enylamine (9). The reactions show apparently zero-order rate dependence on substrate concentration and first-order rate dependence on catalyst concentration, with some reactions exhibiting a slightly accelerated rate at high conversion due to a shift in the equilibrium between a less active, higher coordinate catalyst species in favor of a more active, lower coordinate species as a result of weaker binding of the hydroamination product in comparison to the aminoalkene substrate. The shift in equilibrium from the higher to the lower coordinate species is also entropically favored at elevated temperatures, which results in an unusual increase in selectivity in the cyclization of 2,2-dimethylpent-4-enylamine (3d), presumably due to a higher selectivity of the lower coordinate catalyst species. All binaphtholate yttrium complexes, except (R)-2a-Y, are catalytically active in the intermolecular hydroamination of benzylamines with terminal alkenes. The highest selectivity of 66% ee was observed for the reaction of benzylamine with 4-phenyl-1-butene using (R)-2h-Y at 110 °C. Y1 - 2018 U6 - https://doi.org/10.1021/acs.organomet.8b00510 SN - 0276-7333 SN - 1520-6041 VL - 37 IS - 23 SP - 4358 EP - 4379 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Karras, Manfred A1 - Holec, Jan A1 - Bednarova, Lucie A1 - Pohl, Radek A1 - Schmidt, Bernd A1 - Stara, Irena G. A1 - Stary, Ivo T1 - Asymmetric Synthesis of Nonracemic 2-Amino[6]helicenes and Their Self-Assembly into Langmuir Films JF - The journal of organic chemistry N2 - Alternative ways of preparing nonracemic 2-amino[6]helicene derivatives were explored. The enantioselective [2 + 2 + 2] cycloisomerization of a nonchiral triyne under Ni(cod)(2)/(R)-QUINAP catalysis delivered the enantioenriched (+)-(P)-2-aminodibenzo[6]helicene derivative in 67% ee. An ultimate "point-to-helical" chirality transfer was observed in the cyclization of enantiopure triynes mediated by Ni(CO)(2)(PPh3)(2) affording (-)-(M)- or (+)-(P)-7,8-bis(p-tolyl)hexahelicen-2-amine in >99% ee as well as its benzoderivative in >99% ee. The latter mode of stereocontrol was inefficient for a 2-aminobenzo[6]helicene congener with an embedded five-membered ring. The rac-, (-)-(M)-, and (+)-(P)-7,8-bis(p-tolyl)hexahelicen-2-amines formed Langmuir monolayers at the air water interface featuring practically identical surface pressure vs mean molecular area isotherms. The corresponding Langmuir-Blodgett films on quartz or silicon substrates were characterized by UV vis/ECD spectroscopy and AFM microscopy, respectively. Y1 - 2018 U6 - https://doi.org/10.1021/acs.joc.8b00538 SN - 0022-3263 SN - 1520-6904 VL - 83 IS - 10 SP - 5523 EP - 5538 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Chen, Ye A1 - Song, Qilei A1 - Zhao, Junpeng A1 - Gong, Xiangjun A1 - Schlaad, Helmut A1 - Zhang, Guangzhao T1 - Betulin-Constituted multiblock amphiphiles for broad-spectrum protein resistance JF - ACS applied materials & interfaces N2 - Multiblock-like amphiphilic polyurethanes constituted by poly(ethylene oxide) and biosourced betulin are designed for antifouling and synthesized by a convenient organocatalytic route comprising tandem chain-growth and step-growth polymerizations. The doping density of betulin (D-B) in the polymer chain structure is readily varied by a mixed-initiator strategy. The spin-coated polymer films exhibit unique nanophase separation and protein resistance behaviors. Higher D-B leads to enhanced surface hydrophobicity and, unexpectedly, improved protein resistance. It is found that the surface holds molecular-level heterogeneity when D-B is substantially high due to restricted phase separation; therefore, broad-spectrum protein resistance is achieved despite considerable surface hydrophobicity. As D-B decreases, the distance between adjacent betulin units increases so that hydrophobic nanodomains are formed, which provide enough landing areas for relatively small-sized proteins to adsorb on the surface. KW - amphiphilic surface KW - antifouling KW - multiblock copolymer KW - organocatalytic polymerization KW - renewable resource Y1 - 2018 U6 - https://doi.org/10.1021/acsami.7b16255 SN - 1944-8244 VL - 10 IS - 7 SP - 6593 EP - 6600 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Schmidt, Bernd A1 - Petersen, Monib H. A1 - Braun, Diana T1 - Bidirectional Synthesis of 6-Acetoxy-5-hexadecanolide, the Mosquito Oviposition Pheromone of Culex quinquefasciatus, from a C-2-Symmetric Building Block Using Olefin Metathesis Reactions JF - The journal of organic chemistry N2 - (5R,6S)-6-Acetoxy-5-hexadecanolide (MOP) is the oviposition pheromone of the mosquito Cx. quinquefasciatus, a vector of pathogens causing a variety of tropical diseases. We describe and evaluate herein three syntheses of MOP starting from mannitol-derived (3R,4R)-hexa-1,5-diene-3,4-diol. This C-2-symmetric building block is elaborated through bidirectional olefin metathesis reactions into 6-epi-MOP, which was converted into MOP via Mitsunobu inversion. The shortest of the three routes makes use of two sequential cross-metathesis reactions and an assisted tandem catalytic olefin reduction, induced by an in situ conversion of a Ru-carbene to a Ru-hydride. Y1 - 2018 U6 - https://doi.org/10.1021/acs.joc.7b02944 SN - 0022-3263 VL - 83 IS - 3 SP - 1627 EP - 1633 PB - American Chemical Society CY - Washington ER - TY - THES A1 - Heinke, David T1 - Biokompatible superparamagnetische Nanopartikel BT - Entwicklung von Nanopartikeln für den Einsatz als in-vivo-Diagnostikum insbesondere im Magnetic Particle Imaging N2 - Magnetische Eisenoxidnanopartikel werden bereits seit geraumer Zeit erfolgreich als MRT-Kontrastmittel in der klinischen Bildgebung eingesetzt. Durch Optimierung der magnetischen Eigenschaften der Nanopartikel kann die Aussagekraft von MR-Aufnahmen verbessert und somit der diagnostische Wert einer MR-Anwendung weiter erhöht werden. Neben der Verbesserung bestehender Verfahren wird die bildgebende Diagnostik ebenso durch die Entwicklung neuer Verfahren, wie dem Magnetic Particle Imaging, vorangetrieben. Da hierbei das Messsignal von den magnetischen Nanopartikeln selbst erzeugt wird, birgt das MPI einen enormen Vorteil hinsichtlich der Sensitivität bei gleichzeitig hoher zeitlicher und räumlicher Auflösung. Da es aktuell jedoch keinen kommerziell vertriebenen in vivo-tauglichen MPI-Tracer gibt, besteht ein dringender Bedarf an geeigneten innovativen Tracermaterialien. Daraus resultierte die Motivation dieser Arbeit biokompatible und superparamagnetische Eisenoxidnanopartikel für den Einsatz als in vivo-Diagnostikum insbesondere im Magnetic Particle Imaging zu entwickeln. Auch wenn der Fokus auf der Tracerentwicklung für das MPI lag, wurde ebenso die MR-Performance bewertet, da geeignete Partikel somit alternativ oder zusätzlich als MR-Kontrastmittel mit verbesserten Kontrasteigenschaften eingesetzt werden könnten. Die Synthese der Eisenoxidnanopartikel erfolgte über die partielle Oxidation von gefälltem Eisen(II)-hydroxid und Green Rust sowie eine diffusionskontrollierte Kopräzipitation in einem Hydrogel. Mit der partiellen Oxidation von Eisen(II)-hydroxid und Green Rust konnten erfolgreich biokompatible und über lange Zeit stabile Eisenoxidnanopartikel synthetisiert werden. Zudem wurden geeignete Methoden zur Formulierung und Sterilisierung etabliert, wodurch zahlreiche Voraussetzungen für eine Anwendung als in vivo-Diagnostikum geschaffen wurden. Weiterhin ist auf Grundlage der MPS-Performance eine hervorragende Eignung dieser Partikel als MPI-Tracer zu erwarten, wodurch die Weiterentwicklung der MPI-Technologie maßgeblich vorangetrieben werden könnte. Die Bestimmung der NMR-Relaxivitäten sowie ein initialer in vivo-Versuch zeigten zudem das große Potential der formulierten Nanopartikelsuspensionen als MRT-Kontrastmittel. Die Modifizierung der Partikeloberfläche ermöglicht ferner die Herstellung zielgerichteter Nanopartikel sowie die Markierung von Zellen, wodurch das mögliche Anwendungsspektrum maßgeblich erweitert wurde. Im zweiten Teil wurden Partikel durch eine diffusionskontrollierte Kopräzipitation im Hydrogel, wobei es sich um eine bioinspirierte Modifikation der klassischen Kopräzipitation handelt, synthetisiert, wodurch Partikel mit einer durchschnittlichen Kristallitgröße von 24 nm generiert werden konnten. Die Bestimmung der MPS- und MR-Performance elektrostatisch stabilisierter Partikel ergab vielversprechende Resultate. In Vorbereitung auf die Entwicklung eines in vivo-Diagnostikums wurden die Partikel anschließend erfolgreich sterisch stabilisiert, wodurch der kolloidale Zustand in MilliQ-Wasser über lange Zeit aufrechterhalten werden konnte. Durch Zentrifugation konnten die Partikel zudem erfolgreich in verschiedene Größenfraktionen aufgetrennt werden. Dies ermöglichte die Bestimmung der idealen Aggregatgröße dieses Partikelsystems in Bezug auf die MPS-Performance. N2 - Magnetic nanoparticles have long been successfully implemented in the clinic as contrast agents for magnetic resonance imaging (MRI). Through optimization of the nanoparticles’ magnetic properties, an improvement in the resulting diagnostic images can be achieved, which in turn increases the diagnostic value of the MRI procedure. The advancement of diagnostic imaging is brought about not only through the improvement of established diagnostic techniques, but also through the development of new methodologies such as Magnetic Particle Imaging (MPI). In MPI, the measured signal arises directly from the magnetic particles and, thus, the technique holds great promise in terms of sensitivity and spatial resolution. Since there are currently no commercially available MPI tracers for in vivo use, the development of optimal tracer materials that are biocompatible and, thus, suitable for in vivo application, is becoming increasingly important. Therefore, the aim of this work was to develop biocompatible superparamagnetic iron oxide nanoparticles for application as an in vivo diagnostic agent in particular for MPI. Even though the focus lay on the development of an MPI tracer, the MR performance of the generated magnetic nanoparticles was also addressed, since such particles can be also be used as an MRI contrast agent with improved contrast efficacy. Synthesis of the superparamagnetic iron oxide nanoparticles was performed either via partial oxidation of precipitated iron (II) hydroxide and green rust or through a diffusion-controlled co-precipitation reaction in a hydrogel. The partial oxidation synthetic route gave rise to biocompatible and colloidally stable iron oxide nanoparticles. Furthermore, suitable methods for the formulation and sterilization of these particles were developed, enabling many of the prerequisites for successful in vivo application to be addressed. The resulting outstanding magnetic particle spectra (MPS) performance of the synthesized nanoparticles enables their suitability as an effective MPI tracer, assisting the advancement of the MPI technology. Moreover, the MR relaxivity values of the particles as well as results obtained from a preliminary in vivo MRI experiment revealed the high potential of the formulated nanoparticle suspensions for application as MRI contrast agents. In addition, chemical modification of the particle surface was performed, which enables the fabrication of target-specific nanoparticles as well as magnetic labeling of certain cell types e.g. stem cells. Nanoparticle synthesis via a diffusion-controlled co-precipitation strategy in a hydrogel, which is a bioinspired modification of the classical co-precipitation reaction, resulted in particles with a mean crystal diameter of 24 nm. Measurement of the MPS and MR performances of such electrostatically-stabilized particles revealed promising results. So as to promote the development of these particles for use as in vivo diagnostic agents, the particles were sterically stabilized and were found to be colloidally stable on the long-term in aqueous solution. Through centrifugation, the particles were successfully separated in batches of varying mean particle sizes, allowing for the determination of the ideal size of this particle system in terms of the MPS performance. KW - Magnetic Particle Imaging KW - Magnetresonanztomograpgie KW - magnetic resonance imaging KW - Eisenoxidnanopartikel Y1 - 2018 SN - 978-3-945954-45-4 PB - Infinite Science Publishing CY - Lübeck ER - TY - JOUR A1 - Turrini, Nikolaus G. A1 - Kroepfl, Nina A1 - Jensen, Kenneth Bendix A1 - Reiter, Tamara C. A1 - Francesconi, Kevin A. A1 - Schwerdtle, Tanja A1 - Kroutil, Wolfgang A1 - Kuehnelt, Doris T1 - Biosynthesis and isolation of selenoneine from genetically modified fission yeast JF - Metallomics : integrated biometal science N2 - Selenoneine, a naturally occurring form of selenium, is the selenium analogue of ergothioneine, a sulfur species with health relevance not only as a purported antioxidant but likely also beyond. Selenoneine has been speculated to exhibit similar effects. To study selenoneine's health properties as well as its metabolic transformation, the pure compound is required. Chemical synthesis of selenoneine, however, is challenging and biosynthetic approaches have been sought. We herein report the biosynthesis and isolation of selenoneine from genetically modified fission yeast Schizosaccharomyces pombe grown in a medium containing sodium selenate. After cell lysis and extraction with methanol, selenoneine was purified by three consecutive preparative reversed-phase HPLC steps. The product obtained at the mg level was characterised by high resolution mass spectrometry, NMR and HPLC/ICPMS. Biosynthesis was found to be a promising alternative to chemical synthesis, and should be suitable for upscaling to produce higher amounts of this important selenium species in the future. Y1 - 2018 U6 - https://doi.org/10.1039/c8mt00200b SN - 1756-5901 SN - 1756-591X VL - 10 IS - 10 SP - 1532 EP - 1538 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Krüger, Stefanie A1 - Schwarze, Michael A1 - Baumann, Otto A1 - Günter, Christina A1 - Bruns, Michael A1 - Kübel, Christian A1 - Szabo, Dorothee Vinga A1 - Meinusch, Rafael A1 - Bermudez, Veronica de Zea A1 - Taubert, Andreas T1 - Bombyx mori silk/titania/gold hybrid materials for photocatalytic water splitting BT - combining renewable raw materials with clean fuels JF - Beilstein journal of nanotechnology N2 - The synthesis, structure, and photocatalytic water splitting performance of two new titania (TiO2)/gold(Au)/Bombyx mori silk hybrid materials are reported. All materials are monoliths with diameters of up to ca. 4.5 cm. The materials are macroscopically homogeneous and porous with surface areas between 170 and 210 m(2)/g. The diameter of the TiO2 nanoparticles (NPs) - mainly anatase with a minor fraction of brookite - and the Au NPs are on the order of 5 and 7-18 nm, respectively. Addition of poly(ethylene oxide) to the reaction mixture enables pore size tuning, thus providing access to different materials with different photocatalytic activities. Water splitting experiments using a sunlight simulator and a Xe lamp show that the new hybrid materials are effective water splitting catalysts and produce up to 30 mmol of hydrogen per 24 h. Overall the article demonstrates that the combination of a renewable and robust scaffold such as B. mori silk with a photoactive material provides a promising approach to new monolithic photocatalysts that can easily be recycled and show great potential for application in lightweight devices for green fuel production. KW - Bombyx mori silk KW - gold KW - photocatalytic water splitting KW - titania Y1 - 2018 U6 - https://doi.org/10.3762/bjnano.9.21 SN - 2190-4286 VL - 9 SP - 187 EP - 204 PB - Beilstein-Institut zur Förderung der Chemischen Wissenschaften CY - Frankfurt, Main ER -