TY - JOUR A1 - Cepakova, Zuzana A1 - Hrouzek, Pavel A1 - Ziskova, Eva A1 - Nuyanzina-Boldareva, Ekaterina A1 - Sorf, Michal A1 - Kozlikova-Zapomelova, Eliska A1 - Salka, Ivette A1 - Grossart, Hans-Peter A1 - Koblizek, Michal T1 - High turnover rates of aerobic anoxygenic phototrophs in European freshwater lakes JF - Environmental microbiology N2 - Aerobic Anoxygenic Phototrophic (AAP) bacteria are bacteriochlorophyll (BChl) a -containing organisms which use light energy to supplement their predominantly heterotrophic metabolism. Here, we investigated mortality and growth rates of AAP bacteria in three different freshwater lakes in Central Europe: the mountain lake Plesne, the oligo-mesotrophic Lake Stechlin and the forest pond Huntov. The mortality of AAP bacteria was estimated from diel changes of BChl a fluorescence. Net and gross growth rates were calculated from the increases in AAP cell numbers. The gross growth rates of AAP bacteria ranged from 0.38 to 5.6 d(-1), with the highest values observed during summer months. Simultaneously, the rapidly growing AAP cells have to cope with an intense grazing pressure by both zooplankton and protists. The presented results document that during the day, gross growth usually surpased mortality. Our results indicate that AAP bacteria utilize light energy under natural conditions to maintain rapid growth rates, which are balanced by a generally intense grazing pressure. Y1 - 2016 U6 - https://doi.org/10.1111/1462-2920.13475 SN - 1462-2912 SN - 1462-2920 VL - 18 SP - 5063 EP - 5071 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Cazelles, R. A1 - Lalaoui, N. A1 - Hartmann, Tobias A1 - Leimkühler, Silke A1 - Wollenberger, Ursula A1 - Antonietti, Markus A1 - Cosnier, S. T1 - Ready to use bioinformatics analysis as a tool to predict immobilisation strategies for protein direct electron transfer (DET) JF - Polymer : the international journal for the science and technology of polymers KW - Bioinformatic KW - Bioelectrocatalysis KW - Electron transfer KW - Dehydrogenase KW - Nicotinamide Y1 - 2016 U6 - https://doi.org/10.1016/j.bios.2016.04.078 SN - 0956-5663 SN - 1873-4235 VL - 85 SP - 90 EP - 95 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Bull, James K. A1 - Heurich, Marco A1 - Saveljev, Alexander P. A1 - Schmidt, Krzysztof A1 - Fickel, Jörns A1 - Förster, Daniel W. T1 - The effect of reintroductions on the genetic variability in Eurasian lynx populations: the cases of Bohemian-Bavarian and Vosges-Palatinian populations JF - Conservation genetics KW - Lynx KW - Microsatellites KW - Population history KW - Reintroduction Y1 - 2016 U6 - https://doi.org/10.1007/s10592-016-0839-0 SN - 1566-0621 SN - 1572-9737 VL - 17 SP - 1229 EP - 1234 PB - Springer CY - Dordrecht ER - TY - THES A1 - Brzezinka, Magdalena T1 - Investigation of novel proteins and polysaccharides associated with coccoliths of Emiliania huxleyi Y1 - 2016 ER - TY - JOUR A1 - Brzezinka, Krzysztof A1 - Altmann, Simone A1 - Czesnick, Hjördis A1 - Nicolas, Philippe A1 - Gorka, Michal A1 - Benke, Eileen A1 - Kabelitz, Tina A1 - Jähne, Felix A1 - Graf, Alexander A1 - Kappel, Christian A1 - Bäurle, Isabel T1 - Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling JF - eLife N2 - Plants as sessile organisms can adapt to environmental stress to mitigate its adverse effects. As part of such adaptation they maintain an active memory of heat stress for several days that promotes a more efficient response to recurring stress. We show that this heat stress memory requires the activity of the FORGETTER1 (FGT1) locus, with fgt1 mutants displaying reduced maintenance of heat-induced gene expression. FGT1 encodes the Arabidopsis thaliana orthologue of Strawberry notch (Sno), and the protein globally associates with the promoter regions of actively expressed genes in a heat-dependent fashion. FGT1 interacts with chromatin remodelers of the SWI/ SNF and ISWI families, which also display reduced heat stress memory. Genomic targets of the BRM remodeler overlap significantly with FGT1 targets. Accordingly, nucleosome dynamics at loci with altered maintenance of heat-induced expression are affected in fgt1. Together, our results suggest that by modulating nucleosome occupancy, FGT1 mediates stress-induced chromatin memory. Y1 - 2016 U6 - https://doi.org/10.7554/eLife.17061 SN - 2050-084X VL - 5 PB - eLife Sciences Publications CY - Cambridge ER - TY - THES A1 - Brzezinka, Krzysztof T1 - Chromatin dynamics during heat stress memory in plants Y1 - 2016 ER - TY - THES A1 - Breuer, David T1 - The plant cytoskeleton as a transportation network T1 - Modellierung des pflanzliche Zytoskeletts als Transportnetzwerk N2 - The cytoskeleton is an essential component of living cells. It is composed of different types of protein filaments that form complex, dynamically rearranging, and interconnected networks. The cytoskeleton serves a multitude of cellular functions which further depend on the cell context. In animal cells, the cytoskeleton prominently shapes the cell's mechanical properties and movement. In plant cells, in contrast, the presence of a rigid cell wall as well as their larger sizes highlight the role of the cytoskeleton in long-distance intracellular transport. As it provides the basis for cell growth and biomass production, cytoskeletal transport in plant cells is of direct environmental and economical relevance. However, while knowledge about the molecular details of the cytoskeletal transport is growing rapidly, the organizational principles that shape these processes on a whole-cell level remain elusive. This thesis is devoted to the following question: How does the complex architecture of the plant cytoskeleton relate to its transport functionality? The answer requires a systems level perspective of plant cytoskeletal structure and transport. To this end, I combined state-of-the-art confocal microscopy, quantitative digital image analysis, and mathematically powerful, intuitively accessible graph-theoretical approaches. This thesis summarizes five of my publications that shed light on the plant cytoskeleton as a transportation network: (1) I developed network-based frameworks for accurate, automated quantification of cytoskeletal structures, applicable in, e.g., genetic or chemical screens; (2) I showed that the actin cytoskeleton displays properties of efficient transport networks, hinting at its biological design principles; (3) Using multi-objective optimization, I demonstrated that different plant cell types sustain cytoskeletal networks with cell-type specific and near-optimal organization; (4) By investigating actual transport of organelles through the cell, I showed that properties of the actin cytoskeleton are predictive of organelle flow and provided quantitative evidence for a coordination of transport at a cellular level; (5) I devised a robust, optimization-based method to identify individual cytoskeletal filaments from a given network representation, allowing the investigation of single filament properties in the network context. The developed methods were made publicly available as open-source software tools. Altogether, my findings and proposed frameworks provide quantitative, system-level insights into intracellular transport in living cells. Despite my focus on the plant cytoskeleton, the established combination of experimental and theoretical approaches is readily applicable to different organisms. Despite the necessity of detailed molecular studies, only a complementary, systemic perspective, as presented here, enables both understanding of cytoskeletal function in its evolutionary context as well as its future technological control and utilization. N2 - Das Zytoskelett ist ein notwendiger Bestandteil lebender Zellen. Es besteht aus verschiedenen Arten von Proteinfilamenten, die ihrerseits komplexe, sich dynamisch reorganisierende und miteinander verknüpfte Netzwerke bilden. Das Zytoskelett erfüllt eine Vielzahl von Funktionen in der Zelle. In Tierzellen bestimmt das Aktin-Zytoskelett maßgeblich die mechanischen Zelleigenschaften und die Zellbewegung. In Pflanzenzellen hingegen kommt dem Aktin-Zytoskelett eine besondere Bedeutung in intrazellulären Transportprozessen zu, bedingt insbesondere durch die starre pflanzliche Zellwand sowie die Zellgröße. Als wesentlicher Faktor für Zellwachstum und somit auch die Produktion von Biomasse, ist Zytoskelett-basierter Transport daher von unmittelbarer ökologischer und ökonomischer Bedeutung. Während das Wissen über die molekularen Grundlagen Zytoskelett-basierter Transportprozesse beständig wächst, sind die zugrunde liegenden Prinzipien zellweiter Organisation bisher weitgehend unbekannt. Diese Dissertation widmet sich daher folgender Frage: Wie hängt die komplexe Architektur des pflanzlichen Zytoskeletts mit seiner intrazellulären Transportfunktion zusammen? Eine Antwort auf diese Frage erfordert eine systemische Perspektive auf Zytoskelettstruktur und -transport. Zu diesem Zweck habe ich Mikroskopiedaten mit hoher raumzeitlicher Auflösung sowie Computer-gestützte Bildanalysen und mathematische Ansätzen der Graphen- und Netzwerktheorie kombiniert. Die vorliegende Dissertation umfasst fünf meiner Publikationen, die sich einem systemischen Verständnis des pflanzlichen Zytoskeletts als Transportnetzwerk widmen: (1) Dafür habe ich Bilddaten-basierte Netzwerkmodelle entwickelt, die eine exakte und automatisierte Quantifizierung der Architektur des Zytoskeletts ermöglichen. Diese Quantifizierung kann beispielsweise in genetischen oder chemischen Versuchen genutzt werden und für eine weitere Erforschung der genetischen Grundlagen und möglicher molekularer Interaktionspartner des Zytoskeletts hilfreich sein; (2) Ich habe nachgewiesen, dass das pflanzliche Aktin-Zytoskelett Eigenschaften effizienter Transportnetzwerk aufweist und Hinweise auf seine evolutionären Organisationsprinzipien liefert; (3) Durch die mathematische Optimierung von Transportnetzwerken konnte ich zeigen, dass unterschiedliche Pflanzenzelltypen spezifische und optimierte Organisationsstrukturen des Aktin-Zytoskeletts aufweisen; (4) Durch quantitative Analyse des Transports von Organellen in Pflanzenzellen habe ich nachgewiesen, dass sich Transportmuster ausgehend von der Struktur des Aktin-Zytoskeletts vorhersagen lassen. Dabei spielen sowohl die Organisation des Zytoskeletts auf Zellebene als auch seine Geometrie eine zentrale Rolle. (5) Schließlich habe ich eine robuste, optimierungs-basierte Methode entwickelt, die es erlaubt, individuelle Filamente eines Aktin-Netzwerks zu identifizieren. Dadurch ist es möglich, die Eigenschaften einzelner Zytoskelettfilamente im zellulären Kontext zu untersuchen. Die im Zuge dieser Dissertation entwickelten Methoden wurden frei und quelloffen als Werkzeuge zur Beantwortung verwandter Fragestellung zugänglich gemacht. Insgesamt liefern die hier präsentierten Ergebnisse und entwickelten Methoden quantitative, systemische Einsichten in die Transportfunktion des Zytoskeletts. Die hier etablierte Kombination von experimentellen und theoretischen Ansätzen kann, trotz des Fokusses auf das pflanzliche Zytoskelett, direkt auf andere Organismen angewendet werden. Als Ergänzung molekularer Studien bildet ein systemischer Blickwinkel, wie er hier entwickelt wurde, die Grundlage für ein Verständnis sowohl des evolutionären Kontextes als auch zukünftiger Kontroll- und Nutzungsmöglichkeiten des pflanzlichen Zytoskeletts. KW - systems biology KW - mathematical modeling KW - cytoskeleton KW - plant science KW - graph theory KW - image analysis KW - Systembiologie KW - mathematische Modellierung KW - Zytoskelett KW - Zellbiologie KW - Graphtheorie KW - Bildanalyse Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-93583 ER - TY - JOUR A1 - Brentrup, Jennifer A. A1 - Williamson, Craig E. A1 - Colom-Montero, William A1 - Eckert, Werner A1 - de Eyto, Elvira A1 - Großart, Hans-Peter A1 - Huot, Yannick A1 - Isles, Peter D. F. A1 - Knoll, Lesley B. A1 - Leach, Taylor H. A1 - McBride, Chris G. A1 - Pierson, Don A1 - Pomati, Francesco A1 - Read, Jordan S. A1 - Rose, Kevin C. A1 - Samal, Nihar R. A1 - Staehr, Peter A. A1 - Winslow, Luke A. T1 - The potential of high-frequency profiling to assess vertical and seasonal patterns of phytoplankton dynamics in lakes: an extension of the Plankton Ecology Group (PEG) model JF - Inland waters : journal of the International Society of Limnology N2 - The use of high-frequency sensors on profiling buoys to investigate physical, chemical, and biological processes in lakes is increasing rapidly. Profiling buoys with automated winches and sensors that collect high-frequency chlorophyll fluorescence (ChlF) profiles in 11 lakes in the Global Lake Ecological Observatory Network (GLEON) allowed the study of the vertical and temporal distribution of ChlF, including the formation of subsurface chlorophyll maxima (SSCM). The effectiveness of 3 methods for sampling phytoplankton distributions in lakes, including (1) manual profiles, (2) single-depth buoys, and (3) profiling buoys were assessed. High-frequency ChlF surface data and profiles were compared to predictions from the Plankton Ecology Group (PEG) model. The depth-integrated ChlF dynamics measured by the profiling buoy data revealed a greater complexity that neither conventional sampling nor the generalized PEG model captured. Conventional sampling techniques would have missed SSCM in 7 of 11 study lakes. Although surface-only ChlF data underestimated average water column ChlF, at times by nearly 2-fold in 4 of the lakes, overall there was a remarkable similarity between surface and mean water column data. Contrary to the PEG model’s proposed negligible role for physical control of phytoplankton during the growing season, thermal structure and light availability were closely associated with ChlF seasonal depth distribution. Thus, an extension of the PEG model is proposed, with a new conceptual framework that explicitly includes physical metrics to better predict SSCM formation in lakes and highlight when profiling buoys are especially informative. KW - chlorophyll fluorescence KW - Global Lake Ecological Observatory Network (GLEON) KW - high-frequency sensors KW - PEG model KW - phytoplankton KW - profiling buoys KW - subsurface chlorophyll maximum Y1 - 2016 U6 - https://doi.org/10.5268/IW-6.4.890 SN - 2044-2041 SN - 2044-205X VL - 6 SP - 565 EP - 580 PB - Freshwater Biological Association CY - Ambleside ER - TY - JOUR A1 - Borgia, Alessandro A1 - Zheng, Wenwei A1 - Buholzer, Karin A1 - Borgia, Madeleine B. A1 - Schüler, Anja A1 - Hofmann, Hagen A1 - Soranno, Andrea A1 - Nettels, Daniel A1 - Gast, Klaus A1 - Grishaev, Alexander A1 - Best, Robert B. A1 - Schuler, Benjamin T1 - Consistent View of Polypeptide Chain Expansion in Chemical Denaturants from Multiple Experimental Methods JF - Journal of the American Chemical Society N2 - There has been a long-standing controversy regarding the effect of chemical denaturants on the dimensions of unfolded and intrinsically disordered proteins: A wide range of experimental techniques suggest that polypeptide chains expand with increasing denaturant concentration, but several studies using small-angle X-ray scattering (SAXS) have reported no: such increase of the radius of gyration (R-g). This inconsistency challenges our current understanding of the mechanism of chemical denaturants, which are widely employed to investigate protein folding and stability. Here, we use a combination Of single-molecule Forster resonance energy transfer (FRET), SAXS, dynamic light scattering (DLS), and two-focus fluorescence correlation spectroscopy (2f-FCS) to characterize the denaturant dependence of the unfolded state of the spectrin domain R17 and the intrinsically disordered protein ACTR in two different denaturants. Standard analysis of the primary data clearly indicates an expansion of the unfolded state with increasing denaturant concentration irrespective of the protein, denaturant, or experimental method used. This is the first case in which SAXS and FRET have yielded even qualitatively consistent results regarding expansion in denaturant when applied to the same proteins. To more directly illustrate this self-consistency, we used both SAXS and FRET data in a Bayesian procedure to refine structural ensembles representative of the observed unfolded state. This analysis demonstrates that both of these experimental probes are compatible with a common ensemble of protein configurations for each denaturant concentration. Furthermore, the resulting ensembles reproduce the trend of increasing hydrodynamic radius, with denaturant concentration obtained by 2f-FCS,and DLS. We were thus able to reconcile the results from all four experimental techniques quantitatively, to obtain a comprehensive structural picture of denaturant;induced unfolded state expansion, and to identify the Most likely sources of earlier discrepancies. Y1 - 2016 U6 - https://doi.org/10.1021/jacs.6b05917 SN - 0002-7863 VL - 138 SP - 11714 EP - 11726 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Bookers, Anke A1 - Jacob, Louis A1 - Bohlken, Jens A1 - Rapp, Michael A. A1 - Kostev, Karel T1 - Persistence with antipsychotics in dementia patients in Germany JF - International journal of clinical pharmacology and therapeutics N2 - Background/Aims: To analyze the duration of treatment with antipsychotics in German dementia patients. Methods: This study included patients aged 60 years and over with dementia who received a first-time antipsychotic prescription by psychiatrists between 2009 and 2013. The main outcome measure was the treatment rate for more than 6 months following the index date. Results: A total of 12,979 patients with dementia (mean age 82 years, 52.1% living in nursing homes) were included. After 2 years of follow-up, 54.8%, 57.2%, 61.1%, and 65.4% of patients aged 60 - 69, 70 - 79, 80 - 89, and 90 - 99 years, respectively, received antipsychotic prescriptions. 63.9% of subjects living in nursing homes and 55.0% of subjects living at home also continued their treatment (p-value < 0.001). Conclusion: The percentage of dementia patients treated with anti psychotics is very high. KW - persistence KW - antipsychotics KW - dementia Y1 - 2016 U6 - https://doi.org/10.5414/CP202631 SN - 0946-1965 VL - 54 SP - 835 EP - 840 PB - Dustri-Verlag Dr. Karl Feistle CY - Deisenhofen-München ER - TY - THES A1 - Bolger, Anthony T1 - Sequencing the Genome of the stress-tolerant wild tomato Solanum pennellii and Novel Algorithms motivated thereby Y1 - 2016 ER - TY - JOUR A1 - Binzer, Amrei A1 - Guill, Christian A1 - Rall, Björn C. A1 - Brose, Ulrich T1 - Interactive effects of warming, eutrophication and size structure: impacts on biodiversity and food-web structure JF - Global change biology N2 - Warming and eutrophication are two of the most important global change stressors for natural ecosystems, but their interaction is poorly understood. We used a dynamic model of complex, size-structured food webs to assess interactive effects on diversity and network structure. We found antagonistic impacts: Warming increases diversity in eutrophic systems and decreases it in oligotrophic systems. These effects interact with the community size structure: Communities of similarly sized species such as parasitoid-host systems are stabilized by warming and destabilized by eutrophication, whereas the diversity of size-structured predator-prey networks decreases strongly with warming, but decreases only weakly with eutrophication. Nonrandom extinction risks for generalists and specialists lead to higher connectance in networks without size structure and lower connectance in size-structured communities. Overall, our results unravel interactive impacts of warming and eutrophication and suggest that size structure may serve as an important proxy for predicting the community sensitivity to these global change stressors. KW - complex food webs KW - extinctions KW - generalists KW - global change KW - size structure KW - specialists Y1 - 2016 U6 - https://doi.org/10.1111/gcb.13086 SN - 1354-1013 SN - 1365-2486 VL - 22 SP - 220 EP - 227 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Bilton, Mark C. A1 - Metz, Johannes A1 - Tielboerger, Katja T1 - Climatic niche groups: A novel application of a common assumption predicting plant community response to climate change JF - Perspectives in plant ecology, evolution and systematics N2 - Defining species by their climatic niche is the simple and intuitive principle underlying Bioclimatic Envelope Model (BEM) predictions for climate change effects. However, these correlative models are often criticised for neglecting many ecological processes. Here, we apply the same niche principle to entire communities within a medium/long-term climate manipulation study, where ecological processes are inherently included. In a nine generation study in Israel, we manipulated rainfall (Drought -30%; Irrigation +30%; Control natural rainfall) at two sites which differ chiefly in rainfall quantity and variability. We analysed community responses to the manipulations by grouping species based on their climatic rainfall niche. These responses were compared to analyses based on single species, total densities, and commonly used taxonomic groupings. Climate Niche Groups yielded clear and consistent results: within communities, those species distributed in drier regions performed relatively better in the drought treatment, and those from wetter climates performed better when irrigated. In contrast, analyses based on other principles revealed little insight into community dynamics. Notably, most relationships were weaker at the drier, more variable site, suggesting that enhanced adaptation to variability may buffer climate change impacts. We provide robust experimental evidence that using climatic niches commonly applied in BEMs is a valid approach for eliciting community changes in response to climate change. However, we also argue that additional empirical information needs to be gathered using experiments in situ to correctly assess community vulnerability. Climatic Niche Groups used in this way, may therefore provide a powerful tool and directional testing framework to generalise and compare climate change impacts across habitats. (C) 2016 The Authors. Published by Elsevier GmbH. KW - Annual plant communities KW - Bioclimatic envelope modelling KW - Climate change manipulations KW - Experimental evidence KW - Plant functional groups KW - Rainfall niche Y1 - 2016 U6 - https://doi.org/10.1016/j.ppees.2016.02.006 SN - 1433-8319 VL - 19 SP - 61 EP - 69 PB - Elsevier CY - Jena ER - TY - JOUR A1 - Bergmann, Joana A1 - Verbruggen, Erik A1 - Heinze, Johannes A1 - Xiang, Dan A1 - Chen, Baodong A1 - Joshi, Jasmin Radha A1 - Rillig, Matthias C. T1 - The interplay between soil structure, roots, and microbiota as a determinant of plant-soil feedback JF - Ecology and evolution N2 - Plant-soil feedback (PSF) can influence plant community structure via changes in the soil microbiome. However, how these feedbacks depend on the soil environment remains poorly understood. We hypothesized that disintegrating a naturally aggregated soil may influence the outcome of PSF by affecting microbial communities. Furthermore, we expected plants to differentially interact with soil structure and the microbial communities due to varying root morphology. We carried out a feedback experiment with nine plant species (five forbs and four grasses) where the training phase consisted of aggregated versus disintegrated soil. In the feedback phase, a uniform soil was inoculated in a fully factorial design with soil washings from conspecific- versus heterospecific-trained soil that had been either disintegrated or aggregated. This way, the effects of prior soil structure on plant performance in terms of biomass production and allocation were examined. In the training phase, soil structure did not affect plant biomass. But on disintegrated soil, plants with lower specific root length (SRL) allocated more biomass aboveground. PSF in the feedback phase was negative overall. With training on disintegrated soil, conspecific feedback was positively correlated with SRL and significantly differed between grasses and forbs. Plants with higher SRL were likely able to easily explore the disintegrated soil with smaller pores, while plants with lower SRL invested in belowground biomass for soil exploration and seemed to be more susceptible to fungal pathogens. This suggests that plants with low SRL could be more limited by PSF on disintegrated soils of early successional stages. This study is the first to examine the influence of soil structure on PSF. Our results suggest that soil structure determines the outcome of PSF mediated by SRL. We recommend to further explore the effects of soil structure and propose to include root performance when working with PSF. KW - arbuscular mycorrhizal fungi KW - biomass allocation KW - plant functional traits KW - plant-soil (belowground) interactions KW - soil aggregation KW - specific root length KW - succession KW - water-stable aggregates Y1 - 2016 U6 - https://doi.org/10.1002/ece3.2456 SN - 2045-7758 VL - 6 SP - 7633 EP - 7644 PB - Wiley-Blackwell CY - Hoboken ER - TY - THES A1 - Beltran, Juan Camilo Moreno T1 - Characterization of the Clp protease complex and identification of putative substrates in N. tabacum Y1 - 2016 ER - TY - THES A1 - Beine-Golovchuk, Olga T1 - Characterization and functional complementation of the arabidopsis ribosomal Reil1 - 1Reil2-1 double mutant Y1 - 2016 ER - TY - JOUR A1 - Beenken, Ludwig A1 - Sainge, Moses N. A1 - Kocyan, Alexander T1 - Lactarius megalopterus, a new angiocarpous species from a tropical rainforest in Central Africa, shows adaptations to endozoochorous spore dispersal JF - Mycological progress : international journal of the German Mycological Society N2 - A new sequestrate Lactarius species was found in a humid evergreen tropical rainforest dominated by Fabaceae of the subfamily Caesalpinioideae in Cameroon, Central Africa. It is described here as new to science and is named Lactarius megalopterus, referring to its spore ornamentation of extraordinarily high wings. Anatomical characters and molecular systematic analyses confirm its relationship to Lactarius subgenus Plinthogali. Phylogenetic analyses based on two nuclear DNA regions revealed its close relationship to Lactarius angiocarpus, which is also an angiocarpous species from Zambia in Africa. Molecular studies have shown that tuber-like, sequestrate sporocarps evolved independently in several lineages of Basidiomycota. The findings of sequestrate fungi in tropical rainforests raise questions regarding the evolutionary benefit of enclosing the spore-producing hymenium. The enclosure of spore-producing tissue has often been associated with the protection of the delicate hymenium against desiccation in arid habitats or against frost in cold habitats. However, these cannot be the selective factors in warm and humid areas like the tropics. This controversy is exemplarily studied and discussed in the family of Russulaceae, especially in the genus Lactarius. Characters shown by the angiocarpous sporocarp of the new Lactarius, such as thick-walled statismospores, an aromatic smell and mild taste, can be interpreted as adaptations to endozoochorous spore dispersal by mammals. Therefore, here we prefer the alternative hypothesis that sequestrate sporocarps are the result of adaptation to endozoochorous spore dispersal. KW - Russulaceae KW - Lactarius subgenus Plinthogali KW - Mycophagy KW - Endozoochory syndrome KW - Cameroon Y1 - 2016 U6 - https://doi.org/10.1007/s11557-016-1198-4 SN - 1617-416X SN - 1861-8952 VL - 15 SP - 158 EP - 173 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Baylis, Alastair M. M. A1 - Kowalski, Gabriele Joanna A1 - Voigt, Christian C. A1 - Orben, Rachael A. A1 - Trillmich, Fritz A1 - Staniland, Iain J. A1 - Hoffman, Joseph I. T1 - Pup Vibrissae Stable Isotopes Reveal Geographic Differences in Adult Female Southern Sea Lion Habitat Use during Gestation JF - PLoS one N2 - Individuals within populations often differ substantially in habitat use, the ecological consequences of which can be far reaching. Stable isotope analysis provides a convenient and often cost effective means of indirectly assessing the habitat use of individuals that can yield valuable insights into the spatiotemporal distribution of foraging specialisations within a population. Here we use the stable isotope ratios of southern sea lion (Otaria flavescens) pup vibrissae at the Falkland Islands, in the South Atlantic, as a proxy for adult female habitat use during gestation. A previous study found that adult females from one breeding colony (Big Shag Island) foraged in two discrete habitats, inshore (coastal) or offshore (outer Patagonian Shelf). However, as this species breeds at over 70 sites around the Falkland Islands, it is unclear if this pattern is representative of the Falkland Islands as a whole. In order to characterize habitat use, we therefore assayed carbon (delta C-13) and nitrogen (delta N-15) ratios from 65 southern sea lion pup vibrissae, sampled across 19 breeding colonies at the Falkland Islands. Model-based clustering of pup isotope ratios identified three distinct clusters, representing adult females that foraged inshore, offshore, and a cluster best described as intermediate. A significant difference was found in the use of inshore and offshore habitats between West and East Falkland and between the two colonies with the largest sample sizes, both of which are located in East Falkland. However, habitat use was unrelated to the proximity of breeding colonies to the Patagonian Shelf, a region associated with enhanced biological productivity. Our study thus points towards other factors, such as local oceanography and its influence on resource distribution, playing a prominent role in inshore and offshore habitat use. Y1 - 2016 U6 - https://doi.org/10.1371/journal.pone.0157394 SN - 1932-6203 VL - 11 SP - 1824 EP - 1835 PB - PLoS CY - San Fransisco ER - TY - GEN A1 - Batsios, Petros A1 - Ren, Xiang A1 - Baumann, Otto A1 - Larochelle, Denis A. A1 - Gräf, Ralph T1 - Src1 is a Protein of the Inner Nuclear Membrane Interacting with the Dictyostelium Lamin NE81 N2 - The nuclear envelope (NE) consists of the outer and inner nuclear membrane (INM), whereby the latter is bound to the nuclear lamina. Src1 is a Dictyostelium homologue of the helix-extension-helix family of proteins, which also includes the human lamin-binding protein MAN1. Both endogenous Src1 and GFP-Src1 are localized to the NE during the entire cell cycle. Immuno-electron microscopy and light microscopy after differential detergent treatment indicated that Src1 resides in the INM. FRAP experiments with GFP-Src1 cells suggested that at least a fraction of the protein could be stably engaged in forming the nuclear lamina together with the Dictyostelium lamin NE81. Both a BioID proximity assay and mis-localization of soluble, truncated mRFP-Src1 at cytosolic clusters consisting of an intentionally mis-localized mutant of GFP-NE81 confirmed an interaction of Src1 and NE81. Expression GFP-Src11–646, a fragment C-terminally truncated after the first transmembrane domain, disrupted interaction of nuclear membranes with the nuclear lamina, as cells formed protrusions of the NE that were dependent on cytoskeletal pulling forces. Protrusions were dependent on intact microtubules but not actin filaments. Our results indicate that Src1 is required for integrity of the NE and highlight Dictyostelium as a promising model for the evolution of nuclear architecture. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 263 KW - Dictyostelium KW - HeH-protein KW - LEM-domain protein KW - lamin KW - nuclear lamina KW - nucleolus KW - nucleus Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-97033 ER - TY - JOUR A1 - Batsios, Petros A1 - Ren, Xiang A1 - Baumann, Otto A1 - Larochelle, Denis A. A1 - Gräf, Ralph T1 - Src1 is a Protein of the Inner Nuclear Membrane Interacting with the Dictyostelium Lamin NE81 JF - Cells N2 - The nuclear envelope (NE) consists of the outer and inner nuclear membrane (INM), whereby the latter is bound to the nuclear lamina. Src1 is a Dictyostelium homologue of the helix-extension-helix family of proteins, which also includes the human lamin-binding protein MAN1. Both endogenous Src1 and GFP-Src1 are localized to the NE during the entire cell cycle. Immuno-electron microscopy and light microscopy after differential detergent treatment indicated that Src1 resides in the INM. FRAP experiments with GFP-Src1 cells suggested that at least a fraction of the protein could be stably engaged in forming the nuclear lamina together with the Dictyostelium lamin NE81. Both a BioID proximity assay and mis-localization of soluble, truncated mRFP-Src1 at cytosolic clusters consisting of an intentionally mis-localized mutant of GFP-NE81 confirmed an interaction of Src1 and NE81. Expression GFP-Src11–646, a fragment C-terminally truncated after the first transmembrane domain, disrupted interaction of nuclear membranes with the nuclear lamina, as cells formed protrusions of the NE that were dependent on cytoskeletal pulling forces. Protrusions were dependent on intact microtubules but not actin filaments. Our results indicate that Src1 is required for integrity of the NE and highlight Dictyostelium as a promising model for the evolution of nuclear architecture. KW - Dictyostelium KW - lamin KW - nuclear lamina KW - nucleus KW - nucleolus KW - HeH-protein KW - LEM-domain protein Y1 - 2016 U6 - https://doi.org/10.3390/cells5010013 SN - 2073-4409 VL - 5 IS - 1 PB - MDPI CY - Basel ER -