TY - JOUR A1 - Buschmann, Albrecht T1 - Der Bürger, der Krieg und der Held BT - André Malraux' L'Espoir oder die Sensucht des Fliegers JF - Literaturen des Bürgerkriegs Y1 - 2008 SN - 978-3-89626-680-4 SP - 203 EP - 218 PB - Trafo CY - Berlin ER - TY - JOUR A1 - von Treskow, Isabella T1 - Techniken der Ästhetisierung von innergesellschaftlicher Gewalt BT - italienisch-italienische Feindschaft bei Elio Vittorini, Ital Calvin und Beppe Fenoglio JF - Literaturen des Bürgerkriegs Y1 - 2008 SN - 978-3-89626-680-4 SP - 159 EP - 183 PB - Trafo CY - Berlin ER - TY - JOUR A1 - Ortiz Wallner, Alexandra T1 - Die Ästetisierung der Gewalt am Beispiel der Romane von Horacio Castellaos Moya JF - Literaturen des Bürgerkriegs Y1 - 2008 SN - 978-3-89626-680-4 SP - 75 EP - 89 PB - Trafo CY - Berlin ER - TY - JOUR A1 - Bandau, Anja A1 - Buschmann, Albrecht A1 - von Treskow, Isabella T1 - Einleitung BT - Literaturen des Bürgerkrieges - Überlegungen zu ihren soziohistorischen und ästetischen Konfigurationen JF - Literaturen des Bürgerkriegs Y1 - 2008 SN - 978-3-89626-680-4 SP - 7 EP - 18 PB - Trafo CY - Berlin ER - TY - BOOK ED - Bandau, Anja ED - Buschmann, Albrecht ED - von Treskow, Isabella T1 - Literaturen des Bürgerkriegs T3 - Potsdamer Beiträge zur Kultur- und Sozialgeschichte Y1 - 2008 SN - 978-3-89626-680-4 VL - 6 PB - Trafo CY - Berlin ER - TY - JOUR A1 - Faber, Eike T1 - Kulturgeschichte des Hellenismus: von Alexander dem Großen bis Kleopatra / Hrsg.: Weber, Gregor: Stuttgart: Klett-Cotta, 2007. - 503 S. - ISBN: 978-3-608-94126-5 JF - H-Soz-Kult Y1 - 2008 UR - https://www.hsozkult.de/publicationreview/id/reb-11679 SN - 2196-5307 PB - Humboldt-Universität zu Berlin CY - Berlin ER - TY - JOUR A1 - Faber, Eike T1 - Rezension zu: Errington, R. Malcolm: A History of the Hellenistic World: 323 - 30 BC. - New York: Wiley & Sons, 2008. - 368 S. - ISBN: 978-0-631-23388-6 JF - Historische Literatur : Rezensionszeitschrift von H-Soz-u-Kult Y1 - 2008 U6 - https://doi.org/https://doi.org/10.18452/17855 SN - 2199-9171 SN - 1611-9509 VL - 6 IS - 4 SP - 16 EP - 17 PB - Humboldt-Universität zu Berlin CY - Berlin ER - TY - CHAP A1 - Gronau, Norbert A1 - Vladova, Gergana A1 - Thim, Christof T1 - Umgang mit Wissen im interkulturellen Vergleich BT - Einführung und Leitfragen T2 - Umgang mit Wissen im interkulturellen Vergleich : Beiträge aus Forschung und Unternehmenspraxis ; Acatech-Workshop, Potsdam, 20. Mai 2008 N2 - Die Bedeutung der Ressource Wissen für die Unternehmensentwicklung ist heutzutage unumstritten. Um wettbewerbsfähig bleiben zu können, müssen Unternehmen die Erzeugung, Teilung und systematische Nutzung von Wissen fördern. Dabei stehen sowohl die individuelle Wissensbasis (und damit jeder Mitarbeiter) als auch die kollektive Wissensbasis (und damit das ganze Unternehmen) im Vordergrund. Der Faktor Kultur gewinnt in diesem Zusammenhang zunehmend an Bedeutung: Er beeinflusst alle drei Ebenen des Wissensmanagements - Mensch, Organisation und Technologie. Neben den Besonderheiten der Organisationskultur und der Kultur unterschiedlicher Mitarbeitergruppen sind in international agierenden Unternehmen auch die spezifischen Merkmale der jeweiligen Landeskultur zu berücksichtigen. Gemeinsam mit dem Lehrstuhl für Wirtschaftsinformatik und Electronic Government der Universität Potsdam hat acatech im Mai 2008 einen Workshop mit Vertretern aus Wirtschaft, Politik und Wissenschaft zum Umgang mit Wissen im interkulturellen Vergleich veranstaltet. Vor diesem Hintergrund entstand der acatech diskutiert-Band "Umgang mit Wissen im interkulturellen Vergleich - Beiträge aus Forschung und Unternehmenspraxis". Darin enthalten sind Beiträge, die u. a. danach fragen, welche wechselseitigen Beziehungen zwischen Technik und Kultur bestehen, inwieweit Experten- und Wissensnetzwerke als interkulturelles Instrument zum Umgang mit Wissen geeignet sind, wie Unternehmen ihre Mitarbeiter auf Auslandseinsätze und die Begegnung mit fremden Kulturen vorbereiten können und welche Rolle Kommunikation als Methode des Wissenstransfers spielt. Y1 - 2008 SN - 978-3-8167-7822-6 VL - 2008 SP - 11 EP - 25 PB - Fraunhofer-IRB-Verl. CY - Stuttgart ER - TY - JOUR A1 - Neyer, Franz A1 - Boden, Michael A1 - Reiche, Kathenna A1 - Nowitz, Alex A1 - Ravic Strubel, Antje A1 - Lachmann, Torsten A1 - Palent, Andrea A1 - Schubert, Mike A1 - Heide, Judith A1 - Rowe, Philipp A1 - Peitzker, Tania A1 - Wicke, Markus A1 - Neitzke, Kai A1 - Wagner, Nelli T1 - Portal alumni T2 - Das Ehemaligen-Magazin der Universität Potsdam N2 - Liebe Leserin, lieber Leser, Castingshows schießen in letzter Zeit wie Pilze aus dem Boden. Ein Mangel an Bewerbern für diese Formate scheint nicht zu bestehen. Reich und berühmt sein wie Leonardo DiCaprio, der angeblich sogar mitten im brasilianischen Regenwald von einem Indianer erkannt wurde das ist das Ziel. Die erhoffte Prominenz ist bei Kandidaten dieser Shows oft Selbstzweck. Aber es gibt natürlich auch noch Menschen, die ihre Bekanntheit ihrer künstlerischen Passion, ihrem politischen Engagement oder ihren sportlichen Leistungen verdanken. Mitunter ist es diesen Menschen sogar eher lästig als angenehm, wenn sie im Rampenlicht stehen. Nach solchen Menschen aus dem Kreise unserer Ehemaligen haben wir gesucht und sind fündig geworden. Ihren Werdegang können Sie in unserem Titelthema nachlesen. Wie Prominenz und Persönlichkeit sich gegenseitig beeinflussen, warum Menschen überhaupt im Licht der Öffentlichkeit stehen wollen und wie man mit den negativen Seiten der eigenen Bekanntheit umgehen kann, erläutert Persönlichkeitspsychologe Prof. Dr. Franz Neyer in einem einführenden Artikel. Unter der Rubrik "alumni insight" lesen Sie beispielsweise, wie man in Russland eine Firma gründet oder vor welchen Herausforderungen ein Deutschlehrer in Usbekistan steht. Falls Sie sich gerade bewerben und noch Tipps zum Verfassen Ihres Lebenslaufs suchen, könnte ein Blick in die Rubrik "wegweiser" hilfreich sein. N2 - Dear readers, in recent years, casting shows have been springing up like mushrooms. Candidates for shows of this format do not seem to be lacking at all. To be rich and famous like Leonardo DiCaprio-who was allegedly even recognised by a member of an indigenous people in the Brazilian rainforest-this is the goal. The prominence for which candidates hope to attain through these shows is often an end in itse!f Nonetheless, there are also other people who become well-known through their artistic passion, their political activities, or their success in sports. For these people, it is actually sometimes more annoying than enjoyable to stand in the limelight. We looked for, and found, prominent people amongst our alumni. You can read about their paths in life in this issue's main section. How prominence and personality injluence one-another, why people want to stand in the firnelight at all, and how one can handle the negative sides of prominence, all of this is discussed in an introductory article by the psychologist of personality, Professor Dr. Franz Neyer. ln the section "alumni insight," you can read for example about how one establishes a business in Russia, or about what challenges a German teacher faces in Uzbekistan. ln case you are currently applyingfor jobs and are looking for tips on how to improve your curriculum vitae, a look at this issue's "wegweiser" section might be helpful. We wish you a pleasant read and Iook forward to your comments. T3 - Portal alumni : das Ehemaligen-Magazin der Universität Potsdam - 6/2008 Y1 - 2008 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-482134 VL - 2008 IS - 6 ER - TY - BOOK A1 - Petersen, Jens T1 - Max Webers Rechtssoziologie und die juristische Methodenlehre N2 - Während über Max Webers Religionssoziologie ganze Bibliotheken geschrieben worden sind, gibt es zu seiner Rechtssoziologie – ungeachtet ihrer von Talcott Parsons herausgestellten Zentralität in Webers Werk – vergleichsweise wenige Veröffentlichungen. Insbesondere ist sein Verhältnis zur juristischen Methodenlehre nahezu unberücksichtigt geblieben, obwohl er als promovierter und habilitierter Jurist im weitesten Sinne von ihr ausgegangen ist. Max Webers Rechtssoziologie ist für die Rechtsdogmatik nicht zuletzt deshalb so interessant, weil Weber das Recht und die juristische Methode inwendig kannte und von daher deutend verstehen konnte. Für die Neuauflage hat Jens Petersen alle Nachweise auf die Max-Weber-Gesamtausgabe umgestellt und nicht nur die in den vergangenen fünf Jahren erschienene Literatur zu seiner Rechtssoziologie berücksichtigt, sondern auch älteres Schrifttum. Y1 - 2008 SN - 978-3-16-159210-4 U6 - https://doi.org/10.1628/978-3-16-159121-1 PB - Siebeck CY - Berlin ET - 3. Aufl. ER - TY - GEN A1 - Voltmer, Edgar A1 - Kieschke, Ulf A1 - Schwappach, David L.B. A1 - Wirsching, Michael A1 - Spahn, Claudia T1 - Psychosocial health risk factors and resources of medical students and physicians BT - a cross-sectional study T2 - Postprints der Universität Potsdam : Humanwissenschaftliche Reihe N2 - Background Epidemiological data indicate elevated psychosocial health risks for physicians, e.g., burnout, depression, marital disturbances, alcohol and substance abuse, and suicide. The purpose of this study was to identify psychosocial health resources and risk factors in profession-related behaviour and experience patterns of medical students and physicians that may serve as a basis for appropriate health promoting interventions. Methods The questionnaire -Related Behaviour and Experience "Work administered in cross-sectional surveys to students in the first (n = 475) and in the fifth year of studies (n = 355) in required courses at three German universities and to physicians in early professional life in the vicinity of these universities (n = 381). Results Scores reflecting a healthy behaviour pattern were less likely in physicians (16.7%) compared to 5th year (26.0%) and 1st year students (35.1%) while scores representing unambitious and resigned patterns were more common among physicians (43.4% vs. 24.4% vs. 41.0% and 27.3% vs. 17.2% vs. 23.3 respectively). Female and male responders differed in the domains professional commitment, resistance to stress and emotional well-being. Female physicians on average scored higher in the dimensions resignation tendencies, satisfaction with life and experience of social support, and lower in career ambition. Conclusion The results show distinct psychosocial stress patterns among medical students and physicians. Health promotion and prevention of psychosocial symptoms and impairments should be integrated as a required part of the medical curriculum and be considered an important issue during the further training of physicians. T3 - Zweitveröffentlichungen der Universität Potsdam : Humanwissenschaftliche Reihe - 641 KW - medical student KW - risk pattern KW - emotional distance KW - professional commitment KW - burnout syndrome Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-431211 SN - 1866-8364 IS - 641 ER - TY - GEN A1 - Yang, Lei A1 - Tang, Renjie A1 - Zhu, Jinqi A1 - Liu, Hua A1 - Mueller-Roeber, Bernd A1 - Xia, Huijun A1 - Zhang, Hongxia T1 - Enhancement of stress tolerance in transgenic tobacco plants constitutively expressing AtIpk2β, an inositol polyphosphate 6-/3-kinase from Arabidopsis thaliana T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Inositol phosphates (IPs) and their turnover products have been implicated to play important roles in stress signaling in eukaryotic cells. In higher plants genes encoding inositol polyphosphate kinases have been identified previously, but their physiological functions have not been fully resolved. Here we expressed Arabidopsis inositol polyphosphate 6-/3-kinase (AtIpk2 beta) in two heterologous systems, i.e. the yeast Saccharomyces cerevisiae and in tobacco (Nicotiana tabacum), and tested the effect on abiotic stress tolerance. Expression of AtIpk2 beta rescued the salt-, osmotic- and temperature-sensitive growth defects of a yeast mutant strain (arg82 Delta) that lacks inositol polyphosphate multikinase activity encoded by the ARG82/IPK2 gene. Transgenic tobacco plants constitutively expressing AtIpk2 beta under the control of the Cauliflower Mosaic Virus 35S promoter were generated and found to exhibit improved tolerance to diverse abiotic stresses when compared to wild type plants. Expression patterns of various stress responsive genes were enhanced, and the activities of anti-oxidative enzymes were elevated in transgenic plants, suggesting a possible involvement of AtIpk2 beta in plant stress responses. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 954 KW - arabidopsis thaliana KW - AtIpk2 beta KW - inositol phosphate KW - IP3 KW - stress tolerance KW - transgenic tobacco Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-431225 SN - 1866-8372 IS - 954 ER - TY - GEN A1 - Andorf, Sandra A1 - Gärtner, Tanja A1 - Steinfath, Matthias A1 - Witucka-Wall, Hanna A1 - Altmann, Thomas A1 - Repsilber, Dirk T1 - Towards systems biology of heterosis BT - a hypothesis about molecular network structure applied for the Arabidopsis metabolome T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - We propose a network structure-based model for heterosis, and investigate it relying on metabolite profiles from Arabidopsis. A simple feed-forward two-layer network model (the Steinbuch matrix) is used in our conceptual approach. It allows for directly relating structural network properties with biological function. Interpreting heterosis as increased adaptability, our model predicts that the biological networks involved show increasing connectivity of regulatory interactions. A detailed analysis of metabolite profile data reveals that the increasing-connectivity prediction is true for graphical Gaussian models in our data from early development. This mirrors properties of observed heterotic Arabidopsis phenotypes. Furthermore, the model predicts a limit for increasing hybrid vigor with increasing heterozygosity—a known phenomenon in the literature. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 949 KW - partial correlation KW - biological network KW - metabolite profile KW - molecular network KW - significant edge Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-436274 SN - 1866-8372 IS - 949 ER - TY - GEN A1 - Arvidsson, Samuel Janne A1 - Kwasniewski, Miroslaw A1 - Riaño- Pachón, Diego Mauricio A1 - Mueller-Roeber, Bernd T1 - QuantPrime BT - a flexible tool for reliable high-throughput primer design for quantitative PCR T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Background Medium- to large-scale expression profiling using quantitative polymerase chain reaction (qPCR) assays are becoming increasingly important in genomics research. A major bottleneck in experiment preparation is the design of specific primer pairs, where researchers have to make several informed choices, often outside their area of expertise. Using currently available primer design tools, several interactive decisions have to be made, resulting in lengthy design processes with varying qualities of the assays. Results Here we present QuantPrime, an intuitive and user-friendly, fully automated tool for primer pair design in small- to large-scale qPCR analyses. QuantPrime can be used online through the internet http://www.quantprime.de/ or on a local computer after download; it offers design and specificity checking with highly customizable parameters and is ready to use with many publicly available transcriptomes of important higher eukaryotic model organisms and plant crops (currently 295 species in total), while benefiting from exon-intron border and alternative splice variant information in available genome annotations. Experimental results with the model plant Arabidopsis thaliana, the crop Hordeum vulgare and the model green alga Chlamydomonas reinhardtii show success rates of designed primer pairs exceeding 96%. Conclusion QuantPrime constitutes a flexible, fully automated web application for reliable primer design for use in larger qPCR experiments, as proven by experimental data. The flexible framework is also open for simple use in other quantification applications, such as hydrolyzation probe design for qPCR and oligonucleotide probe design for quantitative in situ hybridization. Future suggestions made by users can be easily implemented, thus allowing QuantPrime to be developed into a broad-range platform for the design of RNA expression assays. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 943 KW - prime pair KW - genome annotation KW - specific prime pair KW - primer pair design KW - quantification protocol Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-431531 SN - 1866-8372 IS - 943 ER - TY - GEN A1 - Kaastra, Jelle S. A1 - Paerels, Frits B.S. A1 - Durret, Florence A1 - Schindler, Sabine A1 - Richter, Philipp T1 - Thermal radiation processes T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - We discuss the different physical processes that are important to understand the thermal X-ray emission and absorption spectra of the diffuse gas in clusters of galaxies and the warm-hot intergalactic medium. The ionisation balance, line and continuum emission and absorption properties are reviewed and several practical examples are given that illustrate the most important diagnostic features in the X-ray spectra. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 891 KW - atomic processes KW - radiation mechanisms: thermal KW - intergalactic medium KW - X-rays: general Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-436220 SN - 1866-8372 IS - 891 SP - 155 EP - 190 ER - TY - GEN A1 - Hartmann, Stefanie A1 - Vision, Todd J. T1 - Using ESTs for phylogenomics BT - can one accurately infer a phylogenetic tree from a gappy alignment? T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - Background While full genome sequences are still only available for a handful of taxa, large collections of partial gene sequences are available for many more. The alignment of partial gene sequences results in a multiple sequence alignment containing large gaps that are arranged in a staggered pattern. The consequences of this pattern of missing data on the accuracy of phylogenetic analysis are not well understood. We conducted a simulation study to determine the accuracy of phylogenetic trees obtained from gappy alignments using three commonly used phylogenetic reconstruction methods (Neighbor Joining, Maximum Parsimony, and Maximum Likelihood) and studied ways to improve the accuracy of trees obtained from such datasets. Results We found that the pattern of gappiness in multiple sequence alignments derived from partial gene sequences substantially compromised phylogenetic accuracy even in the absence of alignment error. The decline in accuracy was beyond what would be expected based on the amount of missing data. The decline was particularly dramatic for Neighbor Joining and Maximum Parsimony, where the majority of gappy alignments contained 25% to 40% incorrect quartets. To improve the accuracy of the trees obtained from a gappy multiple sequence alignment, we examined two approaches. In the first approach, alignment masking, potentially problematic columns and input sequences are excluded from from the dataset. Even in the absence of alignment error, masking improved phylogenetic accuracy up to 100-fold. However, masking retained, on average, only 83% of the input sequences. In the second approach, alignment subdivision, the missing data is statistically modelled in order to retain as many sequences as possible in the phylogenetic analysis. Subdivision resulted in more modest improvements to alignment accuracy, but succeeded in including almost all of the input sequences. Conclusion These results demonstrate that partial gene sequences and gappy multiple sequence alignments can pose a major problem for phylogenetic analysis. The concern will be greatest for high-throughput phylogenomic analyses, in which Neighbor Joining is often the preferred method due to its computational efficiency. Both approaches can be used to increase the accuracy of phylogenetic inference from a gappy alignment. The choice between the two approaches will depend upon how robust the application is to the loss of sequences from the input set, with alignment masking generally giving a much greater improvement in accuracy but at the cost of discarding a larger number of the input sequences. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 889 KW - Maximum Parsimony KW - pairwise distance KW - phylogenetic inference KW - alignment error KW - Maximum Parsimony tree Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-436670 SN - 1866-8372 IS - 889 ER - TY - GEN A1 - Baur, Heiner A1 - Hirschmüller, Anja A1 - Jahn, Michael A1 - Müller, Steffen A1 - Mayer, Frank T1 - Therapeutic efficiency and biomechanical effects of sport insoles in female runners T2 - Postprints der Universität Potsdam : Humanwissenschaftliche Reihe T3 - Zweitveröffentlichungen der Universität Potsdam : Humanwissenschaftliche Reihe - 624 KW - polyurethane foam KW - overuse injury KW - biomechanical effect KW - female runner KW - injury symptom Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-435525 SN - 1866-8364 IS - 624 ER - TY - GEN A1 - Neigenfind, Jost A1 - Gyetvai, Gabor A1 - Basekow, Rico A1 - Diehl, Svenja A1 - Achenbach, Ute A1 - Gebhardt, Christiane A1 - Selbig, Joachim A1 - Kersten, Birgit T1 - Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - Background: Haplotype inference based on unphased SNP markers is an important task in population genetics. Although there are different approaches to the inference of haplotypes in diploid species, the existing software is not suitable for inferring haplotypes from unphased SNP data in polyploid species, such as the cultivated potato (Solanum tuberosum). Potato species are tetraploid and highly heterozygous. Results: Here we present the software SATlotyper which is able to handle polyploid and polyallelic data. SATlo-typer uses the Boolean satisfiability problem to formulate Haplotype Inference by Pure Parsimony. The software excludes existing haplotype inferences, thus allowing for calculation of alternative inferences. As it is not known which of the multiple haplotype inferences are best supported by the given unphased data set, we use a bootstrapping procedure that allows for scoring of alternative inferences. Finally, by means of the bootstrapping scores, it is possible to optimise the phased genotypes belonging to a given haplotype inference. The program is evaluated with simulated and experimental SNP data generated for heterozygous tetraploid populations of potato. We show that, instead of taking the first haplotype inference reported by the program, we can significantly improve the quality of the final result by applying additional methods that include scoring of the alternative haplotype inferences and genotype optimisation. For a sub-population of nineteen individuals, the predicted results computed by SATlotyper were directly compared with results obtained by experimental haplotype inference via sequencing of cloned amplicons. Prediction and experiment gave similar results regarding the inferred haplotypes and phased genotypes. Conclusion: Our results suggest that Haplotype Inference by Pure Parsimony can be solved efficiently by the SAT approach, even for data sets of unphased SNP from heterozygous polyploids. SATlotyper is freeware and is distributed as a Java JAR file. The software can be downloaded from the webpage of the GABI Primary Database at http://www.gabipd.org/projects/satlotyper/. The application of SATlotyper will provide haplotype information, which can be used in haplotype association mapping studies of polyploid plants. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 883 KW - linkage disequilibrium KW - pure parsimony KW - potato KW - resistance KW - efficient KW - solanum KW - Conjunctive Normal Form KW - Full Adder KW - Disjunctive Normal Form KW - Haplotype Inference KW - Genotype Inference Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-435011 SN - 1866-8372 IS - 883 ER - TY - GEN A1 - Lamprecht, Anna-Lena A1 - Margaria, Tiziana A1 - Steffen, Bernhard A1 - Sczyrba, Alexander A1 - Hartmeier, Sven A1 - Giegerich, Robert T1 - GeneFisher-P BT - variations of GeneFisher as processes in Bio-jETI T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Background: PCR primer design is an everyday, but not trivial task requiring state-of-the-art software. We describe the popular tool GeneFisher and explain its recent restructuring using workflow techniques. We apply a service-oriented approach to model and implement GeneFisher-P, a process-based version of the GeneFisher web application, as a part of the Bio-jETI platform for service modeling and execution. We show how to introduce a flexible process layer to meet the growing demand for improved user-friendliness and flexibility. Results: Within Bio-jETI, we model the process using the jABC framework, a mature model-driven, service-oriented process definition platform. We encapsulate remote legacy tools and integrate web services using jETI, an extension of the jABC for seamless integration of remote resources as basic services, ready to be used in the process. Some of the basic services used by GeneFisher are in fact already provided as individual web services at BiBiServ and can be directly accessed. Others are legacy programs, and are made available to Bio-jETI via the jETI technology. The full power of service-based process orientation is required when more bioinformatics tools, available as web services or via jETI, lead to easy extensions or variations of the basic process. This concerns for instance variations of data retrieval or alignment tools as provided by the European Bioinformatics Institute (EBI). Conclusions: The resulting service-and process-oriented GeneFisher-P demonstrates how basic services from heterogeneous sources can be easily orchestrated in the Bio-jETI platform and lead to a flexible family of specialized processes tailored to specific tasks. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 868 KW - Basic Service KW - European Bioinformatics Institute KW - Computation Tree Logic KW - Polymerase Chain Reaction Experiment KW - Input Validation Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-434241 SN - 1866-8372 IS - 868 ER - TY - GEN A1 - Ginoux, Nicolas A1 - Habib, Georges T1 - Geometric aspects of transversal Killing spinors on Riemannian flows T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - We study a Killing spinor type equation on spin Riemannian flows. We prove integrability conditions and partially classify those flows carrying non-trivial solutions. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 867 KW - foliations KW - spin geometry KW - 53C12 KW - 53C27 Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-434783 SN - 1866-8372 IS - 867 SP - 69 EP - 90 ER -