TY  - JOUR
A1  - Altmann, Thomas
T1  - Methodik der funktionellen Genomanalyse : wie mit Mikroarrays die Aktivität vieler Gene erfasst wird
Y1  - 2002
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Basse, Christoph W.
A1  - Kerschbamer, Christine
A1  - Brustmann, Markus
A1  - Kahmann, Regine
T1  - Evidence for a Ustilago maydis steroid 5 alpha-reductase by functional expression in Arabidopsis det2-1 mutants
Y1  - 2002
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Brandt, Stephan Peter
A1  - Kloska, Sebastian
A1  - Kehr, Julia
T1  - Using array hybridization to monitore gene expression at the single cell level
Y1  - 2002
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Colebatch, G.
A1  - Kloska, Sebastian
A1  - Trevaskis, B.
A1  - Freund, S.
A1  - Udvardi, M. K.
T1  - Novel aspects of symbiotic nitrogen fixation uncovered by transcript profiling with cDNA arrays
Y1  - 2002
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Fiehn, Oliver
A1  - Kloska, Sebastian
T1  - Integrated studies on plant biology using multiparallel techniques
Y1  - 2001
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Koßmann, Jens
T1  - Photosynthesis and primary metabolism
Y1  - 2001
SN  - 1360-1385
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Müssig, Carsten
T1  - Brassinosteroid signaling in plants
Y1  - 2001
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Müssig, Carsten
A1  - Fischer, Sabine
T1  - Brassinosteroid-regulated gene expression
Y1  - 2002
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Narang, R. A.
T1  - Phosphate accquisition heterosis in Arabidopsis thaliana : a morphological and physiological analysis
Y1  - 2001
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Schlüter, U.
A1  - Köpke, D.
A1  - Müssig, Carsten
T1  - Analysis of carbohydrate metabolism of CPD antisense plants and the brassinosteroid-deficient cbb1 mutant
Y1  - 2002
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Schlüter, U.
A1  - Muschak, M.
A1  - Berger, Dieter
T1  - Photosynthetic performance of an Arabidopsis mutant with elevated stomatal density (sdd1-1) under different light regimes
Y1  - 2003
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Schmid, K. J.
A1  - Sörensen, Rossleff T.
A1  - Stracke, R.
A1  - Törjek, Otto
A1  - Mitchel-Olds, T.
A1  - Weisshaar, Bernd
T1  - Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana
Y1  - 2003
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Taylor, Janet
A1  - King, Ross. D.
A1  - Fiehn, Oliver
T1  - Application of metabolomics to plant genotype discrimination using statistics and machine learning
Y1  - 2003
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Thimm, O.
A1  - Essigmann, B.
A1  - Kloska, Sebastian
A1  - Buckhout, Thomas J.
T1  - Response of arabidopsis to iron deficiency stress as revealed by microarray analysis
Y1  - 2001
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Törjek, Otto
A1  - Berger, Dieter
A1  - Meyer, Rhonda C.
A1  - Müssig, Carsten
A1  - Schmidt, K. J.
A1  - Sorensen, T. R.
A1  - Weisshaar, Bernd
A1  - Olds-Mitchell, T.
T1  - Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis
Y1  - 2003
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - Udvardi, M. K.
A1  - Essigmann, B.
A1  - Colebatch, G.
A1  - Kloska, Sebastian
A1  - Smith, P.
A1  - Trevaskis, B.
T1  - Lotus japonicus functional genomics : cDNA microarray analysis uncovers novel nodulins
Y1  - 2002
SN  - 0-85199-591-8
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - von Groll, Uritza
T1  - Stomatal cell biology
Y1  - 2003
ER  - 
TY  - JOUR
A1  - Altmann, Thomas
A1  - von Groll, Uritza
A1  - Berger, Dieter
T1  - The subtilisin-like serine protease SDD1 mediates cell-cell signaling during Arabidopsis stomatal development
Y1  - 2002
ER  - 
TY  - GEN
A1  - Andorf, Sandra
A1  - Gärtner, Tanja
A1  - Steinfath, Matthias
A1  - Witucka-Wall, Hanna
A1  - Altmann, Thomas
A1  - Repsilber, Dirk
T1  - Towards systems biology of heterosis
BT  - a hypothesis about molecular network structure applied for the Arabidopsis metabolome
T2  - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - We propose a network structure-based model for heterosis, and investigate it relying on metabolite profiles from Arabidopsis. A simple feed-forward two-layer network model (the Steinbuch matrix) is used in our conceptual approach. It allows for directly relating structural network properties with biological function. Interpreting heterosis as increased adaptability, our model predicts that the biological networks involved show increasing connectivity of regulatory interactions. A detailed analysis of metabolite profile data reveals that the increasing-connectivity prediction is true for graphical Gaussian models in our data from early development. This mirrors properties of observed heterotic Arabidopsis phenotypes. Furthermore, the model predicts a limit for increasing hybrid vigor with increasing heterozygosity—a known phenomenon in the literature.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 949 
KW  - partial correlation
KW  - biological network
KW  - metabolite profile
KW  - molecular network
KW  - significant edge
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-436274
SN  - 1866-8372
IS  - 949
ER  - 
TY  - JOUR
A1  - Andorf, Sandra
A1  - Meyer, Rhonda C.
A1  - Selbig, Joachim
A1  - Altmann, Thomas
A1  - Repsilber, Dirk
T1  - Integration of a systems biological network analysis and QTL results for biomass heterosis in arabidopsis thaliana
JF  - PLoS one
N2  - To contribute to a further insight into heterosis we applied an integrative analysis to a systems biological network approach and a quantitative genetics analysis towards biomass heterosis in early Arabidopsis thaliana development. The study was performed on the parental accessions C24 and Col-0 and the reciprocal crosses. In an over-representation analysis it was tested if the overlap between the resulting gene lists of the two approaches is significantly larger than expected by chance. Top ranked genes in the results list of the systems biological analysis were significantly over-represented in the heterotic QTL candidate regions for either hybrid as well as regarding mid-parent and best-parent heterosis. This suggests that not only a few but rather several genes that influence biomass heterosis are located within each heterotic QTL region. Furthermore, the overlapping resulting genes of the two integrated approaches were particularly enriched in biomass related pathways. A chromosome-wise over-representation analysis gave rise to the hypothesis that chromosomes number 2 and 4 probably carry a majority of the genes involved in biomass heterosis in the early development of Arabidopsis thaliana.
Y1  - 2012
U6  - https://doi.org/10.1371/journal.pone.0049951
SN  - 1932-6203
VL  - 7
IS  - 11
PB  - PLoS
CY  - San Fransisco
ER  -