TY - GEN A1 - Vicente, Luis T1 - Ángel J. Gallego, Phase theory T2 - Postprints der Universität Potsdam : Humanwissenschaftliche Reihe T3 - Zweitveröffentlichungen der Universität Potsdam : Humanwissenschaftliche Reihe - 539 Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-413116 SN - 1866-8364 IS - 539 SP - 719 EP - 724 ER - TY - THES A1 - Hörnke, Maria T1 - ß-Sheet formation of amyloidogenic model peptides at hydrophobic-hydrophilic interfaces BT - ß-Sheet formation of amyloidogenic model peptides at hydrophobic-hydrophilic interfaces Y1 - 2011 CY - Potsdam ER - TY - JOUR A1 - Lilie, Hauke A1 - Baer, Dorit A1 - Kettner, Karina A1 - Weininger, Ulrich A1 - Balbach, Jochen A1 - Naumann, Manfred A1 - Mueller, Eva-Christina A1 - Otto, Albrecht A1 - Gast, Klaus A1 - Golbik, Ralph A1 - Kriegel, Thomas T1 - Yeast hexokinase isoenzyme ScHxk2 stability of a two-domain protein with discontinuous domains JF - Protein engineering design & selection N2 - The hexokinase isoenzyme 2 of Saccharomyces cerevisiae (ScHxk2) represents an archetype of a two-domain protein with the active site located in a cleft between the two domains. Binding of the substrate glucose results in a rigid body movement of the two domains leading to a cleft closure of the active site. Both domains of this enzyme are composed of discontinuous peptide sequences. This structural feature is reflected in the stability and folding of the ScHxk2 protein. Structural transitions induced by urea treatment resulted in the population of a thermodynamically stable folding intermediate, which, however, does not correspond to a molecule with one domain folded and the other unfolded. As demonstrated by different spectroscopic techniques, both domains are structurally affected by the partial denaturation. The intermediate possesses only 40% of the native secondary structural content and a substantial increase in the Stokes radius as judged by circular dichroism and dynamic light scattering analyses. One-dimensional H-1 NMR data prove that all tryptophan residues are in a non-native environment in the intermediate, indicating substantial changes in the tertiary structure. Still, the intermediate possesses quite a high stability for a transition intermediate of about Delta G = -22 kJ mol(-1). KW - dynamic light scattering KW - NMR KW - ScHxk2 KW - stability KW - transition intermediate Y1 - 2011 U6 - https://doi.org/10.1093/protein/gzq098 SN - 1741-0126 VL - 24 IS - 1-2 SP - 79 EP - 87 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Lilie, Hauke A1 - Bär, Dorit A1 - Kettner, Karina A1 - Weininger, Ulrich A1 - Balbach, Jochen A1 - Naumann, Manfred A1 - Müller, Eva-Christina A1 - Otto, Albrecht A1 - Gast, Klaus A1 - Golbik, Ralph T1 - Yeast hexokinase isoenzyme ScHxk2 : stability of a two-domain protein with discontinuous domains N2 - The hexokinase isoenzyme 2 of Saccharomyces cerevisiae (ScHxk2) represents an archetype of a two-domain protein with the active site located in a cleft between the two domains. Binding of the substrate glucose results in a rigid body movement of the two domains leading to a cleft closure of the active site. Both domains of this enzyme are composed of discontinuous peptide sequences. This structural feature is reflected in the stability and folding of the ScHxk2 protein. Structural transitions induced by urea treatment resulted in the population of a thermodynamically stable folding intermediate, which, however, does not correspond to a molecule with one domain folded and the other unfolded. As demonstrated by different spectroscopic techniques, both domains are structurally affected by the partial denaturation. The intermediate possesses only 40% of the native secondary structural content and a substantial increase in the Stokes radius as judged by circular dichroism and dynamic light scattering analyses. One-dimensional 1H NMR data prove that all tryptophan residues are in a non-native environment in the intermediate, indicating substantial changes in the tertiary structure. Still, the intermediate possesses quite a high stability for a transition intermediate of about ;G = ;22 kJ mol;1. Y1 - 2011 UR - http://peds.oxfordjournals.org/content/24/1-2/79.long SN - 0269-2139 ER - TY - JOUR A1 - Redelberger, David A1 - Seduk, Farida A1 - Genest, Olivier A1 - Mejean, Vincent A1 - Leimkühler, Silke A1 - Iobbi-Nivol, Chantal T1 - YcdY Protein of Escherichia coli, an Atypical Member of the TorD Chaperone Family JF - Journal of bacteriology N2 - The TorD family of specific chaperones is divided into four subfamilies dedicated to molybdoenzyme biogenesis and a fifth one, exemplified by YcdY of Escherichia coli, for which no defined partner has been identified so far. We propose that YcdY is the chaperone of YcdX, a zinc protein involved in the swarming motility process of E. coli, since YcdY interacts with YcdX and increases its activity in vitro. Y1 - 2011 U6 - https://doi.org/10.1128/JB.05927-11 SN - 0021-9193 VL - 193 IS - 23 SP - 6512 EP - 6516 PB - American Society for Microbiology CY - Washington ER - TY - JOUR A1 - Kalimuthu, Palraj A1 - Leimkühler, Silke A1 - Bernhardt, Paul V. T1 - Xanthine dehydrogenase electrocatalysis autocatalysis and novel activity JF - The journal of physical chemistry : B, Condensed matter, materials, surfaces, interfaces & biophysical chemistry N2 - The enzyme xanthine dehydrogenase (XDH) from the purple photosynthetic bacterium Rhodobacter capsulatus catalyzes the oxidation of hypoxanthine to xanthine and xanthine to uric acid as part of purine metabolism. The native electron acceptor is NAD(+) but herein we show that uric acid in its 2-electron oxidized form is able to act as an artificial electron acceptor from XDH in an electrochemically driven catalytic system. Hypoxanthine oxidation is also observed with the novel production of uric acid in a series of two consecutive 2-electron oxidation reactions via xanthine. XDH exhibits native activity in terms of its pH optimum and inhibition by allopurinol. Y1 - 2011 U6 - https://doi.org/10.1021/jp111809f SN - 1520-6106 VL - 115 IS - 11 SP - 2655 EP - 2662 PB - American Chemical Society CY - Washington ER - TY - THES A1 - Wang, Long T1 - X-tracking the usage interest on web sites T1 - X-tracking des Nutzungsinteresses für Webseiten N2 - The exponential expanding of the numbers of web sites and Internet users makes WWW the most important global information resource. From information publishing and electronic commerce to entertainment and social networking, the Web allows an inexpensive and efficient access to the services provided by individuals and institutions. The basic units for distributing these services are the web sites scattered throughout the world. However, the extreme fragility of web services and content, the high competence between similar services supplied by different sites, and the wide geographic distributions of the web users drive the urgent requirement from the web managers to track and understand the usage interest of their web customers. This thesis, "X-tracking the Usage Interest on Web Sites", aims to fulfill this requirement. "X" stands two meanings: one is that the usage interest differs from various web sites, and the other is that usage interest is depicted from multi aspects: internal and external, structural and conceptual, objective and subjective. "Tracking" shows that our concentration is on locating and measuring the differences and changes among usage patterns. This thesis presents the methodologies on discovering usage interest on three kinds of web sites: the public information portal site, e-learning site that provides kinds of streaming lectures and social site that supplies the public discussions on IT issues. On different sites, we concentrate on different issues related with mining usage interest. The educational information portal sites were the first implementation scenarios on discovering usage patterns and optimizing the organization of web services. In such cases, the usage patterns are modeled as frequent page sets, navigation paths, navigation structures or graphs. However, a necessary requirement is to rebuild the individual behaviors from usage history. We give a systematic study on how to rebuild individual behaviors. Besides, this thesis shows a new strategy on building content clusters based on pair browsing retrieved from usage logs. The difference between such clusters and the original web structure displays the distance between the destinations from usage side and the expectations from design side. Moreover, we study the problem on tracking the changes of usage patterns in their life cycles. The changes are described from internal side integrating conceptual and structure features, and from external side for the physical features; and described from local side measuring the difference between two time spans, and global side showing the change tendency along the life cycle. A platform, Web-Cares, is developed to discover the usage interest, to measure the difference between usage interest and site expectation and to track the changes of usage patterns. E-learning site provides the teaching materials such as slides, recorded lecture videos and exercise sheets. We focus on discovering the learning interest on streaming lectures, such as real medias, mp4 and flash clips. Compared to the information portal site, the usage on streaming lectures encapsulates the variables such as viewing time and actions during learning processes. The learning interest is discovered in the form of answering 6 questions, which covers finding the relations between pieces of lectures and the preference among different forms of lectures. We prefer on detecting the changes of learning interest on the same course from different semesters. The differences on the content and structure between two courses leverage the changes on the learning interest. We give an algorithm on measuring the difference on learning interest integrated with similarity comparison between courses. A search engine, TASK-Moniminer, is created to help the teacher query the learning interest on their streaming lectures on tele-TASK site. Social site acts as an online community attracting web users to discuss the common topics and share their interesting information. Compared to the public information portal site and e-learning web site, the rich interactions among users and web content bring the wider range of content quality, on the other hand, provide more possibilities to express and model usage interest. We propose a framework on finding and recommending high reputation articles in a social site. We observed that the reputation is classified into global and local categories; the quality of the articles having high reputation is related with the content features. Based on these observations, our framework is implemented firstly by finding the articles having global or local reputation, and secondly clustering articles based on their content relations, and then the articles are selected and recommended from each cluster based on their reputation ranks. N2 - Wegen des exponentiellen Ansteigens der Anzahl an Internet-Nutzern und Websites ist das WWW (World Wide Web) die wichtigste globale Informationsressource geworden. Das Web bietet verschiedene Dienste (z. B. Informationsveröffentlichung, Electronic Commerce, Entertainment oder Social Networking) zum kostengünstigen und effizienten erlaubten Zugriff an, die von Einzelpersonen und Institutionen zur Verfügung gestellt werden. Um solche Dienste anzubieten, werden weltweite, vereinzelte Websites als Basiseinheiten definiert. Aber die extreme Fragilität der Web-Services und -inhalte, die hohe Kompetenz zwischen ähnlichen Diensten für verschiedene Sites bzw. die breite geographische Verteilung der Web-Nutzer treiben einen dringenden Bedarf für Web-Manager und das Verfolgen und Verstehen der Nutzungsinteresse ihrer Web-Kunden. Die Arbeit zielt darauf ab, dass die Anforderung "X-tracking the Usage Interest on Web Sites" erfüllt wird. "X" hat zwei Bedeutungen. Die erste Bedeutung ist, dass das Nutzungsinteresse von verschiedenen Websites sich unterscheidet. Außerdem stellt die zweite Bedeutung dar, dass das Nutzungsinteresse durch verschiedene Aspekte (interne und externe, strukturelle und konzeptionelle) beschrieben wird. Tracking zeigt, dass die Änderungen zwischen Nutzungsmustern festgelegt und gemessen werden. Die Arbeit eine Methodologie dar, um das Nutzungsinteresse gekoppelt an drei Arten von Websites (Public Informationsportal-Website, E-Learning-Website und Social-Website) zu finden. Wir konzentrieren uns auf unterschiedliche Themen im Bezug auf verschieden Sites, die mit Usage-Interest-Mining eng verbunden werden. Education Informationsportal-Website ist das erste Implementierungsscenario für Web-Usage-Mining. Durch das Scenario können Nutzungsmuster gefunden und die Organisation von Web-Services optimiert werden. In solchen Fällen wird das Nutzungsmuster als häufige Pagemenge, Navigation-Wege, -Strukturen oder -Graphen modelliert. Eine notwendige Voraussetzung ist jedoch, dass man individuelle Verhaltensmuster aus dem Verlauf der Nutzung (Usage History) wieder aufbauen muss. Deshalb geben wir in dieser Arbeit eine systematische Studie zum Nachempfinden der individuellen Verhaltensweisen. Außerdem zeigt die Arbeit eine neue Strategie, dass auf Page-Paaren basierten Content-Clustering aus Nutzungssite aufgebaut werden. Der Unterschied zwischen solchen Clustern und der originalen Webstruktur ist der Abstand zwischen Zielen der Nutzungssite und Erwartungen der Designsite. Darüber hinaus erforschen wir Probleme beim Tracking der Änderungen von Nutzungsmustern in ihrem Lebenszyklus. Die Änderungen werden durch mehrere Aspekte beschrieben. Für internen Aspekt werden konzeptionelle Strukturen und Funktionen integriert. Der externe Aspekt beschreibt physische Eigenschaften. Für lokalen Aspekt wird die Differenz zwischen zwei Zeitspannen gemessen. Der globale Aspekt zeigt Tendenzen der Änderung entlang des Lebenszyklus. Eine Plattform "Web-Cares" wird entwickelt, die die Nutzungsinteressen findet, Unterschiede zwischen Nutzungsinteresse und Website messen bzw. die Änderungen von Nutzungsmustern verfolgen kann. E-Learning-Websites bieten Lernmaterialien wie z.B. Folien, erfaßte Video-Vorlesungen und Übungsblätter an. Wir konzentrieren uns auf die Erfoschung des Lerninteresses auf Streaming-Vorlesungen z.B. Real-Media, mp4 und Flash-Clips. Im Vergleich zum Informationsportal Website kapselt die Nutzung auf Streaming-Vorlesungen die Variablen wie Schauzeit und Schautätigkeiten während der Lernprozesse. Das Lerninteresse wird erfasst, wenn wir Antworten zu sechs Fragen gehandelt haben. Diese Fragen umfassen verschiedene Themen, wie Erforschung der Relation zwischen Teilen von Lehrveranstaltungen oder die Präferenz zwischen den verschiedenen Formen der Lehrveranstaltungen. Wir bevorzugen die Aufdeckung der Veränderungen des Lerninteresses anhand der gleichen Kurse aus verschiedenen Semestern. Der Differenz auf den Inhalt und die Struktur zwischen zwei Kurse beeinflusst die Änderungen auf das Lerninteresse. Ein Algorithmus misst die Differenz des Lerninteresses im Bezug auf einen Ähnlichkeitsvergleich zwischen den Kursen. Die Suchmaschine „Task-Moniminer“ wird entwickelt, dass die Lehrkräfte das Lerninteresse für ihre Streaming-Vorlesungen über das Videoportal tele-TASK abrufen können. Social Websites dienen als eine Online-Community, in den teilnehmenden Web-Benutzern die gemeinsamen Themen diskutieren und ihre interessanten Informationen miteinander teilen. Im Vergleich zur Public Informationsportal-Website und E-Learning Website bietet diese Art von Website reichhaltige Interaktionen zwischen Benutzern und Inhalten an, die die breitere Auswahl der inhaltlichen Qualität bringen. Allerdings bietet eine Social-Website mehr Möglichkeiten zur Modellierung des Nutzungsinteresses an. Wir schlagen ein Rahmensystem vor, die hohe Reputation für Artikel in eine Social-Website empfiehlt. Unsere Beobachtungen sind, dass die Reputation in globalen und lokalen Kategorien klassifiziert wird. Außerdem wird die Qualität von Artikeln mit hoher Reputation mit den Content-Funktionen in Zusammenhang stehen. Durch die folgenden Schritte wird das Rahmensystem im Bezug auf die Überwachungen implementiert. Der erste Schritt ist, dass man die Artikel mit globalen oder lokalen Reputation findet. Danach werden Artikel im Bezug auf ihre Content-Relationen in jeder Kategorie gesammelt. Zum Schluß werden die ausgewählten Artikel aus jedem basierend auf ihren Reputation-Ranking Cluster empfohlen. KW - Tracking KW - Nutzungsinteresse KW - Webseite KW - Tracking KW - Usage Interest KW - Web Sites Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-51077 ER - TY - JOUR A1 - Giewekemeyer, K. A1 - Krueger, S. P. A1 - Kalbfleisch, S. A1 - Bartels, Meike A1 - Beta, Carsten A1 - Salditt, T. T1 - X-ray propagation microscopy of biological cells using waveguides as a quasipoint source JF - Physical review : A, Atomic, molecular, and optical physics N2 - We have used x-ray waveguides as highly confining optical elements for nanoscale imaging of unstained biological cells using the simple geometry of in-line holography. The well-known twin-image problem is effectively circumvented by a simple and fast iterative reconstruction. The algorithm which combines elements of the classical Gerchberg-Saxton scheme and the hybrid-input-output algorithm is optimized for phase-contrast samples, well-justified for imaging of cells at multi-keV photon energies. The experimental scheme allows for a quantitative phase reconstruction from a single holographic image without detailed knowledge of the complex illumination function incident on the sample, as demonstrated for freeze-dried cells of the eukaryotic amoeba Dictyostelium discoideum. The accessible resolution range is explored by simulations, indicating that resolutions on the order of 20 nm are within reach applying illumination times on the order of minutes at present synchrotron sources. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevA.83.023804 SN - 1050-2947 VL - 83 IS - 2 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Parkin, E. R. A1 - Broos, Patrick S. A1 - Townsley, L. K. A1 - Pittard, J. M. A1 - Moffat, Anthony F. J. A1 - Naze, Y. A1 - Rauw, G. A1 - Oskinova, Lida A1 - Waldron, W. L. T1 - X-RAY EMISSION FROM THE DOUBLE-BINARY OB-STAR SYSTEM QZ CAR (HD 93206) JF - ASTROPHYSICAL JOURNAL SUPPLEMENT SERIES N2 - X-ray observations of the double-binary OB-star system QZ Car (HD 93206) obtained with the Chandra X-ray Observatory over a period of roughly 2 years are presented. The respective orbits of systems A (O9.7 I+b2 v, P-A = 21 days) and B (O8 III+o9 v, P-B = 6 days) are reasonably well sampled by the observations, allowing the origin of the X-ray emission to be examined in detail. The X-ray spectra can be well fitted by an attenuated three-temperature thermal plasma model, characterized by cool, moderate, and hot plasma components at kT similar or equal to 0.2, 0.7, and 2 keV, respectively, and a circumstellar absorption of similar or equal to 0.2 x 10(22) cm(-2). Although the hot plasma component could be indicating the presence of wind-wind collision shocks in the system, the model fluxes calculated from spectral fits, with an average value of similar or equal to 7x10(-13) erg s(-1) cm(-2), do not show a clear correlation with the orbits of the two constituent binaries. A semi-analytical model of QZ Car reveals that a stable momentum balance may not be established in either system A or B. Yet, despite this, system B is expected to produce an observed X-ray flux well in excess of the observations. If one considers the wind of the O8 III star to be disrupted by mass transfer, the model and observations are in far better agreement, which lends support to the previous suggestion of mass transfer in the O8 III+o9 v binary. We conclude that the X-ray emission from QZ Car can be reasonably well accounted for by a combination of contributions mainly from the single stars and the mutual wind-wind collision between systems A and B. KW - hydrodynamics KW - stars: early-type KW - stars: individual (QZ Carinae) KW - stars: massive KW - stars: winds, outflows KW - X-rays: stars Y1 - 2011 U6 - https://doi.org/10.1088/0067-0049/194/1/8 SN - 0067-0049 VL - 194 IS - 1 PB - IOP PUBLISHING LTD CY - BRISTOL ER - TY - JOUR A1 - Oskinova, Lida A1 - Hamann, Wolf-Rainer A1 - Cassinelli, Joseph P. A1 - Brown, John C. A1 - Todt, Helge Tobias T1 - X-ray emission from massive stars with magnetic fields JF - Astronomische Nachrichten = Astronomical notes N2 - We investigate the connections between the magnetic fields and the X-ray emission from massive stars. Our study shows that the X-ray properties of known strongly magnetic stars are diverse: while some comply to the predictions of the magnetically confined wind model, others do not. We conclude that strong, hard, and variable X-ray emission may be a sufficient attribute of magnetic massive stars, but it is not a necessary one. We address the general properties of X-ray emission from "normal" massive stars, especially the long standing mystery about the correlations between the parameters of X-ray emission and fundamental stellar properties. The recent development in stellar structure modeling shows that small-scale surface magnetic fields may be common. We suggest a "hybrid" scenario which could explain the X-ray emission from massive stars by a combination of magnetic mechanisms on the surface and shocks in the stellar wind. The magnetic mechanisms and the wind shocks are triggered by convective motions in sub-photospheric layers. This scenario opens the door for a natural explanation of the well established correlation between bolometric and X-ray luminosities. KW - stars: magnetic fields KW - stars: mass-loss KW - stars: winds, outflows KW - stars: Wolf-Rayet KW - techniques: spectroscopic KW - X-rays: stars Y1 - 2011 U6 - https://doi.org/10.1002/asna.201111602 SN - 0004-6337 VL - 332 IS - 9-10 SP - 988 EP - 993 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Fiehler, Katja A1 - Bannert, Michael M. A1 - Bischoff, Matthias A1 - Blecker, Carlo A1 - Stark, Rudolf A1 - Vaitl, Dieter A1 - Franz, Volker H. A1 - Roesler, Frank T1 - Working memory maintenance of grasp-target information in the human posterior parietal cortex JF - NeuroImage : a journal of brain function N2 - Event-related functional magnetic resonance imaging was applied to identify cortical areas involved in maintaining target information in working memory used for an upcoming grasping action. Participants had to grasp with their thumb and index finger of the dominant right hand three-dimensional objects of different size and orientation. Reaching-to-grasp movements were performed without visual feedback either immediately after object presentation or after a variable delay of 2-12 s. The right inferior parietal cortex demonstrated sustained neural activity throughout the delay, which overlapped with activity observed during encoding of the grasp target. Immediate and delayed grasping activated similar motor-related brain areas and showed no differential activity. The results suggest that the right inferior parietal cortex plays an important functional role in working memory maintenance of grasp-related information. Moreover, our findings confirm the assumption that brain areas engaged in maintaining information are also involved in encoding the same information, and thus extend previous findings on working memory function of the posterior parietal cortex in saccadic behavior to reach-to-grasp movements. Y1 - 2011 U6 - https://doi.org/10.1016/j.neuroimage.2010.09.080 SN - 1053-8119 VL - 54 IS - 3 SP - 2401 EP - 2411 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Voltmer, Edgar A1 - Spahn, Claudia A1 - Schaarschmidt, Uwe A1 - Kieschke, Ulf T1 - Work-related behavior and experience patterns of entrepreneurs compared to teachers and physicians JF - International archives of occupational and environmental health N2 - Purpose This study examined the status of health-related behavior and experience patterns of entrepreneurs in comparison with teachers and physicians to identify specific health risks and resources. Methods Entrepreneurs (n = 632), teachers (n = 5,196), and physicians (n = 549) were surveyed in a cross-sectional design. The questionnaire Work-related Behavior and Experience Patterns (AVEM) was used for all professions and, in addition, two scales (health prevention and self-confidence) from the Checklist for Entrepreneurs in the sample of entrepreneurs. Results The largest proportion of the entrepreneurs (45%) presented with a healthy pattern (compared with 18.4% teachers and 18.3% physicians). Thirty-eight percent of entrepreneurs showed a risk pattern of overexertion and stress, followed by teachers (28.9%) and physicians (20.6%). Unambitious or burnout patterns were seen in only 9.3/8.2% of entrepreneurs, respectively, and 25.3/27.3% of teachers, and 39.6/21.5% of physicians. While the distribution of patterns in teachers and physicians differed significantly between genders, a gender difference was not found among entrepreneurs. Entrepreneurs with the risk pattern of overexertion scored significantly (P < 0.01) lower in self-confidence and health care than those with the healthy pattern. Conclusions The development of a successful enterprise depends, in part, on the health of the entrepreneur. The large proportion of entrepreneurs with the healthy pattern irrespective of gender may support the notion that self-selection effects of healthy individuals in this special career might be important. At the same time, a large proportion was at risk for overexertion and might benefit from measures to cope with professional demands and stress and promote a healthy behavior pattern. KW - Entrepreneurs KW - Physicians KW - Teachers KW - Occupational stress KW - Psychosocial health risks and resources Y1 - 2011 U6 - https://doi.org/10.1007/s00420-011-0632-9 SN - 0340-0131 VL - 84 IS - 5 SP - 479 EP - 490 PB - Springer CY - New York ER - TY - JOUR A1 - Mueller, Marina Elsa Herta A1 - Koszinski, Sylvia A1 - Brenning, Alexander A1 - Verch, Gernot A1 - Korn, Ulrike A1 - Sommer, Michael T1 - Within-field variation of mycotoxin contamination of winter wheat is related to indicators of soil moisture JF - Plant and soil N2 - Humidity is an important determinant of the mycotoxin production (DON, ZEA) by Fusarium species in the grain ears. From a landscape perspective humidity is not evenly distributed across fields. The topographically-controlled redistribution of water within a single field rather leads to spatially heterogeneous soil water content and air humidity. Therefore we hypothesized that the spatial distribution of mycotoxins is related to these topographically-controlled factors. To test this hypothesis we studied the mycotoxin concentrations at contrasting topographic relief positions, i.e. hilltops and depressions characterized by soils of different soil moisture regimes, on ten winter wheat fields in 2006 and 2007. Maize was the preceding crop and minimum tillage was practiced in the fields. The different topographic positions were associated with moderate differences in DON and ZEA concentrations in 2006, but with significant differences in 2007, with six times higher median ZEA and two times higher median DON detected at depression sites compared to the hilltops. The depression sites correspond to a higher topographic wetness index as well as redoximorphic properties in soil profiles, which empirically supports our hypothesis at least for years showing wetter conditions in sensitive time windows for Fusarium infections. KW - Wheat KW - Mycotoxins KW - Within-field variation KW - Topography KW - Humidity KW - Soil redoximorphic feature Y1 - 2011 U6 - https://doi.org/10.1007/s11104-010-0695-5 SN - 0032-079X SN - 1573-5036 VL - 342 IS - 1-2 SP - 289 EP - 300 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Zhang, Zhuodong A1 - Wieland, Ralf A1 - Reiche, Matthias A1 - Funk, Roger A1 - Hoffmann, Carsten A1 - Li, Yong A1 - Sommer, Michael T1 - Wind modelling for wind erosion research by open source computational fluid dynamics JF - Ecological informatics : an international journal on ecoinformatics and computational ecolog N2 - The open source computational fluid dynamics (CFD) wind model (CFD-WEM) for wind erosion research in the Xilingele grassland in Inner Mongolia (autonomous region, China) is compared with two open source CFD models Gerris and OpenFOAM. The evaluation of these models was made according to software technology, implemented methods, handling, accuracy and calculation speed. All models were applied to the same wind tunnel data set. Results show that the simplest CFD-WEM has the highest calculation speed with acceptable accuracy, and the most powerful OpenFOAM produces the simulation with highest accuracy and the lowest calculation speed. Gerris is between CFD-WEM and OpenFOAM. It calculates faster than OpenFOAM, and it is capable to solve different CFD problems. CFD-WEM is the optimal model to be further developed for wind erosion research in Inner Mongolia grassland considering its efficiency and the uncertainties of other input data. However, for other applications using CFD technology, Gerris and OpenFOAM can be good choices. This paper shows the powerful capability of open source CFD software in wind erosion study, and advocates more involvement of open source technology in wind erosion and related ecological researches. KW - Computational fluid dynamics KW - Wind modelling KW - Open source KW - Wind erosion KW - Gerris KW - OpenFOAM KW - SAMT Y1 - 2011 U6 - https://doi.org/10.1016/j.ecoinf.2011.02.001 SN - 1574-9541 VL - 6 IS - 5 SP - 316 EP - 324 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Fischer, Martin H. A1 - Brugger, Peter T1 - When digits help digits spatial-numerical associations point to finger counting as prime example of embodied cognition JF - Frontiers in psychology N2 - Spatial numerical associations (SNAs) are prevalent yet their origin is poorly understood. We first consider the possible prime role of reading habits in shaping SNAs and list three observations that argue against a prominent influence of this role: (1) directional reading habits for numbers may conflict with those for non-numerical symbols, (2) short-term experimental manipulations can overrule the impact of decades of reading experience, (3) SNAs predate the acquisition of reading. As a promising alternative, we discuss behavioral, neuroscientific, and neuropsychological evidence in support of finger counting as the most likely initial determinant of SNAs. Implications of this "manumerical cognition" stance for the distinction between grounded, embodied, and situated cognition are discussed. KW - embodied cognition KW - finger counting KW - numerical cognition Y1 - 2011 U6 - https://doi.org/10.3389/fpsyg.2011.00260 SN - 1664-1078 VL - 2 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Albert, Cécile H. A1 - Grassein, Fabrice A1 - Schurr, Frank Martin A1 - Vieilledent, Ghislain A1 - Violle, Cyrille T1 - When and how should intraspecific variability be considered in trait-based plant ecology? JF - Perspectives in plant ecology, evolution and systematics N2 - Trait-based studies have become extremely common in plant ecology. Trait-based approaches often rely on the tacit assumption that intraspecific trait variability (ITV) is negligible compared to interspecific variability, so that species can be characterized by mean trait values. Yet, numerous recent studies have challenged this assumption by showing that ITV significantly affects various ecological processes. Accounting for ITV may thus strengthen trait-based approaches, but measuring trait values on a large number of individuals per species and site is not feasible. Therefore, it is important and timely to synthesize existing knowledge on ITV in order to (1) decide critically when ITV should be considered, and (2) establish methods for incorporating this variability. Here we propose a practical set of rules to identify circumstances under which ITV should be accounted for. We formulate a spatial trait variance partitioning hypothesis to highlight the spatial scales at which ITV cannot be ignored in ecological studies. We then refine a set of four consecutive questions on the research question, the spatial scale, the sampling design, and the type of studied traits, to determine case-by-case if a given study should quantify ITV and test its effects. We review methods for quantifying ITV and develop a step-by-step guideline to design and interpret simulation studies that test for the importance of ITV. Even in the absence of quantitative knowledge on ITV, its effects can be assessed by varying trait values within species within realistic bounds around the known mean values. We finish with a discussion of future requirements to further incorporate ITV within trait-based approaches. This paper thus delineates a general framework to account for ITV and suggests a direction towards a more quantitative trait-based ecology. KW - Comparative ecology KW - Functional ecology KW - Genetic variability KW - Intraspecific functional variability KW - Phenotypic plasticity KW - Plant functional hairs KW - Within-species variability Y1 - 2011 U6 - https://doi.org/10.1016/j.ppees.2011.04.003 SN - 1433-8319 VL - 13 IS - 3 SP - 217 EP - 225 PB - Elsevier CY - Jena ER - TY - JOUR A1 - Manovich, Lev T1 - What is visualization? JF - DIGAREC Series N2 - Over the last 20 years, information visualization became a common tool in science and also a growing presence in the arts and culture at large. However, the use of visualization in cultural research is still in its infancy. Based on the work in the analysis of video games, cinema, TV, animation, Manga and other media carried out in Software Studies Initiative at University of California, San Diego over last two years, a number of visualization techniques and methods particularly useful for cultural and media research are presented. Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-49849 SN - 1867-6219 SN - 1867-6227 IS - 6 SP - 116 EP - 156 ER - TY - JOUR A1 - von der Malsburg, Titus Raban A1 - Vasishth, Shravan T1 - What is the scanpath signature of syntactic reanalysis? JF - Journal of memory and language N2 - Which repair strategy does the language system deploy when it gets garden-pathed, and what can regressive eye movements in reading tell us about reanalysis strategies? Several influential eye-tracking studies on syntactic reanalysis (Frazier & Rayner, 1982; Meseguer, Carreiras, & Clifton, 2002; Mitchell, Shen, Green, & Hodgson, 2008) have addressed this question by examining scanpaths, i.e., sequential patterns of eye fixations. However, in the absence of a suitable method for analyzing scanpaths, these studies relied on simplified dependent measures that are arguably ambiguous and hard to interpret. We address the theoretical question of repair strategy by developing a new method that quantifies scanpath similarity. Our method reveals several distinct fixation strategies associated with reanalysis that went undetected in a previously published data set (Meseguer et al., 2002). One prevalent pattern suggests re-parsing of the sentence, a strategy that has been discussed in the literature (Frazier & Rayner, 1982); however, readers differed tremendously in how they orchestrated the various fixation strategies. Our results suggest that the human parsing system non-deterministically adopts different strategies when confronted with the disambiguating material in garden-path sentences. KW - Reading KW - Syntactic reanalysis KW - Eye movements KW - Parsing KW - Individual differences KW - Scanpaths Y1 - 2011 U6 - https://doi.org/10.1016/j.jml.2011.02.004 SN - 0749-596X VL - 65 IS - 2 SP - 109 EP - 127 PB - Elsevier CY - San Diego ER - TY - THES A1 - Camara Mattos Martins, Marina T1 - What are the downstream targets of trehalose-6-phosphate signalling in plants? Y1 - 2011 CY - Potsdam ER - TY - JOUR A1 - Glatzel, Stefan A1 - Laschewsky, André A1 - Lutz, Jean-Francois T1 - Well-Defined uncharged polymers with a sharp UCST in water and in physiological milieu JF - Macromolecules : a publication of the American Chemical Society Y1 - 2011 U6 - https://doi.org/10.1021/ma102677k SN - 0024-9297 VL - 44 IS - 2 SP - 413 EP - 415 PB - American Chemical Society CY - Washington ER -