TY - JOUR A1 - Kolora, Sree Rohit Raj A1 - Weigert, Anne A1 - Saffari, Amin A1 - Kehr, Stephanie A1 - Walter Costa, Maria Beatriz A1 - Spröer, Cathrin A1 - Indrischek, Henrike A1 - Chintalapati, Manjusha A1 - Lohse, Konrad A1 - Doose, Gero A1 - Overmann, Jörg A1 - Bunk, Boyke A1 - Bleidorn, Christoph A1 - Grimm-Seyfarth, Annegret A1 - Henle, Klaus A1 - Nowick, Katja A1 - Faria, Rui A1 - Stadler, Peter F. A1 - Schlegel, Martin T1 - Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation JF - GigaScience N2 - Background Lacerta viridis and Lacerta bilineata are sister species of European green lizards (eastern and western clades, respectively) that, until recently, were grouped together as the L. viridis complex. Genetic incompatibilities were observed between lacertid populations through crossing experiments, which led to the delineation of two separate species within the L. viridis complex. The population history of these sister species and processes driving divergence are unknown. We constructed the first high-quality de novo genome assemblies for both L. viridis and L. bilineata through Illumina and PacBio sequencing, with annotation support provided from transcriptome sequencing of several tissues. To estimate gene flow between the two species and identify factors involved in reproductive isolation, we studied their evolutionary history, identified genomic rearrangements, detected signatures of selection on non-coding RNA, and on protein-coding genes. Findings Here we show that gene flow was primarily unidirectional from L. bilineata to L. viridis after their split at least 1.15 million years ago. We detected positive selection of the non-coding repertoire; mutations in transcription factors; accumulation of divergence through inversions; selection on genes involved in neural development, reproduction, and behavior, as well as in ultraviolet-response, possibly driven by sexual selection, whose contribution to reproductive isolation between these lacertid species needs to be further evaluated. Conclusion The combination of short and long sequence reads resulted in one of the most complete lizard genome assemblies. The characterization of a diverse array of genomic features provided valuable insights into the demographic history of divergence among European green lizards, as well as key species differences, some of which are candidates that could have played a role in speciation. In addition, our study generated valuable genomic resources that can be used to address conservation-related issues in lacertids. KW - sister species KW - PacBio and Illumina KW - de novo hybrid assembly KW - transcripts KW - noncoding RNA KW - zinc fingers KW - positive selection KW - UV response KW - inversions KW - gene flow Y1 - 2018 U6 - https://doi.org/10.1093/gigascience/giy160 SN - 2047-217X VL - 8 IS - 2 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Grimm-Seyfarth, Annegret A1 - Mihoub, Jean-Baptiste A1 - Henle, Klaus T1 - Functional traits determine the different effects of prey, predators, and climatic extremes on desert reptiles JF - Ecosphere : the magazine of the International Ecology University N2 - Terrestrial reptiles are particularly vulnerable to climate change. Their highest density and diversity can be found in hot drylands, ecosystems which demonstrate extreme climatic conditions. However, reptiles are not isolated systems but part of a large species assemblage with many trophic dependencies. While direct relations among climatic conditions, invertebrates, vegetation, or reptiles have already been explored, to our knowledge, species’ responses to direct and indirect pathways of multiple climatic and biotic factors and their interactions have rarely been examined comprehensively. We investigated direct and indirect effects of climatic and biotic parameters on the individual (body condition) and population level (occupancy) of eight abundant lizard species with different functional traits in an arid Australian lizard community using a 30‐yr multi‐trophic monitoring study. We used structural equation modeling to disentangle single and interactive effects. We then assessed whether species could be grouped into functional groups according to their functional traits and their responses to different parameters. We found that lizard species differed strongly in how they responded to climatic and biotic factors. However, the factors to which they responded seemed to be determined by their functional traits. While responses on body condition were determined by habitat, activity time, and prey, responses on occupancy were determined by habitat specialization, body size, and longevity. Our findings highlight the importance of indirect pathways through climatic and biotic interactions, which should be included into predictive models to increase accuracy when predicting species’ responses to climate change. Since one might never obtain all mechanistic pathways at the species level, we propose an approach of identifying relevant species traits that help grouping species into functional groups at different ecological levels, which could then be used for predictive modeling. KW - Australia KW - climate change KW - Gekkonidae KW - periodic flooding KW - Scincidae KW - species functional traits KW - species interactions KW - structural equation modeling Y1 - 2019 U6 - https://doi.org/10.1002/ecs2.2865 SN - 2150-8925 VL - 10 IS - 9 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Grimm-Seyfarth, Annegret A1 - Mihoub, Jean-Baptiste A1 - Henle, Klaus T1 - Too hot to die? The effects of vegetation shading on past, present, and future activity budgets of two diurnal skinks from arid Australia JF - Ecology and evolution N2 - Behavioral thermoregulation is an important mechanism allowing ectotherms to respond to thermal variations. Its efficiency might become imperative for securing activity budgets under future climate change. For diurnal lizards, thermal microhabitat variability appears to be of high importance, especially in hot deserts where vegetation is highly scattered and sensitive to climatic fluctuations. We investigated the effects of a shading gradient from vegetation on body temperatures and activity timing for two diurnal, terrestrial desert lizards, Ctenotus regius, and Morethia boulengeri, and analyzed their changes under past, present, and future climatic conditions. Both species’ body temperatures and activity timing strongly depended on the shading gradient provided by vegetation heterogeneity. At high temperatures, shaded locations provided cooling temperatures and increased diurnal activity. Conversely, bushes also buffered cold temperature by saving heat. According to future climate change scenarios, cooler microhabitats might become beneficial to warm‐adapted species, such as C. regius, by increasing the duration of daily activity. Contrarily, warmer microhabitats might become unsuitable for less warm‐adapted species such as M. boulengeri for which midsummers might result in a complete restriction of activity irrespective of vegetation. However, total annual activity would still increase provided that individuals would be able to shift their seasonal timing towards spring and autumn. Overall, we highlight the critical importance of thermoregulatory behavior to buffer temperatures and its dependence on vegetation heterogeneity. Whereas studies often neglect ecological processes when anticipating species’ responses to future climate change the strongest impact of a changing climate on terrestrial ectotherms in hot deserts is likely to be the loss of shaded microhabitats rather than the rise in temperature itself. We argue that conservation strategies aiming at addressing future climate changes should focus more on the cascading effects of vegetation rather than on shifts of species distributions predicted solely by climatic envelopes. KW - activity predictions KW - behavioral thermoregulation KW - Ctenotus regius KW - extrapolating experimental data KW - Morethia boulengeri KW - operative temperature KW - operative thermal environment Y1 - 2017 U6 - https://doi.org/10.1002/ece3.3238 SN - 2045-7758 VL - 7 SP - 6803 EP - 6813 PB - Wiley CY - Hoboken ER -