TY - JOUR A1 - Doering, Ulrike A1 - Grigoriev, Dmitry A1 - Tapio, Kosti A1 - Bald, Ilko A1 - Böker, Alexander T1 - Synthesis of nanostructured protein-mineral-microcapsules by sonication JF - Soft matter N2 - We propose a simple and eco-friendly method for the formation of composite protein-mineral-microcapsules induced by ultrasound treatment. Protein- and nanoparticle-stabilized oil-in-water (O/W) emulsions loaded with different oils are prepared using high-intensity ultrasound. The formation of thin composite mineral proteinaceous shells is realized with various types of nanoparticles, which are pre-modified with Bovine Serum Albumin (BSA) and subsequently characterized by EDX, TGA, zeta potential measurements and Raman spectroscopy. Cryo-SEM and EDX mapping visualizations show the homogeneous distribution of the densely packed nanoparticles in the capsule shell. In contrast to the results reported in our previous paper,(1) the shell of those nanostructured composite microcapsules is not cross-linked by the intermolecular disulfide bonds between BSA molecules. Instead, a Pickering-Emulsion formation takes place because of the amphiphilicity-driven spontaneous attachment of the BSA-modified nanoparticles at the oil/water interface. Using colloidal particles for the formation of the shell of the microcapsules, in our case silica, hydroxyapatite and calcium carbonate nanoparticles, is promising for the creation of new functional materials. The nanoparticulate building blocks of the composite shell with different chemical, physical or morphological properties can contribute to additional, sometimes even multiple, features of the resulting capsules. Microcapsules with shells of densely packed nanoparticles could find interesting applications in pharmaceutical science, cosmetics or in food technology. Y1 - 2022 U6 - https://doi.org/10.1039/d1sm01638e SN - 1744-6848 VL - 18 IS - 13 SP - 2558 EP - 2568 PB - Royal Society of Chemistry CY - London ER - TY - JOUR A1 - Schürmann, Robin A1 - Titov, Evgenii A1 - Ebel, Kenny A1 - Kogikoski Junior, Sergio A1 - Mostafa, Amr A1 - Saalfrank, Peter A1 - Milosavljević, Aleksandar R. A1 - Bald, Ilko T1 - The electronic structure of the metal-organic interface of isolated ligand coated gold nanoparticles JF - Nanoscale Advances N2 - Light induced electron transfer reactions of molecules on the surface of noble metal nanoparticles (NPs) depend significantly on the electronic properties of the metal-organic interface. Hybridized metal-molecule states and dipoles at the interface alter the work function and facilitate or hinder electron transfer between the NPs and ligand. X-ray photoelectron spectroscopy (XPS) measurements of isolated AuNPs coated with thiolated ligands in a vacuum have been performed as a function of photon energy, and the depth dependent information of the metal-organic interface has been obtained. The role of surface dipoles in the XPS measurements of isolated ligand coated NPs is discussed and the binding energy of the Au 4f states is shifted by around 0.8 eV in the outer atomic layers of 4-nitrothiophenol coated AuNPs, facilitating electron transport towards the molecules. Moreover, the influence of the interface dipole depends significantly on the adsorbed ligand molecules. The present study paves the way towards the engineering of the electronic properties of the nanoparticle surface, which is of utmost importance for the application of plasmonic nanoparticles in the fields of heterogeneous catalysis and solar energy conversion. Y1 - 2022 U6 - https://doi.org/10.1039/d1na00737h SN - 2516-0230 VL - 4 IS - 6 SP - 1599 EP - 1607 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Kogikoski Junior, Sergio A1 - Dutta, Anushree A1 - Bald, Ilko T1 - Spatial separation of plasmonic hot-electron generation and a hydrodehalogenation reaction center using a DNA wire JF - ACS nano N2 - Using hot charge carriers far from a plasmonic nanoparticle surface is very attractive for many applications in catalysis and nanomedicine and will lead to a better understanding of plasmon-induced processes, such as hot-charge-carrier- or heat-driven chemical reactions. Herein we show that DNA is able to transfer hot electrons generated by a silver nanoparticle over several nanometers to drive a chemical reaction in a molecule nonadsorbed on the surface. For this we use 8-bromo-adenosine introduced in different positions within a double-stranded DNA oligonucleotide. The DNA is also used to assemble the nanoparticles into nanoparticles ensembles enabling the use of surface-enhanced Raman scattering to track the decomposition reaction. To prove the DNA-mediated transfer, the probe molecule was insulated from the source of charge carriers, which hindered the reaction. The results indicate that DNA can be used to study the transfer of hot electrons and the mechanisms of advanced plasmonic catalysts. KW - plasmonics KW - DNA nanotechnology KW - hot electrons KW - charge transfer KW - SERS KW - superlattices Y1 - 2021 U6 - https://doi.org/10.1021/acsnano.1c09176 SN - 1936-0851 SN - 1936-086X VL - 15 IS - 12 SP - 20562 EP - 20573 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Piekarczyk, Andreas A1 - Heitmann, Ulrike A1 - Weiß, Karl-Anders A1 - Köhl, Michael A1 - Bald, Ilko T1 - Development of a simple setup for temperature dependent mass spectrometric measurements for the investigation of outgassing effects in polymeric materials for solar application JF - Polymer testing N2 - A simple experimental setup for temperature dependent mass spectrometric measurements has been constructed. It consists of a heated sample chamber and a mass spectrometer and allows for measurements under inert gas and ambient air. Based on initial measurements on two extruded polystyrene (XPS) samples a methodology for the data analysis has been developed. With this methodology the outgassing temperature of volatile compounds, which were used as blowing agents, has been identified. Furthermore, the composition of the blowing agents has been analyzed by temperature dependent mass spectra. The results indicate the use of ambient air in one material and a mixture of the banned blowing agents R142b and R22, both hydrochlorofluorocarbons (HCFC), in the other material. The here described methodology provides an easy to use approach to identify such compounds, for example as part of environmental or quality control. Y1 - 2019 U6 - https://doi.org/10.1016/j.polymertesting.2019.106164 SN - 0142-9418 SN - 1873-2348 VL - 81 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Schürmann, Robin A1 - Nagel, Alessandro A1 - Juergensen, Sabrina A1 - Pathak, Anisha A1 - Reich, Stephanie A1 - Pacholski, Claudia A1 - Bald, Ilko T1 - Microscopic understanding of reaction rates observed in plasmon chemistry of nanoparticle-ligand systems JF - The journal of physical chemistry : C, Nanomaterials and interfaces N2 - Surface-enhanced Raman scattering (SERS) is an effective and widely used technique to study chemical reactions induced or catalyzed by plasmonic substrates, since the experimental setup allows us to trigger and track the reaction simultaneously and identify the products. However, on substrates with plasmonic hotspots, the total signal mainly originates from these nanoscopic volumes with high reactivity and the information about the overall consumption remains obscure in SERS measurements. This has important implications; for example, the apparent reaction order in SERS measurements does not correlate with the real reaction order, whereas the apparent reaction rates are proportional to the real reaction rates as demonstrated by finite-difference time-domain (FDTD) simulations. We determined the electric field enhancement distribution of a gold nanoparticle (AuNP) monolayer and calculated the SERS intensities in light-driven reactions in an adsorbed self-assembled molecular monolayer on the AuNP surface. Accordingly, even if a high conversion is observed in SERS due to the high reactivity in the hotspots, most of the adsorbed molecules on the AuNP surface remain unreacted. The theoretical findings are compared with the hot-electron-induced dehalogenation of 4-bromothiophenol, indicating a time dependency of the hot-carrier concentration in plasmon-mediated reactions. To fit the kinetics of plasmon-mediated reactions in plasmonic hotspots, fractal-like kinetics are well suited to account for the inhomogeneity of reactive sites on the substrates, whereas also modified standard kinetics model allows equally well fits. The outcomes of this study are on the one hand essential to derive a mechanistic understanding of reactions on plasmonic substrates by SERS measurements and on the other hand to drive plasmonic reactions with high local precision and facilitate the engineering of chemistry on a nanoscale. Y1 - 2022 U6 - https://doi.org/10.1021/acs.jpcc.2c00278 SN - 1932-7447 SN - 1932-7455 VL - 126 IS - 11 SP - 5333 EP - 5342 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Bald, Ilko A1 - Solov'yov, Ilia A. A1 - Mason, Nigel J. A1 - Solov'yov, Andrey V. T1 - Special issue BT - dynamics of systems on the nanoscale (2018). Editorial JF - The European physical journal. D, Atomic, molecular, optical and plasma physics N2 - The structure, formation and dynamics of both animate and inanimate matter on the nanoscale are a highly interdisciplinary field of rapidly emerging research engaging a broad community encompassing experimentalists, theorists, and technologists. It is relevant for a large variety of molecular and nanosystems of different origin and composition and concerns numerous phenomena originating from physics, chemistry, biology, or materials science. This Topical Issue presents a collection of original research papers devoted to different aspects of structure and dynamics on the nanoscale. Some of the contributions discuss specific applications of the research results in several modern technologies and in next generation medicine. Most of the works of this topical issue were reported at the Fifth International Conference on Dynamics of Systems on the Nanoscale (DySoN) - the premier forum for the presentation of cutting-edge research in this field that was held in Potsdam, Germany in October of 2018. Y1 - 2020 U6 - https://doi.org/10.1140/epjd/e2020-10134-4 SN - 1434-6060 SN - 1434-6079 VL - 74 IS - 4 SP - 75 EP - 82 PB - Springer CY - Berlin ER - TY - JOUR A1 - Doering, Ulrike A1 - Grigoriev, Dmitry A1 - Tapio, Kosti A1 - Rosencrantz, Sophia A1 - Rosencrantz, Ruben R. A1 - Bald, Ilko A1 - Böker, Alexander T1 - About the mechanism of ultrasonically induced protein capsule formation JF - RSC Advances : an international journal to further the chemical sciences / Royal Society of Chemistry N2 - In this paper, we propose a consistent mechanism of protein microcapsule formation upon ultrasound treatment. Aqueous suspensions of bovine serum albumin (BSA) microcapsules filled with toluene are prepared by use of high-intensity ultrasound following a reported method. Stabilization of the oil-in-water emulsion by the adsorption of the protein molecules at the interface of the emulsion droplets is accompanied by the creation of the cross-linked capsule shell due to formation of intermolecular disulfide bonds caused by highly reactive species like superoxide radicals generated sonochemically. The evidence for this mechanism, which until now remained elusive and was not proven properly, is presented based on experimental data from SDS-PAGE, Raman spectroscopy and dynamic light scattering. Y1 - 2021 U6 - https://doi.org/10.1039/d0ra08100k SN - 2046-2069 VL - 11 IS - 27 SP - 16152 EP - 16157 PB - RSC Publishing CY - London ER - TY - JOUR A1 - Kogikoski Junior, Sergio A1 - Tapio, Kosti A1 - Edler von Zander, Robert A1 - Saalfrank, Peter A1 - Bald, Ilko T1 - Raman enhancement of nanoparticle dimers self-assembled using DNA origami nanotriangles JF - Molecules : a journal of synthetic chemistry and natural product chemistry / Molecular Diversity Preservation International N2 - Surface-enhanced Raman scattering is a powerful approach to detect molecules at very low concentrations, even up to the single-molecule level. One important aspect of the materials used in such a technique is how much the signal is intensified, quantified by the enhancement factor (EF). Herein we obtained the EFs for gold nanoparticle dimers of 60 and 80 nm diameter, respectively, self-assembled using DNA origami nanotriangles. Cy5 and TAMRA were used as surface-enhanced Raman scattering (SERS) probes, which enable the observation of individual nanoparticles and dimers. EF distributions are determined at four distinct wavelengths based on the measurements of around 1000 individual dimer structures. The obtained results show that the EFs for the dimeric assemblies follow a log-normal distribution and are in the range of 10(6) at 633 nm and that the contribution of the molecular resonance effect to the EF is around 2, also showing that the plasmonic resonance is the main source of the observed signal. To support our studies, FDTD simulations of the nanoparticle's electromagnetic field enhancement has been carried out, as well as calculations of the resonance Raman spectra of the dyes using DFT. We observe a very close agreement between the experimental EF distribution and the simulated values. KW - surface-enhanced Raman scattering KW - DNA origami KW - resonance Raman KW - scattering KW - nanoparticle dimers Y1 - 2021 U6 - https://doi.org/10.3390/molecules26061684 SN - 1420-3049 VL - 26 IS - 6 PB - MDPI CY - Basel ER - TY - GEN A1 - Wolff, Christian Michael A1 - Canil, Laura A1 - Rehermann, Carolin A1 - Nguyen, Ngoc Linh A1 - Zu, Fengshuo A1 - Ralaiarisoa, Maryline A1 - Caprioglio, Pietro A1 - Fiedler, Lukas A1 - Stolterfoht, Martin A1 - Kogikoski, Junior, Sergio A1 - Bald, Ilko A1 - Koch, Norbert A1 - Unger, Eva L. A1 - Dittrich, Thomas A1 - Abate, Antonio A1 - Neher, Dieter T1 - Correction to 'Perfluorinated self-assembled monolayers enhance the stability and efficiency of inverted perovskite solar cells' (2020, 14 (2), 1445−1456) T2 - ACS nano Y1 - 2020 U6 - https://doi.org/10.1021/acsnano.0c08081 SN - 1936-0851 SN - 1936-086X VL - 14 IS - 11 SP - 16156 EP - 16156 PB - American Chemical Society CY - Washington, DC ER - TY - JOUR A1 - Schmidt, Carsten A1 - Schierack, Peter A1 - Gerber, Ulrike A1 - Schroeder, Christian A1 - Choi, Youngeun A1 - Bald, Ilko A1 - Lehmann, Werner A1 - Rödiger, Stefan T1 - Streptavidin homologues for applications on solid surfaces at high temperatures JF - Langmuir N2 - One of the most commonly used bonds between two biomolecules is the bond between biotin and streptavidin (SA) or streptavidin homologues (SAHs). A high dissociation constant and the consequent high-temperature stability even allows for its use in nucleic acid detection under polymerase chain reaction (PCR) conditions. There are a number of SAHs available, and for assay design, it is of great interest to determine as to which SAH will perform the best under assay conditions. Although there are numerous single studies on the characterization of SAHs in solution or selected solid phases, there is no systematic study comparing different SAHs for biomolecule-binding, hybridization, and PCR assays on solid phases. We compared streptavidin, core streptavidin, traptavidin, core traptavidin, neutravidin, and monomeric streptavidin on the surface of microbeads (10-15 mu m in diameter) and designed multiplex microbead-based experiments and analyzed simultaneously the binding of biotinylated oligonucleotides and the hybridization of oligonucleotides to complementary capture probes. We also bound comparably large DNA origamis to capture probes on the microbead surface. We used a real-time fluorescence microscopy imaging platform, with which it is possible to subject samples to a programmable time and temperature profile and to record binding processes on the microbead surface depending on the time and temperature. With the exception of core traptavidin and monomeric streptavidin, all other SA/SAHs were suitable for our investigations. We found hybridization efficiencies close to 100% for streptavidin, core streptavidin, traptavidin, and neutravidin. These could all be considered equally suitable for hybridization, PCR applications, and melting point analysis. The SA/SAH-biotin bond was temperature sensitive when the oligonucleotide was mono-biotinylated, with traptavidin being the most stable followed by streptavidin and neutravidin. Mono-biotinylated oligonucleotides can be used in experiments with temperatures up to 70 degrees C. When oligonucleotides were bis-biotinylated, all SA/SAH-biotin bonds had similar temperature stability under PCR conditions, even if they comprised a streptavidin variant with slower biotin dissociation and increased mechanostability. Y1 - 2020 U6 - https://doi.org/10.1021/acs.langmuir.9b02339 SN - 0743-7463 VL - 36 IS - 2 SP - 628 EP - 636 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Dutta, Anushree A1 - Schürmann, Robin A1 - Kogikoski Junior, Sergio A1 - Mueller, Niclas S. A1 - Reich, Stephanie A1 - Bald, Ilko T1 - Kinetics and mechanism of plasmon-driven dehalogenation reaction of brominated purine nucleobases on Ag and Au JF - ACS catalysis / American Chemical Society N2 - Plasmon-driven photocatalysis is an emerging and promising application of noble metal nanoparticles (NPs). An understanding of the fundamental aspects of plasmon interaction with molecules and factors controlling their reaction rate in a heterogeneous system is of high importance. Therefore, the dehalogenation kinetics of 8-bromoguanine (BrGua) and 8-bromoadenine (BrAde) on aggregated surfaces of silver (Ag) and gold (Au) NPs have been studied to understand the reaction kinetics and the underlying reaction mechanism prevalent in heterogeneous reaction systems induced by plasmons monitored by surface enhanced Raman scattering (SERS). We conclude that the time-average constant concentration of hot electrons and the time scale of dissociation of transient negative ions (TNI) are crucial in defining the reaction rate law based on a proposed kinetic model. An overall higher reaction rate of dehalogenation is observed on Ag compared with Au, which is explained by the favorable hot-hole scavenging by the reaction product and the byproduct. We therefore arrive at the conclusion that insufficient hole deactivation could retard the reaction rate significantly, marking itself as rate-determining step for the overall reaction. The wavelength dependency of the reaction rate normalized to absorbed optical power indicates the nonthermal nature of the plasmon-driven reaction. The study therefore lays a general approach toward understanding the kinetics and reaction mechanism of a plasmon-driven reaction in a heterogeneous system, and furthermore, it leads to a better understanding of the reactivity of brominated purine derivatives on Ag and Au, which could in the future be exploited, for example, in plasmon-assisted cancer therapy. KW - hot-electrons KW - plasmon-driven catalysis KW - fractal kinetics KW - brominated KW - purines KW - SERS KW - hole scavengers Y1 - 2021 U6 - https://doi.org/10.1021/acscatal.1c01851 SN - 2155-5435 VL - 11 IS - 13 SP - 8370 EP - 8381 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Schneider, Matthias A1 - Fritzsche, Nora A1 - Puciul-Malinowska, Agnieszka A1 - Baliś, Andrzej A1 - Mostafa, Amr A1 - Bald, Ilko A1 - Zapotoczny, Szczepan A1 - Taubert, Andreas T1 - Surface etching of 3D printed poly(lactic acid) with NaOH BT - a systematic approach JF - Polymers N2 - The article describes a systematic investigation of the effects of an aqueous NaOH treatment of 3D printed poly(lactic acid) (PLA) scaffolds for surface activation. The PLA surface undergoes several morphology changes and after an initial surface roughening, the surface becomes smoother again before the material dissolves. Erosion rates and surface morphologies can be controlled by the treatment. At the same time, the bulk mechanical properties of the treated materials remain unaltered. This indicates that NaOH treatment of 3D printed PLA scaffolds is a simple, yet viable strategy for surface activation without compromising the mechanical stability of PLA scaffolds. KW - surface modification KW - sodium hydroxide etching KW - poly(lactic acid) KW - 3D KW - printing KW - roughness KW - wettability KW - erosion Y1 - 2020 U6 - https://doi.org/10.3390/polym12081711 SN - 2073-4360 VL - 12 IS - 8 PB - MDPI CY - Basel ER - TY - JOUR A1 - Ebel, Kenny A1 - Bald, Ilko T1 - Low-energy (5-20 eV) electron-induced single and double strand breaks in well-defined DNA sequences JF - The journal of physical chemistry letters / American Chemical Society N2 - Ionizing radiation is used in cancer radiation therapy to effectively damage the DNA of tumors. The main damage is due to generation of highly reactive secondary species such as low-energy electrons (LEEs). The accurate quantification of DNA radiation damage of well-defined DNA target sequences in terms of absolute cross sections for LEE-induced DNA strand breaks is possible by the DNA origami technique; however, to date, it is possible only for DNA single strands. In the present work DNA double strand breaks in the DNA sequence 5'-d(CAC)(4)/5'd(GTG)(4) are compared with DNA single strand breaks in the oligonucleotides 5'-d(CAC)(4) and 5'-d(GTG)(4) upon irradiation with LEEs in the energy range from 5 to 20 eV. A maximum of strand break cross section was found around 7 and 10 eV independent of the DNA sequence, indicating that dissociative electron attachment is the underlying mechanism of strand breakage and confirming previous studies using plasmid DNA. Y1 - 2022 U6 - https://doi.org/10.1021/acs.jpclett.2c00684 SN - 1948-7185 VL - 13 IS - 22 SP - 4871 EP - 4876 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Marques, Telma S. A1 - Smialek, Malgorzata A. A1 - Schürmann, Robin A1 - Bald, Ilko A1 - Raposo, Maria A1 - Eden, Sam A1 - Mason, Nigel J. T1 - Decomposition of halogenated nucleobases by surface plasmon resonance excitation of gold nanoparticles JF - The European physical journal : D, Atomic, molecular, optical and plasma physics N2 - Halogenated uracil derivatives are of great interest in modern cancer therapy, either as chemotherapeutics or radiosensitisers depending on their halogen atom. This work applies UV-Vis spectroscopy to study the radiation damage of uracil, 5-bromouracil and 5-fluorouracil dissolved in water in the presence of gold nanoparticles upon irradiation with an Nd:YAG ns-pulsed laser operating at 532 nm at different fluences. Gold nanoparticles absorb light efficiently by their surface plasmon resonance and can significantly damage DNA in their vicinity by an increase of temperature and the generation of reactive secondary species, notably radical fragments and low energy electrons. A recent study using the same experimental approach characterized the efficient laser-induced decomposition of the pyrimidine ring structure of 5-bromouracil mediated by the surface plasmon resonance of gold nanoparticles. The present results show that the presence of irradiated gold nanoparticles decomposes the ring structure of uracil and its halogenated derivatives with similar efficiency. In addition to the fragmentation of the pyrimidine ring, for 5-bromouracil the cleavage of the carbon-halogen bond could be observed, whereas for 5-fluorouracil this reaction channel was inhibited. Locally-released halogen atoms can react with molecular groups within DNA, hence this result indicates a specific mechanism by which doping with 5-bromouracil can enhance DNA damage in the proximity of laser irradiated gold nanoparticles. Y1 - 2020 U6 - https://doi.org/10.1140/epjd/e2020-10208-3 SN - 1434-6060 SN - 1434-6079 VL - 74 IS - 11 PB - Springer CY - New York ER - TY - JOUR A1 - Olejko, Lydia A1 - Bald, Ilko T1 - FRET efficiency and antenna effect in multi-color DNA origami-based light harvesting systems JF - RSC Advances N2 - Artificial light harvesting complexes find applications in artificial photosynthesis, photovoltaics and light harvesting chemical sensors. They are used to enhance the absorption of light of a reaction center which is often represented by a single acceptor. Here, we present different light harvesting systems on DNA origami structures and analyze systematically the light harvesting efficiency. By changing the number and arrangement of different fluorophores (FAM as donor, Cy3 as transmitter and Cy5 as acceptor molecules) the light harvesting efficiency is optimized to create a broadband absorption and to improve the antenna effect 1 (including two energy transfer steps) from 0.02 to 1.58, and the antenna effect 2 (including a single energy transfer step) from 0.04 to 8.7, i.e. the fluorescence emission of the acceptor is significantly higher when the light-harvesting antenna is excited at lower wavelength compared to direct excitation of the acceptor. The channeling of photo energy to the acceptor proceeds by Forster Resonance Energy Transfer (FRET) and we carefully analyze also the FRET efficiency of the different light harvesting systems. Accordingly, the antenna effect can be tuned by modifying the stoichiometry of donor, transmitter and acceptor dyes, whereas the FRET efficiency is mainly governed by the spectroscopic properties of dyes and their distances. Y1 - 2017 U6 - https://doi.org/10.1039/c7ra02114c SN - 2046-2069 VL - 7 IS - 39 SP - 23924 EP - 23934 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Schürmann, Robin Mathis A1 - Bald, Ilko T1 - Real-time monitoring of plasmon induced dissociative electron transfer to the potential DNA radiosensitizer 8-bromoadenine JF - Nanoscale N2 - The excitation of localized surface plasmons in noble metal nanoparticles (NPs) results in different nanoscale effects such as electric field enhancement, the generation of hot electrons and a temperature increase close to the NP surface. These effects are typically exploited in diverse fields such as surface-enhanced Raman scattering (SERS), NP catalysis and photothermal therapy (PTT). Halogenated nucleobases are applied as radiosensitizers in conventional radiation cancer therapy due to their high reactivity towards secondary electrons. Here, we use SERS to study the transformation of 8-bromoadenine ((8Br)A) into adenine on the surface of Au and AgNPs upon irradiation with a low-power continuous wave laser at 532, 633 and 785 nm, respectively. The dissociation of (8Br)A is ascribed to a hot-electron transfer reaction and the underlying kinetics are carefully explored. The reaction proceeds within seconds or even milliseconds. Similar dissociation reactions might also occur with other electrophilic molecules, which must be considered in the interpretation of respective SERS spectra. Furthermore, we suggest that hot-electron transfer induced dissociation of radiosensitizers such as (8Br)A can be applied in the future in PTT to enhance the damage of tumor tissue upon irradiation. Y1 - 2017 U6 - https://doi.org/10.1039/c6nr08695k SN - 2040-3364 SN - 2040-3372 VL - 9 SP - 1951 EP - 1955 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Rackwitz, Jenny A1 - Ranković, Miloš Lj. A1 - Milosavljević, Aleksandar R. A1 - Bald, Ilko T1 - A novel setup for the determination of absolute cross sections for low-energy electron induced strand breaks in oligonucleotides BT - the effect of the radiosensitizer 5-fluorouracil* JF - The European physical journal : D, Atomic, molecular, optical and plasma physics N2 - Low-energy electrons (LEEs) play an important role in DNA radiation damage. Here we present a method to quantify LEE induced strand breakage in well-defined oligonucleotide single strands in terms of absolute cross sections. An LEE irradiation setup covering electron energies <500 eV is constructed and optimized to irradiate DNA origami triangles carrying well-defined oligonucleotide target strands. Measurements are presented for 10.0 and 5.5 eV for different oligonucleotide targets. The determination of absolute strand break cross sections is performed by atomic force microscopy analysis. An accurate fluence determination ensures small margins of error of the determined absolute single strand break cross sections sigma SSB. In this way, the influence of sequence modification with the radiosensitive 5-Fluorouracil (U-5F) is studied using an absolute and relative data analysis. We demonstrate an increase in the strand break yields of U-5F containing oligonucleotides by a factor of 1.5 to 1.6 compared with non-modified oligonucleotide sequences when irradiated with 10 eV electrons. Y1 - 2017 U6 - https://doi.org/10.1140/epjd/e2016-70608-4 SN - 1434-6060 SN - 1434-6079 VL - 71 PB - Springer CY - New York ER - TY - JOUR A1 - Heck, Christian A1 - Prinz, Julia A1 - Dathe, Andre A1 - Merk, Virginia A1 - Stranik, Ondrej A1 - Fritzsche, Wolfgang A1 - Kneipp, Janina A1 - Bald, Ilko T1 - Gold Nanolenses Self-Assembled by DNA Origami JF - ACS Photonics N2 - Nanolenses are self-similar chains of metal nanoparticles, which can theoretically provide extremely high field enhancements. Yet, the complex structure renders their synthesis challenging and has hampered closer analyses so far. Here, DNA origami is used to self-assemble 10, 20, and 60 nm gold nanoparticles as plasmonic gold nanolenses (AuNLs) in solution and in billions of copies. Three different geometrical arrangements are assembled, and for each of the three designs, surface-enhanced Raman scattering (SERS) capabilities of single AuNLs are assessed. For the design which shows the best properties, SERS signals from the two different internal gaps are compared by selectively placing probe dyes. The highest Raman enhancement is found for the gap between the small and medium nanoparticle, which is indicative of a cascaded field enhancement. KW - plasmonics KW - DNA origami KW - SERS KW - nanolenses KW - gold nanoparticles Y1 - 2017 U6 - https://doi.org/10.1021/acsphotonics.6b00946 SN - 2330-4022 VL - 4 SP - 1123 EP - 1130 PB - American Chemical Society CY - Washington ER - TY - GEN A1 - Zühlke, Martin A1 - Meiling, Till Thomas A1 - Roder, Phillip A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Bald, Ilko A1 - Löhmannsröben, Hans-Gerd A1 - Janßen, Traute A1 - Erhard, Marcel A1 - Repp, Alexander T1 - Photodynamic Inactivation of E. coli Bacteria via Carbon Nanodots T2 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - The increasing development of antibiotic resistance in bacteria has been a major problem for years, both in human and veterinary medicine. Prophylactic measures, such as the use of vaccines, are of great importance in reducing the use of antibiotics in livestock. These vaccines are mainly produced based on formaldehyde inactivation. However, the latter damages the recognition elements of the bacterial proteins and thus could reduce the immune response in the animal. An alternative inactivation method developed in this work is based on gentle photodynamic inactivation using carbon nanodots (CNDs) at excitation wavelengths λex > 290 nm. The photodynamic inactivation was characterized on the nonvirulent laboratory strain Escherichia coli K12 using synthesized CNDs. For a gentle inactivation, the CNDs must be absorbed into the cytoplasm of the E. coli cell. Thus, the inactivation through photoinduced formation of reactive oxygen species only takes place inside the bacterium, which means that the outer membrane is neither damaged nor altered. The loading of the CNDs into E. coli was examined using fluorescence microscopy. Complete loading of the bacterial cells could be achieved in less than 10 min. These studies revealed a reversible uptake process allowing the recovery and reuse of the CNDs after irradiation and before the administration of the vaccine. The success of photodynamic inactivation was verified by viability assays on agar. In a homemade flow photoreactor, the fastest successful irradiation of the bacteria could be carried out in 34 s. Therefore, the photodynamic inactivation based on CNDs is very effective. The membrane integrity of the bacteria after irradiation was verified by slide agglutination and atomic force microscopy. The method developed for the laboratory strain E. coli K12 could then be successfully applied to the important avian pathogens Bordetella avium and Ornithobacterium rhinotracheale to aid the development of novel vaccines. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1220 KW - Bacteria KW - Genetics KW - Fluorescence KW - Photodynamics KW - Irradiation Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-538425 SN - 1866-8372 SP - 23742 EP - 23749 PB - Universität Potsdam CY - Potsdam ER - TY - JOUR A1 - Zühlke, Martin A1 - Meiling, Till Thomas A1 - Roder, Phillip A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Bald, Ilko A1 - Löhmannsröben, Hans-Gerd A1 - Janßen, Traute A1 - Erhard, Marcel A1 - Repp, Alexander T1 - Photodynamic inactivation of E. coli bacteria via carbon nanodots JF - ACS omega / American Chemical Society N2 - The increasing development of antibiotic resistance in bacteria has been a major problem for years, both in human and veterinary medicine. Prophylactic measures, such as the use of vaccines, are of great importance in reducing the use of antibiotics in livestock. These vaccines are mainly produced based on formaldehyde inactivation. However, the latter damages the recognition elements of the bacterial proteins and thus could reduce the immune response in the animal. An alternative inactivation method developed in this work is based on gentle photodynamic inactivation using carbon nanodots (CNDs) at excitation wavelengths λex > 290 nm. The photodynamic inactivation was characterized on the nonvirulent laboratory strain Escherichia coli K12 using synthesized CNDs. For a gentle inactivation, the CNDs must be absorbed into the cytoplasm of the E. coli cell. Thus, the inactivation through photoinduced formation of reactive oxygen species only takes place inside the bacterium, which means that the outer membrane is neither damaged nor altered. The loading of the CNDs into E. coli was examined using fluorescence microscopy. Complete loading of the bacterial cells could be achieved in less than 10 min. These studies revealed a reversible uptake process allowing the recovery and reuse of the CNDs after irradiation and before the administration of the vaccine. The success of photodynamic inactivation was verified by viability assays on agar. In a homemade flow photoreactor, the fastest successful irradiation of the bacteria could be carried out in 34 s. Therefore, the photodynamic inactivation based on CNDs is very effective. The membrane integrity of the bacteria after irradiation was verified by slide agglutination and atomic force microscopy. The method developed for the laboratory strain E. coli K12 could then be successfully applied to the important avian pathogens Bordetella avium and Ornithobacterium rhinotracheale to aid the development of novel vaccines. KW - Bacteria KW - Genetics KW - Fluorescence KW - Photodynamics KW - Irradiation Y1 - 2021 U6 - https://doi.org/10.1021/acsomega.1c01700 SN - 2470-1343 VL - 6 IS - 37 SP - 23742 EP - 23749 PB - ACS Publications CY - Washington, DC ER -