TY - JOUR A1 - Reso, Judith ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Protein Classification Workflow JF - Process Design for Natural Scientists: an agile model-driven approach N2 - The protein classification workflow described in this report enables users to get information about a novel protein sequence automatically. The information is derived by different bioinformatic analysis tools which calculate or predict features of a protein sequence. Also, databases are used to compare the novel sequence with known proteins. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 65 EP - 72 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Wickert, Alexander A1 - Margaria, Tiziana ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Lessons Learned JF - Process Design for Natural Scientists: an agile model-driven approach N2 - This chapter summarizes the experience and the lessons we learned concerning the application of the jABC as a framework for design and execution of scientific workflows. It reports experiences from the domain modeling (especially service integration) and workflow design phases and evaluates the resulting models statistically with respect to the SIB library and hierarchy levels. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 45 EP - 64 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Wickert, Alexander ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - The Course's SIB Libraries JF - Process Design for Natural Scientists: an agile model-driven approach N2 - This chapter gives a detailed description of the service framework underlying all the example projects that form the foundation of this book. It describes the different SIB libraries that we made available for the course “Process modeling in the natural sciences” to provide the functionality that was required for the envisaged applications. The students used these SIB libraries to realize their projects. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 30 EP - 44 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Margaria, Tiziana ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Scientific Workflows and XMDD JF - Process Design for Natural Scientists: an agile model-driven approach N2 - A major part of the scientific experiments that are carried out today requires thorough computational support. While database and algorithm providers face the problem of bundling resources to create and sustain powerful computation nodes, the users have to deal with combining sets of (remote) services into specific data analysis and transformation processes. Today’s attention to “big data” amplifies the issues of size, heterogeneity, and process-level diversity/integration. In the last decade, especially workflow-based approaches to deal with these processes have enjoyed great popularity. This book concerns a particularly agile and model-driven approach to manage scientific workflows that is based on the XMDD paradigm. In this chapter we explain the scope and purpose of the book, briefly describe the concepts and technologies of the XMDD paradigm, explain the principal differences to related approaches, and outline the structure of the book. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 1 EP - 13 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Margaria, Tiziana A1 - Steffen, Bernhard ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Modeling and Execution of Scientific Workflows with the jABC Framework JF - Process Design for Natural Scientists: an agile model-driven approach N2 - We summarize here the main characteristics and features of the jABC framework, used in the case studies as a graphical tool for modeling scientific processes and workflows. As a comprehensive environment for service-oriented modeling and design according to the XMDD (eXtreme Model-Driven Design) paradigm, the jABC offers much more than the pure modeling capability. Associated technologies and plugins provide in fact means for a rich variety of supporting functionality, such as remote service integration, taxonomical service classification, model execution, model verification, model synthesis, and model compilation. We describe here in short both the essential jABC features and the service integration philosophy followed in the environment. In our work over the last years we have seen that this kind of service definition and provisioning platform has the potential to become a core technology in interdisciplinary service orchestration and technology transfer: Domain experts, like scientists not specially trained in computer science, directly define complex service orchestrations as process models and use efficient and complex domain-specific tools in a simple and intuitive way. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 14 EP - 29 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Thuan, Tran ED - Grubic, Mira ED - Mucha, Anne T1 - Lone contrastive topic constructions BT - a puzzle from Vietnamese JF - Proceedings of the Semantics of African, Asian and Austronesian Languages (TripleA) 2 N2 - It has been long agreed by formal and functional researchers (primarily based on English data) that contrastive topic marking, namely marking a constituent as a contrastive topic via the B-accent/the rising intonation contour) requires the co-occurrence of focus marking via the A-accent/the falling intonation contour (see Sturgeon 2006, and references therein). However, this consensus has recently been disputed by new findings indicating the occurrence of utterances with only B-accent, dubbed as lone contrastive topic (Büring 2003, Constant 2014). In this paper, I argue, based on the data in Vietnamese, that the presence of lone contrastive topic is just apparent, and that the focus that co-occurs with the seemingly lone contrastive topic is a verum focus. Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-92323 SP - 52 EP - 64 ER - TY - JOUR A1 - Korat, Omer ED - Grubic, Mira ED - Mucha, Anne T1 - Singular quantified terms JF - Proceedings of the Semantics of African, Asian and Austronesian Languages (TripleA) 2 N2 - In this paper, I discuss the behavior of singular partitives, focusing on Hebrew. I show that group noun-headed singular quantified terms behave essentially different from other singular quantified terms. Specifically, the domain of quantification in the former is a discrete set (the members of the group), while in the latter the domain of quantification is a set of mass entities. I propose a preliminary analysis of singular quantified terms in Hebrew, respecting the properties peculiar to this language as well as the observations about group vs. non-group singular quantified terms. This analysis is based on a novel class of quantifiers I name ’Measure Quantifiers’, which instantiate relations between algebraic sums. Using shifts between algebraic sums, we can represent the different readings of singular and plural individual or group terms. Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-92313 SP - 36 EP - 51 ER - TY - JOUR A1 - Hsieh, I-Ta Chris A1 - Shen, Zheng ED - Grubic, Mira ED - Mucha, Anne T1 - The ‘Associative Reading’ of DPs and the quantity vs. quality distinction JF - Proceedings of the Semantics of African, Asian and Austronesian Languages (TripleA) 2 N2 - This paper investigates an unnoticed difference in Mandarin between the Q-adjectives and the gradable adjectives of quality and shows that this observation follows straightforwardly from a theory that differentiates gradable predication of quantity and that of quality (e.g., Rett 2008; Lin 2014; Solt 2015; a.o.). Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-92304 SP - 18 EP - 35 ER - TY - JOUR A1 - Bowler, Margit ED - Grubic, Mira ED - Mucha, Anne T1 - The status of degrees in Warlpiri JF - Proceedings of the Semantics of African, Asian and Austronesian Languages (TripleA) 2 N2 - Recent work in semantics has shown that languages can vary in whether or not they include degrees (that is, elements of type < d >) in their semantic ontology. Several authors have argued that their languages of study lack degrees, including Bochnak (2013) for Washo (isolate, USA), Pearson (2009) for Fijian (Austronesian, Fiji), and Beck, et al. (2009) for Motu (Austronesian, Papua New Guinea). In this paper, I follow the tests proposed in Beck, et al. (2009) to assess the status of degrees in Warlpiri (Pama-Nyungan, Australia). I use Warlpiri data collected following the Beck, et al. survey to argue that Warlpiri gradable predicates do not combine with a degree argument. (Like many other Australian languages, adjectival concepts like big and small are expressed using nouns in Warlpiri (Dixon 1982, Bittner & Hale 1995, among others). I refer to these lexical items as “gradable predicates” in this paper.) This paper represents a first pass at assessing the status of degrees in an Australian language, which have otherwise been unexamined from the point of view of degree semantics. Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-92295 SP - 1 EP - 17 ER - TY - JOUR A1 - Poduzova, Ekaterina T1 - Theses JF - Dritte Woche des Russischen Rechts, Potsdam, 13.–17.10.2014, mit der Moskauer Staatlichen Juristischen O. E. Kutafin Universität (Akademie) JF - Третья неделя российского права, 13.–17.10.2014, с участием Московского государственного юридического университета имени О. E. Кутафина (МГЮА) Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-92015 SN - 978-3-86956-340-4 SN - 2199-9686 SN - 2199-9694 VL - 3 SP - 129 EP - 131 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Poduzova, Ekaterina T1 - Some Basic Aspects Of Organizational Contracts In Modern Contract Law JF - Dritte Woche des Russischen Rechts, Potsdam, 13.–17.10.2014, mit der Moskauer Staatlichen Juristischen O. E. Kutafin Universität (Akademie) JF - Третья неделя российского права, 13.–17.10.2014, с участием Московского государственного юридического университета имени О. E. Кутафина (МГЮА) Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-92008 SN - 978-3-86956-340-4 SN - 2199-9686 SN - 2199-9694 VL - 3 SP - 117 EP - 126 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Bekâŝev, Kamil T1 - Globalization And Development Of International Law JF - Dritte Woche des Russischen Rechts, Potsdam, 13.–17.10.2014, mit der Moskauer Staatlichen Juristischen O. E. Kutafin Universität (Akademie) JF - Третья неделя российского права, 13.–17.10.2014, с участием Московского государственного юридического университета имени О. E. Кутафина (МГЮА) N2 - Theses Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-91896 SN - 978-3-86956-340-4 SN - 2199-9686 SN - 2199-9694 VL - 3 SP - 47 EP - 50 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Nakano, Yoko A1 - Ikemoto, Yu A1 - Jacob, Gunnar A1 - Clahsen, Harald T1 - How Orthography Modulates Morphological Priming BT - Subliminal Kanji Activation in Japanese JF - Frontiers in psychology N2 - The current study investigates to what extent masked morphological priming is modulated by language-particular properties, specifically by its writing system. We present results from two masked priming experiments investigating the processing of complex Japanese words written in less common (moraic) scripts. In Experiment 1, participants performed lexical decisions on target verbs; these were preceded by primes which were either (i) a past-tense form of the same verb, (ii) a stem-related form with the epenthetic vowel -i, (iii) a semantically-related form, and (iv) a phonologically-related form. Significant priming effects were obtained for prime types (i), (ii), and (iii), but not for (iv). This pattern of results differs from previous findings on languages with alphabetic scripts, which found reliable masked priming effects for morphologically related prime/target pairs of type (i), but not for non-affixal and semantically-related primes of types (ii), and (iii). In Experiment 2, we measured priming effects for prime/target pairs which are neither morphologically, semantically, phonologically nor - as presented in their moraic scripts—orthographically related, but which—in their commonly written form—share the same kanji, which are logograms adopted from Chinese. The results showed a significant priming effect, with faster lexical-decision times for kanji-related prime/target pairs relative to unrelated ones. We conclude that affix-stripping is insufficient to account for masked morphological priming effects across languages, but that language-particular properties (in the case of Japanese, the writing system) affect the processing of (morphologically) complex words. KW - morphologically complex words KW - morpho-orthography KW - decompositon KW - Japanese KW - kanji KW - kana Y1 - 2016 U6 - https://doi.org/10.3389/fpsyg.2016.00316 SN - 1664-1078 VL - 7 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Klauschies, Toni A1 - Vasseur, David A. A1 - Gaedke, Ursula T1 - Trait adaptation promotes species coexistence in diverse predator and prey communities JF - Ecology and evolution N2 - Species can adjust their traits in response to selection which may strongly influence species coexistence. Nevertheless, current theory mainly assumes distinct and time-invariant trait values. We examined the combined effects of the range and the speed of trait adaptation on species coexistence using an innovative multispecies predator–prey model. It allows for temporal trait changes of all predator and prey species and thus simultaneous coadaptation within and among trophic levels. We show that very small or slow trait adaptation did not facilitate coexistence because the stabilizing niche differences were not sufficient to offset the fitness differences. In contrast, sufficiently large and fast trait adaptation jointly promoted stable or neutrally stable species coexistence. Continuous trait adjustments in response to selection enabled a temporally variable convergence and divergence of species traits; that is, species became temporally more similar (neutral theory) or dissimilar (niche theory) depending on the selection pressure, resulting over time in a balance between niche differences stabilizing coexistence and fitness differences promoting competitive exclusion. Furthermore, coadaptation allowed prey and predator species to cluster into different functional groups. This equalized the fitness of similar species while maintaining sufficient niche differences among functionally different species delaying or preventing competitive exclusion. In contrast to pre- vious studies, the emergent feedback between biomass and trait dynamics enabled supersaturated coexistence for a broad range of potential trait adaptation and parameters. We conclude that accounting for trait adaptation may explain stable and supersaturated species coexistence for a broad range of environmental conditions in natural systems when the absence of such adaptive changes would preclude it. Small trait changes, coincident with those that may occur within many natural populations, greatly enlarged the number of coexisting species. KW - Coadaptation KW - equalizing and stabilizing mechanisms KW - maintenance of functional diversity KW - niche and fitness differences KW - supersaturated species coexistence KW - trait convergence and divergence Y1 - 2016 U6 - https://doi.org/10.1002/ece3.2172 SN - 2045-7758 PB - John Wiley & Sons, Inc. ER - TY - JOUR A1 - Kurpiers, Jona A1 - Neher, Dieter T1 - Dispersive Non-Geminate Recombination in an Amorphous Polymer:Fullerene Blend JF - Scientific reports N2 - Recombination of free charge is a key process limiting the performance of solar cells. For low mobility materials, such as organic semiconductors, the kinetics of non-geminate recombination (NGR) is strongly linked to the motion of charges. As these materials possess significant disorder, thermalization of photogenerated carriers in the inhomogeneously broadened density of state distribution is an unavoidable process. Despite its general importance, knowledge about the kinetics of NGR in complete organic solar cells is rather limited. We employ time delayed collection field (TDCF) experiments to study the recombination of photogenerated charge in the high-performance polymer:fullerene blend PCDTBT:PCBM. NGR in the bulk of this amorphous blend is shown to be highly dispersive, with a continuous reduction of the recombination coefficient throughout the entire time scale, until all charge carriers have either been extracted or recombined. Rapid, contact-mediated recombination is identified as an additional loss channel, which, if not properly taken into account, would erroneously suggest a pronounced field dependence of charge generation. These findings are in stark contrast to the results of TDCF experiments on photovoltaic devices made from ordered blends, such as P3HT:PCBM, where non-dispersive recombination was proven to dominate the charge carrier dynamics under application relevant conditions. Y1 - 2016 U6 - https://doi.org/10.1038/srep26832 SN - 2045-2322 VL - 6 PB - Nature Publishing Group CY - London ER - TY - JOUR A1 - Kayser, Daniela Niesta A1 - Graupmann, Verena A1 - Fryer, James W. A1 - Frey, Dieter T1 - Threat to Freedom and the Detrimental Effect of Avoidance Goal Frames BT - Reactance as a Mediating Variable JF - Frontiers in psychology N2 - Two experiments examined how individuals respond to a restriction presented within an approach versus an avoidance frame. In Study 1, working on a problem-solving task, participants were initially free to choose their strategy, but for a second task were told to change their strategy. The message to change was embedded in either an approach or avoidance frame. When confronted with an avoidance compared to an approach frame, the participants’ reactance toward the request was greater and, in turn, led to impaired performance. The role of reactance as a response to threat to freedom was explicitly examined in Study 2, in which participants evaluated a potential change in policy affecting their program of study herein explicitly varying whether a restriction was present or absent and whether the message was embedded in an approach versus avoidance frame. When communicated with an avoidance frame and as a restriction, participants showed the highest resistance in terms of reactance, message agreement and evaluation of the communicator. The difference in agreement with the change was mediated by reactance only when a restriction was present. Overall, avoidance goal frames were associated with more resistance to change on different levels of experience (reactance, performance, and person perception). Reactance mediated the effect of goal frame on other outcomes only when a restriction was present. KW - freedom restriction KW - goal frames KW - avoidance KW - approach KW - reactance KW - self threat KW - change Y1 - 2016 U6 - https://doi.org/10.3389/fpsyg.2016.00632 SN - 1664-1078 VL - 7 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Zabel, André A1 - Winter, Alette A1 - Kelling, Alexandra A1 - Schilde, Uwe A1 - Strauch, Peter T1 - Tetrabromidocuprates(II)-Synthesis, Structure and EPR JF - International journal of molecular sciences N2 - Metal-containing ionic liquids (ILs) are of interest for a variety of technical applications, e.g., particle synthesis and materials with magnetic or thermochromic properties. In this paper we report the synthesis of, and two structures for, some new tetrabromidocuprates(II) with several “onium” cations in comparison to the results of electron paramagnetic resonance (EPR) spectroscopic analyses. The sterically demanding cations were used to separate the paramagnetic Cu(II) ions for EPR measurements. The EPR hyperfine structure in the spectra of these new compounds is not resolved, due to the line broadening resulting from magnetic exchange between the still-incomplete separated paramagnetic Cu(II) centres. For the majority of compounds, the principal g values (g|| and gK) of the tensors could be determined and information on the structural changes in the [CuBr4]2- anions can be obtained. The complexes have high potential, e.g., as ionic liquids, as precursors for the synthesis of copper bromide particles, as catalytically active or paramagnetic ionic liquids. KW - tetrabromidocuprate(II) KW - X-ray structure KW - electron paramagnetic resonance KW - copper(II) Y1 - 2016 U6 - https://doi.org/10.3390/ijms17040596 VL - 17 IS - 4 PB - MDPI CY - Basel ER - TY - JOUR A1 - Neher, Dieter A1 - Kniepert, Juliane A1 - Elimelech, Arik A1 - Koster, L. Jan Anton T1 - A New Figure of Merit for Organic Solar Cells with Transport-limited Photocurrents JF - Scientific reports N2 - Compared to their inorganic counterparts, organic semiconductors suffer from relatively low charge carrier mobilities. Therefore, expressions derived for inorganic solar cells to correlate characteristic performance parameters to material properties are prone to fail when applied to organic devices. This is especially true for the classical Shockley-equation commonly used to describe current-voltage (JV)-curves, as it assumes a high electrical conductivity of the charge transporting material. Here, an analytical expression for the JV-curves of organic solar cells is derived based on a previously published analytical model. This expression, bearing a similar functional dependence as the Shockley-equation, delivers a new figure of merit α to express the balance between free charge recombination and extraction in low mobility photoactive materials. This figure of merit is shown to determine critical device parameters such as the apparent series resistance and the fill factor. KW - Electronic and spintronic devices KW - Semiconductors Y1 - 2016 U6 - https://doi.org/10.1038/srep24861 SN - 2045-2322 VL - 6 PB - Nature Publishing Group CY - London ER - TY - JOUR A1 - Yan, Wenhao A1 - Chen, Dijun A1 - Kaufmann, Kerstin T1 - Efficient multiplex mutagenesis by RNA-guided Cas9 and its use in the characterization of regulatory elements in the AGAMOUS gene JF - Plant methods N2 - Background The efficiency of multiplex editing in plants by the RNA-guided Cas9 system is limited by efficient introduction of its components into the genome and by their activity. The possibility of introducing large fragment deletions by RNA-guided Cas9 tool provides the potential to study the function of any DNA region of interest in its ‘endogenous’ environment. Results Here, an RNA-guided Cas9 system was optimized to enable efficient multiplex editing in Arabidopsis thaliana. We demonstrate the flexibility of our system for knockout of multiple genes, and to generate heritable large-fragment deletions in the genome. As a proof of concept, the function of part of the second intron of the flower development gene AGAMOUS in Arabidopsis was studied by generating a Cas9-free mutant plant line in which part of this intron was removed from the genome. Further analysis revealed that deletion of this intron fragment results 40 % decrease of AGAMOUS gene expression without changing the splicing of the gene which indicates that this regulatory region functions as an activator of AGAMOUS gene expression. Conclusions Our modified RNA-guided Cas9 system offers a versatile tool for the functional dissection of coding and non-coding DNA sequences in plants. KW - RNA-guided Cas9 KW - Multiplex mutagenesis KW - Large fragment deletion KW - Germline transmission Y1 - 2016 U6 - https://doi.org/10.1186/s13007-016-0125-7 SN - 1746-4811 VL - 12 SP - 1 EP - 9 PB - BioMed Central CY - London ER - TY - JOUR A1 - Puig-Samper, Miguel Ángel A1 - Garrido, Elisa T1 - The presentation of the results of Alexander von Humboldt's voyage to Carlos IV JF - HiN : Alexander von Humboldt im Netz ; International Review for Humboldtian Studies N2 - Ever since our first research into Alexander von Humboldt's stay in Spain, the absence of an ensuing relationship between the wise Prussian and the Spanish Crown and Authorities had always surprised us. On starting new research, we found that indeed he sent his first work to Carlos IV from Rome accompanied by a letter of gratitude for the protection he had received during his American trip and submission to the Spanish Crown, which we now present. This first literary fruit of his voyage, which Alexander von Humboldt alluded to in the letter is the first instalment of his work Plantes Équinoxiales, Recueillies au Mexique, dans l’ile de Cuba, dans les provinces de Caracas, de Cumana etc., published in Paris in 1805. N2 - Desde nuestras primeras investigaciones sobre la estancia de Alexander von Humboldt en España siempre nos sorprendió la ausencia de una mínima relación posterior del sabio prusiano con la corona española y sus autoridades. Iniciada una nueva investigación, encontramos que efectivamente se produjo el envío de un primer trabajo a Carlos IV desde Roma acompañado de una carta de gratitud por la protección recibida durante su viaje americano y de sumisión a la corona española, que ahora presentamos. N2 - Seit unseren ersten Forschungen über den Aufenthalt Alexander von Humboldts in Spanien hat uns das Fehlen einer hieran anschließenden Beziehung des preußischen Wissenschaftlers mit der spanischen Krone und ihren Behörden erstaunt. Im Laufe einer erneuten Aufnahme der Forschung, haben wir nun entdeckt, dass Humboldt in der Tat von Rom aus eine erste Arbeit an Karl IV gesandt hatte, zusammen mit einem Schreiben des Dankes (für den während der amerikanischen Reise) erhaltenen Schutz sowie seiner Unterordnung unter die spanische Krone, das wir nun präsentieren. Das erste literarische Ergebnis seiner Reise, auf das Humboldt in diesem Brief verweist, ist der erste Faszikel seines Werkes Plantes Équinoxiales, Recueillies au Mexique, dans l’ile de Cuba, dans les provinces de Caracas, de Cumana etc., das im Jahr 1805 in Paris publiziert wurde. KW - Humboldt KW - travel results KW - Plantes Équinoxiales KW - Carlos IV KW - Spain Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-90788 SN - 1617-5239 SN - 2568-3543 VL - XVII IS - 32 SP - 52 EP - 64 PB - Universitätsverlag Potsdam CY - Potsdam ER -