TY - GEN A1 - Wickert, Andrew D. T1 - Open-source modular solutions for flexural isostasy BT - gFlex v1.0 T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Isostasy is one of the oldest and most widely applied concepts in the geosciences, but the geoscientific community lacks a coherent, easy-to-use tool to simulate flexure of a realistic (i.e., laterally heterogeneous) lithosphere under an arbitrary set of surface loads. Such a model is needed for studies of mountain building, sedimentary basin formation, glaciation, sea-level change, and other tectonic, geodynamic, and surface processes. Here I present gFlex (for GNU flexure), an open-source model that can produce analytical and finite difference solutions for lithospheric flexure in one (profile) and two (map view) dimensions. To simulate the flexural isostatic response to an imposed load, it can be used by itself or within GRASS GIS for better integration with field data. gFlex is also a component with the Community Surface Dynamics Modeling System (CSDMS) and Landlab modeling frameworks for coupling with a wide range of Earth-surface-related models, and can be coupled to additional models within Python scripts. As an example of this in-script coupling, I simulate the effects of spatially variable lithospheric thickness on a modeled Iceland ice cap. Finite difference solutions in gFlex can use any of five types of boundary conditions: 0-displacement, 0-slope (i.e., clamped); 0-slope, 0-shear; 0-moment, 0-shear (i.e., broken plate); mirror symmetry; and periodic. Typical calculations with gFlex require << 1 s to similar to 1 min on a personal laptop computer. These characteristics - multiple ways to run the model, multiple solution methods, multiple boundary conditions, and short compute time - make gFlex an effective tool for flexural isostatic modeling across the geosciences. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 498 KW - EFFECTIVE ELASTIC THICKNESS KW - postglacial sea-level KW - oceanic lithospere KW - ice-sheet KW - spatial variations KW - gravity-anomalies KW - mountain-ranges KW - Lake Bonneville KW - heat-flow KW - model Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408366 SN - 1866-8372 IS - 498 ER - TY - GEN A1 - Siegmund, Jonatan Frederik A1 - Wiedermann, Marc A1 - Donges, Jonathan A1 - Donner, Reik Volker T1 - Impact of temperature and precipitation extremes on the flowering dates of four German wildlife shrub species T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Ongoing climate change is known to cause an increase in the frequency and amplitude of local temperature and precipitation extremes in many regions of the Earth. While gradual changes in the climatological conditions have already been shown to strongly influence plant flowering dates, the question arises if and how extremes specifically impact the timing of this important phenological phase. Studying this question calls for the application of statistical methods that are tailored to the specific properties of event time series. Here, we employ event coincidence analysis, a novel statistical tool that allows assessing whether or not two types of events exhibit similar sequences of occurrences in order to systematically quantify simultaneities between meteorological extremes and the timing of the flowering of four shrub species across Germany. Our study confirms previous findings of experimental studies by highlighting the impact of early spring temperatures on the flowering of the investigated plants. However, previous studies solely based on correlation analysis do not allow deriving explicit estimates of the strength of such interdependencies without further assumptions, a gap that is closed by our analysis. In addition to direct impacts of extremely warm and cold spring temperatures, our analysis reveals statistically significant indications of an influence of temperature extremes in the autumn preceding the flowering. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 497 KW - event coincidence analysis KW - climate-change KW - weather extremes KW - plant phenology KW - interannual variability KW - air-temperature KW - responses KW - drought KW - trends KW - summer Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408352 SN - 1866-8372 IS - 497 ER - TY - GEN A1 - Burnecki, Krzysztof A1 - Wylomanska, Agnieszka A1 - Chechkin, Aleksei V. T1 - Discriminating between light- and heavy-tailed distributions with limit theorem T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - In this paper we propose an algorithm to distinguish between light- and heavy-tailed probability laws underlying random datasets. The idea of the algorithm, which is visual and easy to implement, is to check whether the underlying law belongs to the domain of attraction of the Gaussian or non-Gaussian stable distribution by examining its rate of convergence. The method allows to discriminate between stable and various non-stable distributions. The test allows to differentiate between distributions, which appear the same according to standard Kolmogorov-Smirnov test. In particular, it helps to distinguish between stable and Student's t probability laws as well as between the stable and tempered stable, the cases which are considered in the literature as very cumbersome. Finally, we illustrate the procedure on plasma data to identify cases with so-called L-H transition. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 495 KW - levy fight KW - statistical-analysis KW - fractional dynamics KW - stochastic-process KW - edge turbulence KW - scaling laws KW - stable laws KW - power-law KW - convergence KW - fluctuations Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408172 SN - 1866-8372 IS - 495 ER - TY - GEN A1 - Murawski, Aline A1 - Bürger, Gerd A1 - Vorogushyn, Sergiy A1 - Merz, Bruno T1 - Can local climate variability be explained by weather patterns? BT - a multi-station evaluation for the Rhine basin T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - To understand past flood changes in the Rhine catchment and in particular the role of anthropogenic climate change in extreme flows, an attribution study relying on a proper GCM (general circulation model) downscaling is needed. A downscaling based on conditioning a stochastic weather generator on weather patterns is a promising approach. This approach assumes a strong link between weather patterns and local climate, and sufficient GCM skill in reproducing weather pattern climatology. These presuppositions are unprecedentedly evaluated here using 111 years of daily climate data from 490 stations in the Rhine basin and comprehensively testing the number of classification parameters and GCM weather pattern characteristics. A classification based on a combination of mean sea level pressure, temperature, and humidity from the ERA20C reanalysis of atmospheric fields over central Europe with 40 weather types was found to be the most appropriate for stratifying six local climate variables. The corresponding skill is quite diverse though, ranging from good for radiation to poor for precipitation. Especially for the latter it was apparent that pressure fields alone cannot sufficiently stratify local variability. To test the skill of the latest generation of GCMs from the CMIP5 ensemble in reproducing the frequency, seasonality, and persistence of the derived weather patterns, output from 15 GCMs is evaluated. Most GCMs are able to capture these characteristics well, but some models showed consistent deviations in all three evaluation criteria and should be excluded from further attribution analysis. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 525 KW - athmospheric circulation patterns KW - stochastic rainfall model KW - within-type variability KW - river Rhine KW - precipitation KW - temperature KW - trends KW - classification KW - Europe KW - scenarios Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-410155 SN - 1866-8372 IS - 525 ER - TY - GEN A1 - Mysiak, Jaroslav A1 - Surminski, Swenja A1 - Thieken, Annegret A1 - Mechler, Reinhard A1 - Aerts, Jeroen C. J. H. T1 - Brief communication BT - Sendai framework for disaster risk reduction - success or warning sign for Paris? T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - In March 2015, a new international blueprint for disaster risk reduction (DRR) was adopted in Sendai, Japan, at the end of the Third UN World Conference on Disaster Risk Reduction (WCDRR, 14-18 March 2015). We review and discuss the agreed commitments and targets, as well as the negotiation leading the Sendai Framework for DRR (SF-DRR) and discuss briefly its implication for the later UN-led negotiations on sustainable development goals and climate change. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 524 Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-410149 SN - 1866-8372 IS - 524 ER - TY - GEN A1 - Sonnemann, Ilja A1 - Pfestorf, Hans A1 - Jeltsch, Florian A1 - Wurst, Susanne T1 - Community- weighted mean plant traits predict small scale distribution of insect root herbivore abundance T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Small scale distribution of insect root herbivores may promote plant species diversity by creating patches of different herbivore pressure. However, determinants of small scale distribution of insect root herbivores, and impact of land use intensity on their small scale distribution are largely unknown. We sampled insect root herbivores and measured vegetation parameters and soil water content along transects in grasslands of different management intensity in three regions in Germany. We calculated community-weighted mean plant traits to test whether the functional plant community composition determines the small scale distribution of insect root herbivores. To analyze spatial patterns in plant species and trait composition and insect root herbivore abundance we computed Mantel correlograms. Insect root herbivores mainly comprised click beetle (Coleoptera, Elateridae) larvae (43%) in the investigated grasslands. Total insect root herbivore numbers were positively related to community-weighted mean traits indicating high plant growth rates and biomass (specific leaf area, reproductive-and vegetative plant height), and negatively related to plant traits indicating poor tissue quality (leaf C/N ratio). Generalist Elaterid larvae, when analyzed independently, were also positively related to high plant growth rates and furthermore to root dry mass, but were not related to tissue quality. Insect root herbivore numbers were not related to plant cover, plant species richness and soil water content. Plant species composition and to a lesser extent plant trait composition displayed spatial autocorrelation, which was not influenced by land use intensity. Insect root herbivore abundance was not spatially autocorrelated. We conclude that in semi-natural grasslands with a high share of generalist insect root herbivores, insect root herbivores affiliate with large, fast growing plants, presumably because of availability of high quantities of food. Affiliation of insect root herbivores with large, fast growing plants may counteract dominance of those species, thus promoting plant diversity. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 494 KW - Diabrotica Virgifera Virgifera KW - land-use intensity KW - functional traits KW - wireworms coloptera KW - spatial-distribution KW - Agriotes Ustulatus KW - population-dynamics KW - grassland diversity KW - european flora KW - arable land Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408161 SN - 1866-8372 IS - 494 ER - TY - GEN A1 - Fritz, Michael A1 - Opel, Thomas A1 - Tanski, George A1 - Herzschuh, Ulrike A1 - Meyer, Hanno A1 - Eulenburg, A. A1 - Lantuit, Hugues T1 - Dissolved organic carbon (DOC) in Arctic ground ice T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Thermal permafrost degradation and coastal erosion in the Arctic remobilize substantial amounts of organic carbon (OC) and nutrients which have accumulated in late Pleistocene and Holocene unconsolidated deposits. Permafrost vulnerability to thaw subsidence, collapsing coastlines and irreversible landscape change are largely due to the presence of large amounts of massive ground ice such as ice wedges. However, ground ice has not, until now, been considered to be a source of dissolved organic carbon (DOC), dissolved inorganic carbon (DIC) and other elements which are important for ecosystems and carbon cycling. Here we show, using biogeochemical data from a large number of different ice bodies throughout the Arctic, that ice wedges have the greatest potential for DOC storage, with a maximum of 28.6 mg L-1 (mean: 9.6 mg L-1). Variation in DOC concentration is positively correlated with and explained by the concentrations and relative amounts of typically terrestrial cations such as Mg2+ and K+. DOC sequestration into ground ice was more effective during the late Pleistocene than during the Holocene, which can be explained by rapid sediment and OC accumulation, the prevalence of more easily degradable vegetation and immediate incorporation into permafrost. We assume that pristine snowmelt is able to leach considerable amounts of well-preserved and highly bioavailable DOC as well as other elements from surface sediments, which are rapidly frozen and stored in ground ice, especially in ice wedges, even before further degradation. We found that ice wedges in the Yedoma region represent a significant DOC (45.2 Tg) and DIC (33.6 Tg) pool in permafrost areas and a freshwater reservoir of 4200 km(2). This study underlines the need to discriminate between particulate OC and DOC to assess the availability and vulnerability of the permafrost car-bon pool for ecosystems and climate feedback upon mobilization. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 493 KW - last glacial maximum KW - Beaufort Sea coast KW - Cape Mamontov Klyk KW - permafrost carbon KW - Laptev Sea KW - Lyakhovsky Island KW - climate-change KW - old carbon KW - hologene KW - Siberia Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408155 SN - 1866-8372 IS - 493 ER - TY - GEN A1 - Prahl, Boris F. A1 - Rybski, Diego A1 - Burghoff, Olaf A1 - Kropp, Jürgen T1 - Comparison of storm damage functions and their performance T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Winter storms are the most costly natural hazard for European residential property. We compare four distinct storm damage functions with respect to their forecast accuracy and variability, with particular regard to the most severe winter storms. The analysis focuses on daily loss estimates under differing spatial aggregation, ranging from district to country level. We discuss the broad and heavily skewed distribution of insured losses posing difficulties for both the calibration and the evaluation of damage functions. From theoretical considerations, we provide a synthesis between the frequently discussed cubic wind–damage relationship and recent studies that report much steeper damage functions for European winter storms. The performance of the storm loss models is evaluated for two sources of wind gust data, direct observations by the German Weather Service and ERA-Interim reanalysis data. While the choice of gust data has little impact on the evaluation of German storm loss, spatially resolved coefficients of variation reveal dependence between model and data choice. The comparison shows that the probabilistic models by Heneka et al. (2006) and Prahl et al. (2012) both provide accurate loss predictions for moderate to extreme losses, with generally small coefficients of variation. We favour the latter model in terms of model applicability. Application of the versatile deterministic model by Klawa and Ulbrich (2003) should be restricted to extreme loss, for which it shows the least bias and errors comparable to the probabilistic model by Prahl et al. (2012). T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 492 KW - integrated kinetic-energy KW - residential structures KW - risk-assessment KW - wind speeds KW - data series KW - model KW - buildings KW - climate KW - losses KW - homogenization Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408119 SN - 1866-8372 IS - 492 ER - TY - GEN A1 - Fritz, Michael A1 - Deshpande, B. N. A1 - Bouchard, F. A1 - Högström, E. A1 - Malenfant-Lepage, J. A1 - Morgenstern, Anne A1 - Nieuwendam, A. A1 - Oliva, M. A1 - Paquette, M. A1 - Rudy, A. C. A. A1 - Siewert, M. B. A1 - Sjöberg, Y. A1 - Weege, Stefanie T1 - Brief communication BT - Future avenues for permafrost science from the perspective of early career researchers T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - Accelerating climate change and increased economic and environmental interests in permafrost-affected regions have resulted in an acute need for more directed permafrost research. In June 2014, 88 early career researchers convened to identify future priorities for permafrost research. This multidisciplinary forum concluded that five research topics deserve greatest attention: permafrost landscape dynamics, permafrost thermal modeling, integration of traditional knowledge, spatial distribution of ground ice, and engineering issues. These topics underline the need for integrated research across a spectrum of permafrost-related domains and constitute a contribution to the Third International Conference on Arctic Research Planning (ICARP III). T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 490 KW - association Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408096 SN - 1866-8372 IS - 490 ER - TY - GEN A1 - Pohl, Madlen A1 - Hoffmann, M. A1 - Hagemann, Ulrike A1 - Giebels, M. A1 - Albiac Borraz, E. A1 - Sommer, Michael A1 - Augustin, Jürgen T1 - Dynamic C and N stocks BT - key factors controlling the C gas exchange of maize in heterogenous peatland T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - The drainage and cultivation of fen peatlands create complex small-scale mosaics of soils with extremely variable soil organic carbon (SOC) stocks and groundwater levels (GWLs). To date, the significance of such sites as sources or sinks for greenhouse gases such as CO2 and CH4 is still unclear, especially if the sites are used for cropland. As individual control factors such as GWL fail to account for this complexity, holistic approaches combining gas fluxes with the underlying processes are required to understand the carbon (C) gas exchange of drained fens. It can be assumed that the stocks of SOC and N located above the variable GWL - defined as dynamic C and N stocks - play a key role in the regulation of the plant- and microbially mediated CO2 fluxes in these soils and, inversely, for CH4. To test this assumption, the present study analysed the C gas exchange (gross primary production - GPP; ecosystem respiration - R-eco; net ecosystem exchange - NEE; CH4) of maize using manual chambers for 4 years. The study sites were located near Paulinenaue, Germany, where we selected three soil types representing the full gradient of GWL and SOC stocks (0-1 m) of the landscape: (a) Haplic Arenosol (AR; 8 kg C m(-2)); (b) Mollic Gleysol (GL; 38 kg C m(-2)); and (c) Hemic Histosol (HS; 87 kg C m(-2)). Daily GWL data were used to calculate dynamic SOC (SOCdyn) and N (N-dyn) stocks. Average annual NEE differed considerably among sites, ranging from 47 +/- 30 g C m(-2) yr(-1) in AR to -305 +/- 123 g C m(-2) yr(-1) in GL and -127 +/- 212 g C m(-2) yr(-1) in HS. While static SOC and N stocks showed no significant effect on C fluxes, SOCdyn and N-dyn and their interaction with GWL strongly influenced the C gas exchange, particularly NEE and the GPP : R-eco ratio. Moreover, based on nonlinear regression analysis, 86% of NEE variability was explained by GWL and SOCdyn. The observed high relevance of dynamic SOC and N stocks in the aerobic zone for plant and soil gas exchange likely originates from the effects of GWL-dependent N availability on C formation and transformation processes in the plant-soil system, which promote CO2 input via GPP more than CO2 emission via R-eco. The process-oriented approach of dynamic C and N stocks is a promising, potentially generalisable method for system-oriented investigations of the C gas exchange of groundwater-influenced soils and could be expanded to other nutrients and soil characteristics. However, in order to assess the climate impact of arable sites on drained peatlands, it is always necessary to consider the entire range of groundwater-influenced mineral and organic soils and their respective areal extent within the soil landscape. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 496 KW - soil organic-matter KW - Zea-mays L. KW - term management impacts KW - carbon-dioxide exchange KW - net ecosystem exchange KW - nitrogen-fertilization KW - water-table KW - northeast germany KW - CO2 fluxes KW - mineral fertilization Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408184 SN - 1866-8372 IS - 496 ER - TY - GEN A1 - Reeg, Jette A1 - Heine, Simon A1 - Mihan, Christine A1 - McGee, Sean A1 - Preuss, Thomas G. A1 - Jeltsch, Florian T1 - Simulation of herbicide impacts on a plant community BT - comparing model predictions of the plant community model IBC-grass to empirical data T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Background Semi-natural plant communities such as field boundaries play an important ecological role in agricultural landscapes, e.g., provision of refuge for plant and other species, food web support or habitat connectivity. To prevent undesired effects of herbicide applications on these communities and their structure, the registration and application are regulated by risk assessment schemes in many industrialized countries. Standardized individual-level greenhouse experiments are conducted on a selection of crop and wild plant species to characterize the effects of herbicide loads potentially reaching off-field areas on non-target plants. Uncertainties regarding the protectiveness of such approaches to risk assessment might be addressed by assessment factors that are often under discussion. As an alternative approach, plant community models can be used to predict potential effects on plant communities of interest based on extrapolation of the individual-level effects measured in the standardized greenhouse experiments. In this study, we analyzed the reliability and adequacy of the plant community model IBC-grass (individual-based plant community model for grasslands) by comparing model predictions with empirically measured effects at the plant community level. Results We showed that the effects predicted by the model IBC-grass were in accordance with the empirical data. Based on the species-specific dose responses (calculated from empirical effects in monocultures measured 4 weeks after application), the model was able to realistically predict short-term herbicide impacts on communities when compared to empirical data. Conclusion The results presented in this study demonstrate an approach how the current standard greenhouse experiments—measuring herbicide impacts on individual-level—can be coupled with the model IBC-grass to estimate effects on plant community level. In this way, it can be used as a tool in ecological risk assessment. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 528 KW - Plant community model KW - Non-target terrestrial plants KW - Community-level effects KW - Herbicide risk assessment KW - Individual-based modeling Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-423039 SN - 1866-8372 IS - 528 ER - TY - GEN A1 - Molina-Garcia, Daniel A1 - Sandev, Trifce A1 - Safdari, Hadiseh A1 - Pagnini, Gianni A1 - Chechkin, Aleksei V. A1 - Metzler, Ralf T1 - Crossover from anomalous to normal diffusion BT - truncated power-law noise correlations and applications to dynamics in lipid bilayers T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Abstract The emerging diffusive dynamics in many complex systems show a characteristic crossover behaviour from anomalous to normal diffusion which is otherwise fitted by two independent power-laws. A prominent example for a subdiffusive–diffusive crossover are viscoelastic systems such as lipid bilayer membranes, while superdiffusive–diffusive crossovers occur in systems of actively moving biological cells. We here consider the general dynamics of a stochastic particle driven by so-called tempered fractional Gaussian noise, that is noise with Gaussian amplitude and power-law correlations, which are cut off at some mesoscopic time scale. Concretely we consider such noise with built-in exponential or power-law tempering, driving an overdamped Langevin equation (fractional Brownian motion) and fractional Langevin equation motion. We derive explicit expressions for the mean squared displacement and correlation functions, including different shapes of the crossover behaviour depending on the concrete tempering, and discuss the physical meaning of the tempering. In the case of power-law tempering we also find a crossover behaviour from faster to slower superdiffusion and slower to faster subdiffusion. As a direct application of our model we demonstrate that the obtained dynamics quantitatively describes the subdiffusion–diffusion and subdiffusion–subdiffusion crossover in lipid bilayer systems. We also show that a model of tempered fractional Brownian motion recently proposed by Sabzikar and Meerschaert leads to physically very different behaviour with a seemingly paradoxical ballistic long time scaling. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 507 KW - anomalous diffusion KW - truncated power-law correlated noise KW - lipid bilayer membrane dynamics Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-422590 SN - 1866-8372 IS - 507 ER - TY - GEN A1 - Rodil, Iván F. A1 - Jaramillo, Eduardo A1 - Hubbard, David M. A1 - Dugan, Jenifer E. A1 - Melnick, Daniel A1 - Velasquez, Carlos T1 - Responses of dune plant communities to continental uplift from a major earthquake BT - sudden releases from coastal squeeze T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - Vegetated dunes are recognized as important natural barriers that shelter inland ecosystems and coastlines suffering daily erosive impacts of the sea and extreme events, such as tsunamis. However, societal responses to erosion and shoreline retreat often result in man-made coastal defence structures that cover part of the intertidal and upper shore zones causing coastal squeeze and habitat loss, especially for upper shore biota, such as dune plants. Coseismic uplift of up to 2.0 m on the Peninsula de Arauco (South central Chile, ca. 37.5 degrees S) caused by the 2010 Maule earthquake drastically modified the coastal landscape, including major increases in the width of uplifted beaches and the immediate conversion of mid to low sandy intertidal habitat to supralittoral sandy habitat above the reach of average tides and waves. To investigate the early stage responses in species richness, cover and across-shore distribution of the hitherto absent dune plants, we surveyed two formerly intertidal armoured sites and a nearby intertidal unarmoured site on a sandy beach located on the uplifted coast of Llico (Peninsula de Arauco) over two years. Almost 2 years after the 2010 earthquake, dune plants began to recruit, then rapidly grew and produced dune hummocks in the new upper beach habitats created by uplift at the three sites. Initial vegetation responses were very similar among sites. However, over the course of the study, the emerging vegetated dunes of the armoured sites suffered a slowdown in the development of the spatial distribution process, and remained impoverished in species richness and cover compared to the unarmoured site. Our results suggest that when released from the effects of coastal squeeze, vegetated dunes can recover without restoration actions. However, subsequent human activities and management of newly created beach and dune habitats can significantly alter the trajectory of vegetated dune development. Management that integrates the effects of natural and human induced disturbances, and promotes the development of dune vegetation as natural barriers can provide societal and conservation benefits in coastal ecosystems. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 516 KW - Chile earthquake KW - sandy-beach KW - New-Zealand KW - salt spray KW - vegetation KW - conservation KW - disturbance KW - protection KW - habitats KW - zonation Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-409629 SN - 1866-8372 IS - 516 ER - TY - GEN A1 - Kienzler, Sarah A1 - Pech, I. A1 - Kreibich, Heidi A1 - Müller, M. A1 - Thieken, Annegret T1 - After the extreme flood in 2002 BT - changes in preparedness, response and recovery of flood-affected residents in Germany between 2005 and 2011 T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - In the aftermath of the severe flooding in Central Europe in August 2002, a number of changes in flood policies were launched in Germany and other European countries, aiming at improved risk management. The question arises as to whether these changes have already had an impact on the residents' ability to cope with floods, and whether flood-affected private households are now better prepared than they were in 2002. Therefore, computer-aided telephone interviews with private households in Germany that suffered from property damage due to flooding in 2005, 2006, 2010 or 2011 were performed and analysed with respect to flood awareness, precaution, preparedness and recovery. The data were compared to a similar investigation conducted after the flood in 2002. After the flood in 2002, the level of private precautions taken increased considerably. One contributing factor is the fact that, in general, a larger proportion of people knew that they were at risk of flooding. The best level of precaution was found before the flood events in 2006 and 2011. The main reason for this might be that residents had more experience with flooding than residents affected in 2005 or 2010. Yet, overall, flood experience and knowledge did not necessarily result in building retrofitting or flood-proofing measures, which are considered as mitigating damages most effectively. Hence, investments still need to be stimulated in order to reduce future damage more efficiently. Early warning and emergency responses were substantially influenced by flood characteristics. In contrast to flood-affected people in 2006 or 2011, people affected by flooding in 2005 or 2010 had to deal with shorter lead times and therefore had less time to take emergency measures. Yet, the lower level of emergency measures taken also resulted from the people's lack of flood experience and insufficient knowledge of how to protect themselves. Overall, it was noticeable that these residents suffered from higher losses. Therefore, it is important to further improve early warning systems and communication channels, particularly in hilly areas with rapid-onset flooding. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 488 KW - mitigation behavior KW - private households KW - risk perceptions KW - damage KW - motivation KW - people Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408056 SN - 1866-8372 IS - 488 SP - 505 EP - 526 ER - TY - GEN A1 - Paijmans, Johanna L. A. A1 - Barlow, Axel A1 - Förster, Daniel W. A1 - Henneberger, Kirstin A1 - Meyer, Matthias A1 - Nickel, Birgit A1 - Nagel, Doris A1 - Worsøe Havmøller, Rasmus A1 - Baryshnikov, Gennady F. A1 - Joger, Ulrich A1 - Rosendahl, Wilfried A1 - Hofreiter, Michael T1 - Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Background Resolving the historical biogeography of the leopard (Panthera pardus) is a complex issue, because patterns inferred from fossils and from molecular data lack congruence. Fossil evidence supports an African origin, and suggests that leopards were already present in Eurasia during the Early Pleistocene. Analysis of DNA sequences however, suggests a more recent, Middle Pleistocene shared ancestry of Asian and African leopards. These contrasting patterns led researchers to propose a two-stage hypothesis of leopard dispersal out of Africa: an initial Early Pleistocene colonisation of Asia and a subsequent replacement by a second colonisation wave during the Middle Pleistocene. The status of Late Pleistocene European leopards within this scenario is unclear: were these populations remnants of the first dispersal, or do the last surviving European leopards share more recent ancestry with their African counterparts? Results In this study, we generate and analyse mitogenome sequences from historical samples that span the entire modern leopard distribution, as well as from Late Pleistocene remains. We find a deep bifurcation between African and Eurasian mitochondrial lineages (~ 710 Ka), with the European ancient samples as sister to all Asian lineages (~ 483 Ka). The modern and historical mainland Asian lineages share a relatively recent common ancestor (~ 122 Ka), and we find one Javan sample nested within these. Conclusions The phylogenetic placement of the ancient European leopard as sister group to Asian leopards suggests that these populations originate from the same out-of-Africa dispersal which founded the Asian lineages. The coalescence time found for the mitochondrial lineages aligns well with the earliest undisputed fossils in Eurasia, and thus encourages a re-evaluation of the identification of the much older putative leopard fossils from the region. The relatively recent ancestry of all mainland Asian leopard lineages suggests that these populations underwent a severe population bottleneck during the Pleistocene. Finally, although only based on a single sample, the unexpected phylogenetic placement of the Javan leopard could be interpreted as evidence for exchange of mitochondrial lineages between Java and mainland Asia, calling for further investigation into the evolutionary history of this subspecies. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 505 KW - Ancient DNA KW - Hybridisation capture KW - Leopards KW - Mitochondrial genomes KW - Mitogenomes KW - mtDNA KW - Palaeogenetics KW - Panthera pardus Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-422555 SN - 1866-8372 IS - 505 ER - TY - GEN A1 - Pradhan, Prajal A1 - Fischer, Günther A1 - Velthuizen, Harrij van A1 - Reusser, Dominik Edwin A1 - Kropp, Jürgen T1 - Closing yield gaps BT - how sustainable can we be? T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Global food production needs to be increased by 60-110% between 2005 and 2050 to meet growing food and feed demand. Intensification and/or expansion of agriculture are the two main options available to meet the growing crop demands. Land conversion to expand cultivated land increases GHG emissions and impacts biodiversity and ecosystem services. Closing yield gaps to attain potential yields may be a viable option to increase the global crop production. Traditional methods of agricultural intensification often have negative externalities. Therefore, there is a need to explore location-specific methods of sustainable agricultural intensification. We identified regions where the achievement of potential crop calorie production on currently cultivated land will meet the present and future food demand based on scenario analyses considering population growth and changes in dietary habits. By closing yield gaps in the current irrigated and rain-fed cultivated land, about 24% and 80% more crop calories can respectively be produced compared to 2000. Most countries will reach food self-sufficiency or improve their current food self-sufficiency levels if potential crop production levels are achieved. As a novel approach, we defined specific input and agricultural management strategies required to achieve the potential production by overcoming biophysical and socioeconomic constraints causing yield gaps. The management strategies include: fertilizers, pesticides, advanced soil management, land improvement, management strategies coping with weather induced yield variability, and improving market accessibility. Finally, we estimated the required fertilizers (N, P2O5, and K2O) to attain the potential yields. Globally, N-fertilizer application needs to increase by 45-73%, P2O5-fertilizer by 22-46%, and K2O-fertilizer by 2-3 times compared to the year 2010 to attain potential crop production. The sustainability of such agricultural intensification largely depends on the way management strategies for closing yield gaps are chosen and implemented. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 491 KW - climate-change KW - management KW - intensification KW - productivity KW - agriculture Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408105 SN - 1866-8372 IS - 491 ER - TY - GEN A1 - Hoffmann, Linda Sarah A1 - Kretschmer, Axel A1 - Lawrenz, Bettina A1 - Hocher, Berthold A1 - Stasch, Johannes-Peter T1 - Chronic activation of heme free Guanylate Cyclase leads to renal protection in Dahl salt-sensitive rats T2 - Postprints der Universität Potsdam : Mathematisch naturwissenschaftliche Reihe N2 - The nitric oxide (NO)/soluble guanylate cyclase (sGC)/cyclic guanosine monophasphate (cGMP)-signalling pathway is impaired under oxidative stress conditions due to oxidation and subsequent loss of the prosthetic sGC heme group as observed in particular in chronic renal failure. Thus, the pool of heme free sGC is increased under pathological conditions. sGC activators such as cinaciguat selectively activate the heme free form of sGC and target the disease associated enzyme. In this study, a therapeutic effect of long-term activation of heme free sGC by the sGC activator cinaciguat was investigated in an experimental model of salt-sensitive hypertension, a condition that is associated with increased oxidative stress, heme loss from sGC and development of chronic renal failure. For that purpose Dahl/ss rats, which develop severe hypertension upon high salt intake, were fed a high salt diet (8% NaCl) containing either placebo or cinaciguat for 21 weeks. Cinaciguat markedly improved survival and ameliorated the salt-induced increase in blood pressure upon treatment with cinaciguat compared to placebo. Renal function was significantly improved in the cinaciguat group compared to the placebo group as indicated by a significantly improved glomerular filtration rate and reduced urinary protein excretion. This was due to anti-fibrotic and antiinflammatory effects of the cinaciguat treatment. Taken together, this is the first study showing that long-term activation of heme free sGC leads to renal protection in an experimental model of hypertension and chronic kidney disease. These results underline the promising potential of cinaciguat to treat renal diseases by targeting the disease associated heme free form of sGC. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 489 KW - signal-transduction system KW - nitric-oxide KW - oxidative stress KW - independent activation KW - endothelial dysfunction KW - pulmonary-hypertension KW - cardiovascular-disease KW - therapeutic target KW - heart-failure KW - cyclic-GMP Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408088 SN - 1866-8372 IS - 489 ER - TY - GEN A1 - Marc, Odin A1 - Hovius, Niels T1 - Amalgamation in landslide maps BT - effects and automatic detection T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Inventories of individually delineated landslides are a key to understanding landslide physics and mitigating their impact. They permit assessment of area–frequency distributions and landslide volumes, and testing of statistical correlations between landslides and physical parameters such as topographic gradient or seismic strong motion. Amalgamation, i.e. the mapping of several adjacent landslides as a single polygon, can lead to potentially severe distortion of the statistics of these inventories. This problem can be especially severe in data sets produced by automated mapping. We present five inventories of earthquake-induced landslides mapped with different materials and techniques and affected by varying degrees of amalgamation. Errors on the total landslide volume and power-law exponent of the area–frequency distribution, resulting from amalgamation, may be up to 200 and 50%, respectively. We present an algorithm based on image and digital elevation model (DEM) analysis, for automatic identification of amalgamated polygons. On a set of about 2000 polygons larger than 1000 m2, tracing landslides triggered by the 1994 Northridge earthquake, the algorithm performs well, with only 2.7–3.6% incorrectly amalgamated landslides missed and 3.9–4.8% correct polygons incorrectly identified as amalgams. This algorithm can be used broadly to check landslide inventories and allow faster correction by automating the identification of amalgamation. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 485 KW - 2008 Wenchuan earthquake KW - size distributions KW - mountain belt KW - sediment KW - erosion KW - Taiwan KW - model Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408075 SN - 1866-8372 IS - 485 ER - TY - GEN A1 - Wilhelm, Jan Lorenz T1 - Atmosphere in the home stadium of Hertha BSC (German Bundesliga) T1 - Atmosphère au stade de Hertha BSC (Bundesliga allemande) T1 - El ambiente en el estadio de Hertha BSC (Bundesliga alemana) BT - melodies of moods, collective bodies, and the relevance of space BT - mélodies d’atmosphères, corps collectifs et pertinence de l’espace BT - melodías de estados de ánimo, cuerpos colectivos y la relevancia del espacio T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - German football stadiums are well known for their atmosphere. It is often described as ‘electrifying,’ or ‘cracking.’ This article focuses on this atmosphere. Using a phenomenological approach, it explores how this emotionality can be understood and how geography matters while attending a match. Atmosphere in this context is conceptualized based on work by as a mood-charged space, neither object- nor subject-centered, but rather a medium of perception which cannot not exist. Based on qualitative research done in the home stadium of Hertha BSC in the German Bundesliga, this article shows that the bodily sensations experienced by spectators during a visit to the stadium are synchronized with events on the pitch and with the more or less imposing scenery. The analysis of in situ diaries reveals that spectators experience a comprehensive sense of collectivity. The study presents evidence that the occurrence of these bodily sensations is strongly connected with different aspects of spatiality. This includes sensations of constriction and expansion within the body, an awareness of one’s location within the stadium, the influence of the immediate surroundings and cognitive here/there and inside/outside distinctions. N2 - Les stades de foot allemands sont bien connus pour leur atmosphère. Elle est souvent décrite comme « électrique » ou « géniale ». Cet article se concentre sur cette atmosphère. Utilisant une approche phénoménologique, il explore comment cette affectivité peut être comprise et comment la géographie a son importance quand on est à un match. L’atmosphère dans ce contexte est conceptualisée à partir des travaux de Gemot Böhme, comme un espace chargé d’atmosphère, ni centré sur le sujet, ni centré sur l’objet, mais plutôt comme un moyen de perception qui ne peut pas exister. A partir de recherche qualitative faite sur le stade de Hertha BSC de la Bundesliga allemande, cet article montre que les sensations corporelles ressenties par les spectateurs pendant une visite au stade sont synchronisées avec les événements sur le terrain et avec le paysage plus ou moins imposant. L’analyse de journaux intimes sur place révèle que les spectateurs font l’expérience d’une notion totale de collectivité. L’étude présente la preuve que la présence de ces sensations corporelles est fortement liée aux différents aspects de la spatialité. Cela inclut les sensations de compression et d’expansion dans le corps, une conscience de sa position dans le stade, l’influence de l’entourage immédiat et les distinctions cognitives de l’ici/là-bas et de l’intérieur/extérieur. N2 - Los estadios de fútbol alemanes son bien conocidos por su ambiente. A menudo se lo describe como ‘electrizante’ o ‘estupendo’. Este artículo se centra en este ambiente. Usando un enfoque fenomenológico, explora cómo se puede entender esta emotividad y la importancia de la geografía mientras se asiste a un partido. El ambiente en este contexto se conceptualiza a partir del trabajo de Gernot Böhme como un espacio cargado de emociones, no centrado en objetos ni en sujetos, sino en un medio de percepción que no puede no existir. Basado en investigaciones cualitativas realizadas en el estadio de Hertha BSC durante la Bundesliga alemana, este artículo muestra que las sensaciones corporales experimentadas por los espectadores durante una visita al estadio se sincronizan con los eventos en la cancha y con el escenario más o menos imponente. El análisis de experiencias in situ revela que los espectadores experimentan un sentido integral de colectividad. El estudio presenta evidencia de que la ocurrencia de estas sensaciones corporales está fuertemente relacionada con diferentes aspectos de la espacialidad. Esto incluye sensaciones de constricción y expansión dentro del cuerpo, una conciencia de su ubicación dentro del estadio, la influencia del entorno inmediato y las distinciones cognitivas aquí/allá y dentro/fuera. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 486 KW - atmosphere KW - corporeality KW - emotion KW - affect KW - stadium KW - football KW - phenomenology Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-420639 SN - 1866-8372 IS - 486 ER - TY - GEN A1 - Reil, Daniela A1 - Imholt, Christian A1 - Eccard, Jana A1 - Jacob, Jens T1 - Beech fructification and bank vole population dynamics BT - combined analyses of promoters of Human Puumala virus infections in Germany T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - The transmission of wildlife zoonoses to humans depends, amongst others, on complex interactions of host population ecology and pathogen dynamics within host populations. In Europe, the Puumala virus (PUUV) causes nephropathia epidemica in humans. In this study we investigated complex interrelations within the epidemic system of PUUV and its rodent host, the bank vole (Myodes glareolus). We suggest that beech fructification and bank vole abundance are both decisive factors affecting human PUUV infections. While rodent host dynamics are expected to be directly linked to human PUUV infections, beech fructification is a rather indirect predictor by serving as food source for PUUV rodent hosts. Furthermore, we examined the dependence of bank vole abundance on beech fructification. We analysed a 12-year (2001-2012) time series of the parameters: beech fructification (as food resource for the PUUV host), bank vole abundance and human incidences from 7 Federal States of Germany. For the first time, we could show the direct interrelation between these three parameters involved in human PUUV epidemics and we were able to demonstrate on a large scale that human PUUV infections are highly correlated with bank vole abundance in the present year, as well as beech fructification in the previous year. By using beech fructification and bank vole abundance as predictors in one model we significantly improved the degree of explanation of human PUUV incidence. Federal State was included as random factor because human PUUV incidence varies considerably among states. Surprisingly, the effect of rodent abundance on human PUUV infections is less strong compared to the indirect effect of beech fructification. Our findings are useful to facilitate the development of predictive models for host population dynamics and the related PUUV infection risk for humans and can be used for plant protection and human health protection purposes. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 484 KW - Fagus-Sylvatica L KW - Hantavirus infection KW - Nephrorathia-Epidemica KW - Rodent populations KW - Lyme-disease KW - risk-factors KW - Clethrionomys-Glareolus KW - temporal dynamics KW - renal-failure Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408064 SN - 1866-8372 IS - 484 ER - TY - GEN A1 - Liepertz, Sven A1 - Borowski, Andreas T1 - Testing the Consensus Model BT - relationships among physics teachers’ professional knowledge, interconnectedness of content structure and student achievement T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - The structure and definition of professional knowledge is a continuing focus of science education research. In 2012, a pedagogical content knowledge (PCK) summit was held and it suggested a model of professional knowledge and skill including PCK, which was later often called the Consensus Model (Gess-Newsome, 2015. A model of teacher professional knowledge and skill including PCK: Results of the thinking from the PCK summit. In A. Berry, P. J. Friedrichsen, & J. Loughran (Eds.), Teaching and learning in science series. Re-examining pedagogical content knowledge in science education (1st ed., pp. 28–42). New York, NY: Routledge). The Consensus Model proposes a potential powerful framework for the relations among teachers’ different professional knowledge bases, but to date it has neither been investigated empirically nor systematically. In this study, we investigated the relationships suggested by the Consensus Model among different aspects of teachers’ knowledge and skill. A sample of 35 physics teachers and their classes participated in the investigation; both teachers and their students in these classes took paper-and-pencil tests. Furthermore, a lesson taught by each of the teachers was videotaped and analysed. The video analysis focused on the interconnectedness of the content structure of the lesson as representation of the in-class actions of the teachers. The interconnectedness is understood as a direct result of the application of professional knowledge of the teachers to their teaching. The teachers’ knowledge showed no significant influence on the interconnectedness of the lesson content structure. However, the results confirmed the influence of interconnectedness and certain aspects of professional knowledge on students’ outcomes. Therefore, interconnectedness of content structure could be verified as one indicator of teachers’ instructional quality. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 482 KW - professional knowledge KW - PCK KW - the Consensus Model Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-416857 SN - 1866-8372 IS - 482 ER - TY - GEN A1 - Folkertsma, Remco A1 - Westbury, Michael V. A1 - Eccard, Jana A1 - Hofreiter, Michael T1 - The complete mitochondrial genome of the common vole, Microtus arvalis (Rodentia: Arvicolinae) T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - The common vole, Microtus arvalis belongs to the genus Microtus in the subfamily Arvicolinae. In this study, the complete mitochondrial genome of M. arvalis was recovered using shotgun sequencing and an iterative mapping approach using three related species. Phylogenetic analyses using the sequence of 21 arvicoline species place the common vole as a sister species to the East European vole (Microtus levis), but as opposed to previous results we find no support for the recognition of the genus Neodon within the subfamily Arvicolinae, as this is, as well as the genus Lasiopodomys, found within the Microtus genus. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 481 KW - Microtus arvalis KW - Arvicolinae KW - mitochondrial genome KW - common vole KW - phylogeny Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-412994 SN - 1866-8372 IS - 481 ER - TY - GEN A1 - Delgado, José Miguel Martins A1 - Voss, Sebastian A1 - Bürger, Gerd A1 - Vormoor, Klaus Josef A1 - Murawski, Aline A1 - Rodrigues Pereira, José Marcelo A1 - Martins, Eduardo A1 - Vasconcelos Júnior, Francisco A1 - Francke, Till T1 - Seasonal drought prediction for semiarid northeastern Brazil BT - verification of six hydro-meteorological forecast products T2 - Hydrology and Earth System Sciences N2 - A set of seasonal drought forecast models was assessed and verified for the Jaguaribe River in semiarid northeastern Brazil. Meteorological seasonal forecasts were provided by the operational forecasting system used at FUNCEME (Ceará’s research foundation for meteorology)and by the European Centre for Medium-Range Weather Forecasts (ECMWF). Three downscaling approaches (empirical quantile mapping, extended downscaling and weather pattern classification) were tested and combined with the models in hindcast mode for the period 1981 to 2014. The forecast issue time was January and the forecast period was January to June. Hydrological drought indices were obtained by fitting a multivariate linear regression to observations. In short, it was possible to obtain forecasts for (a) monthly precipitation,(b) meteorological drought indices, and (c) hydrological drought indices. The skill of the forecasting systems was evaluated with regard to root mean square error (RMSE), the Brier skill score (BSS) and the relative operating characteristic skill score (ROCSS). The tested forecasting products showed similar performance in the analyzed metrics. Forecasts of monthly precipitation had little or no skill considering RMSE and mostly no skill with BSS. A similar picture was seen when forecasting meteorological drought indices: low skill regarding RMSE and BSS and significant skill when discriminating hit rate and false alarm rate given by the ROCSS (forecasting drought events of, e.g., SPEI1 showed a ROCSS of around 0.5). Regarding the temporal variation of the forecast skill of the meteorological indices, it was greatest for April, when compared to the remaining months of the rainy season, while the skill of reservoir volume forecasts decreased with lead time. This work showed that a multi-model ensemble can forecast drought events of timescales relevant to water managers in northeastern Brazil with skill. But no or little skill could be found in the forecasts of monthly precipitation or drought indices of lower scales, like SPI1. Both this work and those here revisited showed that major steps forward are needed in forecasting the rainy season in northeastern Brazil. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 476 KW - Hydrological drought KW - River-Basin KW - Model KW - Patterns KW - Precipitation KW - Variability KW - Nordeste Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-418461 ER - TY - GEN A1 - Cestnik, Rok A1 - Rosenblum, Michael T1 - Inferring the phase response curve from observation of a continuously perturbed oscillator T2 - Scientific Reports N2 - Phase response curves are important for analysis and modeling of oscillatory dynamics in various applications, particularly in neuroscience. Standard experimental technique for determining them requires isolation of the system and application of a specifically designed input. However, isolation is not always feasible and we are compelled to observe the system in its natural environment under free-running conditions. To that end we propose an approach relying only on passive observations of the system and its input. We illustrate it with simulation results of an oscillator driven by a stochastic force. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 475 Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-418425 ER - TY - GEN A1 - Abouserie, Ahed A1 - Schilde, Uwe A1 - Taubert, Andreas T1 - The crystal structure of N-butylpyridinium bis(μ2-dichlorido)-tetrachloridodicopper(II), C₁₈H₂₈N₂Cu₂Cl₆ T2 - Zeitschrift für Kristallographie - New Crystal Structures N2 - C₉H₁₄Cl₃CuN, monoclinic, P2₁/n (no. 14), a = 9.6625(6) Å, b = 9.3486(3) Å, c = 14.1168(8) Å, β = 102.288(5)°, V = 1245.97(11) ų, Z = 4, Rgₜ(F) = 0.0182, wRᵣₑf(F²) = 0.0499, T = 210(2) K. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 465 KW - Ionic Liquid Precursor KW - Thermochromism KW - Salts KW - Nanostructures KW - Catalysis KW - Solvents KW - Complex KW - Gas Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-417310 ER - TY - GEN A1 - Sander, Martha Maria A1 - Eccard, Jana A1 - Heim, Wieland T1 - Flight range estimation of migrant Yellow-browed Warblers Phylloscopus inornatus on the East Asian flyway T2 - Bird Study N2 - Fat loads were quantified for 2125 Yellow-browed Warblers Phylloscopus inornatus trapped at a stop-over site in Far East Russia during autumn migration. Flight ranges of 660–820 km were estimated for the fattest individuals, suggesting that they would need to stop for refuelling at least six times to reach their wintering areas in South East Asia. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 464 KW - passerines KW - stopover KW - fuel KW - site KW - migration KW - Morocco KW - Russia KW - bird KW - fat Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-412823 ER - TY - GEN A1 - Utecht, Manuel Martin A1 - Klamroth, Tillmann T1 - Local resonances in STM manipulation of chlorobenzene on Si(111)-7×7 BT - performance of different cluster models and density functionals T2 - Molecular Physics N2 - Hot localised charge carriers on the Si(111)-7×7 surface are modelled by small charged clusters. Such resonances induce non-local desorption, i.e. more than 10 nm away from the injection site, of chlorobenzene in scanning tunnelling microscope experiments. We used such a cluster model to characterise resonance localisation and vibrational activation for positive and negative resonances recently. In this work, we investigate to which extent the model depends on details of the used cluster or quantum chemistry methods and try to identify the smallest possible cluster suitable for a description of the neutral surface and the ion resonances. Furthermore, a detailed analysis for different chemisorption orientations is performed. While some properties, as estimates of the resonance energy or absolute values for atomic changes, show such a dependency, the main findings are very robust with respect to changes in the model and/or the chemisorption geometry. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 463 KW - DFT KW - cluster model KW - charge localisation KW - STM Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-412970 ER - TY - GEN A1 - Todt, Helge Tobias A1 - Peña, Miriam A1 - Zühlke, Julia A1 - Oskinova, Lidia M. A1 - Hamann, Wolf-Rainer A1 - Gräfener, Götz T1 - Weak emission line central stars of planetary nebulae T2 - Planetary Nebulae: an Eye to the Future N2 - To understand the evolution and morphology of planetary nebulae, a detailed knowledge of their central stars is required. Central stars that exhibit emission lines in their spectra, indicating stellar mass-loss allow to study the evolution of planetary nebulae in action. Emission line central stars constitute about 10 % of all central stars. Half of them are practically hydrogen-free Wolf-Rayet type central stars of the carbon sequence, [WC], that show strong emission lines of carbon and oxygen in their spectra. In this contribution we address the weak emission-lines central stars (wels). These stars are poorly analyzed and their hydrogen content is mostly unknown. We obtained optical spectra, that include the important Balmer lines of hydrogen, for four weak emission line central stars. We present the results of our analysis, provide spectral classification and discuss possible explanations for their formation and evolution. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 462 KW - stars: AGB and post-AGB KW - stars: Wolf-Rayet KW - stars: abundances Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-413775 ER - TY - GEN A1 - Vormoor, Klaus Josef A1 - Heistermann, Maik A1 - Bronstert, Axel A1 - Lawrence, Deborah T1 - Hydrological model parameter (in)stability BT - “crash testing” the HBV model under contrasting flood seasonality conditions T2 - Hydrological Sciences Journal N2 - This paper investigates the transferability of calibrated HBV model parameters under stable and contrasting conditions in terms of flood seasonality and flood generating processes (FGP) in five Norwegian catchments with mixed snowmelt/rainfall regimes. We apply a series of generalized (differential) split-sample tests using a 6-year moving window over (i) the entire runoff observation periods, and (ii) two subsets of runoff observations distinguished by the seasonal occurrence of annual maximum floods during either spring or autumn. The results indicate a general model performance loss due to the transfer of calibrated parameters to independent validation periods of −5 to −17%, on average. However, there is no indication that contrasting flood seasonality exacerbates performance losses, which contradicts the assumption that optimized parameter sets for snowmelt-dominated floods (during spring) perform particularly poorly on validation periods with rainfall-dominated floods (during autumn) and vice versa. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 459 KW - hydrological modelling KW - flood seasonality KW - differential split-sample test KW - flood generating processes KW - Nordic catchments Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-413008 ER - TY - GEN A1 - Frieler, Katja A1 - Levermann, Anders A1 - Elliott, J. A1 - Heinke, J. A1 - Arneth, A. A1 - Bierkens, M. F. P. A1 - Ciais, Philippe A1 - Clark, D. B. A1 - Deryng, D. A1 - Doell, P. A1 - Falloon, P. A1 - Fekete, B. A1 - Folberth, Christian A1 - Friend, A. D. A1 - Gellhorn, C. A1 - Gosling, S. N. A1 - Haddeland, I. A1 - Khabarov, N. A1 - Lomas, M. A1 - Masaki, Y. A1 - Nishina, K. A1 - Neumann, K. A1 - Oki, T. A1 - Pavlick, R. A1 - Ruane, A. C. A1 - Schmid, E. A1 - Schmitz, C. A1 - Stacke, T. A1 - Stehfest, E. A1 - Tang, Q. A1 - Wisser, D. A1 - Huber, V. A1 - Piontek, Franziska A1 - Warszawski, L. A1 - Schewe, Jacob A1 - Lotze-Campen, Hermann A1 - Schellnhuber, Hans Joachim T1 - A framework for the cross-sectoral integration of multi-model impact projections BT - land use decisions under climate impacts uncertainties T2 - Earth system dynamics N2 - Climate change and its impacts already pose considerable challenges for societies that will further increase with global warming (IPCC, 2014a, b). Uncertainties of the climatic response to greenhouse gas emissions include the potential passing of large-scale tipping points (e.g. Lenton et al., 2008; Levermann et al., 2012; Schellnhuber, 2010) and changes in extreme meteorological events (Field et al., 2012) with complex impacts on societies (Hallegatte et al., 2013). Thus climate change mitigation is considered a necessary societal response for avoiding uncontrollable impacts (Conference of the Parties, 2010). On the other hand, large-scale climate change mitigation itself implies fundamental changes in, for example, the global energy system. The associated challenges come on top of others that derive from equally important ethical imperatives like the fulfilment of increasing food demand that may draw on the same resources. For example, ensuring food security for a growing population may require an expansion of cropland, thereby reducing natural carbon sinks or the area available for bio-energy production. So far, available studies addressing this problem have relied on individual impact models, ignoring uncertainty in crop model and biome model projections. Here, we propose a probabilistic decision framework that allows for an evaluation of agricultural management and mitigation options in a multi-impact-model setting. Based on simulations generated within the Inter-Sectoral Impact Model Intercomparison Project (ISI-MIP), we outline how cross-sectorally consistent multi-model impact simulations could be used to generate the information required for robust decision making. Using an illustrative future land use pattern, we discuss the trade-off between potential gains in crop production and associated losses in natural carbon sinks in the new multiple crop-and biome-model setting. In addition, crop and water model simulations are combined to explore irrigation increases as one possible measure of agricultural intensification that could limit the expansion of cropland required in response to climate change and growing food demand. This example shows that current impact model uncertainties pose an important challenge to long-term mitigation planning and must not be ignored in long-term strategic decision making. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 457 KW - global food demand KW - water availability KW - elevated CO2 KW - future KW - carbon KW - system KW - productivity KW - agriculture KW - emissions KW - scarcity Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407968 ER - TY - GEN A1 - Siegmund, Jonatan Frederik A1 - Sanders, Tanja G. M. A1 - Heinrich, Ingo A1 - Maaten, Ernst van der A1 - Simard, Sonia A1 - Helle, Gerhard A1 - Donner, Reik Volker T1 - Meteorological drivers of extremes in daily stem radius variations of beech, oak, and pine in Northeastern Germany BT - an event coincidence analysis T2 - Frontiers in plant science N2 - Observed recent and expected future increases in frequency and intensity of climatic extremes in central Europe may pose critical challenges for domestic tree species. Continuous dendrometer recordings provide a valuable source of information on tree stem radius variations, offering the possibility to study a tree's response to environmental influences at a high temporal resolution. In this study, we analyze stem radius variations (SRV) of three domestic tree species (beech, oak, and pine) from 2012 to 2014. We use the novel statistical approach of event coincidence analysis (ECA) to investigate the simultaneous occurrence of extreme daily weather conditions and extreme SRVs, where extremes are defined with respect to the common values at a given phase of the annual growth period. Besides defining extreme events based on individual meteorological variables, we additionally introduce conditional and joint ECA as new multivariate extensions of the original methodology and apply them for testing 105 different combinations of variables regarding their impact on SRV extremes. Our results reveal a strong susceptibility of all three species to the extremes of several meteorological variables. Yet, the inter-species differences regarding their response to the meteorological extremes are comparatively low. The obtained results provide a thorough extension of previous correlation-based studies by emphasizing on the timings of climatic extremes only. We suggest that the employed methodological approach should be further promoted in forest research regarding the investigation of tree responses to changing environmental conditions. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 456 KW - dendrometer measurements KW - event coincidence analysis KW - climate extremes KW - growth response Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407943 ER - TY - GEN A1 - Hollstein, André A1 - Segl, Karl A1 - Guanter, Luis A1 - Brell, Maximilian A1 - Enesco, Marta T1 - Ready-to-Use methods for the detection of clouds, cirrus, snow, shadow, water and clear sky pixels in Sentinel-2 MSI images T2 - remote sensing N2 - Classification of clouds, cirrus, snow, shadows and clear sky areas is a crucial step in the pre-processing of optical remote sensing images and is a valuable input for their atmospheric correction. The Multi-Spectral Imager on board the Sentinel-2's of the Copernicus program offers optimized bands for this task and delivers unprecedented amounts of data regarding spatial sampling, global coverage, spectral coverage, and repetition rate. Efficient algorithms are needed to process, or possibly reprocess, those big amounts of data. Techniques based on top-of-atmosphere reflectance spectra for single-pixels without exploitation of external data or spatial context offer the largest potential for parallel data processing and highly optimized processing throughput. Such algorithms can be seen as a baseline for possible trade-offs in processing performance when the application of more sophisticated methods is discussed. We present several ready-to-use classification algorithms which are all based on a publicly available database of manually classified Sentinel-2A images. These algorithms are based on commonly used and newly developed machine learning techniques which drastically reduce the amount of time needed to update the algorithms when new images are added to the database. Several ready-to-use decision trees are presented which allow to correctly label about 91% of the spectra within a validation dataset. While decision trees are simple to implement and easy to understand, they offer only limited classification skill. It improves to 98% when the presented algorithm based on the classical Bayesian method is applied. This method has only recently been used for this task and shows excellent performance concerning classification skill and processing performance. A comparison of the presented algorithms with other commonly used techniques such as random forests, stochastic gradient descent, or support vector machines is also given. Especially random forests and support vector machines show similar classification skill as the classical Bayesian method. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 455 KW - Sentinel-2 MSI KW - cloud detection KW - snow detection KW - cirrus detection KW - shadow detection KW - Bayesian classification KW - machine learning KW - decision trees Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407938 ER - TY - GEN A1 - Errard, Audrey A1 - Ulrichs, Christian A1 - Kühne, Stefan A1 - Mewis, Inga A1 - Mishig, Narantuya A1 - Maul, Ronald A1 - Drungowski, Mario A1 - Parolin, Pia A1 - Schreiner, Monika A1 - Baldermann, Susanne T1 - Metabolite profiling reveals a specific response in tomato to predaceous Chrysoperla carnea larvae and herbivore(s)-predator interactions with the generalist pests Tetranychus urticae and Myzus persicae T2 - Frontiers in plant science N2 - The spider mite Tetranychus urticae Koch and the aphid Myzus persicae (Sulzer) both infest a number of economically significant crops, including tomato (Solanurn lycopersicum). Although used for decades to control pests, the impact of green lacewing larvae Chrysoperla carnea (Stephens) on plant biochemistry was not investigated. Here, we used profiling methods and targeted analyses to explore the impact of the predator and herbivore(s)-predator interactions on tomato biochemistry. Each pest and pest -predator combination induced a characteristic metabolite signature in the leaf and the fruit thus, the plant exhibited a systemic response. The treatments had a stronger impact on non-volatile metabolites including abscisic acid and amino acids in the leaves in comparison with the fruits. In contrast, the various biotic factors had a greater impact on the carotenoids in the fruits. We identified volatiles such as myrcene and alpha-terpinene which were induced by pest -predator interactions but not by single species, and we demonstrated the involvement of the phytohormone abscisic acid in tritrophic interactions for the first time. More importantly, C. carnea larvae alone impacted the plant metabolome, but the predator did not appear to elicit particular defense pathways on its own. Since the presence of both C. carnea larvae and pest individuals elicited volatiles which were shown to contribute to plant defense, C. carnea larvae could therefore contribute to the reduction of pest infestation, not only by its preying activity, but also by priming responses to generalist herbivores such as T urticae and M. persicae. On the other hand, the use of C. carnea larvae alone did not impact carotenoids thus, was not prejudicial to the fruit quality. The present piece of research highlights the specific impact of predator and tritrophic interactions with green lacewing larvae, spider mites, and aphids on different components of the tomato primary and secondary metabolism for the first time, and provides cues for further in-depth studies aiming to integrate entomological approaches and plant biochemistry. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 454 KW - carotenoids KW - plant volatiles KW - Chrysopidae KW - Solanaceae KW - multiple-pest infestation KW - tritrophic system KW - Twister TM KW - biological pest control Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407913 ER - TY - GEN A1 - Singh, Alka A1 - Seitz, Florian A1 - Eicker, Annette A1 - Güntner, Andreas T1 - Water budget analysis within the surrounding of prominent lakes and reservoirs from multi-sensor earth observation data and hydrological models BT - case studies of the Aral Sea and Lake Mead T2 - remote sensing N2 - The hydrological budget of a region is determined based on the horizontal and vertical water fluxes acting in both inward and outward directions. These integrated water fluxes vary, altering the total water storage and consequently the gravitational force of the region. The time-dependent gravitational field can be observed through the Gravity Recovery and Climate Experiment (GRACE) gravimetric satellite mission, provided that the mass variation is above the sensitivity of GRACE. This study evaluates mass changes in prominent reservoir regions through three independent approaches viz. fluxes, storages, and gravity, by combining remote sensing products, in-situ data and hydrological model outputs using WaterGAP Global Hydrological Model (WGHM) and Global Land Data Assimilation System (GLDAS). The results show that the dynamics revealed by the GRACE signal can be better explored by a hybrid method, which combines remote sensing-based reservoir volume estimates with hydrological model outputs, than by exclusive model-based storage estimates. For the given arid/ semi-arid regions, GLDAS based storage estimations perform better than WGHM. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 453 KW - GRACE KW - water budget KW - reservoir KW - water fluxes KW - GLDAS KW - WGHM KW - Aral Sea KW - Lake Mead Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407902 ER - TY - GEN A1 - Tomov, Petar A1 - Pena, Rodrigo F. O. A1 - Roque, Antonio C. A1 - Zaks, Michael A. T1 - Mechanisms of self-sustained oscillatory states in hierarchical modular networks with mixtures of electrophysiological cell types T2 - Frontiers in computational neuroscience N2 - In a network with a mixture of different electrophysiological types of neurons linked by excitatory and inhibitory connections, temporal evolution leads through repeated epochs of intensive global activity separated by intervals with low activity level. This behavior mimics "up" and "down" states, experimentally observed in cortical tissues in absence of external stimuli. We interpret global dynamical features in terms of individual dynamics of the neurons. In particular, we observe that the crucial role both in interruption and in resumption of global activity is played by distributions of the membrane recovery variable within the network. We also demonstrate that the behavior of neurons is more influenced by their presynaptic environment in the network than by their formal types, assigned in accordance with their response to constant current. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 452 KW - self-sustained activity KW - cortical oscillations KW - irregular firing activity KW - hierarchical modular networks KW - cortical network models KW - intrinsic neuronal diversity KW - up-down states KW - chaotic neural dynamics Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407724 ER - TY - GEN A1 - Wehrhan, Marc A1 - Rauneker, Philipp A1 - Sommer, Michael T1 - UAV-Based estimation of carbon exports from heterogeneous soil landscapes BT - a case study from the CarboZALF experimental area T2 - Sensors N2 - The advantages of remote sensing using Unmanned Aerial Vehicles (UAVs) are a high spatial resolution of images, temporal flexibility and narrow-band spectral data from different wavelengths domains. This enables the detection of spatio-temporal dynamics of environmental variables, like plant-related carbon dynamics in agricultural landscapes. In this paper, we quantify spatial patterns of fresh phytomass and related carbon (C) export using imagery captured by a 12-band multispectral camera mounted on the fixed wing UAV Carolo P360. The study was performed in 2014 at the experimental area CarboZALF-D in NE Germany. From radiometrically corrected and calibrated images of lucerne (Medicago sativa), the performance of four commonly used vegetation indices (VIs) was tested using band combinations of six near-infrared bands. The highest correlation between ground-based measurements of fresh phytomass of lucerne and VIs was obtained for the Enhanced Vegetation Index (EVI) using near-infrared band b(899). The resulting map was transformed into dry phytomass and finally upscaled to total C export by harvest. The observed spatial variability at field- and plot-scale could be attributed to small-scale soil heterogeneity in part. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 451 KW - VI KW - soil landscape KW - carbon export KW - agriculture KW - multispectral KW - UAV Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407706 ER - TY - GEN A1 - Ćwiek-Kupczyńska, Hanna A1 - Altmann, Thomas A1 - Arend, Daniel A1 - Arnaud, Elizabeth A1 - Chen, Dijun A1 - Cornut, Guillaume A1 - Fiorani, Fabio A1 - Frohmberg, Wojciech A1 - Junker, Astrid A1 - Klukas, Christian A1 - Lange, Matthias A1 - Mazurek, Cezary A1 - Nafissi, Anahita A1 - Neveu, Pascal A1 - van Oeveren, Jan A1 - Pommier, Cyril A1 - Poorter, Hendrik A1 - Rocca-Serra, Philippe A1 - Sansone, Susanna-Assunta A1 - Scholz, Uwe A1 - van Schriek, Marco A1 - Seren, Ümit A1 - Usadel, Björn A1 - Weise, Stephan A1 - Kersey, Paul A1 - Krajewski, Paweł T1 - Measures for interoperability of phenotypic data BT - minimum information requirements and formatting T2 - Plant methods N2 - Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time ‑consuming experiments, the findings can be fostered by reusing and combin‑ ing existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. Results: In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a docu‑ ment called “Minimum Information About a Plant Phenotyping Experiment”, which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA ‑Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA ‑Tab ‑formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Conclusions: Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 450 KW - data standardisation and formatting KW - experimental metadata KW - minimum information recommendations KW - plant phenotyping KW - experiment description Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407299 ER - TY - GEN A1 - Stuetz, Wolfgang A1 - Weber, Daniela A1 - Dollé, Martijn E. T. A1 - Jansen, Eugène A1 - Grubeck-Loebenstein, Beatrix A1 - Fiegl, Simone A1 - Toussaint, Olivier A1 - Bernhardt, Juergen A1 - Gonos, Efstathios S. A1 - Franceschi, Claudio A1 - Sikora, Ewa A1 - Moreno-Villanueva, María A1 - Breusing, Nicolle A1 - Grune, Tilman A1 - Bürkle, Alexander T1 - Plasma carotenoids, tocopherols, and retinol in the age-stratified (35–74 years) general population BT - a cross-sectional study in six European countries T2 - Nutrients N2 - Blood micronutrient status may change with age. We analyzed plasma carotenoids, α-/γ-tocopherol, and retinol and their associations with age, demographic characteristics, and dietary habits (assessed by a short food frequency questionnaire) in a cross-sectional study of 2118 women and men (age-stratified from 35 to 74 years) of the general population from six European countries. Higher age was associated with lower lycopene and α-/β-carotene and higher β-cryptoxanthin, lutein, zeaxanthin, α-/γ-tocopherol, and retinol levels. Significant correlations with age were observed for lycopene (r = −0.248), α-tocopherol (r = 0.208), α-carotene (r = −0.112), and β-cryptoxanthin (r = 0.125; all p < 0.001). Age was inversely associated with lycopene (−6.5% per five-year age increase) and this association remained in the multiple regression model with the significant predictors (covariables) being country, season, cholesterol, gender, smoking status, body mass index (BMI (kg/m2)), and dietary habits. The positive association of α-tocopherol with age remained when all covariates including cholesterol and use of vitamin supplements were included (1.7% vs. 2.4% per five-year age increase). The association of higher β-cryptoxanthin with higher age was no longer statistically significant after adjustment for fruit consumption, whereas the inverse association of α-carotene with age remained in the fully adjusted multivariable model (−4.8% vs. −3.8% per five-year age increase). We conclude from our study that age is an independent predictor of plasma lycopene, α-tocopherol, and α-carotene. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 449 KW - carotenoids KW - plasma KW - age KW - Europe KW - micronutrient KW - lycopene KW - retinol KW - tocopherols Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407659 ER - TY - GEN A1 - Woting, Anni A1 - Blaut, Michael T1 - The intestinal microbiota in metabolic disease T2 - Nutrients N2 - Gut bacteria exert beneficial and harmful effects in metabolic diseases as deduced from the comparison of germfree and conventional mice and from fecal transplantation studies. Compositional microbial changes in diseased subjects have been linked to adiposity, type 2 diabetes and dyslipidemia. Promotion of an increased expression of intestinal nutrient transporters or a modified lipid and bile acid metabolism by the intestinal microbiota could result in an increased nutrient absorption by the host. The degradation of dietary fiber and the subsequent fermentation of monosaccharides to short-chain fatty acids (SCFA) is one of the most controversially discussed mechanisms of how gut bacteria impact host physiology. Fibers reduce the energy density of the diet, and the resulting SCFA promote intestinal gluconeogenesis, incretin formation and subsequently satiety. However, SCFA also deliver energy to the host and support liponeogenesis. Thus far, there is little knowledge on bacterial species that promote or prevent metabolic disease. Clostridium ramosum and Enterococcus cloacae were demonstrated to promote obesity in gnotobiotic mouse models, whereas bifidobacteria and Akkermansia muciniphila were associated with favorable phenotypes in conventional mice, especially when oligofructose was fed. How diet modulates the gut microbiota towards a beneficial or harmful composition needs further research. Gnotobiotic animals are a valuable tool to elucidate mechanisms underlying diet-host-microbe interactions. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 448 KW - intestinal microbiota KW - obesity KW - diabetes KW - metabolic syndrome KW - energy harvest KW - diet KW - absorption KW - bile acids KW - low-grade inflammation KW - SCFA Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407687 ER - TY - GEN A1 - Adhikari, Rishi Ram A1 - Glombitza, Clemens A1 - Nickel, Julia C. A1 - Anderson, Chloe H. A1 - Dunlea, Ann G. A1 - Spivack, Arthur J. A1 - Murray, Richard W. A1 - D’Hondt, Steven A1 - Kallmeyer, Jens T1 - Hydrogen utilization potential in subsurface sediments T2 - Frontiers in microbiology N2 - Subsurface microbial communities undertake many terminal electron-accepting processes, often simultaneously. Using a tritium-based assay, we measured the potential hydrogen oxidation catalyzed by hydrogenase enzymes in several subsurface sedimentary environments (Lake Van, Barents Sea, Equatorial Pacific, and Gulf of Mexico) with different predominant electron-acceptors. Hydrogenases constitute a diverse family of enzymes expressed by microorganisms that utilize molecular hydrogen as a metabolic substrate, product, or intermediate. The assay reveals the potential for utilizing molecular hydrogen and allows qualitative detection of microbial activity irrespective of the predominant electron-accepting process. Because the method only requires samples frozen immediately after recovery, the assay can be used for identifying microbial activity in subsurface ecosystems without the need to preserve live material. We measured potential hydrogen oxidation rates in all samples from multiple depths at several sites that collectively span a wide range of environmental conditions and biogeochemical zones. Potential activity normalized to total cell abundance ranges over five orders of magnitude and varies, dependent upon the predominant terminal electron acceptor. Lowest per-cell potential rates characterize the zone of nitrate reduction and highest per-cell potential rates occur in the methanogenic zone. Possible reasons for this relationship to predominant electron acceptor include (i) increasing importance of fermentation in successively deeper biogeochemical zones and (ii) adaptation of H(2)ases to successively higher concentrations of H-2 in successively deeper zones. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 447 KW - hydrogenase KW - tritium assay KW - deep biosphere KW - microbial activity KW - Lake Van KW - Barents Sea KW - Equatorial Pacific KW - Gulf of Mexico Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407678 ER - TY - GEN A1 - Nishikawa, Ken-Ichi A1 - Mizuno, Yosuke A1 - Niemiec, Jacek A1 - Kobzar, Oleh A1 - Pohl, Martin A1 - Gómez, Jose L. A1 - Duţan, Ioana A1 - Pe’er, Asaf A1 - Frederiksen, Jacob Trier A1 - Nordlund, Åke A1 - Meli, Athina A1 - Sol, Helene A1 - Hardee, Philip E. A1 - Hartmann, Dieter H. T1 - Microscopic processes in global relativistic jets containing helical magnetic fields T2 - Galaxies N2 - In the study of relativistic jets one of the key open questions is their interaction with the environment on the microscopic level. Here, we study the initial evolution of both electron-proton (e(-)-p(+)) and electron-positron (e(+/-)) relativistic jets containing helical magnetic fields, focusing on their interaction with an ambient plasma. We have performed simulations of "global" jets containing helical magnetic fields in order to examine how helical magnetic fields affect kinetic instabilities such as the Weibel instability, the kinetic Kelvin-Helmholtz instability (kKHI) and the Mushroom instability (MI). In our initial simulation study these kinetic instabilities are suppressed and new types of instabilities can grow. In the e(-)-p(+) jet simulation a recollimation-like instability occurs and jet electrons are strongly perturbed. In the e(+/-) jet simulation a recollimation-like instability occurs at early times followed by a kinetic instability and the general structure is similar to a simulation without helical magnetic field. Simulations using much larger systems are required in order to thoroughly follow the evolution of global jets containing helical magnetic fields. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 446 KW - relativistic jets KW - particle-in-cell simulations KW - global jets KW - helical magnetic fields KW - kinetic instabilities KW - kink instability Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407604 ER - TY - GEN A1 - Gliege, Steffen A1 - Thomas, Björn Daniel A1 - Steidl, Jörg A1 - Hohenbrink, Tobias Ludwig A1 - Dietrich, Ottfried T1 - Modeling the impact of ditch water level management on stream-aquifer interactions N2 - Decreasing groundwater levels in many parts of Germany and decreasing low flows in Central Europe have created a need for adaptation measures to stabilize the water balance and to increase low flows. The objective of our study was to estimate the impact of ditch water level management on stream-aquifer interactions in small lowland catchments of the mid-latitudes. The water balance of a ditch-irrigated area and fluxes between the subsurface and the adjacent stream were modeled for three runoff recession periods using the Hydrus-2D software package. The results showed that the subsurface flow to the stream was closely related to the difference between the water level in the ditch system and the stream. Evapotranspiration during the growing season additionally reduced base flow. It was crucial to stop irrigation during a recession period to decrease water withdrawal from the stream and enhance the base flow by draining the irrigated area. Mean fluxes to the stream were between 0.04 and 0.64 ls(-1) for the first 20 days of the low-flow periods. This only slightly increased the flow in the stream, whose mean was 57 ls(-1) during the period with the lowest flows. Larger areas would be necessary to effectively increase flows in mesoscale catchments. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 445 KW - ditch irrigation KW - adaption measure KW - Hydrus-2D KW - required minimum runoff KW - groundwater surface water interaction Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407613 ER - TY - GEN A1 - Zancolli, Giulia A1 - Baker, Timothy G. A1 - Barlow, Axel A1 - Bradley, Rebecca K. A1 - Calvete, Juan J. A1 - Carter, Kimberley C. A1 - de Jager, Kaylah A1 - Owens, John Benjamin A1 - Price, Jenny Forrester A1 - Sanz, Libia A1 - Scholes-Higham, Amy A1 - Shier, Liam A1 - Wood, Liam A1 - Wüster, Catharine E. A1 - Wüster, Wolfgang T1 - Is hybridization a source of adaptive venom variation in rattlesnakes? BT - a test, using a crotalus scutulatus × viridis hybrid zone in southwestern New Mexico T2 - Toxins N2 - Venomous snakes often display extensive variation in venom composition both between and within species. However, the mechanisms underlying the distribution of different toxins and venom types among populations and taxa remain insufficiently known. Rattlesnakes (Crotalus, Sistrurus) display extreme inter-and intraspecific variation in venom composition, centered particularly on the presence or absence of presynaptically neurotoxic phospholipases A2 such as Mojave toxin (MTX). Interspecific hybridization has been invoked as a mechanism to explain the distribution of these toxins across rattlesnakes, with the implicit assumption that they are adaptively advantageous. Here, we test the potential of adaptive hybridization as a mechanism for venom evolution by assessing the distribution of genes encoding the acidic and basic subunits of Mojave toxin across a hybrid zone between MTX-positive Crotalus scutulatus and MTX-negative C. viridis in southwestern New Mexico, USA. Analyses of morphology, mitochondrial and single copy-nuclear genes document extensive admixture within a narrow hybrid zone. The genes encoding the two MTX subunits are strictly linked, and found in most hybrids and backcrossed individuals, but not in C. viridis away from the hybrid zone. Presence of the genes is invariably associated with presence of the corresponding toxin in the venom. We conclude that introgression of highly lethal neurotoxins through hybridization is not necessarily favored by natural selection in rattlesnakes, and that even extensive hybridization may not lead to introgression of these genes into another species. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 443 KW - adaptation KW - Crotalus KW - evolution KW - hybridization KW - introgression KW - Mojave toxin KW - molecular evolution KW - venom Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407595 ER - TY - GEN A1 - Dietrich, Ottfried A1 - Schweigert, Susanne A1 - Steidl, Jörg A1 - Lischeid, Gunnar T1 - Effects of data and model simplification on the results of a wetland water resource management model T2 - Water N2 - This paper presents the development of a wetland water balance model for use in a large river basin with many different wetlands. The basic model was primarily developed for a single wetland with a complex water management system involving large amounts of specialized input data and water management details. The aim was to simplify the model structure and to use only commonly available data as input for the model, with the least possible loss of accuracy. Results from different variants of the model and data adaptation were tested against results from a detailed model. This shows that using commonly available data and unifying and simplifying the input data is tolerable up to a certain level. The simplification of the model has greater effects on the evaluated water balance components than the data adaptation. Because this simplification was necessary for large-scale use, we suggest that, for reasons of comparability, simpler models should always be applied with uniform data bases for large regions, though these should only be moderately simplified. Further, we recommend using these simplified models only for large-scale comparisons and using more specific, detailed models for investigations on smaller scales. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 442 KW - wetland KW - water balance KW - water balance model KW - evapotranspiration KW - groundwater level Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407579 ER - TY - GEN A1 - Rainford, James L. A1 - Hofreiter, Michael A1 - Mayhew, Peter J. T1 - Phylogenetic analyses suggest that diversification and body size evolution are independent in insects T2 - BMC evolutionary biology N2 - Background: Skewed body size distributions and the high relative richness of small-bodied taxa are a fundamental property of a wide range of animal clades. The evolutionary processes responsible for generating these distributions are well described in vertebrate model systems but have yet to be explored in detail for other major terrestrial clades. In this study, we explore the macro-evolutionary patterns of body size variation across families of Hexapoda (insects and their close relatives), using recent advances in phylogenetic understanding, with an aim to investigate the link between size and diversity within this ancient and highly diverse lineage. Results: The maximum, minimum and mean-log body lengths of hexapod families are all approximately log-normally distributed, consistent with previous studies at lower taxonomic levels, and contrasting with skewed distributions typical of vertebrate groups. After taking phylogeny and within-tip variation into account, we find no evidence for a negative relationship between diversification rate and body size, suggesting decoupling of the forces controlling these two traits. Likelihood-based modeling of the log-mean body size identifies distinct processes operating within Holometabola and Diptera compared with other hexapod groups, consistent with accelerating rates of size evolution within these clades, while as a whole, hexapod body size evolution is found to be dominated by neutral processes including significant phylogenetic conservatism. Conclusions: Based on our findings we suggest that the use of models derived from well-studied but atypical clades, such as vertebrates may lead to misleading conclusions when applied to other major terrestrial lineages. Our results indicate that within hexapods, and within the limits of current systematic and phylogenetic knowledge, insect diversification is generally unfettered by size-biased macro-evolutionary processes, and that these processes over large timescales tend to converge on apparently neutral evolutionary processes. We also identify limitations on available data within the clade and modeling approaches for the resolution of trees of higher taxa, the resolution of which may collectively enhance our understanding of this key component of terrestrial ecosystems. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 441 KW - body size KW - diversification KW - hexapoda KW - insects KW - phylogeny Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407328 ER - TY - GEN A1 - Vuillemin, Aurèle A1 - Friese, André A1 - Alawi, Mashal A1 - Henny, Cynthia A1 - Nomosatryo, Sulung A1 - Wagner, Dirk A1 - Crowe, Sean A. A1 - Kallmeyer, Jens T1 - Geomicrobiological features of ferruginous sediments from Lake Towuti, Indonesia T2 - Frontiers in microbiology N2 - Lake Towuti is a tectonic basin, surrounded by ultramafic rocks. Lateritic soils form through weathering and deliver abundant iron (oxy)hydroxides but very little sulfate to the lake and its sediment. To characterize the sediment biogeochemistry, we collected cores at three sites with increasing water depth and decreasing bottom water oxygen concentrations. Microbial cell densities were highest at the shallow site a feature we attribute to the availability of labile organic matter (OM) and the higher abundance of electron acceptors due to oxic bottom water conditions. At the two other sites, OM degradation and reduction processes below the oxycline led to partial electron acceptor depletion. Genetic information preserved in the sediment as extracellular DNA (eDNA) provided information on aerobic and anaerobic heterotrophs related to Nitrospirae. Chloroflexi, and Therrnoplasmatales. These taxa apparently played a significant role in the degradation of sinking OM. However, eDNA concentrations rapidly decreased with core depth. Despite very low sulfate concentrations, sulfate-reducing bacteria were present and viable in sediments at all three sites, as confirmed by measurement of potential sulfate reduction rates. Microbial community fingerprinting supported the presence of taxa related to Deltaproteobacteria and Firmicutes with demonstrated capacity for iron and sulfate reduction. Concomitantly, sequences of Ruminococcaceae, Clostridiales, and Methanornicrobiales indicated potential for fermentative hydrogen and methane production. Such first insights into ferruginous sediments showed that microbial populations perform successive metabolisms related to sulfur, iron, and methane. In theory, iron reduction could reoxidize reduced sulfur compounds and desorb OM from iron minerals to allow remineralization to methane. Overall, we found that biogeochemical processes in the sediments can be linked to redox differences in the bottom waters of the three sites, like oxidant concentrations and the supply of labile OM. At the scale of the lacustrine record, our geomicrobiological study should provide a means to link the extant subsurface biosphere to past environments. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 440 KW - bottom waters KW - iron-rich sediment KW - sedimentary microbes KW - extracellular DNA KW - sulfate reduction KW - iron reduction KW - Lake Towuti Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407312 ER - TY - GEN A1 - Avila, Daiana Silva A1 - Benedetto, Alexandre A1 - Au, Catherine A1 - Bornhorst, Julia A1 - Aschner, Michael A. T1 - Involvement of heat shock proteins on Mn-induced toxicity in Caenorhabditis elegans T2 - BMC pharmacology and toxicology N2 - Background: All living cells display a rapid molecular response to adverse environmental conditions, and the heat shock protein family reflects one such example. Hence, failing to activate heat shock proteins can impair the cellular response. In the present study, we evaluated whether the loss of different isoforms of heat shock protein ( hsp ) genes in Caenorhabditis elegans would affect their vulnerability to Manganese (Mn) toxicity. Methods: We exposed wild type and selected hsp mutant worms to Mn (30 min) and next evaluated further the most susceptible strains. We analyzed survi val, protein carbonylation (as a marker of oxidative stress) and Parkinson ’ s disease related gene expression immediately after Mn exposure. Lastly, we observed dopaminergic neurons in wild type worms and in hsp-70 mutants following Mn treatment. Analysis of the data was performed by one-way or two way ANOVA, depending on the case, followed by post-hoc Bonferroni test if the overall p value was less than 0.05. Results: We verified that the loss of hsp-70, hsp-3 and chn-1 increased the vulnerability to Mn, as exposed mutant worms showed lower survival rate and increased protein oxidation. The importance of hsp-70 against Mn toxicity was then corroborated in dopaminergic neurons, where Mn neurotoxicity was aggravated. The lack of hsp-70 also blocked the transcriptional upregulation of pink1 , a gene that has been linked to Parkinson ’ sdisease. Conclusions: Taken together, our data suggest that Mn exposu re modulates heat shock protein expression, particularly HSP-70, in C. elegans .Furthermore,lossof hsp-70 increases protein oxidation and dopaminergic neuronal degeneration following manganese exposure, which is associated with the inhibition of pink1 increased expression, thus pot entially exacerbating the v ulnerability to this metal. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 439 KW - Caenorhabitis elegans KW - Manganese KW - heat shock proteins KW - hsp-70 KW - pink1 Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407286 ER - TY - GEN A1 - Lukoszek, Radoslaw A1 - Feist, Peter A1 - Ignatova, Zoya T1 - Insights into the adaptive response of Arabidopsis thaliana to prolonged thermal stress by ribosomal profiling and RNA-Seq T2 - BMC plant biology N2 - Background: Environmental stress puts organisms at risk and requires specific stress-tailored responses to maximize survival. Long-term exposure to stress necessitates a global reprogramming of the cellular activities at different levels of gene expression. Results: Here, we use ribosome profiling and RNA sequencing to globally profile the adaptive response of Arabidopsis thaliana to prolonged heat stress. To adapt to long heat exposure, the expression of many genes is modulated in a coordinated manner at a transcriptional and translational level. However, a significant group of genes opposes this trend and shows mainly translational regulation. Different secondary structure elements are likely candidates to play a role in regulating translation of those genes. Conclusions: Our data also uncover on how the subunit stoichiometry of multimeric protein complexes in plastids is maintained upon heat exposure. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 438 KW - translation KW - ribosome profiling KW - transcription KW - RNA-Seq KW - secondary structure KW - G-quadruplexes, KW - heat stress response Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407262 ER - TY - GEN A1 - Kühn, Tilman A1 - Floegel, Anna A1 - Sookthai, Disorn A1 - Johnson, Theron A1 - Rolle-Kampczyk, Ulrike A1 - Otto, Wolfgang A1 - von Bergen, Martin A1 - Boeing, Heiner A1 - Kaaks, Rudolf T1 - Higher plasma levels of lysophosphatidylcholine 18:0 are related to a lower risk of common cancers in a prospective metabolomics study T2 - BMC medicine N2 - Background: First metabolomics studies have indicated that metabolic fingerprints from accessible tissues might be useful to better understand the etiological links between metabolism and cancer. However, there is still a lack of prospective metabolomics studies on pre-diagnostic metabolic alterations and cancer risk. Methods: Associations between pre-diagnostic levels of 120 circulating metabolites (acylcarnitines, amino acids, biogenic amines, phosphatidylcholines, sphingolipids, and hexoses) and the risks of breast, prostate, and colorectal cancer were evaluated by Cox regression analyses using data of a prospective case-cohort study including 835 incident cancer cases. Results: The median follow-up duration was 8.3 years among non-cases and 6.5 years among incident cases of cancer. Higher levels of lysophosphatidylcholines (lysoPCs), and especially lysoPC a C18:0, were consistently related to lower risks of breast, prostate, and colorectal cancer, independent of background factors. In contrast, higher levels of phosphatidylcholine PC ae C30:0 were associated with increased cancer risk. There was no heterogeneity in the observed associations by lag time between blood draw and cancer diagnosis. Conclusion: Changes in blood lipid composition precede the diagnosis of common malignancies by several years. Considering the consistency of the present results across three cancer types the observed alterations point to a global metabolic shift in phosphatidylcholine metabolism that may drive tumorigenesis. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 437 KW - metabolomics KW - epidemiology KW - breast cancer KW - prostate cancer KW - colorectal cancer Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407258 ER - TY - GEN A1 - Roggenbuck, Dirk A1 - Borghi, Maria Orietta A1 - Somma, Valentina A1 - Büttner, Thomas A1 - Schierack, Peter A1 - Hanack, Katja A1 - Grossi, Claudia A1 - Bodio, Caterina A1 - Macor, Paolo A1 - von Landenberg, Philipp A1 - Boccellato, Francesco A1 - Mahler, Michael A1 - Meroni, Pier Luigi T1 - Antiphospholipid antibodies detected by line immunoassay differentiate among patients with antiphospholipid syndrome, with infections and asymptomatic carriers T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Background Antiphospholipid antibodies (aPL) can be detected in asymptomatic carriers and infectious patients. The aim was to investigate whether a novel line immunoassay (LIA) differentiates between antiphospholipid syndrome (APS) and asymptomatic aPL+ carriers or patients with infectious diseases (infectious diseases controls (IDC)). Methods Sixty-one patients with APS (56 primary, 22/56 with obstetric events only, and 5 secondary), 146 controls including 24 aPL+ asymptomatic carriers and 73 IDC were tested on a novel hydrophobic solid phase coated with cardiolipin (CL), phosphatic acid, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylserine, beta2-glycoprotein I (β2GPI), prothrombin, and annexin V. Samples were also tested by anti-CL and anti-β2GPI ELISAs and for lupus anticoagulant activity. Human monoclonal antibodies (humoAbs) against human β2GPI or PL alone were tested on the same LIA substrates in the absence or presence of human serum, purified human β2GPI or after CL-micelle absorption. Results Comparison of LIA with the aPL-classification assays revealed good agreement for IgG/IgM aß2GPI and aCL. Anti-CL and anti-ß2GPI IgG/IgM reactivity assessed by LIA was significantly higher in patients with APS versus healthy controls and IDCs, as detected by ELISA. IgG binding to CL and ß2GPI in the LIA was significantly lower in aPL+ carriers and Venereal Disease Research Laboratory test (VDRL) + samples than in patients with APS. HumoAb against domain 1 recognized β2GPI bound to the LIA-matrix and in anionic phospholipid (PL) complexes. Absorption with CL micelles abolished the reactivity of a PL-specific humoAb but did not affect the binding of anti-β2GPI humoAbs. Conclusions The LIA and ELISA have good agreement in detecting aPL in APS, but the LIA differentiates patients with APS from infectious patients and asymptomatic carriers, likely through the exposure of domain 1. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 436 KW - Antiphospholipid syndrome KW - Antiphospholipid antibody KW - Phospholipid binding proteins KW - Beta2 - glycoprotein I KW - Line immunoassay Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407211 SN - 1866-8372 IS - 436 ER - TY - GEN A1 - Krupinski, Pawel A1 - Bozorg, Behruz A1 - Larsson, André A1 - Pietra, Stefano A1 - Grebe, Markus A1 - Jönsson, Henrik T1 - A model analysis of mechanisms for radial microtubular patterns at root hair initiation sites T2 - Frontiers in plant science N2 - Plant cells have two main modes of growth generating anisotropic structures. Diffuse growth where whole cell walls extend in specific directions, guided by anisotropically positioned cellulose fibers, and tip growth, with inhomogeneous addition of new cell wall material at the tip of the structure. Cells are known to regulate these processes via molecular signals and the cytoskeleton. Mechanical stress has been proposed to provide an input to the positioning of the cellulose fibers via cortical microtubules in diffuse growth. In particular, a stress feedback model predicts a circumferential pattern of fibers surrounding apical tissues and growing primordia, guided by the anisotropic curvature in such tissues. In contrast, during the initiation of tip growing root hairs, a star-like radial pattern has recently been observed. Here, we use detailed finite element models to analyze how a change in mechanical properties at the root hair initiation site can lead to star-like stress patterns in order to understand whether a stress-based feedback model can also explain the microtubule patterns seen during root hair initiation. We show that two independent mechanisms, individually or combined, can be sufficient to generate radial patterns. In the first, new material is added locally at the position of the root hair. In the second, increased tension in the initiation area provides a mechanism. Finally, we describe how a molecular model of Rho-of-plant (ROP) GTPases activation driven by auxin can position a patch of activated ROP protein basally along a 2D root epidermal cell plasma membrane, paving the way for models where mechanical and molecular mechanisms cooperate in the initial placement and outgrowth of root hairs. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 435 KW - plant cell wall KW - finite element modeling KW - computational morphodynamics KW - root hair initiation KW - microtubules KW - cellulose fibers KW - composite material Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407181 ER - TY - GEN A1 - Liaimer, Anton A1 - Jensen, John B. A1 - Dittmann-Thünemann, Elke T1 - A genetic and chemical perspective on symbiotic recruitment of cyanobacteria of the genus Nostoc into the host plant Blasia pusilla L. T2 - Frontiers in microbiology N2 - Liverwort Blasia pusilla L. recruits soil nitrogen-fixing cyanobacteria of genus Nostoc as symbiotic partners. In this work we compared Nostoc community composition inside the plants and in the soil around them from two distant locations in Northern Norway. STRR fingerprinting and 16S rDNA phylogeny reconstruction showed a remarkable local diversity among isolates assigned to several Nostoc clades. An extensive web of negative allelopathic interactions was recorded at an agricultural site, but not at the undisturbed natural site. The cell extracts of the cyanobacteria did not show antimicrobial activities, but four isolates were shown to be cytotoxic to human cells. The secondary metabolite profiles of the isolates were mapped by MALDI-TOF MS, and the most prominent ions were further analyzed by Q-TOF for MS/MS aided identification. Symbiotic isolates produced a great variety of small peptide-like substances, most of which lack any record in the databases. Among identified compounds we found microcystin and nodularin variants toxic to eukaryotic cells. Microcystin producing chemotypes were dominating as symbiotic recruits but not in the free-living community. In addition, we were able to identify several novel aeruginosins and banyaside-like compounds, as well as nostocyclopeptides and nosperin. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 434 KW - cyanobacteria KW - secondary metabolites KW - symbiosis KW - Blasia KW - Nostoc KW - allelopathy Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407179 ER - TY - GEN A1 - van Velzen, Ellen A1 - Gaedke, Ursula T1 - Reversed predator BT - prey cycles are driven by the amplitude of prey oscillations N2 - Ecoevolutionary feedbacks in predator–prey systems have been shown to qualitatively alter predator–prey dynamics. As a striking example, defense–offense coevolution can reverse predator–prey cycles, so predator peaks precede prey peaks rather than vice versa. However, this has only rarely been shown in either model studies or empirical systems. Here, we investigate whether this rarity is a fundamental feature of reversed cycles by exploring under which conditions they should be found. For this, we first identify potential conditions and parameter ranges most likely to result in reversed cycles by developing a new measure, the effective prey biomass, which combines prey biomass with prey and predator traits, and represents the prey biomass as perceived by the predator. We show that predator dynamics always follow the dynamics of the effective prey biomass with a classic ¼‐phase lag. From this key insight, it follows that in reversed cycles (i.e., ¾‐lag), the dynamics of the actual and the effective prey biomass must be in antiphase with each other, that is, the effective prey biomass must be highest when actual prey biomass is lowest, and vice versa. Based on this, we predict that reversed cycles should be found mainly when oscillations in actual prey biomass are small and thus have limited impact on the dynamics of the effective prey biomass, which are mainly driven by trait changes. We then confirm this prediction using numerical simulations of a coevolutionary predator–prey system, varying the amplitude of the oscillations in prey biomass: Reversed cycles are consistently associated with regions of parameter space leading to small‐amplitude prey oscillations, offering a specific and highly testable prediction for conditions under which reversed cycles should occur in natural systems. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 433 KW - coevolution KW - ecoevolutionary dynamics KW - predator-prey dynamics KW - top-down control Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-411652 ER - TY - GEN A1 - Üstün, Suayib A1 - Bartetzko, Verena A1 - Börnke, Frederik T1 - The Xanthomonas effector XopJ triggers a conditional hypersensitive response upon treatment of N. benthamiana leaves with salicylic acid T2 - Frontiers in plant science N2 - XopJ is a Xanthomonas type III effector protein that promotes bacterial virulence on susceptible pepper plants through the inhibition of the host cell proteasome and a resultant suppression of salicylic acid (SA) - dependent defense responses. We show here that Nicotiana benthamiana leaves transiently expressing XopJ display hypersensitive response (HR) -like symptoms when exogenously treated with SA. This apparent avirulence function of XopJ was further dependent on effector myristoylation as well as on an intact catalytic triad, suggesting a requirement of its enzymatic activity for HR-like symptom elicitation. The ability of XopJ to cause a HR-like symptom development upon SA treatment was lost upon silencing of SGT1 and NDR1, respectively, but was independent of EDS1 silencing, suggesting that XopJ is recognized by an R protein of the CC-NBS-LRR class. Furthermore, silencing of NPR1 abolished the elicitation of HR-like symptoms in XopJ expressing leaves after SA application. Measurement of the proteasome activity indicated that proteasome inhibition by XopJ was alleviated in the presence of SA, an effect that was not observed in NPR1 silenced plants. Our results suggest that XopJ - triggered HR-like symptoms are closely related to the virulence function of the effector and that XopJ follows a two-signal model in order to elicit a response in the non-host plant N. benthamiana. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 432 KW - Xanthomonas KW - type-III effector KW - XopJ KW - avirulence KW - salicylic acid Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-406537 ER - TY - GEN A1 - Makowicz, Amber M. A1 - Tiedemann, Ralph A1 - Steele, Rachel N. A1 - Schlupp, Ingo T1 - Kin recognition in a clonal fish, Poecilia formosa T2 - PLoS ONE N2 - Relatedness strongly influences social behaviors in a wide variety of species. For most species, the highest typical degree of relatedness is between full siblings with 50% shared genes. However, this is poorly understood in species with unusually high relatedness between individuals: clonal organisms. Although there has been some investigation into clonal invertebrates and yeast, nothing is known about kin selection in clonal vertebrates. We show that a clonal fish, the Amazon molly (Poecilia formosa), can distinguish between different clonal lineages, associating with genetically identical, sister clones, and use multiple sensory modalities. Also, they scale their aggressive behaviors according to the relatedness to other females: they are more aggressive to non-related clones. Our results demonstrate that even in species with very small genetic differences between individuals, kin recognition can be adaptive. Their discriminatory abilities and regulation of costly behaviors provides a powerful example of natural selection in species with limited genetic diversity. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 431 KW - toxic hydrogen-sulfide KW - sexual selection KW - hybrid origin KW - discrimination KW - behavior KW - competition KW - aggression KW - cues KW - consequences KW - avoidance Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-411329 ER - TY - GEN A1 - Vogt, Julia H. M. A1 - Schippers, Jos H. M. T1 - Setting the PAS, the role of circadian PAS domain proteins during environmental adaptation in plants T2 - Frontiers in plant science N2 - The per-ARNT-sim (PAS) domain represents an ancient protein module that can be found across all kingdoms of life. The domain functions as a sensing unit for a diverse array of signals, including molecular oxygen, small metabolites, and light. In plants, several PAS domain-containing proteins form an integral part of the circadian clock and regulate responses to environmental change. Moreover, these proteins function in pathways that control development and plant stress adaptation responses. Here, we discuss the role of PAS domain-containing proteins in anticipation, and adaptation to environmental changes in plants. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 430 KW - PAS domain KW - circadian clock KW - signal transduction KW - environmental stress response KW - growth adaptation Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-406492 ER - TY - GEN A1 - Witzel, Katja A1 - Neugart, Susanne A1 - Ruppel, Silke A1 - Schreiner, Monika A1 - Wiesner, Melanie A1 - Baldermann, Susanne T1 - Recent progress in the use of ‘omics technologies in brassicaceous vegetables T2 - Frontiers in plant science N2 - Continuing advances in 'omics methodologies and instrumentation is enhancing the understanding of how plants cope with the dynamic nature of their growing environment. 'Omics platforms have been only recently extended to cover horticultural crop species. Many of the most widely cultivated vegetable crops belong to the genus Brassica: these include plants grown for their root (turnip, rutabaga/swede), their swollen stem base (kohlrabi), their leaves (cabbage, kale, pak choi) and their inflorescence (cauliflower, broccoli). Characterization at the genome, transcript, protein and metabolite levels has illustrated the complexity of the cellular response to a whole series of environmental stresses, including nutrient deficiency, pathogen attack, heavy metal toxicity, cold acclimation, and excessive and sub optimal irradiation. This review covers recent applications of omics technologies to the brassicaceous vegetables, and discusses future scenarios in achieving improvements in crop end-use quality. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 429 KW - genomics KW - transcriptomics KW - metabolomics KW - proteomics KW - crop KW - microbiomics Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-406479 ER - TY - GEN A1 - Rieck, Angelika A1 - Herlemann, Daniel P. R. A1 - Jürgens, Klaus A1 - Grossart, Hans-Peter T1 - Particle-associated differ from free-living bacteria in surface waters of the Baltic Sea T2 - Frontiers in microbiology N2 - Many studies on bacterial community composition (BCC) do not distinguish between particle associated (PA) and free-living (FL) bacteria or neglect the PA fraction by pre-filtration removing most particles. Although temporal and spatial gradients in environmental variables are known to shape BCC, it remains unclear how and to what extent PA and FL bacterial diversity responds to such environmental changes. To elucidate the BCC of both bacterial fractions related to different environmental settings, we studied surface samples of three Baltic Sea stations (marine, mesohaline, and oligohaline) in two different seasons (summer and fall/winter). Amplicon sequencing of the 16S rRNA gene revealed significant differences in BCC of both bacterial fractions among stations and seasons, with a particularly high number of PA operational taxonomic units (OTUs at genus-level) at the marine station in both seasons. "Shannon and Simpson indices" showed a higher diversity of PA than FL bacteria at the marine station in both seasons and at the oligohaline station in fall/winter. In general, a high fraction of bacterial OTUs was found exclusively in the PA fraction (52% of total OTUs). These findings indicate that PA bacteria significantly contribute to overall bacterial richness and that they differ from FL bacteria. Therefore, to gain a deeper understanding on diversity and dynamics of aquatic bacteria, PA and FL bacteria should be generally studied independently. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 428 KW - microbial communities KW - microbial diversity KW - particle-associated and free-living bacteria KW - Baltic Sea KW - salinity gradient KW - seasons KW - 454-pyrosequencing Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-406442 ER - TY - GEN A1 - Johnson, Kim L. A1 - Ramm, Sascha A1 - Kappel, Christian A1 - Ward, Sally A1 - Leyser, Ottoline A1 - Sakamoto, Tomoaki A1 - Kurata, Tetsuya A1 - Bevan, Michael W. A1 - Lenhard, Michael T1 - The tinkerbell (tink) mutation identifies the dual-specificity MAPK phosphatase INDOLE- 3-BUTYRIC ACID-RESPONSE5 (IBR5) as a novel regulator of organ size in Arabidopsis T2 - PLoS ONE N2 - Mitogen-activated dual-specificity MAPK phosphatases are important negative regulators in the MAPK signalling pathways responsible for many essential processes in plants. In a screen for mutants with reduced organ size we have identified a mutation in the active site of the dual-specificity MAPK phosphatase INDOLE-3-BUTYRIC ACID-RESPONSE5 (IBR5) that we named tinkerbell (tink) due to its small size. Analysis of the tink mutant indicates that IBR5 acts as a novel regulator of organ size that changes the rate of growth in petals and leaves. Organ size and shape regulation by IBR5 acts independently of the KLU growth-regulatory pathway. Microarray analysis of tink/ibr5-6 mutants identified a likely role for this phosphatase in male gametophyte development. We show that IBR5 may influence the size and shape of petals through auxin and TCP growth regulatory pathways. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 427 KW - class-i KW - protein phosphatase KW - auxin KW - responses KW - thaliana KW - kinase KW - growth KW - interacts KW - distinct KW - pathway Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-410245 ER - TY - GEN A1 - Schleussner, Carl-Friedrich A1 - Lissner, Tabea Katharina A1 - Fischer, Erich M. A1 - Wohland, Jan A1 - Perrette, Mahé A1 - Golly, Antonius A1 - Rogelj, Joeri A1 - Childers, Katelin A1 - Schewe, Jacob A1 - Frieler, Katja A1 - Mengel, Matthias A1 - Hare, William A1 - Schaeffer, Michiel T1 - Differential climate impacts for policy-relevant limits to global warming BT - the case of 1.5 °C and 2 °C T2 - Earth System Dynamics N2 - Robust appraisals of climate impacts at different levels of global-mean temperature increase are vital to guide assessments of dangerous anthropogenic interference with the climate system. The 2015 Paris Agreement includes a two-headed temperature goal: "holding the increase in the global average temperature to well below 2 degrees C above pre-industrial levels and pursuing efforts to limit the temperature increase to 1.5 degrees C". Despite the prominence of these two temperature limits, a comprehensive overview of the differences in climate impacts at these levels is still missing. Here we provide an assessment of key impacts of climate change at warming levels of 1.5 degrees C and 2 degrees C, including extreme weather events, water availability, agricultural yields, sea-level rise and risk of coral reef loss. Our results reveal substantial differences in impacts between a 1.5 degrees C and 2 degrees C warming that are highly relevant for the assessment of dangerous anthropogenic interference with the climate system. For heat-related extremes, the additional 0.5 degrees C increase in global-mean temperature marks the difference between events at the upper limit of present-day natural variability and a new climate regime, particularly in tropical regions. Similarly, this warming difference is likely to be decisive for the future of tropical coral reefs. In a scenario with an end-of-century warming of 2 degrees C, virtually all tropical coral reefs are projected to be at risk of severe degradation due to temperature-induced bleaching from 2050 onwards. This fraction is reduced to about 90% in 2050 and projected to decline to 70% by 2100 for a 1.5 degrees C scenario. Analyses of precipitation-related impacts reveal distinct regional differences and hot-spots of change emerge. Regional reduction in median water availability for the Mediterranean is found to nearly double from 9% to 17% between 1.5 degrees C and 2 degrees C, and the projected lengthening of regional dry spells increases from 7 to 11%. Projections for agricultural yields differ between crop types as well as world regions. While some (in particular high-latitude) regions may benefit, tropical regions like West Africa, South-East Asia, as well as Central and northern South America are projected to face substantial local yield reductions, particularly for wheat and maize. Best estimate sea-level rise projections based on two illustrative scenarios indicate a 50cm rise by 2100 relative to year 2000-levels for a 2 degrees C scenario, and about 10 cm lower levels for a 1.5 degrees C scenario. In a 1.5 degrees C scenario, the rate of sea-level rise in 2100 would be reduced by about 30% compared to a 2 degrees C scenario. Our findings highlight the importance of regional differentiation to assess both future climate risks and different vulnerabilities to incremental increases in global-mean temperature. The article provides a consistent and comprehensive assessment of existing projections and a good basis for future work on refining our understanding of the difference between impacts at 1.5 degrees C and 2 degrees C warming. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 426 KW - sea-level rise KW - Greenland ice-sheet KW - coral-reefs KW - precipitation extremes KW - West Antarctica KW - pine Island KW - model KW - projections KW - temperature KW - scenarios Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-410258 ER - TY - GEN A1 - Klauß, André A1 - König, Marcelle A1 - Hille, Carsten T1 - Upgrade of a scanning confocal microscope to a single-beam path STED microscope T2 - PLoS ONE N2 - By overcoming the diffraction limit in light microscopy, super-resolution techniques, such as stimulated emission depletion (STED) microscopy, are experiencing an increasing impact on life sciences. High costs and technically demanding setups, however, may still hinder a wider distribution of this innovation in biomedical research laboratories. As far-field microscopy is the most widely employed microscopy modality in the life sciences, upgrading already existing systems seems to be an attractive option for achieving diffraction-unlimited fluorescence microscopy in a cost-effective manner. Here, we demonstrate the successful upgrade of a commercial time-resolved confocal fluorescence microscope to an easy-to-align STED microscope in the single-beam path layout, previously proposed as "easy-STED", achieving lateral resolution aEuro-1000aEuro-A mu atm during periods when phytoplankton biomass increased. In addition, we found significant relationships (e.g., between PP and Chl a) in the untreated mesocosms which were not observed under high fCO(2) conditions. Consequently, it can be hypothesized that the relationship between PP formation and phytoplankton growth changed with CO2 elevation. It can be deduced from the results, that visible effects of CO2 on P pools are coupled to phytoplankton growth when the transformation of PO4 into POP was stimulated. The transformation of PO4 into DOP on the other hand does not seem to be affected. Additionally, there were some indications that cellular mechanisms of P regulation might be modified under CO2 elevation changing the relationship between cellular constituents. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 424 KW - Eastern Gotland basin KW - nodularia spumigena KW - organic-matter KW - filamentous cyanobacteria KW - Ocean acidification KW - nitrogen-fixation KW - PCO(2) levels KW - elevated CO2 KW - Peece-III KW - seawater Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-410274 ER - TY - GEN A1 - Volckmar, Anna-Lena A1 - Han, Chung-Ting A1 - Pütter, Carolin A1 - Haas, Stefan A1 - Vogel, Carla I. G. A1 - Knoll, Nadja A1 - Struve, Christoph A1 - Göbel, Maria A1 - Haas, Katharina A1 - Herrfurth, Nikolas A1 - Jarick, Ivonne A1 - Grallert, Harald A1 - Schürmann, Annette A1 - Al- Hasani, Hadi A1 - Hebebrand, Johannes A1 - Sauer, Sascha A1 - Hinney, Anke T1 - Analysis of genes involved in body weight regulation by targeted re-sequencing T2 - PLoS ONE N2 - Introduction Genes involved in body weight regulation that were previously investigated in genome-wide association studies (GWAS) and in animal models were target-enriched followed by massive parallel next generation sequencing. Methods We enriched and re-sequenced continuous genomic regions comprising FTO, MC4R, TMEM18, SDCCAG8, TKNS, MSRA and TBC1D1 in a screening sample of 196 extremely obese children and adolescents with age and sex specific body mass index (BMI) >= 99th percentile and 176 lean adults (BMI <= 15th percentile). 22 variants were confirmed by Sanger sequencing. Genotyping was performed in up to 705 independent obesity trios (extremely obese child and both parents), 243 extremely obese cases and 261 lean adults. Results and Conclusion We detected 20 different non-synonymous variants, one frame shift and one nonsense mutation in the 7 continuous genomic regions in study groups of different weight extremes. For SNP Arg695Cys (rs58983546) in TBC1D1 we detected nominal association with obesity (p(TDT) = 0.03 in 705 trios). Eleven of the variants were rare, thus were only detected heterozygously in up to ten individual(s) of the complete screening sample of 372 individuals. Two of them (in FTO and MSRA) were found in lean individuals, nine in extremely obese. In silico analyses of the 11 variants did not reveal functional implications for the mutations. Concordant with our hypothesis we detected a rare variant that potentially leads to loss of FTO function in a lean individual. For TBC1D1, in contrary to our hypothesis, the loss of function variant (Arg443Stop) was found in an obese individual. Functional in vitro studies are warranted. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 423 KW - melanocortin-4 receptor gene KW - stimulated glucose-uptake KW - life-style intervention KW - onset extreme obesity KW - genome-wide analysis KW - mass index KW - FTO gene KW - fat mass KW - overweight children KW - diabetes-melllitus Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-410289 ER - TY - GEN A1 - Lagriffoul, Fabien A1 - Andres, Benjamin T1 - Combining task and motion planning BT - a culprit detection problem T2 - The international journal of robotics research N2 - Solving problems combining task and motion planning requires searching across a symbolic search space and a geometric search space. Because of the semantic gap between symbolic and geometric representations, symbolic sequences of actions are not guaranteed to be geometrically feasible. This compels us to search in the combined search space, in which frequent backtracks between symbolic and geometric levels make the search inefficient. We address this problem by guiding symbolic search with rich information extracted from the geometric level through culprit detection mechanisms. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 422 KW - combined task and motion planning KW - manipulation planning Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-405126 VL - 35 IS - 8 ER - TY - GEN A1 - Niemeyer, Bastian A1 - Herzschuh, Ulrike A1 - Pestryakova, Luidmila Agafyevna T1 - Vegetation and lake changes on the southern Taymyr peninsula, northern Siberia, during the last 300 years inferred from pollen and Pediastrum green algae records T2 - The Holocene N2 - Siberian arctic vegetation and lake water communities, known for their temperature dependence, are expected to be particularly impacted by recent climate change and high warming rates. However, decadal information on the nature and strength of recent vegetation change and its time lag to climate signals are rare. In this study, we present a Pb-210/Cs-137 dated pollen and Pediastrum species record from a unnamed lake in the south of the Taymyr peninsula covering the period from AD 1706 to 2011. Thirty-nine palynomorphs and 10 morphotypes of Pediastrum species were studied to assess changes in vegetation and lake conditions as probable responses to climate change. We compared the pollen record with Pediastrum species, which we consider to be important proxies of climate changes. Three pollen assemblage zones characterised by Betula nana, Alnus viridis and Larix gmelinii (1706-1808); herbs such as Cyperaceae, Artemisia or Senecio (1808-1879), and higher abundance of Larix pollen (1955-2011) are visible. Also, three Pediastrum assemblage zones show changes of aquatic conditions: higher abundances of Pediastrum boryanum var. brevicorne (1706-1802); medium abundances of P. kawraiskyi and P. integrum (1802-1840 and 1920-1980), indicating cooler conditions while less eutrophic conditions are indicated by P. boryanum, and a mainly balanced composition with only small changes of cold- and warm-adapted Pediastrum species (1965-2011). In general, compositional Pediastrum species turnover is slightly higher than that indicated by pollen data (0.54 vs 0.34 SD), but both are only minor for this treeline location. In conclusion, the relevance of differentiation of Pediastrum species is promising and can give further insights into the relationship between lakes and their surrounding vegetation transferred onto climatic conditions. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 421 KW - morphotypes KW - Pediastrum KW - pollen KW - Siberia KW - treeline KW - vegetation Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-404882 VL - 25 IS - 4 ER - TY - GEN A1 - Cao, Xianyong A1 - Herzschuh, Ulrike A1 - Ni, Jian A1 - Zhao, Yan A1 - Böhmer, Thomas T1 - Spatial and temporal distributions of major tree taxa in eastern continental Asia during the last 22,000 years T2 - The Holocene N2 - This study investigates the spatial and temporal distributions of 14 key arboreal taxa and their driving forces during the last 22,000 calendar years before ad 1950 (kyr BP) using a taxonomically harmonized and temporally standardized fossil pollen dataset with a 500-year resolution from the eastern part of continental Asia. Logistic regression was used to estimate pollen abundance thresholds for vegetation occurrence (presence or dominance), based on modern pollen data and present ranges of 14 taxa in China. Our investigation reveals marked changes in spatial and temporal distributions of the major arboreal taxa. The thermophilous (Castanea, Castanopsis, Cyclobalanopsis, Fagus, Pterocarya) and eurythermal (Juglans, Quercus, Tilia, Ulmus) broadleaved tree taxa were restricted to the current tropical or subtropical areas of China during the Last Glacial Maximum (LGM) and spread northward since c. 14.5 kyr BP. Betula and conifer taxa (Abies, Picea, Pinus), in contrast, retained a wider distribution during the LGM and showed no distinct expansion direction during the Late Glacial. Since the late mid-Holocene, the abundance but not the spatial extent of most trees decreased. The changes in spatial and temporal distributions for the 14 taxa are a reflection of climate changes, in particular monsoonal moisture, and, in the late Holocene, human impact. The post-LGM expansion patterns in eastern continental China seem to be different from those reported for Europe and North America, for example, the westward spread for eurythermal broadleaved taxa. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 417 KW - China KW - Holocene KW - Last Glacial Maximum KW - pollen mapping KW - vegetation expansion Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-404176 VL - 25 IS - 1 ER - TY - GEN A1 - Battarbee, Richard W. A1 - Lamb, Henry F. A1 - Bennett, Keith A1 - Edwards, Mary A1 - Bjune, Anne E. A1 - Kaland, Peter E. A1 - Berglund, Björn E. A1 - Lotter, André F. A1 - Seppä, Heikki A1 - Willis, Kathy J. A1 - Herzschuh, Ulrike A1 - Birks, Hilary H. T1 - John Birks BT - pioneer in quantitative palaeoecology T2 - The Holocene N2 - We describe the career of John Birks as a pioneering scientist who has, over a career spanning five decades, transformed palaeoecology from a largely descriptive to a rigorous quantitative science relevant to contemporary questions in ecology and environmental change. We review his influence on students and colleagues not only at Cambridge and Bergen Universities, his places of primary employment, but also on individuals and research groups in Europe and North America. We also introduce the collection of papers that we have assembled in his honour. The papers are written by his former students and close colleagues and span many of the areas of palaeoecology to which John himself has made major contributions. These include the relationship between ecology and palaeoecology, late-glacial and Holocene palaeoecology, ecological succession, climate change and vegetation history, the role of palaeoecological techniques in reconstructing and understanding the impact of human activity on terrestrial and freshwater ecosystems and numerical analysis of multivariate palaeoecological data. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 420 KW - climate change KW - ecosystem history KW - Holocene KW - late-glacial KW - numerical data analysis KW - palaeoecology KW - palaeolimnology Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-404544 ER - TY - GEN A1 - Groop, Per-Henrik A1 - Cooper, Mark E. A1 - Perkovic, Vlado A1 - Sharma, Kumar A1 - Schernthaner, Guntram A1 - Haneda, Masakazu A1 - Hocher, Berthold A1 - Gordat, Maud A1 - Cescutti, Jessica A1 - Woerle, Hans-Juergen A1 - von Eynatten, Maximilian T1 - Dipeptidyl peptidase-4 inhibition with linagliptin and effects on hyperglycaemia and albuminuria in patients with type 2 diabetes and renal dysfunction BT - Rationale and design of the MARLINA–T2D TM trial T2 - Diabetes & vascular disease research N2 - Efficacy, Safety & Modification of Albuminuria in Type 2 Diabetes Subjects with Renal Disease with LINAgliptin (MARLINA-T2D), a multicentre, multinational, randomized, double-blind, placebo-controlled, parallel-group, phase 3b clinical trial, aims to further define the potential renal effects of dipeptidyl peptidase-4 inhibition beyond glycaemic control. A total of 350 eligible individuals with inadequately controlled type 2 diabetes and evidence of renal disease are planned to be randomized in a 1:1 ratio to receive either linagliptin 5mg or placebo in addition to their stable glucose-lowering background therapy for 24weeks. Two predefined main endpoints will be tested in a hierarchical manner: (1) change from baseline in glycated haemoglobin and (2) time-weighted average of percentage change from baseline in urinary albumin-to-creatinine ratio. Both endpoints are sufficiently powered to test for superiority versus placebo after 24weeks with =0.05. MARLINA-T2D is the first of its class to prospectively explore both the glucose- and albuminuria-lowering potential of a dipeptidyl peptidase-4 inhibitor in patients with type 2 diabetes and evidence of renal disease. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 419 KW - Dipeptidyl peptidase-4 inhibition KW - linagliptin KW - type 2 diabetes KW - chronic kidney disease KW - glycaemic control KW - albuminuria Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-404460 ER - TY - GEN A1 - Tian, Fang A1 - Herzschuh, Ulrike A1 - Mischke, Steffen A1 - Schlütz, Frank T1 - What drives the recent intensified vegetation degradation in Mongolia BT - Climate change or human activity? T2 - The Holocene N2 - This study examines the course and driving forces of recent vegetation change in the Mongolian steppe. A sediment core covering the last 55years from a small closed-basin lake in central Mongolia was analyzed for its multi-proxy record at annual resolution. Pollen analysis shows that highest abundances of planted Poaceae and highest vegetation diversity occurred during 1977-1992, reflecting agricultural development in the lake area. A decrease in diversity and an increase in Artemisia abundance after 1992 indicate enhanced vegetation degradation in recent times, most probably because of overgrazing and farmland abandonment. Human impact is the main factor for the vegetation degradation within the past decades as revealed by a series of redundancy analyses, while climate change and soil erosion play subordinate roles. High Pediastrum (a green algae) influx, high atomic total organic carbon/total nitrogen (TOC/TN) ratios, abundant coarse detrital grains, and the decrease of C-13(org) and N-15 since about 1977 but particularly after 1992 indicate that abundant terrestrial organic matter and nutrients were transported into the lake and caused lake eutrophication, presumably because of intensified land use. Thus, we infer that the transition to a market economy in Mongolia since the early 1990s not only caused dramatic vegetation degradation but also affected the lake ecosystem through anthropogenic changes in the catchment area. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 418 KW - central Mongolia KW - grain size KW - human impact KW - lake eutrophication KW - pollen KW - vegetation degradation Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-404201 ER - TY - GEN A1 - Illner, Anne-Kathrin A1 - Nöthlings, Ute A1 - Wagner, Karen A1 - Ward, Heather A1 - Boeing, Heiner T1 - The Assessment of Individual Usual Food Intake in Large-Scale Prospective Studies N2 - Recent research has called into question the current practice to estimate individual usual food intake in large-scale studies. In such studies, usual food intake has been defined as diet over the past year. The aim of this review is to summarise the concepts of dietary assessment methods providing food intake data over this time period. A conceptualised framework is given to help researchers to understand the more recent developments to improve dietary assessment in large-scale prospective studies, and also to help to spot the gaps that need to be addressed in future methodological research. The conceptual framework illustrates the current options for the assessment of an individual’s food consumption over 1 year. Ideally, a person’s food intake on each day of this year should be assessed. Due to participants’ burden, and organisational and financial constraints, however, the options are limited to directly requesting the long-term average (e.g. food frequency questionnaires), or selecting a few days with detailed food consumption measurements (e.g. 24-hour dietary recalls) or using snapshot techniques (e.g. barcode scanning of purchases). It seems necessary and important to further evaluate the performance of statistical modelling of the individual usual food intake from all available sources. Future dietary assessment might profit from the growing prominence of internet and telecommunication technologies to further enhance the available data on food consumption for each study participant. Research is crucial to investigate the performance of innovative assessment tools. However, the self-reported nature of the data itself will always lead to bias. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 341 KW - Dietary assessment KW - Dietary questionnaires KW - Dietary recalls KW - Epidemiologic studies KW - Food frequency questionnaire KW - Food intake KW - Large-scale studies on food intake KW - Statistical modelling Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-399840 ER - TY - GEN A1 - Prüfer, Nicole A1 - Kleuser, Burkhard A1 - van der Giet, Markus T1 - The role of serum amyloid A and sphingosine-1-phosphate on high-density lipoprotein functionality N2 - The high-density lipoprotein (HDL) is one of the most important endogenous cardiovascular protective markers. HDL is an attractive target in the search for new pharmaceutical therapies and in the prevention of cardiovascular events. Some of HDL’s anti-atherogenic properties are related to the signaling molecule sphingosine-1-phosphate (S1P), which plays an important role in vascular homeostasis. However, for different patient populations it seems more complicated. Significant changes in HDL’s protective potency are reduced under pathologic conditions and HDL might even serve as a proatherogenic particle. Under uremic conditions especially there is a change in the compounds associated with HDL. S1P is reduced and acute phase proteins such as serum amyloid A (SAA) are found to be elevated in HDL. The conversion of HDL in inflammation changes the functional properties of HDL. High amounts of SAA are associated with the occurrence of cardiovascular diseases such as atherosclerosis. SAA has potent pro-atherogenic properties, which may have impact on HDL’s biological functions, including cholesterol efflux capacity, antioxidative and anti-inflammatory activities. This review focuses on two molecules that affect the functionality of HDL. The balance between functional and dysfunctional HDL is disturbed after the loss of the protective sphingolipid molecule S1P and the accumulation of the acute-phase protein SAA. This review also summarizes the biological activities of lipid-free and lipid-bound SAA and its impact on HDL function. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 340 KW - atherosclerosis KW - high-density lipoprotein (HDL) KW - inflammation KW - serum amyloid A (SAA) KW - sphingosine-1-phosphate (S1P) Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-398648 ER - TY - INPR A1 - Prasse, Paul A1 - Gruben, Gerrit A1 - Machlika, Lukas A1 - Pevny, Tomas A1 - Sofka, Michal A1 - Scheffer, Tobias T1 - Malware Detection by HTTPS Traffic Analysis N2 - In order to evade detection by network-traffic analysis, a growing proportion of malware uses the encrypted HTTPS protocol. We explore the problem of detecting malware on client computers based on HTTPS traffic analysis. In this setting, malware has to be detected based on the host IP address, ports, timestamp, and data volume information of TCP/IP packets that are sent and received by all the applications on the client. We develop a scalable protocol that allows us to collect network flows of known malicious and benign applications as training data and derive a malware-detection method based on a neural networks and sequence classification. We study the method's ability to detect known and new, unknown malware in a large-scale empirical study. KW - machine learning KW - computer security Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-100942 ER - TY - JOUR A1 - St-Louis, N. T1 - Studying Large and Small Scale Wind Asymmetries with Spectroscopy and Polarimetry JF - Wolf-Rayet Stars : Proceedings of an International Workshop held in Potsdam, Germany, 1.–5. June 2015 N2 - In this paper, I review observational evidence from spectroscopy and polarimetry for the presence of small and large scale structure in the winds of Wolf-Rayet (WR) stars. Clumping is known to be ubiquitous in the winds of these stars and many of its characteristics can be deduced from spectroscopic time-series and polarisation lightcurves. Conversely, a much smaller fraction of WR stars have been shown to harbour larger scale structures in their wind (∼ 1/5) while they are thought to be present is the winds of most of their O-star ancestors. The reason for this difference is still unknown. Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-87726 SP - 79 EP - 84 ER - TY - THES A1 - Albrecht, Steve T1 - Generation, recombination and extraction of charges in polymer T1 - Generierung, Rekombination und Extraktion von Ladungen in Polymer BT - fullerene bulk heterojunction solar cells BT - Fulleren Mischsolarzellen N2 - A dramatic efficiency improvement of bulk heterojunction solar cells based on electron-donating conjugated polymers in combination with soluble fullerene derivatives has been achieved over the past years. Certified and reported power conversion efficiencies now reach over 9% for single junctions and exceed the 10% benchmark for tandem solar cells. This trend brightens the vision of organic photovoltaics becoming competitive with inorganic solar cells including the realization of low-cost and large-area organic photovoltaics. For the best performing organic materials systems, the yield of charge generation can be very efficient. However, a detailed understanding of the free charge carrier generation mechanisms at the donor acceptor interface and the energy loss associated with it needs to be established. Moreover, organic solar cells are limited by the competition between charge extraction and free charge recombination, accounting for further efficiency losses. A conclusive picture and the development of precise methodologies for investigating the fundamental processes in organic solar cells are crucial for future material design, efficiency optimization, and the implementation of organic solar cells into commercial products. In order to advance the development of organic photovoltaics, my thesis focuses on the comprehensive understanding of charge generation, recombination and extraction in organic bulk heterojunction solar cells summarized in 6 chapters on the cumulative basis of 7 individual publications. The general motivation guiding this work was the realization of an efficient hybrid inorganic/organic tandem solar cell with sub-cells made from amorphous hydrogenated silicon and organic bulk heterojunctions. To realize this project aim, the focus was directed to the low band-gap copolymer PCPDTBT and its derivatives, resulting in the examination of the charge carrier dynamics in PCPDTBT:PC70BM blends in relation to by the blend morphology. The phase separation in this blend can be controlled by the processing additive diiodooctane, enhancing domain purity and size. The quantitative investigation of the free charge formation was realized by utilizing and improving the time delayed collection field technique. Interestingly, a pronounced field dependence of the free carrier generation for all blends is found, with the field dependence being stronger without the additive. Also, the bimolecular recombination coefficient for both blends is rather high and increases with decreasing internal field which we suggest to be caused by a negative field dependence of mobility. The additive speeds up charge extraction which is rationalized by the threefold increase in mobility. By fluorine attachment within the electron deficient subunit of PCPDTBT, a new polymer F-PCPDTBT is designed. This new material is characterized by a stronger tendency to aggregate as compared to non-fluorinated PCPDTBT. Our measurements show that for F-PCPDTBT:PCBM blends the charge carrier generation becomes more efficient and the field-dependence of free charge carrier generation is weakened. The stronger tendency to aggregate induced by the fluorination also leads to increased polymer rich domains, accompanied in a threefold reduction in the non-geminate recombination coefficient at conditions of open circuit. The size of the polymer domains is nicely correlated to the field-dependence of charge generation and the Langevin reduction factor, which highlights the importance of the domain size and domain purity for efficient charge carrier generation. In total, fluorination of PCPDTBT causes the PCE to increase from 3.6 to 6.1% due to enhanced fill factor, short circuit current and open circuit voltage. Further optimization of the blend ratio, active layer thickness, and polymer molecular weight resulted in 6.6% efficiency for F-PCPDTBT:PC70BM solar cells. Interestingly, the double fluorinated version 2F-PCPDTBT exhibited poorer FF despite a further reduction of geminate and non-geminate recombination losses. To further analyze this finding, a new technique is developed that measures the effective extraction mobility under charge carrier densities and electrical fields comparable to solar cell operation conditions. This method involves the bias enhanced charge extraction technique. With the knowledge of the carrier density under different electrical field and illumination conditions, a conclusive picture of the changes in charge carrier dynamics leading to differences in the fill factor upon fluorination of PCPDTBT is attained. The more efficient charge generation and reduced recombination with fluorination is counterbalanced by a decreased extraction mobility. Thus, the highest fill factor of 60% and efficiency of 6.6% is reached for F-PCPDTBT blends, while 2F-PCPDTBT blends have only moderate fill factors of 54% caused by the lower effective extraction mobility, limiting the efficiency to 6.5%. To understand the details of the charge generation mechanism and the related losses, we evaluated the yield and field-dependence of free charge generation using time delayed collection field in combination with sensitive measurements of the external quantum efficiency and absorption coefficients for a variety of blends. Importantly, both the yield and field-dependence of free charge generation is found to be unaffected by excitation energy, including direct charge transfer excitation below the optical band gap. To access the non-detectable absorption at energies of the relaxed charge transfer emission, the absorption was reconstructed from the CT emission, induced via the recombination of thermalized charges in electroluminescence. For a variety of blends, the quantum yield at energies of charge transfer emission was identical to excitations with energies well above the optical band-gap. Thus, the generation proceeds via the split-up of the thermalized charge transfer states in working solar cells. Further measurements were conducted on blends with fine-tuned energy levels and similar blend morphologies by using different fullerene derivatives. A direct correlation between the efficiency of free carrier generation and the energy difference of the relaxed charge transfer state relative to the energy of the charge separated state is found. These findings open up new guidelines for future material design as new high efficiency materials require a minimum energetic offset between charge transfer and the charge separated state while keeping the HOMO level (and LUMO level) difference between donor and acceptor as small as possible. N2 - Die Effizienz von organischen Mischsolarzellen ist in den letzten Jahren durch die Entwicklung neuer halbleitender Materialen beträchtlich gestiegen. Die besten organischen Mischsolarzellen zeigen heute sehr effiziente Ladungsgeneration. Dennoch ist die genaue Funktionsweise der fundamentalen Ladungsgenerationsschritte nicht bis ins Detail verstanden. Zur weiteren Steigerung der Wirkungsgrade und für die kommerzielle Nutzung organischer Mischsolarzellen, sind ein übergreifendes Verständnis der Funktionsweise und die Entwicklung neuer Messmethoden unumgänglich. Die vorliegende Arbeit ist auf diese Fragestellung fokussiert: die Arbeit soll helfen, fundierte Kenntnisse der Ladungsträgererzeugung, der Rekombination und der Extraktion freier Ladungsträger in organischen Mischsolarzellen zu erlangen. Zuerst wurde der Fokus auf Mischsolarzellen mit dem Polymer PCPDTBT gelegt. Dieses Polymer durchmischt stark mit dem Fulleren-Derivat PCBM. Durch Verwendung eines Lösungsmitteladditives kann die Phasenentmischung und damit der Wirkungsgrad deutlich gesteigert werden. Die Generations- und Rekombinationsprozesse wurden mittels zeitverzögerter Sammelfeld-Methode untersucht. Dabei wurde zum ersten Mal eine signifikante Feldabhängigkeit der Ladungsträger-erzeugung entdeckt. Interessanterweise korreliert diese Feldabhängigkeit mit der Domänengröße also dem Grad der Entmischung. In größeren und reineren Polymerphasen ist die Feldabhängigkeit kleiner und die Extraktion verbessert, was zum höheren Wirkungsgrad führt. In einem weiteren Schritt wurde untersucht, wie sich die Fluorinierung des Polymers PCPDTBT auf das Bauteilverhalten auswirkt. Durch Fluorinierung des Polymer-Rückgrats von PCPDTBT wurden zum einen die Energieniveaus abgesenkt, ohne dass sich das Absorptionsverhalten geändert hat. Zum anderen wurde die Phasenentmischung beeinflusst. Mit Fluorinierung entstehen größere, reinere und kristallinere Polymerphasen. Dadurch wird die Generation der Ladungsträger effizienter und die Rekombination stärker unterdrückt. Eindeutige Korrelationen zwischen Phasengröße und Generationseffizienz konnten hierbei gefunden werden. Insgesamt steigt die Bauteileffizienz bei Verwendung von fluoriniertem PCPDTBT von 3.6 auf 6.1% bei gleicher Prozessierung. Durch weitere Optimierung konnte die Effizienz auf 6.6% für fluoriniertes PCPDTBT gesteigert werden. Eine di-Fluorinierung von PCPDTBT limitiert die Bauteileffizienz, speziell den Füll Faktor, trotz der Entstehung noch reinerer Polymerphasen. Eine genauere Analyse der Extraktionseffizienz mittels der genauen Bestimmung der Gleichgewichts-Ladungsträgerdichte für verschiedenen Beleuchtungs- und Feldsituationen zeigte, dass die Fluorinierung die Effizienz der Extraktion deutlich absenkt und dadurch bei di-Fluorinierung die Rekombinationsverluste im Bauteil trotz verlangsamter Rekombination ansteigen. Um weitere fundierte Kenntnisse der Ladungsgeneration zu gewinnen, wurde die Ladungsgeneration für verschiedene Gemische mit veränderten Energieniveaus in Abhängigkeit der Anregungsenergie untersucht. Dabei wurde die wichtige Kenntnis erlangt, dass die Photonenenergie, unabhängig von der Lage der Energieniveaus, keinen Einfluss auf die Effizienz der Generation hat und somit die Bildung freier Ladungsträger aus relaxierten Transferzuständen erfolgt. Dadurch ergeben sich neue Leitlinien für zukünftige Materialeigenschaften mit optimierten Wirkungsgraden. KW - organic solar cells KW - bulk heterojunction KW - charge carrier dynamics KW - charge generation KW - non geminate recombination KW - Generierung von Ladungsträgern KW - nicht geminale Rekombination KW - Extraktion KW - Polymer KW - Fulleren Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-72285 ER - TY - GEN A1 - Gröbel, Thomas A1 - Stange, Irina T1 - Die Geschichte des Standortes Potsdam-Golm 1935-1991 N2 - Die Ausstellung "Die Geschichte des Standortes Potsdam-Golm 1935 bis 1991" zeigt die wechselvolle Historie des jetzigen Universitäts- und Wissenschaftsstandortes. Die Ursprünge finden sich in der 1935 errichteten General-Wever-Kaserne. Nach der Beendigung des Zweiten Weltkrieges und bis zur Wende nutzten sowohl die sowjetische Armee als auch das Ministerium für Staatssicherheit das Gelände. Thematisiert werden unter anderem die militärische Zentralregion Brandenburg, die Herausbildung der Geheimdiensthochschule von 1951 bis 1990, die Lehre an dieser Einrichtung, das Studienleben und die Forschungstätigkeit sowie die Nutzung des Standortes nach 1990. Die Ausstellung besteht aus 13 mit zahlreichen Fotos versehenen Tafeln. Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-72648 ER - TY - THES A1 - Mauri, Marco T1 - A model for sigma factor competition in bacterial cells N2 - Bacteria respond to changing environmental conditions by switching the global pattern of expressed genes. In response to specific environmental stresses the cell activates several stress-specific molecules such as sigma factors. They reversibly bind the RNA polymerase to form the so-called holoenzyme and direct it towards the appropriate stress response genes. In exponentially growing E. coli cells, the majority of the transcriptional activity is carried out by the housekeeping sigma factor, while stress responses are often under the control of alternative sigma factors. Different sigma factors compete for binding to a limited pool of RNA polymerase (RNAP) core enzymes, providing a mechanism for cross talk between genes or gene classes via the sharing of expression machinery. To quantitatively analyze the contribution of sigma factor competition to global changes in gene expression, we develop a thermodynamic model that describes binding between sigma factors and core RNAP at equilibrium, transcription, non-specific binding to DNA and the modulation of the availability of the molecular components. Association of housekeeping sigma factor to RNAP is generally favored by its abundance and higher binding affinity to the core. In order to promote transcription by alternative sigma subunits, the bacterial cell modulates the transcriptional efficiency in a reversible manner through several strategies such as anti-sigma factors, 6S RNA and generally any kind of transcriptional regulators (e.g. activators or inhibitors). By shifting the outcome of sigma factor competition for the core, these modulators bias the transcriptional program of the cell. The model is validated by comparison with in vitro competition experiments, with which excellent agreement is found. We observe that transcription is affected via the modulation of the concentrations of the different types of holoenzymes, so saturated promoters are only weakly affected by sigma factor competition. However, in case of overlapping promoters or promoters recognized by two types of sigma factors, we find that even saturated promoters are strongly affected. Active transcription effectively lowers the affinity between the sigma factor driving it and the core RNAP, resulting in complex cross talk effects and raising the question of how their in vitro measure is relevant in the cell. We also estimate that sigma factor competition is not strongly affected by non-specific binding of core RNAPs, sigma factors, and holoenzymes to DNA. Finally, we analyze the role of increased core RNAP availability upon the shut-down of ribosomal RNA transcription during stringent response. We find that passive up-regulation of alternative sigma-dependent transcription is not only possible, but also displays hypersensitivity based on the sigma factor competition. Our theoretical analysis thus provides support for a significant role of passive control during that global switch of the gene expression program and gives new insights into RNAP partitioning in the cell. N2 - Bakterien reagieren auf Aenderungen in ihren Umgebungsbedingungen indem sie global das Genexpressionsprogramm umschalten. Die Zelle aktiviert, als spezifische Reaktion auf Stressbedingungen, mehrere charakteristische Molekuele wie zum Beispiel die Sigmafaktoren. Diese binden reversibel an die RNA Polymerase (RNAP), mit der sie einen Komplex bilden das sogenannte Holoenzym und steuern sie als Reaktion auf den Stress zu den entsprechenden Genen. In exponentiell wachsenden E. Coli Zellen wird das Meiste der Transkription von einem sogenannten Haushaltssigmafaktor organisiert. Wohingegen Stressreaktionen haeufig von alternativen Sigmafaktoren kontrolliert werden. Die verschiedenen Sigmafaktoren konkurrieren um einen begrenzten Pool von RNAP Coreenzymen, womit die Expression einzelner Gene oder Genklassen beeinflusst wird, da sie sich die Maschienerie teilen. Um den Beitrag der Sigmafaktorkonkurrenz an der gesamten Veraenderung der Genexpression quantitativ zu analysieren, haben wir ein theoretisches Modell entwickelt, welches das Binden von Sigmafaktoren mit RNAP Coreenzymen im gleichgewicht, die Transkription, das nichtspezifische Binden an die DNA sowie die Modulation verfuegbarer molekularer Komponenten beschreibt. Normalerweise wird die Assoziation des Haushaltssigmafaktors mit dem RNAP Coreenzym beguenstigt durch dessen grosse Anzahl und die hohe Bindungsaffinitaet. Daher nutzen bakterielle Zellen verschiedene, reversibele Strategien um die Transkription durch alternative Holoenzyme zu foerdern. Dazu gehoeren Anti-Sigmafaktoren, 6S RNA und generell beliebige Transkriptionsregulatoren (z.B.: Aktivatoren oder Repressoren). Sie beeinflussen das Transkriptionsprogramm der Zelle indem sie das Resultat der Sigmafaktorkonkurrenz um die RNAP Coreenzyme zugunsten eines der Sigmafaktoren verschieben. Das Modell kann validiert werden durch Vergleiche mit in vitro Konkurrenzexperimenten, die exzellente uebereinstimmung zeigen. Wir koennen feststellen, dass die Transkription durch Konzentrationsaenderungen der verschiedenen Holoenzyme beeinflusst wird, daher ist der Effekt der Sigmafaktorkonkurrenz klein bei saturierten Promotoren. Was sich jedoch aendert bei sich ueberlappenden Promotoren oder Promotoren, die von zwei verschiedenen Sigmafaktoren erkannt werden. In diesen Faellen sehen wir einen grossen Effekt. Transkription fuehrt zu effektiv abgesekten Affinitaet zwischen den zugehoerigen Sigmafaktoren und den RNAP Coreenzymen, was zu komplizierten Verhalten fuehrt und die Frage aufwirft, inwieweit in vitro gemessenen Effekte in der Zelle wiederzufinden sind. Wir koennen den Einfluss nichtspezifischen Bindens der RNAPs, der Sigmafaktoren und der Holoenzyme an die DNA abschaetzen. Als letztes analysieren wir die Konkurrenz waehrend der "Stringent Response". Hierbei wird die Transkription der ribosomalen RNA unterbrochen was die Anzahl der freien RNAP Coreenzyme stark erhoeht. Wir sehen, dass das passive Hochregeln des alternativen sigmafaktorabhaengigen Transkriptionsprogramms durch Sigmafaktorkokurrenz moeglich und sogar hypersensitiv ist. Unsere theoretische Analyse zeigt, dass die passive Kontrolle in diesem Fall eine signifikante Rolle im globalen umschalten des Transkriptionsprogramms spielt und liefert neue Erkenntnisse zur RNAP Partitionierung in der Zelle. T2 - Ein Modell für die Konkurrenz zwischen Sigmafaktoren in Bakterienzellen KW - biophysics KW - systems biology KW - gene regulation KW - stress response KW - Biophysik KW - Systembiologie KW - Genregulation KW - Stressantwort Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-72098 ER - TY - THES A1 - Widdrat, Marc T1 - Formation and alteration of magnetite nanoparticles N2 - Magnetite is an iron oxide, which is ubiquitous in rocks and is usually deposited as small nanoparticulate matter among other rock material. It differs from most other iron oxides because it contains divalent and trivalent iron. Consequently, it has a special crystal structure and unique magnetic properties. These properties are used for paleoclimatic reconstructions where naturally occurring magnetite helps understanding former geological ages. Further on, magnetic properties are used in bio- and nanotechnological applications –synthetic magnetite serves as a contrast agent in MRI, is exploited in biosensing, hyperthermia or is used in storage media. Magnetic properties are strongly size-dependent and achieving size control under preferably mild synthesis conditions is of interest in order to obtain particles with required properties. By using a custom-made setup, it was possible to synthesize stable single domain magnetite nanoparticles with the co-precipitation method. Furthermore, it was shown that magnetite formation is temperature-dependent, resulting in larger particles at higher temperatures. However, mechanistic approaches about the details are incomplete. Formation of magnetite from solution was shown to occur from nanoparticulate matter rather than solvated ions. The theoretical framework of such processes has only started to be described, partly due to the lack of kinetic or thermodynamic data. Synthesis of magnetite nanoparticles at different temperatures was performed and the Arrhenius plot was used determine an activation energy for crystal growth of 28.4 kJ mol-1, which led to the conclusion that nanoparticle diffusion is the rate-determining step. Furthermore, a study of the alteration of magnetite particles of different sizes as a function of their storage conditions is presented. The magnetic properties depend not only on particle size but also depend on the structure of the oxide, because magnetite oxidizes to maghemite under environmental conditions. The dynamics of this process have not been well described. Smaller nanoparticles are shown to oxidize more rapidly than larger ones and the lower the storage temperature, the lower the measured oxidation. In addition, the magnetic properties of the altered particles are not decreased dramatically, thus suggesting that this alteration will not impact the use of such nanoparticles as medical carriers. Finally, the effect of biological additives on magnetite formation was investigated. Magnetotactic bacteria¬¬ are able to synthesize and align magnetite nanoparticles of well-defined size and morphology due to the involvement of special proteins with specific binding properties. Based on this model of morphology control, phage display experiments were performed to determine peptide sequences that preferably bind to (111)-magnetite faces. The aim was to control the shape of magnetite nanoparticles during the formation. Magnetotactic bacteria are also able to control the intracellular redox potential with proteins called magnetochromes. MamP is such a protein and its oxidizing nature was studied in vitro via biomimetic magnetite formation experiments based on ferrous ions. Magnetite and further trivalent oxides were found. This work helps understanding basic mechanisms of magnetite formation and gives insight into non-classical crystal growth. In addition, it is shown that alteration of magnetite nanoparticles is mainly based on oxidation to maghemite and does not significantly influence the magnetic properties. Finally, biomimetic experiments help understanding the role of MamP within the bacteria and furthermore, a first step was performed to achieve morphology control in magnetite formation via co-precipitation. N2 - Magnetit ist ein Eisenoxid, welches ein häufiger Bestandteil in Mineralen ist und normalerweise als nm-großen Teilchen unter anderem Gesteinsmaterial verteilt ist. Es unterscheidet sich in seiner Zusammensetzung von den meisten anderen Eisenoxiden, da es sowohl divalente als auch trivalente Eisenoxide enthält. Die Folge ist eine besondere Kristallstruktur und somit einzigartige magnetische Eigenschaften. Diese Eigenschaften werden bei paläoklimatologischen Rekonstruktionen genutzt, bei denen natürlich vorkommender Magnetit hilft, die Bedingungen vergangener Zeitalter zu verstehen. Weiterhin werden die magnetischen Eigenschaften in bio- und nanotechnologischen Anwendungen genutzt. Synthetischer Magnetit dient als Kontrastmittel in der MRT, in biologischen Sensorsystemen, bei Hyperthermie-Behandlungen oder als Grundlage für Datenspeichermedien. Da die magnetischen Eigenschaften im nm-Bereich stark von der Größe der Teilchen abhängen, ist eine möglichst präzise Kontrolle der Größe von enormer Bedeutung. Mit Hilfe eines maßgefertigten Syntheseaufbaus war es möglich durch Mitfällung Teilchen oberhalb des superparamagnetischen Schwellenwerts zu produzieren. Außerdem konnte eine Temperaturabhängigkeit gezeigt werden; höhere Temperaturen während der Magnetit-Bildung resultieren in größeren Teilchen. Der Prozess dahinter ist jedoch noch nicht vollständig geklärt. Die Bildung von Magnetit in wässriger Lösung erfolgt nicht über Ionen, sondern wird über die zwischenzeitliche Bildung von nm-großen Vorläufern realisiert. Unter Berücksichtigung dieser Vorläufer wurde die Bildung von Magnetit in einen neuen theoretischen Rahmen gesetzt, jedoch mangelt es bisher an kinetischen Daten. Durch die Synthese von Magnetit bei unterschiedlichen Temperaturen konnte mit Hilfe des Arrhenius-Plots eine Aktivierungsenergie für das Kristallwachstum von 28.4 kJ mol-1 ermittelt werden. Dieser Wert deutet auf einen diffusionskontrollierten Prozess hin. Auch die Alterung von Magnetit-Nanopartikeln spielt eine wichtige Rolle, da Magnetit unter Umgebungsbedingungen zu Maghämit oxidiert wird. Deshalb wird hier eine Studie zur Alterung von Magnetit-Nanopartikeln unterschiedlicher Größe unter verschiedenen Lagerungsbedingungen präsentiert. Kleine Teilchen tendieren zu stärkerer Oxidation im selben Zeitraum und weiterhin oxidieren die Teilchen weniger, je geringer die Temperatur ist. Da Magnetit und Maghämit sich in ihren magnetischen Eigenschaften nur geringfügig unterscheiden, werden diese durch den oxidativen Prozess nur geringfügig beeinflusst. Als letztes wurde der Einfluss biologischer Zusätze zur Magnetit-Bildung überprüft. Magnetotaktische Bakterien sind in der Lage, Magnetit-Nanopartikel von definierter Größe und Morphologie herzustellen, involviert sind eine Reihe von spezifischen Proteinen mit speziellen Bindungseigenschaften. Darauf basierend wurden, zur Selektion spezifischer Peptidsequenzen, Phagen-Display-Experimente an einer (111)-Magnetitoberfläche durchgeführt. Diese sollten eine Morphologie-Kontrolle während der Magnetit-Synthese ermöglichen. Magnetotaktische Bakterien sind außerdem in der Lage das intrazelluläre Redox-Potential mit Hilfe von Proteinen, den Magnetochromen, zu kontrollieren. MamP ist eines dieser Proteine und sein oxidatives Potential wurde in einer in vitro-Magnetit-Synthese überprüft. Der Einsatz von FeII ergab sowohl Magnetit als auch trivalente Eisenoxide als Produkte. Diese Arbeit ermöglicht einen Einblick in die grundlegenden Mechanismen der Magnetit-Bildung, welche unter nicht-klassischen Bedingungen abläuft. Die Alterung der Nanopartikel, welche hauptsächlich die Oxidation zu Maghämit beinhaltet, hat nur geringen Einfluss auf die magnetischen Eigenschaften. Biomimetische Experimente halfen die Rolle von MamP innerhalb der Bakterien zu verstehen und zuletzt wurde ein erster Versuch unternommen, die von den Bakterien erreichte Morphologie-Kontrolle auch in vitro zu ermöglichen. T2 - Bildung und Alterung von Magnetit-Nanopartikeln KW - crystallization of magnetite nanoparticle KW - alteration of magnetite KW - growth kinetics KW - Kristallisation von Magnetit-Nanopartikeln KW - Wachstumskinetik KW - magnetische Eigenschaften KW - Röntgenbeugung Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-72239 ER - TY - THES A1 - Tinnefeld, Christian T1 - Building a columnar database on shared main memory-based storage BT - database operator placement in a shared main memory-based storage system that supports data access and code execution N2 - In the field of disk-based parallel database management systems exists a great variety of solutions based on a shared-storage or a shared-nothing architecture. In contrast, main memory-based parallel database management systems are dominated solely by the shared-nothing approach as it preserves the in-memory performance advantage by processing data locally on each server. We argue that this unilateral development is going to cease due to the combination of the following three trends: a) Nowadays network technology features remote direct memory access (RDMA) and narrows the performance gap between accessing main memory inside a server and of a remote server to and even below a single order of magnitude. b) Modern storage systems scale gracefully, are elastic, and provide high-availability. c) A modern storage system such as Stanford's RAMCloud even keeps all data resident in main memory. Exploiting these characteristics in the context of a main-memory parallel database management system is desirable. The advent of RDMA-enabled network technology makes the creation of a parallel main memory DBMS based on a shared-storage approach feasible. This thesis describes building a columnar database on shared main memory-based storage. The thesis discusses the resulting architecture (Part I), the implications on query processing (Part II), and presents an evaluation of the resulting solution in terms of performance, high-availability, and elasticity (Part III). In our architecture, we use Stanford's RAMCloud as shared-storage, and the self-designed and developed in-memory AnalyticsDB as relational query processor on top. AnalyticsDB encapsulates data access and operator execution via an interface which allows seamless switching between local and remote main memory, while RAMCloud provides not only storage capacity, but also processing power. Combining both aspects allows pushing-down the execution of database operators into the storage system. We describe how the columnar data processed by AnalyticsDB is mapped to RAMCloud's key-value data model and how the performance advantages of columnar data storage can be preserved. The combination of fast network technology and the possibility to execute database operators in the storage system opens the discussion for site selection. We construct a system model that allows the estimation of operator execution costs in terms of network transfer, data processed in memory, and wall time. This can be used for database operators that work on one relation at a time - such as a scan or materialize operation - to discuss the site selection problem (data pull vs. operator push). Since a database query translates to the execution of several database operators, it is possible that the optimal site selection varies per operator. For the execution of a database operator that works on two (or more) relations at a time, such as a join, the system model is enriched by additional factors such as the chosen algorithm (e.g. Grace- vs. Distributed Block Nested Loop Join vs. Cyclo-Join), the data partitioning of the respective relations, and their overlapping as well as the allowed resource allocation. We present an evaluation on a cluster with 60 nodes where all nodes are connected via RDMA-enabled network equipment. We show that query processing performance is about 2.4x slower if everything is done via the data pull operator execution strategy (i.e. RAMCloud is being used only for data access) and about 27% slower if operator execution is also supported inside RAMCloud (in comparison to operating only on main memory inside a server without any network communication at all). The fast-crash recovery feature of RAMCloud can be leveraged to provide high-availability, e.g. a server crash during query execution only delays the query response for about one second. Our solution is elastic in a way that it can adapt to changing workloads a) within seconds, b) without interruption of the ongoing query processing, and c) without manual intervention. N2 - Diese Arbeit beschreibt die Erstellung einer spalten-orientierten Datenbank auf einem geteilten, Hauptspeicher-basierenden Speichersystem. Motiviert wird diese Arbeit durch drei Faktoren. Erstens ist moderne Netzwerktechnologie mit “Remote Direct Memory Access” (RDMA) ausgestattet. Dies reduziert den Unterschied hinsichtlich Latenz und Durchsatz zwischen dem Speicherzugriff innerhalb eines Rechners und auf einen entfernten Rechner auf eine Größenordnung. Zweitens skalieren moderne Speichersysteme, sind elastisch und hochverfügbar. Drittens hält ein modernes Speichersystem wie Stanford's RAMCloud alle Daten im Hauptspeicher vor. Diese Eigenschaften im Kontext einer spalten-orientierten Datenbank zu nutzen ist erstrebenswert. Die Arbeit ist in drei Teile untergliedert. Der erste Teile beschreibt die Architektur einer spalten-orientierten Datenbank auf einem geteilten, Hauptspeicher-basierenden Speichersystem. Hierbei werden die im Rahmen dieser Arbeit entworfene und entwickelte Datenbank AnalyticsDB sowie Stanford's RAMCloud verwendet. Die Architektur beschreibt wie Datenzugriff und Operatorausführung gekapselt werden um nahtlos zwischen lokalem und entfernten Hauptspeicher wechseln zu können. Weiterhin wird die Ablage der nach einem relationalen Schema formatierten Daten von AnalyticsDB in RAMCloud behandelt, welches mit einem Schlüssel-Wertpaar Datenmodell operiert. Der zweite Teil fokussiert auf die Implikationen bei der Abarbeitung von Datenbankanfragen. Hier steht die Diskussion im Vordergrund wo (entweder in AnalyticsDB oder in RAMCloud) und mit welcher Parametrisierung einzelne Datenbankoperationen ausgeführt werden. Dafür werden passende Kostenmodelle vorgestellt, welche die Abbildung von Datenbankoperationen ermöglichen, die auf einer oder mehreren Relationen arbeiten. Der dritte Teil der Arbeit präsentiert eine Evaluierung auf einem Verbund von 60 Rechnern hinsichtlich der Leistungsfähigkeit, der Hochverfügbarkeit und der Elastizität vom System. T2 - Die Erstellung einer spaltenorientierten Datenbank auf einem verteilten, Hauptspeicher-basierenden Speichersystem KW - computer science KW - database technology KW - main memory computing KW - cloud computing KW - verteilte Datenbanken KW - Hauptspeicher Technologie KW - virtualisierte IT-Infrastruktur Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-72063 ER - TY - THES A1 - Mayer, Michael T1 - Pulsar wind nebulae at high energies BT - a diverse population and exceptional twins BT - eine vielfältige Population und außergewöhnliche Zwillinge N2 - Pulsar wind nebulae (PWNe) are the most abundant TeV gamma-ray emitters in the Milky Way. The radiative emission of these objects is powered by fast-rotating pulsars, which donate parts of their rotational energy into winds of relativistic particles. This thesis presents an in-depth study of the detected population of PWNe at high energies. To outline general trends regarding their evolutionary behaviour, a time-dependent model is introduced and compared to the available data. In particular, this work presents two exceptional PWNe which protrude from the rest of the population, namely the Crab Nebula and N 157B. Both objects are driven by pulsars with extremely high rotational energy loss rates. Accordingly, they are often referred to as energetic twins. Modelling the non-thermal multi-wavelength emission of N157B gives access to specific properties of this object, like the magnetic field inside the nebula. Comparing the derived parameters to those of the Crab Nebula reveals large intrinsic differences between the two PWNe. Possible origins of these differences are discussed in context of the resembling pulsars. Compared to the TeV gamma-ray regime, the number of detected PWNe is much smaller in the MeV-GeV gamma-ray range. In the latter range, the Crab Nebula stands out by the recent detection of gamma-ray flares. In general, the measured flux enhancements on short time scales of days to weeks were not expected in the theoretical understanding of PWNe. In this thesis, the variability of the Crab Nebula is analysed using data from the Fermi Large Area Telescope (Fermi-LAT). For the presented analysis, a new gamma-ray reconstruction method is used, providing a higher sensitivity and a lower energy threshold compared to previous analyses. The derived gamma-ray light curve of the Crab Nebula is investigated for flares and periodicity. The detected flares are analysed regarding their energy spectra, and their variety and commonalities are discussed. In addition, a dedicated analysis of the flare which occurred in March 2013 is performed. The derived short-term variability time scale is roughly 6h, implying a small region inside the Crab Nebula to be responsible for the enigmatic flares. The most promising theories explaining the origins of the flux eruptions and gamma-ray variability are discussed in detail. In the technical part of this work, a new analysis framework is presented. The introduced software, called gammalib/ctools, is currently being developed for the future CTA observa- tory. The analysis framework is extensively tested using data from the H. E. S. S. experiment. To conduct proper data analysis in the likelihood framework of gammalib/ctools, a model describing the distribution of background events in H.E.S.S. data is presented. The software provides the infrastructure to combine data from several instruments in one analysis. To study the gamma-ray emitting PWN population, data from Fermi-LAT and H. E. S. S. are combined in the likelihood framework of gammalib/ctools. In particular, the spectral peak, which usually lies in the overlap energy regime between these two instruments, is determined with the presented analysis framework. The derived measurements are compared to the predictions from the time-dependent model. The combined analysis supports the conclusion of a diverse population of gamma-ray emitting PWNe. N2 - Pulsarwindnebel (PWN) sind im Bereich der TeV Gammastrahlung die am häufigsten vorkommende Quellklasse. Die vorliegende Arbeit präsentiert eine detaillierte Studie der Population von gammastrahlungsemittierenden PWNn. Um ihre Entwicklung zu untersuchen, wird ein zeitabhängiges Modell vorgestellt und mit Messdaten verglichen. Der Fokus dieser Arbeit liegt des Weiteren auf zwei außergewöhnlichen PWNn, die aus der übrigen Population hervorstechen: der Krebsnebel und N 157B. Diese beiden PWN werden von Pulsaren mit ähnlich hohen Rotationsenergieverlustraten gespeist. Daher werden die beiden Pulsare auch oft als “energetische Zwillinge” bezeichnet. Im Rahmen dieser Arbeit wird die Breitbandemission von N 157B modelliert. Dies ermöglicht es, spezielle Eigenschaften dieses PWNs abzuschätzen. Diese sind im Vergleich zum Krebsnebel sehr unterschiedlich, obwohl sich die jeweiligen Energiequellen stark ähneln. Es werden verschiedene Möglichkeiten für die unterschiedliche Erscheinung dieser beiden Quellen diskutiert. Auf Grund kürzlich gemessener MeV Gammastrahlungsausbrüche wird die Einzigartigkeit des Krebsnebels in diesem Energiebereich verdeutlicht. Die auf Zeitskalen von Tagen bis Wochen variierende Helligkeit ist nach dem gegenwärtigen Verständnis von PWNn unerwartet. In dieser Arbeit wird die zeitliche Variabilität des Krebsnebels mit Daten vom Fermi Large Area Telescope (Fermi-LAT) analysiert. Die vorgestellte Datenanalyse basiert auf einer neuen Rekonstruktionsmethode von Gammastrahlen, welche zu einer höheren Empfindlichkeit und einer niedrigeren Energieschwelle führt. Die Lichtkurve des Krebsnebels in Gammastrahlung wird auf Periodizität und Variabilität untersucht. Des Weiteren werden die nachgewiesenen Strahlungsausbrüche hinsichtlich ihrer Energiespektren ausgewertet und miteinander auf Gemeinsamkeiten und Unterschiede verglichen. Zusätzlich wird eine detaillierte Analyse der starken Flusserhöhung vom März 2013 vorgestellt. Die hierbei bestimmte Kurzzeitvariabilität von ca. sechs Stunden lässt vermuten, dass eine sehr kleine Region innerhalb des Krebsnebels für die Strahlungsausbrüche verantwortlich ist. Die vielversprechendsten Theorien zu diesem Phänomen werden vorgestellt und diskutiert. Im technischen Teil dieser Arbeit wird eine neue Analyseumgebung vorgestellt, die derzeit für das zukünftige CTA Observatorium entwickelt wird. Diese Software wird intensiven Analysetests mit Daten des H.E.S.S. Experiments unterzogen. Für die angemessene Durchführung von H.E.S.S. Datenanalysen wird ein Modell vorgestellt, das die Verteilung der Untergrundereignisse in H. E. S. S. Daten beschreibt. Des Weiteren erlaubt die Analyseumgebung die Kombination von Daten mehrerer Instrumente. Diese einzigartige Option wird genutzt, um die beschriebene PWN Population genauer zu studieren. Zu diesem Zweck werden Daten von Fermi-LAT und H. E. S. S. gemeinsam analysiert. Von besonderem Interesse ist hierbei das spektrale Maximum von PWN, welches meist im energetischen Überlappbereich der beiden Instrumente liegt. Die Ergebnisse der gemeinsamen Analyse werden mit dem zeitabhängigen Modell für PWN verglichen. Die daraus gewonnenen Resultate verdeutlichen unter anderem die breite Vielfalt von PWNn. T2 - Pulsarwindnebel bei hohen Energien KW - Crab Nebula KW - N157B KW - gammalib/ctools KW - gamma-ray astronomy KW - data analysis KW - Gammastrahlungsastronomie KW - Fermi-LAT KW - H.E.S.S. KW - Statistische Datenanalyse KW - Krebsnebel KW - N157B KW - Pulsarwindnebel Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-71504 ER -