TY - JOUR A1 - Kamjunke, Norbert A1 - Bohn, Christiane A1 - Grey, John T1 - Utilisation of dissolved organic carbon from different sources by pelagic bacteria in an acidic mining lake N2 - We compared growth rates and efficiencies of pelagic bacteria from an extremely acidic mining lake (pH 2.6, mean depth 4.6m) supplied with different sources of carbon: (1) excreted by phytoplankton, (2) derived from benthic algae, (3) entering the lake via ground water, and (4) leached from leaf litter. Bacteria exhibited high growth rate and efficiency on exudates of pelagic and benthic algae. In contrast, they showed a lower growth rate and efficiency with organic carbon from ground water, and grew at a very high rate but a very low efficiency on leaf leachate. Results from stable isotope analyses indicate a greater importance of benthic exudates and leaf leachate for bacteria in the epilimnion, and a higher impact of ground water sources in the hypolimnion. Given the magnitude of differential source inputs into the lake, we suggest that benthic primary production was the most important carbon source for pelagic bacteria. The benthic-pelagic coupling seems to be more relevant in this shallow acidic lake with low pelagic carbon dioxide concentrations than in neutral lakes Y1 - 2006 UR - http://www.schweizerbart.de/j/archiv-hydrobiologie/ U6 - https://doi.org/10.1127/0003-9136/2006/0165-0355 SN - 0003-9136 ER - TY - JOUR A1 - Kamunke, Norbert A1 - Bohn, Christiane T1 - Utilisation of dissolved organic carbon from different sources by pelagic bacteria in an acidic mining lake Y1 - 2006 ER - TY - JOUR A1 - Eccard, Jana A1 - Dean, W. Richard J. A1 - Wichmann, Matthias A1 - Huttunen, S. M A1 - Eskelinen, Eeva-Liisa A1 - Moloney, Kirk A. A1 - Jeltsch, Florian T1 - Use of large Acacia trees by the cavity dwelling Black-tailed Tree Rat in the southern Kalahari N2 - Recent extensive harvesting of large, often dead Acacia trees in and savanna of southern Africa is cause for concern about the conservation status of the arid savanna and its animal community. We mapped vegetation and nests of the Black-tailed Tree Rat Thallomy's nigricauda to assess the extent to which the rats depend on particular tree species and on the existence of dead, standing trees. The study was conducted in continuous Acacia woodland on the southern and eastern edge of the Kalahari, South Africa. Trees in which there were tree rat nests were compared with trees of similar size and vigour to identify the characteristics of nest sites. Spatial analysis of tree rat distribution was conducted using Ripley's-L function. We found that T nigricauda was able to utilize all available tree species, as long as trees were large and old enough so that cavities were existing inside the stem. The spatial distribution of nest trees did not show clumping at the investigated scale, and we therefore reject the notion of the rats forming colonies when inhabiting continuous woodlands. The selection of a particular tree as a nest site was furthermore depending on the close proximity of the major food plant, Acacia mellifera. This may limit the choice of suitable nest sites. since A. mellifera was less likely to grow within a vegetation patch containing a large trees than in patches without large trees. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/01401963 U6 - https://doi.org/10.1016/j.jaridenv.2005.06.019 SN - 0140-1963 ER - TY - JOUR A1 - VanderVen, Peter F. M. A1 - Ehler, Elisabeth A1 - Vakeel, Padmanabhan A1 - Eulitz, Stefan A1 - Schenk, Jörg A. A1 - Milting, Hendrik A1 - Micheel, Burkhard A1 - Fürst, Dieter Oswald T1 - Unusual splicing events result in distinct Xin isoforms that associate differentially with filamin c and Mena/ VASP N2 - Filamin c is the predominantly expressed filamin isoform in striated muscles. It is localized in myofibrillar Z- discs, where it binds FATZ and myotilin, and in myotendinous junctions and intercalated discs. Here, we identify Xin, the protein encoded by the human gene 'cardiomyopathy associated 1' (CMYA1) as filamin c binding partner at these specialized structures where the ends of myofibrils are attached to the sarcolemma. Xin directly binds the EVH1 domain proteins Mena and VASP. In the adult heart, Xin and Mena/VASP colocalize with filamin c in intercalated discs. In cultured cardiomyocytes, the proteins also localize in the nonstriated part of myofibrils, where sarcomeres are assembled and an extensive reorganization of the actin cytoskeleton occurs. Unusual intraexonic splicing events result in the existence of three Xin isoforms that associate differentially with its ligands. The identification of the complex filamin c-Xin-Mena/VASP provides a first glance on the role of Xin in the molecular mechanisms involved in developmental and adaptive remodeling of the actin cytoskeleton during cardiac morphogenesis and sarcomere assembly. (c) 2006 Elsevier Inc. All rights reserved Y1 - 2006 U6 - https://doi.org/10.1016/j.yexcr.2006.03.015 ER - TY - JOUR A1 - Nagel, Birgit A1 - Warsinke, Axel T1 - Towards separation-free electrochemical affinity sensors by using antibodies, aptamers and molecularly imprinted polymers : a review Y1 - 2006 U6 - https://doi.org/10.1080/00032710600853903 ER - TY - JOUR A1 - Huber, Veronika A1 - Gaedke, Ursula T1 - The role of predation for seasonal variability patterns among phytoplankton and ciliates N2 - Investigating the mechanisms which underlie the biomass fluctuations of populations and communities is important to better understand the processes which buffer community biomass in a variable environment. Based on long- term data of plankton biomass in Lake Constance (Bodensee), this study aims at explaining the different degree of synchrony among populations observed within two freshwater plankton groups, phytoplankton and ciliates. Established measures of temporal variability such as the variance ratio and cross-correlation coefficients were combined with first- order autoregressive models that allow estimating species interactions from time-series data. We found that predation was an important driver of the observed seasonal variability patterns in phytoplankton and ciliates, and that competitive interactions only played a subordinate role. In Lake Constance copepods and cladocerans, two major invertebrate predator groups, focus their grazing pressure at different times of the season. Model results suggested that compensatory dynamics detected in phytoplankton originate from the differential vulnerability of species to either one of these two predator groups. For ciliates model results advocated that synchrony among species occurs because ciliates tend to be vulnerable to both predator groups. Our findings underline the necessity of extending studies of community variability to multiple trophic levels because accounting for predator-prey interactions may often be more important than accounting for competitive interactions at one trophic level Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0030-1299 U6 - https://doi.org/10.1111/j.2006.0030-1299.14753.x SN - 0030-1299 ER - TY - THES A1 - Kopka, Claudia T1 - The nucleoside diphosphate kinases - a small gene family involved in the energyphosphotransfer of arabidopsis thaliana Y1 - 2006 CY - Potsdam ER - TY - GEN A1 - Lou, Ying A1 - Ma, Hui A1 - Lin, Wen-Hui A1 - Chu, Zhao-Quing A1 - Müller-Röber, Bernd A1 - Xu, Zhi-Hong A1 - Xue, Hong-Wei T1 - The highly charged region of plant beta-type phosphatidylinositol 4-kinase is involved in membrane targeting and phospholipid binding N2 - In Arabidopsis thaliana and Oryza sativa, two types of PI 4-kinase (PI4Ks) have been isolated and functionally characterized. The alpha-type PI4Ks (similar to 220 kDa) contain a PH domain, which is lacking in beta-type PI4Ks (similar to 120 kDa). beta-Type PI4Ks, exemplified by Arabidopsis AtPI4K beta and rice OsPI4K2, contain a highly charged repetitive segment designated PPC (Plant PI4K Charged) region, which is an unique domain only found in plant beta-type PI4Ks at present. The PPC region has a length of similar to 300 amino acids and harboring 11 (AtPI4K beta) and 14 (OsPI4K2) repeats, respectively, of a 20-aa motif. Studies employing a modified yeast-based "Sequence of Membrane- Targeting Detection'' system demonstrate that the PPC(OsPI4K2) region, as well as the former 8 and latter 6 repetitive motifs within the PPC region, are able to target fusion proteins to the plasma membrane. Further detection on the transiently expressed GFP fusion proteins in onion epidermal cells showed that the PPC(OsPI4K2) region alone, as well as the region containing repetitive motifs 1-8, was able to direct GFP to the plasma membrane, while the regions containing less repetitive motifs, i.e. 6, 4, 2 or single motif(s) led to predominantly intracellular localization. Agrobacterium-mediated transient expression of PPC-GFP fusion protein further confirms the membrane-targeting capacities of PPC region. In addition, the predominant plasma membrane localization of AtPI4Kb was mediated by the PPC region. Recombinant PPC peptide, expressed in E. coli, strongly binds phosphatidic acid, PI and PI4P, but not phosphatidylcholine, PI5P, or PI(4,5) P-2 in vitro, providing insights into potential mechanisms for regulating sub- cellular localization and lipid binding for the plant beta-type PI4Ks Y1 - 2006 UR - http://www.springerlink.com/content/100330 U6 - https://doi.org/10.1007/s11103-005-5548-x SN - 0167-4412 ER - TY - JOUR A1 - Stalz, Holger A1 - Roth, Udo A1 - Schleuder, Detlev A1 - Macht, Marcus A1 - Haebel, Sophie A1 - Strupat, Kerstin A1 - Peter-Katalinic, Jasna A1 - Hanisch, Franz-Georg T1 - The Geodia cydonium galectin exhibits prototype and chimera-type characteristics and a unique sequence polymorphism within its carbohydrate recognition domain N2 - The ancestral galectin from the sponge Geodia cydonium (GCG) is classified on a structural basis to the prototype subfamily, whereas its carbohydrate-binding specificity is related to that of the mammalian chimera-type galectin-3. This dual coordination reveals GCG as a potential precursor of the later evolved galectin subfamilies, which is reflected in the primary structure of the protein. This study provides evidence that GCG is the LECT1 gene product, while neither a previously described LECT2 gene nor a functional LECT2 gene product was found in the specimen under investigation. The electrophoretically separated protein isomers with apparent molecular masses of 13, 15, and 16 kDa correspond to variants of the LECT1 protein-exhibiting peptide sequence polymorphisms that concern critical positions of the carbohydrate recognition domain (13 kDa: Leu51, Asn55, His130, Gly137; 15 kDa: Ser51, Asn55, Asn130, Gly137; 16 kDa: Ser51, Tyr55, Asn130, Glu137). Four residues, highly conserved in the galectin family, are substituted. None of the residues claimed to be involved in interactions with GalNAc alpha 1-3 moieties at an extended binding subsite of galectin-3 was identified in the corresponding positions of GCG. Apparently, the substitutions do not confer distinct binding characteristics to the GCG variants as evidenced by binding studies with a recombinantly expressed 15-kDa isoform. The natural isoforms as well as the recombinant 15-kDa isoform oligomerize by the formation of non-covalent heteromeric or homomeric complexes. A phosphorylation of the galectin was confirmed neither by mass spectrometry nor by alkaline phosphatase treatment combined with isoelectric focusing Y1 - 2006 UR - http://glycob.oxfordjournals.org/content/16/5/402.full U6 - https://doi.org/10.1093/glycob/cwj086 ER - TY - JOUR A1 - Bleidorn, Christoph A1 - Podsiadlowski, Lars A1 - Bartolomaeus, Thomas T1 - The complete mitochondrial genome of the orbiniid polychaete Orbinia latreillii (Annelida, Orbiniidae) : a novel gene order for Annelida and implications for annelid phylogeny N2 - Relationships of annelid subtaxa are controversially discussed and additional markers are necessarily needed to get further insights into their evolution. Due to their high content of information, mitochondrial genomes have been proven very useful in phylogenetic analyses. Whereas many complete mitochondrial genomes of arthropods are available, lophotrochozoan taxa are only scarcely represented and this is especially true for annelids. Here we present the complete mitochondrial genome of the orbiniid polychaete Orbinia latreillii. The circular genome is 15,558 bp in size and contains the same 37 genes as found in most other metazoans. As in the case for all studied annelids all genes are transcribed from the same strand. Compared with the known data from other annelids at least five gene translocations must be hypothesized for O. latreillii. A comparison of the available data shows that gene translocations within Annelida seem to be less frequent than in molluscs, but more frequent as previously assumed. Phylogenetic analyses of mitochondrial DNA sequence data and amino acid data support an inclusion Of Sipuncula within Annelida and a closer relationship to orbiniids is recovered for this taxon. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03781119 U6 - https://doi.org/10.1016/j.gene.2005.11.018 SN - 0378-1119 ER - TY - JOUR A1 - Wronski, Torsten A1 - Apio, Ann A1 - Plath, Martin T1 - The communicatory significance of localised defecation sites in bushbuck (Tragelaphus scriptus) N2 - Like several other mammals, bushbuck (Tragelaphus scriptus) deposit faeces in specific localised defecation sites (LDS). A previous study has ruled out a function of LDS in the context of parasite avoidance. In this study, we investigated the communicatory significance of LDS. In a free ranging population, we tested whether LDS serve to demarcate home ranges, and/or if LDS are used for communication in a non-territorial context. In both sexes, LDS increased significantly in number towards the periphery of individual home ranges. However, the distribution pattern of LDS, as revealed by a nearest-neighbour mapping technique (nearest distances between LDS), did not support the idea that LDS serve home range/territory-demarcation because LDS did not follow a pattern of minimal nearest-neighbour distances along the margins of home ranges. We found females to urinate more often in LDS than males. Notably, information transfer was most frequent between sending (urinating or defecating) females and receiving/responding males (urination or defecation at places where a female had previously signalled). Our results suggest that LDS mainly serve for inter- sexual communication in bushbuck Y1 - 2006 UR - http://www.springerlink.com/content/517tm6115561t421/ U6 - https://doi.org/10.1007/s00265-006-0174-4 ER - TY - JOUR A1 - Lisso, Janina A1 - Altmann, Thomas A1 - Müssig, Carsten T1 - The AtNFXL1 gene encodes a NF-X1 type zinc finger protein required for growth under salt stress JF - FEBS letters : the journal for rapid publication of short reports in molecular biosciences N2 - The human NF-X1 protein and homologous proteins in eukaryotes represent a class of transcription factors which are characterised. by NF-X1 type zinc finger motifs. The Arabidopsis genome encodes two NF-X1 homologs, which we termed AtNFXL1 and AtNFXL2. Growth and survival was impaired in atnfxl1 knock-out mutants and AtNFXL1-antisense plants under salt stress in comparison to wild-type plants. In contrast, 35S: :AtNFXL1 plants showed higher survival rates. The AtNFXL2 protein potentially plays an antagonistic role. The Arabidopsis NF-X1 type zinc finger proteins likely are part of regulatory mechanisms, which protect major processes such as photosynthesis. KW - Arabidopsis thaliana KW - NF-X1 KW - salt stress Y1 - 2006 U6 - https://doi.org/10.1016/j.febslet.2006.07.079 SN - 0014-5793 VL - 580 IS - 22 SP - 4851 EP - 4856 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Bell, Elanor M. A1 - Weithoff, Guntram A1 - Gaedke, Ursula T1 - Temporal dynamics and growth of Actinophrys sol (Sarcodina: Heliozoa), the top predator in an extremely acidic lake N2 - 1. The in situ abundance, biomass and mean cell volume of Actinophrys sol (Sarcodina: Heliozoa), the top predator in an extremely acidic German mining lake (Lake 111; pH 2.65), were determined over three consecutive years (spring to autumn, 2001-03). 2. Actinophrys sol exhibited pronounced temporal and vertical patterns in abundance, biomass and mean cell volume. Increasing from very low spring densities, maxima in abundance and biomass were observed in late June/early July and September. The highest mean abundance recorded during the study was 7 x 10(3) Heliozoa L-1. Heliozoan abundance and biomass were higher in the epilimnion than in the hypolimnion. Actinophrys sol cells from this acidic lake were smaller than individuals of the same species found in other aquatic systems. 3. We determined the growth rate of A. sol using all potential prey items available in, and isolated and cultured from, Lake 111. Prey items included: single-celled and filamentous bacteria of unknown taxonomic affinity, the mixotrophic flagellates Chlamydomonas acidophila and Ochromonas sp., the ciliate Oxytricha sp. and the rotifers Elosa worallii and Cephalodella hoodi. Actinophrys sol fed over a wide-size spectrum from bacteria to metazoans. Positive growth was not supported by all naturally available prey. Actinophrys sol neither increased in cell number (k) nor biomass (k(b)) when starved, with low concentrations of single-celled bacteria or with the alga Ochromonas sp. Positive growth was achieved with single- celled bacteria (k = 0.22 +/- 0.02 d(-1); k(b) = -0.06 +/- 0.02 d(-1)) and filamentous bacteria (k = 0.52 +/- < 0.01 d(- 1); k(b) = 0.66 d(-1)) at concentrations greater than observed in situ, and the alga C. acidophila (up to k = 0.43 +/- 0.03 d(-1); k(b) = 0.44 +/- 0.04 d(-1)), the ciliate Oxytricha sp. (k = 0.34 +/- 0.01 d(-1)) and in mixed cultures containing rotifers and C. acidophila (k = 0.23 +/- 0.02-0.32 +/- 0.02 d(-1); maximum k(b) = 0.42 +/- 0.05 d(-1)). The individual- and biomass-based growth of A. sol was highest when filamentous bacteria were provided. 4. Existing quantitative carbon flux models for the Lake 111 food web can be updated in light of our results. Actinophrys sol are omnivorous predators supported by a mixed diet of filamentous bacteria and C. acidophila in the epilimnion. Heliozoa are important components in the planktonic food webs of 'extreme' environments Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0046-5070 U6 - https://doi.org/10.1111/j.1365-2427.2006.01561.x SN - 0046-5070 ER - TY - JOUR A1 - Gerloff-Elias, Antje A1 - Barua, Deepak A1 - Mölich, Andreas A1 - Spijkerman, Elly T1 - Temperature- and pH-dependent accumulation of heat-shock proteins in the acidophilic green alga Chlamydomonas acidophila N2 - Chlamydomonas acidophila, a unicellular green alga, is a dominant phytoplankton species in acidic water bodies, facing severe environmental conditions such as low pH and high heavy metal concentrations. We examined the pH-, and temperature-dependent accumulation of heat-shock proteins in this alga to determine whether heat-shock proteins play a role in adaptation to their environment. Our results show increased heat-shock proteins accumulation at suboptimal pHs, which were not connected with any change in intracellular pH. In comparison to the mesophilic Chlamydomonas reinhardtii, the acidophilic species exhibited significantly higher accumulations of heat-shock proteins under control conditions, indicating an environmental adaptation of increased basal levels of heat-shock proteins. The results suggest that heat- shock proteins might play a role in the adaptation of C. acidophila, and possibly other acidophilic algae, to their extreme environment Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0168-6496 U6 - https://doi.org/10.1111/j.1574-6941.2006.00078.x SN - 0168-6496 ER - TY - JOUR A1 - Herzschuh, Ulrike A1 - Kürschner, Harald A1 - Mischke, Steffen T1 - Temperature variability and vertical vegetation belt shifts during the last similar to 50,000 yr in the Qilian Mountains (NE margin of the Tibetan Plateau, China) N2 - A 13.94-m-long sediment core, collected from a medium-sized lake in the Qilian Mountains (NE Tibetan Plateau, China), was analysed palynologically at 81 horizons. The interpretation of indicator taxa yielded various vertical shifts of the vegetation belts. These palaeovegetation results have been checked with lake surface pollen spectra from 8 takes representing different altitudinal vegetation belts. Our main findings are the following: A short period of the late Marine Isotope Stage 3 (around similar to 46,000 yr ago) was characterized by interglacial temperature conditions with a tree line above its present-day altitude. During the LGM, the vicinity of the lake was not covered by ice but by sparse alpine vegetation and alpine deserts, indicating that the climate was colder by similar to 4-7 degrees C than today Markedly higher temperatures were inferred from higher arboreal pollen frequencies between similar to 13,000 and similar to 7000 yr ago with a Holocene temperature optimum and a maximal Picea-Betula mixed-forest expansion between similar to 9000 and similar to 7000 yr ago, when temperatures exceeded the present-day conditions by at least 1-2 degrees C. Alpine steppes and meadows and sub-alpine shrub vegetation dominated around the lake since the middle Holocene, suggesting that vegetation and climate conditions were exceptionally stable in comparison to previous periods. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/00335894 U6 - https://doi.org/10.1016/j.yqres.2006.03.001 SN - 0033-5894 ER - TY - JOUR A1 - Köchy, Martin T1 - Stochastic time series of daily precipitation for the interior of Israel N2 - This contribution describes a generator of stochastic time series of daily precipitation for the interior of Israel from c. 90 to 900 mm mean annual precipitation (MAP) as a tool for studies of daily rain variability. The probability of rainfall on a given day of the year is described by a regular Gaussian peak curve function. The amount of rain is drawn randomly from an exponential distribution whose mean is the daily mean rain amount (averaged across years for each day of the year) described by a flattened Gaussian peak curve. Parameters for the curves have been calculated from monthly aggregated, long-term rain records from seven meteorological stations. Parameters for arbitrary points on the MAP gradient are calculated from a regression equation with MAP as the only independent variable. The simple structure of the generator allows it to produce time series with daily rain patterns that are projected under climate change scenarios and simultaneously control MAP. Increasing within-year variability of daily precipitation amounts also increases among-year variability of MAP as predicted by global circulation models. Thus, the time series incorporate important characteristics for climate change research and represent a flexible tool for simulations of daily vegetation or surface hydrology dynamics. Y1 - 2006 UR - 1960 = dx.doi.org/10.1560/IJES_55_2_103 ER - TY - GEN A1 - Köchy, Martin T1 - Stochastic time series of daily precipitation for the interior of Israel N2 - This contribution describes a generator of stochastic time series of daily precipitation for the interior of Israel from c. 90 to 900 mm mean annual precipitation (MAP) as a tool for studies of daily rain variability. The probability of rainfall on a given day of the year is described by a regular Gaussian peak curve function. The amount of rain is drawn randomly from an exponential distribution whose mean is the daily mean rain amount (averaged across years for each day of the year) described by a flattened Gaussian peak curve. Parameters for the curves have been calculated from monthly aggregated, long-term rain records from seven meteorological stations. Parameters for arbitrary points on the MAP gradient are calculated from a regression equation with MAP as the only independent variable. The simple structure of the generator allows it to produce time series with daily rain patterns that are projected under climate change scenarios and simultaneously control MAP. Increasing within-year variability of daily precipitation amounts also increases among-year variability of MAP as predicted by global circulation models. Thus, the time series incorporate important characteristics for climate change research and represent a flexible tool for simulations of daily vegetation or surface hydrology dynamics. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - paper 029 KW - stochastische Zeitreihen KW - täglicher Niederschlag KW - Israel KW - Klimawandel KW - stochastic time series KW - daily precipitation KW - Israel KW - climate change Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-13155 ER - TY - THES A1 - Mungur, Rajsree T1 - Spatio-temporal analysis of florigenic signals in Arabidopsis thaliana, Sinapis alba and Brassica napus T1 - Zeitabhängige Analyse von blühinduzierenden Signalen in Arabidopsis thaliana, Sinapis alba und Brassica napus N2 - Daylength is one of several parameters controlling flowering time in many plant species. The day length is perceived in leaves, but how the floral signal is transduced to the shoot apex via the phloem to induce flowering remains to be elucidated. This study aimed at the identification of new candidates involved in the induction of flowering by employing three plant species, Arabidopsis thaliana, Sinapis alba and Brassica napus in combination with transcript profiling by Affymetrix chip hybridization, metabolite profiling by gas chromatography – mass spectrometry and targeted protein analysis using antibodies. All analyses were performed on tissue-specific samples and focused on phloem sap or phloem exudates. To find common transcript and metabolite candidates potentially associated with the floral transition, two independent induction systems in Arabidopsis were used: a photoextension system, whereby plants received fourteen additional hours of light, and a parallel dexamethasone-inducible system, which was centered on the induction of the known flowering gene CONSTANS (CO). Identification of signals preceding the CO cascade was possible using the light extension regime, while downstream events dependent on CO activation were compared in both systems. Altogether, a number of interesting transcript and metabolite candidates were identified in both systems with some degree of overlap. Sinapis alba was used to investigate the universality of the floral signals between species. Comparisons of metabolite data revealed a few common candidates that may prove interesting for further studies. In addition, a targeted approach was carried out to investigate the presence of the Flowering Locus T (FT) protein during different stages of flower development using an antibody. Interesting changes in the sizes of antigens from rape phloem were seen and appeared consistent in Arabidopsis and to a lesser extent in Sinapis. Overall, the broad surveying approaches for transcripts and metabolites used in this study revealed several new potential candidates involved in the induction and/or regulation of flowering. As far as the protein work, additional experiments will reveal the link between FT and floral induction as well as its role in maintaining the floral state using the abovementioned plant species. N2 - Die Tageslänge ist in vielen Pflanzenarten einer der Parameter, welche die Blütenbildung kontrollieren. Die Tageslänge wird in Blättern gemessen, aber wie das blühinduzierende Signal über das Phloem in den Apex übertragen wird ist bisher nicht aufgeklärt. Die vorliegende Arbeit hatte das Ziel neue Kandidaten zu identifizieren, die an der Blühinduktion beteiligt sind. Dazu wurden die drei Pflanzenarten Arabidopsis thaliana, Sinapis alba und Brassica napus auf der Ebene von Transkripten durch Affymetrix Chip Hybridisierungen, Metaboliten durch Gaschromatographie-Massenspektrometrie und ausgesuchten Proteinen durch Antikörper analysiert. Alle Untersuchungen wurden an gewebespezifischen Proben vorgenommen und waren auf Phloemsaft bzw. Phloemexsudate fokussiert. Um gemeinsame Transkript- und Metabolitkandidaten zu ermitteln, welche mit der Blühinduktion in Zusammenhang stehen, wurden zwei unabhängige Induktionssysteme in Arabidopsis verwendet: Ein Photoextensions-System, in dem die Pflanzen vierzehn zusätzlichen Stunden Licht ausgesetzt wurden und ein paralleles Dexamethason-induzierbares System, das die gezielte Aktivierung des bekannten blühinduzierenden Gens CONSTANS (CO) ermöglicht. Die Identifikation von CO-vorgelagerten Signalen war in dem Photoextensions-System möglich, während der CO-Aktivierung nachgelagerte Ereignisse in beiden Systemen verglichen werden konnten. Zusammengenommen konnten mit beiden Systemen eine Reihe von interessanten Transkript- und Metabolitkandidaten ermittelt werden, welche auch teilweise überlappten. Anschließend wurde Sinapis alba verwendet, um die Universalität der blühinduzierenden Signale in verschiedenen Pflanzenarten zu untersuchen. Vergleiche der Metabolitendaten ergaben ein paar gemeinsame Kandidaten, welche für weitergehende Untersuchungen interessant sein könnten. Zusätzlich wurden mittels Antikörpern gezielte Untersuchungen bezüglich der Präsenz des Flowering Locus T (FT) Proteins während verschiedener Stadien der Blütenentwicklung durchgeführt. Diese Untersuchungen zeigten interessante Änderungen der Größe des Antigens in Raps Phloemsaft, welche auch in Arabidopsis und in geringerem Maße in Sinapis sichtbar waren. Zusammengefasst resultierten die umfassenden Transkript- und Metabolitenmessungen, die in dieser Arbeit verwendet wurden, in einer Reihe von neuen möglichen Kandidaten, welche an der Induktion und/oder Regulation der Blütenbildung beteiligt sein könnten. Bezüglich des Proteins FT sind zusätzliche Experimente notwendig, um seine Rolle bei der Blühinduktion bzw. bei der Aufrechterhaltung des blühenden Zustandes aufzudecken. KW - Florigen KW - Florigen Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-9861 ER - TY - GEN A1 - Neye, Gundula A1 - Wallschläger, Hans-Dieter A1 - Tiedemann, Ralph T1 - Song dialect boundaries in the Yellowhammer: Do they restrict gene flow? T2 - Journal of ornithology Y1 - 2006 SN - 0021-8375 VL - 147 IS - Supplement 1 SP - 219 EP - 219 PB - Blackwell CY - New York ER - TY - JOUR A1 - Heinken, Thilo A1 - Schmidt, Marcus A1 - von Oheimb, Goddert A1 - Kriebitzsch, Wolf-Ulrich A1 - Ellenberg, Hermann T1 - Soil seed banks near rubbing trees indicate dispersal of plant species into forests by wild boar N2 - Current knowledge about processes that generate long-distance dispersal of plants is still limited despite its importance for persistence of populations and colonization of new potential habitats. Today wild Large mammals are presumed to be important vectors for long-distance transport of diaspores within and between European temperate forest patches, and in particular wild boars recently came into focus. Here we use a specific habit of wild boar, i.e. wallowing in mud and subsequent rubbing against trees, to evaluate epizoochorous dispersal of vascular plant diaspores. We present soil seed bank data from 27 rubbing trees versus 27 control trees from seven forest areas in Germany. The mean number of viable seeds and the plant species number were higher in soil samples near rubbing trees compared with control trees. Ten of the 20 most frequent species were more frequent, and many species exclusively appeared in the soil samples near rubbing trees. The large number of plant species and seeds - more than 1000 per tree - in the soils near rubbing trees is difficult to explain unless the majority were dispersed by wild boar. Hooked and bristly diaspores, i.e. those adapted to epizoochory, were more frequent; however, many species with unspecialized diaspores occurred exclusively near rubbing trees. As opposed to plant species closely tied to forests species which occur both in forest and open vegetation and non-forest species were more frequent near rubbing trees compared with controls. These findings are consistent with previous studies on diaspore loads in the coats and hooves of shot wild boars. However, our method allows to identify the transport of diaspores from the open landscape into forest stands, where they might especially emerge after disturbance, and a clustered distribution of epizoochorically dispersed seeds. Moreover, accumulation of seeds of wetness indicators near rubbing trees demonstrates directed dispersal of plant species inhabiting wet places among remote wallows. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/14391791 U6 - https://doi.org/10.1016/j.baae.2005.04.006 SN - 1439-1791 ER - TY - GEN A1 - Heinken, Thilo A1 - Schmidt, Marcus A1 - von Oheimb, Goddert A1 - Kriebitzsch, Wolf-Ulrich A1 - Ellenberg, Hermann T1 - Soil seed banks near rubbing trees indicate dispersal of plant species into forests by wild boar N2 - Current knowledge about processes that generate long-distance dispersal of plants is still limited despite its importance for persistence of populations and colonization of new potential habitats. Today wild large mammals are presumed to be important vectors for long-distance transport of diaspores within and between European temperate forest patches, and in particular wild boars recently came into focus. Here we use a specific habit of wild boar, i.e. wallowing in mud and subsequent rubbing against trees, to evaluate epizoic dispersal of vascular plant diaspores. We present soil seed bank data from 27 rubbing trees versus 27 control trees from seven forest areas in Germany. The mean number of viable seeds and the plant species number were higher in soil samples near rubbing trees compared with control trees. Ten of the 20 most frequent species were more frequent, and many species exclusively appeared in the soil samples near rubbing trees. The large number of plant species and seeds – approximated > 1000 per tree – in the soils near rubbing trees is difficult to explain unless the majority were dispersed by wild boar. Hooked and bristly diaspores, i.e. those adapted to epizoochory, were more frequent, above that many species with unspecialised diaspores occurred exclusively near rubbing trees. Different to plant species closely tied to forest species which occur both in forest and open vegetation, and non-forest species were more frequent near rubbing trees compared with controls. These findings are consistent with previous studies on diaspore loads in the coats and hooves of shot wild boars. However, our method allows to identify the transport of diaspores from the open landscape into forest stands where they might especially emerge after disturbance, and a clustered distribution of epizoochorically dispersed seeds. Moreover, accumulation of seeds of wetness indicators near rubbing trees demonstrates directed dispersal of plant species inhabiting wet places between remote wallows. N2 - Das aktuelle Wissen über Prozesse, die zur Fernausbreitung von Pflanzen führen, ist trotz ihrer Bedeutung für das Überleben von Populationen und die Besiedlung neuer potenzieller Habitate noch immer sehr begrenzt. Wildlebende Großsäuger sind heutzutage vermutlich wichtige Vektoren für den Ferntransport von Diasporen innerhalb und zwischen den einzelnen Waldflächen in Mitteleuropa, und speziell das Wildschwein (Sus scrofa L.) spielt dabei offenbar eine herausragende Rolle. Wir nutzen hier ein spezifisches Verhalten des Wildschweins – Suhlen im Schlamm und nachfolgendes Scheuern an sogenannten Malbäumen – um die epizoochore Ausbreitung von Gefäßpflanzen-Diasporen einzuschätzen. Dargestellt werden die Ergebnisse von Samenbank-Untersuchungen von 27 Malbäumen im Vergleich zu 27 Kontrollbäumen aus sieben Waldgebieten in Deutschland. Sowohl die mittlere Zahl lebensfähiger Samen als auch die Artenzahl waren höher in Bodenproben neben Malbäumen. Zehn der 20 in der Samenbank verbreitetsten Pflanzenarten hatten hier ihren Schwerpunkt, und viele Arten kamen ausschließlich in den neben Malbäumen gewonnenen Proben vor. Die große Zahl von Pflanzenarten und Samen – zumindest > 1000 pro Baum – im Boden an Malbäumen lässt sich nur durch die Aktivität der Wildschweine erklären. Mit Haken oder Borsten ausgestattete, d.h. an Epizoochorie angepasste Diasporen waren häufiger, aber auch viele Arten mit unspezialisierten Diasporen kamen ausschließlich in der Samenbank bei Malbäumen vor. Anders als weitgehend an Wald gebundene Pflanzenarten waren solche, die sowohl im Wald und im Offenland vorkommen, sowie nicht im Wald vorkommende Arten häufiger neben Malbäumen als neben Kontrollbäumen. Diese Befunde stimmen mit denen früherer Untersuchungen von Diasporenladungen im Fell und in den Hufen geschossener Wildschweine überein. Unsere Methode erlaubt darüber hinaus aber die Identifizierung des Diasporentransports aus dem Offenland in die Waldbestände, wo sie insbesondere nach Störungen keimen dürften, sowie einer ungleichmäßigen Verteilung epizoochor ausgebreiteter Diasporen. Außerdem zeigt die Akkumulation von Samen von Nässezeigern neben den Malbäumen eine gezielte Ausbreitung nasse Standorte bewohnender Pflanzenarten zwischen entfernt gelegenen Suhlen. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - paper 150 KW - Diaspore morphology KW - directed dispersal KW - epizoochory KW - long-distance dispersal KW - Sus scrofa Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-46476 ER - TY - JOUR A1 - Hausen, Harald A1 - Bleidorn, Christoph T1 - Significance of chaetal arrangement for maldanid systematics (Annelida : Maldanidae) JF - Scientia marina : international journal on marine sciences N2 - Maldanids are usually divided into several subfamilies: Euclymeninae, Lumbriclymeninae, Maldaninae, Nicomachinae, Rhodininae, Clymenurinae, Notoproctinae, and Boguinae. The taxonomy of maldanids and the delimination of these taxa are mainly based on head morphology, total number of segments, chaetal structure, shape of the pygidium, and position of the anus. The maldanid ingroup relationships, as well as the monophyly of the proposed subfamilies, have so far not been investigated. Pilgrim (1977) described a shift of the notopodial chaetal rows from a transverse direction in anterior chaetigers to a more longitudinal one in posterior chaetigers in Clymene torquata (Leidy, 1855) and Euclymene oerstedii (Claparede, 1863), both belonging to the Euclymeninae. We investigated several maldanid species to assess the usefulness of this character for maldanid systematics and used 3D-reconstruction techniques to reveal the complete geometry of the chaetal sacs. Our investigation shows that a shift is apparent in Euclymene, Axiothella, Johnstonia (all Euclymeninae) and Clymenura (Clymenurinae), but absent in species like Maldane sarsi (Malmgren, 1865), Metasychis disparidentata (Moore, 1904) (both Maldaninae) and Petaloproctus borealis Ardwisson, 1906 (Nicomachinae). The shift is not typical for sedentary polychaetes and is apomorphic within maldanid polychaetes. It thus argues for a close relationship between Euclymeninae and Clymenurinae. The investigation of further maldanid species of different subfamilies may shed additional light on maldanid systematics. KW - Annelida KW - Polychaeta KW - Maldanidae KW - systematics KW - chaetae KW - chaetal arrangement Y1 - 2006 SN - 0214-8358 VL - 70 SP - 75 EP - 79 PB - Institut de Ciències del Mar CY - Barcelona ER - TY - JOUR A1 - Lokstein, Heiko A1 - Hedke, Boris A1 - Mustroph, Angelika A1 - Kühn, Christina T1 - Signals, sensing, and plant primary metabolism Y1 - 2006 ER - TY - CHAP A1 - Rossmanith, Eva A1 - Blaum, Niels A1 - Keil, Manfred A1 - Langerwisch, F. A1 - Meyer, Jork A1 - Popp, Alexander A1 - Schmidt, Michael A1 - Schultz, Christoph A1 - Schwager, Monika A1 - Vogel, Melanie A1 - Wasiolka, Bernd A1 - Jeltsch, Florian T1 - Scaling up local population dynamics to regional scales BT - an integrated approach N2 - In semi-arid savannas, unsustainable land use can lead to degradation of entire landscapes, e.g. in the form of shrub encroachment. This leads to habitat loss and is assumed to reduce species diversity. In BIOTA phase 1, we investigated the effects of land use on population dynamics on farm scale. In phase 2 we scale up to consider the whole regional landscape consisting of a diverse mosaic of farms with different historic and present land use intensities. This mosaic creates a heterogeneous, dynamic pattern of structural diversity at a large spatial scale. Understanding how the region-wide dynamic land use pattern affects the abundance of animal and plant species requires the integration of processes on large as well as on small spatial scales. In our multidisciplinary approach, we integrate information from remote sensing, genetic and ecological field studies as well as small scale process models in a dynamic region-wide simulation tool.
Interdisziplinäres Zentrum für Musterdynamik und Angewandte Fernerkundung Workshop vom 9. - 10. Februar 2006. Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-7320 N1 - [Poster] ER - TY - JOUR A1 - Neumann, Meina A1 - Schulte, Marc A1 - Jünemann, Nora A1 - Stöcklein, Walter F. M. A1 - Leimkühler, Silke T1 - Rhodobacter capsulatus XdhC is involved in molybdenum cofactor binding and insertion into xanthine dehydrogenase N2 - Rhodobacter capsulatus xanthine dehydrogenase (XDH) is a cytoplasmic enzyme with an (alpha beta) 2 heterodimeric structure that is highly identical to homodimeric eukaryotic xanthine oxidoreductases. The crystal structure revealed that the molybdenum cofactor (Moco) is deeply buried within the protein. A protein involved in Moco insertion and XDH maturation has been identified, which was designated XdhC. XdhC was shown to be essential for the production of active XDH but is not a subunit of the purified enzyme. Here we describe the purification of XdhC and the detailed characterization of its role for XDH maturation. We could show that XdhC binds Moco in stoichiometric amounts, which subsequently can be inserted into Moco-free apo-XDH. A specific interaction between XdhC and XdhB was identified. We show that XdhC is required for the stabilization of the sulfurated form of Moco present in enzymes of the xanthine oxidase family. Our findings imply that enzyme-specific proteins exist for the biogenesis of molybdoenzymes, coordinating Moco binding and insertion into their respective target proteins. So far, the requirement of such proteins for molybdoenzyme maturation has been described only for prokaryotes Y1 - 2006 UR - http://www.jbc.org/ U6 - https://doi.org/10.1074/jbc.M601617200 ER - TY - JOUR A1 - Poschadel, Jens R. A1 - Meyer-Lucht, Yvonne A1 - Plath, Martin T1 - Response to chemical cues from conspecifics reflects male mating preference for large females and avoidance of large competitors in the European pond turtle, Emys orbicularis N2 - We examined chemical communication in male and female European pond turtles (Emys orbicularis). In simultaneous binary choice tests, a focal animal was given a choice between pheromones from a conspecific and a choice chamber containing untreated water. Females did not show a preference, both when male and when female stimuli were presented. On the contrary, males preferred the odor of a female over untreated water, suggesting that males actively search for females. The strength of preference was positively correlated with the body size difference between the female and the focal male, indicating that males prefer to mate with larger females. Female fecundity is positively correlated with female size in E. orbicularis, which may account for male choosiness. No overall preference for the stimulus animal was observed when males were presented cues from another male. However, the strength of preference was negatively correlated with the difference in body size. Males avoided large males, but oriented towards smaller stimulus males. This reflects that males form dominance hierarchies, where large males aggressively attack smaller ones. Far-range chemical communication probably enables males to minimize the risk of costly aggressive interactions. This is, to our knowledge, the first study on the role of chemical cues for inter-and intrasexual communication in the European pond turtle Y1 - 2006 UR - http://www.bibliothek.uni-regensburg.de/ezeit/?2007939 U6 - https://doi.org/10.1163/156853906776759510 SN - 0005-7959 ER - TY - JOUR A1 - Gessner, Jörn A1 - Arndt, Gerd-Michael A1 - Tiedemann, Ralph A1 - Bartel, Ryszard A1 - Kirschbaum, Frank T1 - Remediation measures for the Baltic sturgeon: status review and perspectives JF - Journal of applied ichthyology N2 - More than one century ago, sturgeons were prevalent species in the fish communities of all major German rivers both in the North and the Baltic seas drainages. Since then, the populations declined rapidly due to river damming, overfishing and pollution. The last sturgeon catches in the Baltic drainage system occurred during the late 1960ies. Only a few individual captures have been reported during the last 30 years with the most recent records in the Lake Ladoga ( Russia), where the last confirmed catch was recorded in 1984, and a single individual caught off Estonia in 1996. Today, sturgeons are considered missing or extinct in German waters. First attempts for remediation of the species were undertaken in the mid 1990ies. Subsequently, phylogenetic and population genetic analyses of the species were carried out using mtDNA, microsatellites, and nuclear markers ( SNPs). These genetic analyses using recent and historic material have proven the existence of two different species in the Baltic Sea in what was previously considered to represent the European Atlantic sturgeon only. In the Baltic Sea, the American Atlantic sturgeon ( A. oxyrinchus) succeeded to colonize this brackish water system during the Middle Ages. In the North Sea, the European Atlantic sturgeon ( A. sturio) is considered to be the endemic species. These results led to the separation of the remediation activities in the North Sea and the Baltic Sea tributaries. Further studies on the mechanism that lead to the extinction of A. sturio in Germany and the subsequent succession of the A. oxyrinchus mtDNA haplotype are currently been carried out. Broodstock development using the northernmost populations of A. oxyrinchus is currently under way. As a further prerequisite to re-introduce this species into the Baltic, the evaluation of the status of critical habitats for the early life stages of the American Atlantic sturgeon in the River Odra has been performed in collaboration with the Institute for Inland Fisheries of Poland. Alternative fisheries techniques, based on the data of by-catch of exotic sturgeons in the fishery, are presently developed in close cooperation with the fishery to reduce fisheries related mortality in juvenile sturgeons upon release. Monitoring of habitat utilization and migration characteristics of juvenile fish upon experimental release will have to be carried out shortly, using acoustic telemetry, with the aim to follow the fate of the released fish and to determine the best time-size-release-window for future release programmes. Y1 - 2007 U6 - https://doi.org/10.1111/j.1439-0426.2007.00925.x SN - 0175-8659 VL - 22 IS - S1 SP - 23 EP - 31 PB - Wiley-Blackwell CY - Oxford ER - TY - JOUR A1 - Stepan, H A1 - Faber, R A1 - Wessel, Niels A1 - Wallukat, Gerd A1 - Schultheiss, H. P. A1 - Walther, T T1 - Relation between circulating angiotensin II type 1 receptor agonistic autoantibodies and soluble fms-like tyrosine kinase 1 in the pathogenesis of preeclampsia N2 - Context: Placental and circulatory soluble fms-like tyrosine kinase 1 (sFlt1) has proven to be elevated in pregnant women with preeclampsia, a disease characterized by hypertension, proteinuria, and endothelial dysfunction. Recent studies also demonstrated an autoantibody against the angiotensin II type 1 (AT1) receptor (AT1-AA) in that disease. Objective: Both factors are discussed as key players in the etiology of preeclampsia. However, it has not yet been clarified whether these two circulating factors correlate and whether synergy determines the severity of pathology. Design: AT1-AA was retrospectively determined by a bioassay and sFlt1 by an ELISA. Patients: Serum from second-trimester pregnancies with normal or abnormal uterine perfusion and in women at term with or without pregnancy pathology was analyzed. Results: Most of the preeclamptic patients were characterized by high sFlt1 levels and the presence of AT1-AA, although the agonistic effects of the antibody did not correlate with the sFlt1 concentrations (P = 0.85). Although AT1- AA was also detected in second-trimester pregnancies evidencing abnormal uterine perfusion without later pathology, sFlt1 was not significantly elevated in these pregnancies, compared with those with normal uterine perfusion. However, whereas women with abnormal perfusion and later pregnancy pathology did not differ in AT1-AA, compared with those with normal outcome, sFlt1 was significantly increased. Again, the two factors did not correlate (P = 0.15). Conclusions: We conclude that AT1-AA bioactivity and sFlt1 concentrations do not correlate, are not mutually dependent, and are thus probably involved in distinct pathogenetic mechanisms. Both factors in combination may not be causative for the early impaired trophoblast invasion and pathological uterine perfusion Y1 - 2006 UR - http://jcem.endojournals.org/content/91/6/2424.full U6 - https://doi.org/10.1210/Jc.2005-2698 ER - TY - JOUR A1 - Riesch, Rüdiger A1 - Schlupp, Ingo A1 - Tobler, Michael A1 - Plath, Martin T1 - Reduction of the association preference for conspecifics in cave-dwelling Atlantic mollies, Poecilia mexicana JF - Behavioral ecology and sociobiology N2 - Cave animals are widely recognised as model organisms to study regressive evolutionary processes like the reduction of eyes. In this paper, we report on the regressive evolution of species discrimination in the cave molly, Poecilia mexicana, which, unlike other cave fishes, still has functional eyes. This allowed us to examine the response to both visual and non-visual cues involved in species discrimination. When surface-dwelling females were given a chance to associate with either a conspecific or a swordtail (Xiphophorus hellerii) female, they strongly preferred the conspecific female both when multiple cues and when solely visual cues were available to the female. No association preference was observed when only non-visual cues were provided. In contrast, cave-dwelling females showed no preference under all testing conditions, suggesting that species recognition mechanisms have been reduced. We discuss the role of species discrimination in relation to habitat differences. KW - cave fish KW - Poeciliidae KW - Xiphophorus KW - shoaling KW - species recognition Y1 - 2006 U6 - https://doi.org/10.1007/s00265-006-0223-z SN - 0340-5443 VL - 60 SP - 794 EP - 802 PB - Springer CY - New York ER - TY - JOUR A1 - Kreft, Oliver A1 - Georgieva, Radostina A1 - Bäumler, Hans A1 - Steup, Martin A1 - Müller-Röber, Bernd A1 - Sukhorukov, Gleb B. A1 - Möhwald, Helmuth T1 - Red blood cell templated polyelectrolyte capsules : a novel vehicle for the stable encapsulation of DNA and proteins N2 - A novel method for the encapsulation of biomacromolecules, such as nucleic acids and proteins, into polyelectrolyte microcapsules is described. Fluorescence-labelled double-stranded DNA and human serum albumin (HSA) are used as model substances for encapsulation in hollow microcapsules templated on human erythrocytes. The encapsulation procedure involves an intermediate drying C, step. The accumulation of DNA and HSA in the capsules is observed by confocal laser scanning microscopy, UV spectroscopy, and flourimetry. The mechanism of encapsulation is discussed Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/10003270 U6 - https://doi.org/10.1002/marc.200500777 SN - 1022-1336 ER - TY - THES A1 - Schauer, Nicolas T1 - Quantitative trait loci (QTL) for metabolite accumulation and metabolic regulation : metabolite profiling of interspecific crosses of tomato T1 - Metabolomische Analyse von interspezifischen Tomaten N2 - The advent of large-scale and high-throughput technologies has recently caused a shift in focus in contemporary biology from decades of reductionism towards a more systemic view. Alongside the availability of genome sequences the exploration of organisms utilizing such approach should give rise to a more comprehensive understanding of complex systems. Domestication and intensive breeding of crop plants has led to a parallel narrowing of their genetic basis. The potential to improve crops by conventional breeding using elite cultivars is therefore rather limited and molecular technologies, such as marker assisted selection (MAS) are currently being exploited to re-introduce allelic variance from wild species. Molecular breeding strategies have mostly focused on the introduction of yield or resistance related traits to date. However given that medical research has highlighted the importance of crop compositional quality in the human diet this research field is rapidly becoming more important. Chemical composition of biological tissues can be efficiently assessed by metabolite profiling techniques, which allow the multivariate detection of metabolites of a given biological sample. Here, a GC/MS metabolite profiling approach has been applied to investigate natural variation of tomatoes with respect to the chemical composition of their fruits. The establishment of a mass spectral and retention index (MSRI) library was a prerequisite for this work in order to establish a framework for the identification of metabolites from a complex mixture. As mass spectral and retention index information is highly important for the metabolomics community this library was made publicly available. Metabolite profiling of tomato wild species revealed large differences in the chemical composition, especially of amino and organic acids, as well as on the sugar composition and secondary metabolites. Intriguingly, the analysis of a set of S. pennellii introgression lines (IL) identified 889 quantitative trait loci of compositional quality and 326 yield-associated traits. These traits are characterized by increases/decreases not only of single metabolites but also of entire metabolic pathways, thus highlighting the potential of this approach in uncovering novel aspects of metabolic regulation. Finally the biosynthetic pathway of the phenylalanine-derived fruit volatiles phenylethanol and phenylacetaldehyde was elucidated via a combination of metabolic profiling of natural variation, stable isotope tracer experiments and reverse genetic experimentation. N2 - Die Einführung von Hochdurchsatzmethoden zur Analyse von biologischen Systemen, sowie die umfangreiche Sequenzierung von Genomen haben zu einer Verlagerung der Forschung „im Detail“ zu einer ganzheitlicheren Betrachtungsweise auf Systemebene geführt. Aus einer jahrhundertlangen, intensiven Züchtung und Selektion von Nutzpflanzen resultierte gleichzeitig eine Abnahme der genetischen Varianz. Daraus resultierend sind Nutzpflanzen anfälliger gegenüber Stressfaktoren, wie Pathogenen, hohen Salzkonzentrationen oder Trockenheit, als ihre Wildarten. Das Potential konventioneller Züchtung scheint somit heute an seine Grenzen gekommen zu sein. Daher versucht man mittels moderner Molekulartechnik, wie zum Beispiel Marker-gestützte Selektion, Gene oder ganze Genombereiche von Wildarten mit hoher genetischer Variation in Nutzpflanzen einzukreuzen, vornehmlich mit dem Ziel einer Ertrags- bzw. Resistenzsteigerung. Neueste medizinische Studien belegen, dass die Ernährung eine wesentliche Rolle für die menschliche Gesundheit spielt. Besonders wichtig sind hierbei die gesundheitsfördernden Substanzen in pflanzlichen Nahrungsmitteln. Aus diesem Grund kommt der Erforschung der biochemischen Zusammensetzung von biologischen Proben eine immer größere Bedeutung zu. Diese Untersuchung kann elegant durch Metabolitenprofile, welche die multivariate Analyse komplexer biologischer Proben erlauben, durchgeführt werden. In dieser Arbeit wurde zur Untersuchung der biochemischen Zusammensetzung von Tomatenwildarten und interspezifischen S. pennellii Tomatenintrogressionslinien (IL) eine GC/MS basierte Metabolitenanalyseplattform verwendet. Hierzu war es zunächst notwendig eine Massenspektrenbibliothek, zur Annotierung von Massenspektren und Retentionsindices von, in pflanzlichen Proben vorkommenden, Metaboliten anzulegen. Die Analyse der Tomatenwildarten ergab große Unterschiede gegenüber der Kulturtomate im Hinblick auf den Gehalt an Amino- und organischen Säuren, sowie der Zuckerzusammensetzung und den Gehalt an Sekundärmetaboliten. Die darauf folgende Analyse der ILs, von den jede ein genau definiertes genomisches Segment von S. pennellii beinhaltet, bestätigte diese enorme Variation mit 889 metabolischen und 326 ertragsassozierten-Veränderungen in den ILs. Die metabolischen Veränderungen zeichneten sich durch abnehmende bzw. steigende Gehalte von einzelnen Metaboliten, aber auch durch eine koordinierte Änderung aus. In dieser Arbeit wurde weiterhin der Biosyntheseweg der Volatilenstoffe Phenylethanol und Phenylacetaldehyd mit Hilfe einer IL untersucht. Hierbei konnten durch stabile Isotopenmarkierung und eines „reverse genetics“-Ansatzes Gene bzw. Enzyme identifiziert werden, die für die Dekarboxylierung des Eduktes Phenylalanin verantwortlich sind. Diese Arbeit beschreibt erstmals die umfassende Analyse von biochemischen Komponenten auf Genombasis in Tomatenintrogressionslinien und zeigt damit ein Werkzeug auf zur Identifizierung von qualitativen biochemischen Merkmalen in der modernen molekularen Züchtung. KW - Tomate KW - Metabolit KW - GC-MS KW - Introgression KW - Frucht KW - Metabolome KW - Züchtung KW - metabolic genomics KW - Tomato KW - metabolite profiling KW - metabolome KW - breeding KW - crops KW - fruit KW - metabolite breeding KW - metabolic genomics Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-7643 ER - TY - JOUR A1 - Stobiecki, Maciej A1 - Skirycz, Aleksandra A1 - Kerhoas, L. A1 - Kachlicki, P. A1 - Muth, D. A1 - Einhorn, J. A1 - Mueller-Roeber, Bernd T1 - Profiling of phenolic glycosidic conjugates in leaves of Arabidopsis thaliana using LC/MS JF - Metabolomics : the official journal of the Metabolomics Society N2 - Profiling of plant secondary metabolites is still a very difficult task. Liquid chromatography (LC) or capillary electrophoresis hyphenated with different kinds of detectors are methods of choice for analysis of polar, thermo labile compounds with high molecular masses. We demonstrate the applicability of LC combined with UV diode array or/and mass spectrometric detectors for the unambiguous identification and quantification of flavonoid conjugates isolated from Arahidopsis thaliana leaves of different genotypes and grown in different environmental conditions. During LC/UV/MS/MS analyses we were able to identify tetra-, tri, and di-glycosides of kaempferol, quercetin and isorhamnetin. Based on our results we can conclude that due to the co-elution of different chemical compounds in reversed phase H PLC systems the application of UV detectors does not allow to precisely profile all flavonoid conjugates existing in A. thaliana genotypes. Using MS detection it was possible to unambiguously recognize the glycosylation patterns of the aglycones. However, from the mass spectra we could not conclude neither the anomeric form of the C-1 carbon atoms of sugar moieties in glycosidic bonds between sugars or sugar and aglycone nor the position of the second carbon involved in disaccharides. The applicability of collision induced dissociation techniques (CID MS/MS) for structural analyses of the studied group of plant secondary metabolites with two types of analyzers (triple quadrupole or ion trap) was demonstrated. KW - liquid chromatography-mass spectrometry KW - metabolite profiling KW - metabolomics KW - flavonoid glycosides Y1 - 2006 U6 - https://doi.org/10.1007/s11306-006-0031-5 SN - 1573-3882 VL - 2 SP - 197 EP - 219 PB - Springer CY - New York ER - TY - JOUR A1 - Wichmann, Matthias A1 - Dean, W. R. J. A1 - Jeltsch, Florian T1 - Predicting the breeding success of large raptors in arid southern Africa : a first assessment N2 - Raptors are often priorities for conservation efforts and breeding success is a target measure for assessing their conservation status. The breeding success of large raptors in and southern Africa is thought to be higher in years of high rainfall. While this correlation has been found in several studies, it has not yet been shown for data from a wider geographical area. In conservation research, it is important to explore the differences between spatially- separated populations to estimate and to compare their conservation status, and to deduce specific management strategies. Using a theoretical approach, we develop a simplistic model to explain the breeding success-rainfall relationship in large African raptors at larger spatial scales. Secondly, we validate this model and we show that the inclusion of field data leads to consistent predictions. In particular, we recommend that the average size of the 'effective territory' should be included in the relationship between annual rainfall and breeding success of raptors in and southern Africa. Accordingly, we suggest that breeding success is a function of precipitation and inter- nest distance. We present a new measure of territory quality depending on rainfall and territory size. We suggest that our model provides a useful first approach to assess breeding success in large raptors of and southern Africa. However, we strongly emphasise the need to gather more data to further verify our model. A general problem in conservation research is to compare the status of populations assessed in different study areas under changing environmental conditions. Our simplistic approach indicates that this problem can be overcome by using a weighted evaluation of a target measure (i.e. breeding success), taking regional differences into account Y1 - 2006 ER - TY - JOUR A1 - Schmidtke, Andrea A1 - Bell, Elanor M. A1 - Weithoff, Guntram T1 - Potential grazing impact of the mixotrophic flagellate Ochromonas sp. (Chrysophyceae) on bacteria in an extremely acidic lake N2 - Flagellates are important bacterial grazers in most planktonic food webs. The prey-size preference of the mixotrophic flagellate, Ochromonas sp. (Chrysophyceae), isolated from an extremely acidic lake, Lake 111 (pH 2.6), was determined using fluorescently labelled microspheres (beads). According to grazing experiments with cultured bacteria, also isolated from Lake 111, the potential grazing impact on Lake 111"s single-celled bacterial production was calculated. Ochromonas sp. ingested the smallest beads offered (0.5 µm diameter) at the highest rate. Ingestion rate declined with increasing bead size. The highest prey volume-specific ingestion was measured for Ochromonas sp. feeding on intermediate-sized beads (1.9 µm). Ingestion rates were low due in part to the large fraction of inactive flagellates observed. According to the bacterial ingestion rate, a mean of 88% (epilimnion) and 68% (hypolimnion) of in situ single- celled bacterial production is potentially grazed daily by Ochromonas sp. In the epilimnion of Lake 111, the heterotrophic carbon gain is three times higher than the autotrophic production. Alongside carbon uptake, Ochromonas sp. also benefits from ingesting bacteria through the uptake of phosphorus. A biovolume minimum corresponding to the prey size at which Ochromonas sp. feeds most efficiently occurred in the Lake 111 epilimnetic bacterial community, implying top-down control of the bacterial community by Ochromonas sp. Y1 - 2006 UR - http://plankt.oxfordjournals.org/content/28/11/991.full U6 - https://doi.org/10.1093/plankt/fbl034 SN - 0142-7873 SN - 1464-3774 VL - 28 IS - 11 SP - 991 EP - 1001 PB - Oxford University Press CY - Oxford ER - TY - JOUR A1 - Sato, A A1 - Gambale, Franco A1 - Dreyer, Ingo A1 - Uozumi, N T1 - Posttranslational inodification affects K+ current of plant K+ channel Y1 - 2006 ER - TY - JOUR A1 - Hobbhahn, Nina A1 - Küchmeister, Heike A1 - Porembski, Stefan T1 - Pollination biology of mass flowering terrestrial Utricularia species (Lentibulariaceae) in the Indian Western Ghats JF - Plant biology N2 - The pollination biology of three mass flowering Utricularia species of the Indian Western Ghats, U. albocaerulea, U. purpurascens, and U. reticulata, was studied for the first time by extensive observation of flower visitors, pollination experiments, and nectar analyses. The ephemerality of the Utricularia habitats on lateritic plateaus, weather conditions adverse to insects, lack of observations of flower visitors to other Utricularia spp., and the predominance of at least. facultative autogamy in the few Utricularia species studied so far suggested that an autogamous breeding system is the common case in the genus. In contrast, we showed that the studied populations are incapable of autonomous selfing, or that it is an event of negligible rarity, although P/O was similarily low as in autogamous species investigated by other authors. In all three species the spatial arrangement of the reproductive organs makes an insect vector necessary for pollen transfer between and within flowers. However, U. purpurascens and U. reticulata are highly self-compatible, which allows for visitor-mediated auto-selfing and geitonogamy on inflorescence and clone level. Floral nectar is present in extremely small volumes in all three species, but sugar concentrations are high. More than 50 species of bees, butterflies, moths, hawk moths, and clipterans were observed to visit the flowers, and flower morphology facilitated pollination by all observed visitors. The results are discussed in the context of the phenological characteristics of the studied species, especially the phenomenon of mass flowering, and the environmental conditions of their habitats. KW - Lentibulariaceae KW - Utricularia KW - mass flowering KW - carnivory KW - India KW - Western Ghats KW - pollination Y1 - 2008 U6 - https://doi.org/10.1055/s-2006-924566 SN - 1435-8603 VL - 8 IS - 6 SP - 791 EP - 804 PB - Wiley-Blackwell CY - Oxford ER - TY - JOUR A1 - Dauvillee, David A1 - Chochois, Vincent A1 - Steup, Martin A1 - Haebel, Sophie A1 - Eckermann, Nora A1 - Ritte, Gerhard A1 - Ral, Jean-Philippe A1 - Colleoni, Christophe A1 - Hicks, Glenn A1 - Wattebled, Fabrice A1 - Deschamps, Philippe A1 - Lienard, Luc A1 - Cournac, Laurent A1 - Putaux, Jean-Luc A1 - Dupeyre, Danielle A1 - Ball, Steven G. T1 - Plastidial phosphorylase is required for normal starch synthesis in Chlamydomonas reinhardtii JF - The plant journal N2 - Among the three distinct starch phosphorylase activities detected in Chlamydomonas reinhardtii, two distinct plastidial enzymes (PhoA and PhoB) are documented while a single extraplastidial form (PhoC) displays a higher affinity for glycogen as in vascular plants. The two plastidial phosphorylases are shown to function as homodimers containing two 91-kDa (PhoA) subunits and two 110-kDa (PhoB) subunits. Both lack the typical 80-amino-acid insertion found in the higher plant plastidial forms. PhoB is exquisitely sensitive to inhibition by ADP-glucose and has a low affinity for malto-oligosaccharides. PhoA is more similar to the higher plant plastidial phosphorylases: it is moderately sensitive to ADP-glucose inhibition and has a high affinity for unbranched malto-oligosaccharides. Molecular analysis establishes that STA4 encodes PhoB. Chlamydomonas reinhardtii strains carrying mutations at the STA4 locus display a significant decrease in amounts of starch during storage that correlates with the accumulation of abnormally shaped granules containing a modified amylopectin structure and a high amylose content. The wild-type phenotype could be rescued by reintroduction of the cloned wild-type genomic DNA, thereby demonstrating the involvement of phosphorylase in storage starch synthesis. KW - Chlamydomonas KW - starch KW - amylopectin KW - (glycogen) starch phosphorylase Y1 - 2006 U6 - https://doi.org/10.1111/j.1365-313X.2006.02870.x SN - 0960-7412 VL - 48 IS - 2 SP - 274 EP - 285 PB - Blackwell CY - Oxford ER - TY - JOUR A1 - Krikunova, Maria A1 - Lokstein, Heiko A1 - Leupold, Dieter A1 - Hiller, Roger G. A1 - Voigt, B. T1 - Pigment-pigment interactions in PCP of Amphidinium carterae investigated by nonlinear polarization spectroscopy in the frequency domain N2 - Peridinin-chlorophyll a-protein (PCP) is a unique antenna complex in dinoflagellates that employs peridinin (a carotenoid) as its main light-harvesting pigment. Strong excitonic interactions between peridinins, as well as between peridinins and chlorophylls (Chls) a, can be expected from the short intermolecular distances revealed by the crystal structure. Different experimental approaches of nonlinear polarization spectroscopy in the frequency domain (NLPF) were used to investigate the various interactions between pigments in PCP of Amphidinium carterae at room temperature. Lineshapes of NLPF spectra indicate strong excitonic interactions between the peridinin's optically allowed S-2 (1Bu(+)) states. A comprehensive subband analysis of the distinct NLPF spectral substructure in the peridinin region allows us to assign peridinin subbands to the two Chls a in PCP having different S-1-state lifetimes. Peridinin subbands at 487, 501, and 535 nm were assigned to the longer-lived Chl, whereas a peridinin subband peaking at 515 nm was detected in both clusters. Certain peridinin(s), obviously corresponding to the subband centered at 487 nm, show(s) specific (possibly Coulombic?) interaction between the optically dark S-1(2A(g)(-)) and/or intramolecular charge- transfer (ICT) state and S-1 of Chl a. The NLPF spectrum, hence, indicates that this peridinin state is approximately isoenergetic or slightly above S-1 of Chl a. A global subband analysis of absorption and NLPF spectra reveals that the Chl a Q(y)-band consists of two subbands ( peaking at 669 and 675 nm and having different lifetimes), confirmed by NLPF spectra recorded at high pump intensities. At the highest applied pump intensities an additional band centered at <= 660 nm appears, suggesting-together with the above results-an assignment to a low-dipole moment S-0-> S-1/ICT transition of peridinin Y1 - 2006 ER - TY - JOUR A1 - Baumann, Otto A1 - Lutz, Kathleen T1 - Photoreceptor morphogenesis in the Drosophila compound eye : R1-R6 rhabdomeres become twisted just before eclosion N2 - The photosensitive microvilli of Drosophila photoreceptors R1-R6 are not aligned in parallel over the entire length of the visual cells. In the distal half of each cell, the microvilli are slightly tilted toward one side and, in the proximal half, extremely toward the opposite side. This phenomenon, termed rhabdomere twisting, has been known for several decades, but the developmental and cell biological basis of rhabdomere twisting has not been studied so far. We show that rhabdomere twisting is also manifested as molecular polarization of the visual cell, because phosphotyrosine- containing proteins are selectively partitioned to different sides of the rhabdomere stalk in the distal. and proximal sections of each R1-R6 photoreceptor. Both the asymmetrical segregation of phosphotyrosine proteins and the tilting of the microvilli occur shortly before eclosion of the flies, when eye development in all other aspects is considered to be essentially complete. Establishment of rhabdomere twisting occurs in a light-independent manner, because phosphotyrosine staining is unchanged in dark-reared wild-type flies and in mutants with defects in the phototransduction cascade, ninaE(17) and norpA(P24). We conclude that antiphosphotyrosine immunofluorescence can be used as a light microscopic probe for the analysis of rhabdomere twisting and that microvilli tilting represents a type of planar cell polarity that is established by an active process in the last phase of photoreceptor morphogenesis, just prior to eclosion of the flies. Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/31248 U6 - https://doi.org/10.1002/Cne.21030 SN - 0021-9967 ER - TY - GEN A1 - Köchy, Martin T1 - Photodegradation of grass litter in semi-arid grasslands : a global perspective N2 - In a recent contribution in Nature (vol. 442, pp. 555-558) Austin & Vivanco showed that sunlight is the dominant factor for decomposition of grass litter in a semi-arid grassland in Argentine. The quantification of this effect was portrayed as a novel finding. I put this result in the context of three other publications from as early as 1980 that quantified photodegradation. My synopsis shows that photodegradation is an important process in semi-arid grasslands in South America, North America and eastern Europe. KW - Laubstreu KW - semi-arides Grasland KW - abiotische Zersetzung KW - UV-Licht KW - Schatten KW - leaf litter KW - semi-arid grassland KW - abiotic decomposition KW - UV radiation KW - shade Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-12006 ER - TY - JOUR A1 - Ritte, Gerhard A1 - Heydenreich, Matthias A1 - Mahlow, Sebastian A1 - Haebel, Sophie A1 - Koetting, Oliver A1 - Steup, Martin T1 - Phosphorylation of C6- and C3-positions of glucosyl residues in starch is catalysed by distinct dikinases JF - FEBS letters : the journal for rapid publication of short reports in molecular biosciences N2 - Glucan, water dikinase (GWD) and phosphoglucan, water dikinase (PWD) are required for normal starch metabolism. We analysed starch phosphorylation in Arabidopsis wildtype plants and mutants lacking either GWD or PWD using P-31 NMR. Phosphorylation at both C6- and C3-positions of glucose moieties in starch was drastically decreased in GWD-deficient mutants. In starch from PWD-deficient plants C3-bound phosphate was reduced to levels close to the detection limit. The latter result contrasts with previous reports according to which GWD phosphorylates both C6- and C3-positions. In these studies, phosphorylation had been analysed by HPLC of acid-hydrolysed glucans. We now show that maltose-6-phosphate, a product of incomplete starch hydrolysis, co-eluted with glucose-3-phosphate under the chromatographic conditions applied. Re-examination of the specificity of the dikinases using an improved method demonstrates that C6- and C3-phosphorylation is selectively catalysed by GWD and PWD, respectively. KW - starch phosphorylation KW - GWD KW - PWD KW - P-31 NMR Y1 - 2006 U6 - https://doi.org/10.1016/j.febslet.2006.07.085 SN - 0014-5793 VL - 580 IS - 20 SP - 4872 EP - 4876 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Andresen, Heiko A1 - Grötzinger, Carsten A1 - Zarse, Kim A1 - Birringer, Marc A1 - Hessenius, Carsten A1 - Kreuzer, Oliver Johannes A1 - Ehrentreich-Förster, Eva A1 - Bier, Frank Fabian T1 - Peptide microarrays with site-specifically immobilized synthetic peptides for antibody diagnostics N2 - Peptide microarrays bear the potential to discover molecular recognition events on protein level, particularly in the field of molecular immunology, in a manner and with an efficiency comparable to the performance of DNA microarrays. We developed a novel peptide microarray platform for the detection of antibodies in liquid samples. The system comprises site-specific solution phase coupling of biotinylated peptides to NeutrAvidin, localized microdispensing of peptide-NeutrAvidin conjugates onto activated glass slides and a fluorescence immuno sandwich assay format for antibody capture and detection. Our work includes synthetic peptides deduced from amino acid sequences of immunodominant linear epitopes, such as the T7 phage capsid protein, Herpes simplex virus glycoprotein D, c-myc protein and three domains of the Human coronavirus 229E polymerase polyprotein. We demonstrate that our method produces peptide arrays with excellent spot morphology which are capable of specific and sensitive detection of monoclonal antibodies from fluid samples. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/09254005 U6 - https://doi.org/10.1016/j.snb.2005.07.033 SN - 0925-4005 ER - TY - JOUR A1 - Greil, Holle T1 - Patterns of sexual dimorphism from birth to senescence JF - Collegium antropologicum N2 - Sexual dimorphism is expressed as median of the female values in percent of the median of the male values, of 4 length measurements, 3 circumferences, and 5 measurements of corpulence respectively fat. Data were obtained from a cross-sectional sample of more than 41.000 German subjects, aged from birth to age 62. The pattern of sexual dimorphism is similar in the length measurements. Girls are shorter at birth, but they increase in length at higher rates than boys and even temporarily overgrow the boys up to age 12. Thereafter, males show an obvious growth advantage leading to some 6 to 9% more length in adult males. In contrast, female circumferences are always smaller, from birth to senescence. Though, the differences between the sexes are low in circumferences, up to age 13, sexual dimorphism increases to 17% in the thoracic circumference at adulthood. Sexual dimorphism in weight and BMI is comparably with that in length measurements while subcutaneous fat and total body fat content are always higher in females. The results highlight that sexual dimorphism develops at different pace in the various components of the body and that it associates with a sex specific growth tempo. KW - sexual dimorphism KW - biological age KW - growth-age KW - adulthood Y1 - 2006 SN - 0350-6134 VL - 30 IS - 3 SP - 637 EP - 641 PB - Institute for Anthropological Research CY - Zagreb ER - TY - JOUR A1 - Apio, Ann A1 - Plath, Martin A1 - Wronski, Torsten T1 - Patterns of gastrointestinal parasitic infections in the bushbuck Tragelaphus scriptus from the Queen Elizabeth National Park, Uganda JF - Journal of helminthology N2 - Seasonal, host sex and age-related variations in helminth egg and coccidian oocyst counts were investigated in a naturally infected wild bushbuck (Tragelaphus scriptus) population in Queen Elizabeth National Park, western Uganda from April 2000 to February 2002. The prevalence and mean intensity quantified as the number of eggs and oocysts per gram of faeces were taken as a measure of parasite burdens. Host sex and age-related differences in prevalence values were not found but the overall prevalence of Eimeria sp. was significantly higher during the rainy season, and peak counts were recorded either during or soon after a peak rainfall. A similar trend was observed for Moniezia spp., although the results were marginally not significant. There were also no significant differences in mean intensity values, relative to host sex, age or season. Y1 - 2006 U6 - https://doi.org/10.1076/JOH2006343 SN - 0022-149X VL - 80 IS - 3 SP - 213 EP - 218 PB - Univ. Press CY - Cambridge ER - TY - JOUR A1 - Krylov, Andrey. V. A1 - Adamzig, H. A1 - Walter, A. D. A1 - Loechel, B. A1 - Kurth, E. A1 - Pulz, O. A1 - Szeponik, Jan A1 - Wegerich, Franziska A1 - Lisdat, Fred T1 - Parallel generation and detection of superoxide and hydrogen peroxide in a fluidic chip JF - Sensors and actuators : B, Chemical N2 - A fluidic chip system was developed, which combines a stable generation of superoxide radicals and hydrogen peroxide with their sensorial detection. The generation of both reactive oxygen species was achieved by immobilization of xanthine oxidase on controlled pore glass in a reaction chamber. Antioxidants can be introduced into the fluidic chip system by means of mixing chamber. The detection of both species is based on the amperometric principle using a biosensor chip with two working electrodes. As sensing protein for both electrodes cytochrome c was used. The novel system was designed for the quantification of the antioxidant efficiency of different potential scavengers of the respective reactive species in an aqueous medium. Several model antioxidants such as ascorbic acid or catalase have been tested under flow conditions. KW - biosensor KW - cytochrome c KW - flow system KW - reactive oxygen species KW - antioxidant Y1 - 2006 U6 - https://doi.org/10.1016/j.snb.2005.11.062 SN - 0925-4005 VL - 119 IS - 1 SP - 118 EP - 126 PB - Elsevier CY - Lausanne ER - TY - JOUR A1 - Herzschuh, Ulrike T1 - Palaeo-moisture evolution in monsoonal Central Asia during the last 50,000 years N2 - The late-Quaternary climate history of monsoonal Central Asia was inferred from 75 palaeoclimatic records which provide information about moisture conditions in the last 50 ka (or part of this period). Wet conditions occurred during middle and late Marine Isotope Stage 3, while the Last Glacial Maximum (LGM) was characterized by dry climate conditions in the region. A stepwise climate amelioration is suggested by the climate records following the LGM. Several climate signals of this period, which were reported from high-latitude ice core records, are preserved in archives from monsoonal Central Asia as well. During the early Holocene, high effective moisture was inferred from most records from the area dominated by the Indian Monsoon (e.g. the Tibetan Plateau) suggesting that Holocene optimal climate conditions occurred there during this period. In contrast, areas which are dominated by the South-East Asian monsoon (SE Monsoon) and the Westerlies (in north-western and north-central China, Mongolia) do not uniformly show an early Holocene climate optimum. For this area optimal conditions prevailed during the mid-Holocene. These apparent contradictions can possibly be explained by the regional uplift and descent of air masses in the Holocene. During the early Holocene, strengthened insolation possibly caused an enhanced low-level convergence over the Tibetan Plateau which led to the intensification of the summer monsoon. The strong air uplift caused intensified precipitation and air divergence in the upper troposphere over the Tibetan Plateau. The areas adjacent to the north therefore experienced an intensified descent of air masses and consequently increased aridity. The majority of the palaeoclimatic records suggest reduced effective moisture since the late Holocene in the region. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/02773791 U6 - https://doi.org/10.1016/j.quascirev.2005.02.006 SN - 0277-3791 ER - TY - JOUR A1 - Knösche, Rüdiger T1 - Organic sediment nutrient concentrations and their relationship with the hydrological connectivity of floodplain waters (River Havel, NE Germany) N2 - Investigations on large canalised rivers, for example the Danube, have shown that transported particulate matter, which is typically inorganic, is predominantly deposited in waters near the river's main channel. This investigation deals with the lower section of the River Havel (NE Germany), a canalised lowland river with a very flat floodplain. This river is highly polluted by nutrients from urban areas (Berlin) and a long chain of river lakes produces high concentrations of phytoplankton. Due to the high proportion of planktogenic detritus, it was hypothesised that greater quantities of nutrient-rich fine particulate organic matter (FPOM) would be deposited in floodplain waters located further from the main channel than has been reported for large rivers.The total nutrient, P-binding metal (Fe, Al, and Mn), organic and inorganic carbon (TOC, TIC) contents of the upper organic sediment layer (0 - 4 cm) were analysed in samples collected from 48 floodplain water and river sites. The sediment bulk density, calculated on the basis of dry mass content and loss on ignition, was used to characterize the waters according to the impact of the river current. The results showed that the variability of total phosphorus (TP) was best explained by the variability of total iron (TFe, R2 = 0.52). The floodplain water sediments could clearly be separated into two groups on the basis of the sediment particle size composition, and of the element ratios TOC:TP, TN:TP, primarily TFe:TP. The sediments from impounded river sections and from mouth sections of backwaters (approx. 100 - 200 m) were characterized by a high proportion particles from the 0.1 - 0.5 mm size fraction and by homogeneous, low TFe:TP, TOC:TP and TN:TP ratios. Sediments from distal sections of backwaters and of oxbow lakes tended to exhibit high element ratios with much higher variability. These results were interpreted as a spatially limited impact of the river on the floodplain water sediments. Contrary to expectation, the phosphorus bound in river seston was predominantly and very homogeneously deposited in the impounded river and mouth sections of backwaters. This implies that the inundation of the floodplain waters during spring floods seems to have no important material impact on the sediments in waters of low hydrologically connectivity with the River Havel. Y1 - 2006 ER - TY - BOOK A1 - Köchy, Martin T1 - Opposite trends in life stages of annual plants caused by daily rainfall variability - interaction with climate change N2 - Global Circulation Models of climate predict not only a change of annual precipitation amounts but also a shift in the daily distribution. To improve the understanding of the importance of daily rain pattern for annual plant communities, which represent a large portion of semi-natural vegetation in the Middle East, I used a detailed, spatially explicit model. The model explicitly considers water storage in the soil and has been parameterized and validated with data collected in field experiments in Israel and data from the literature. I manipulated daily rainfall variability by increasing the mean daily rain intensity on rainy days (MDI, rain volume/day) and decreasing intervals between rainy days while keeping the mean annual amount constant. In factorial combination, I also increased mean annual precipitation (MAP). I considered five climatic regions characterized by 100, 300, 450, 600, and 800 mm MAP. Increasing MDI decreased establishment when MAP was >250 mm but increased establishment at more arid sites. The negative effect of increasing MDI was compensated by increasing mortality with increasing MDI in dry and typical Mediterranean regions (c. 360-720 mm MAP). These effects were strongly tied to water availability in upper and lower soil layers and modified by competition among seedlings and adults. Increasing MAP generally increased water availability, establishment, and density. The order of magnitudes of MDI and MAP effects overlapped partially so that their combined effect is important for projections of climate change effects on annual vegetation. The effect size of MAP and MDI followed a sigmoid curve along the MAP gradient indicating that the semi-arid region (?300 mm MAP) is the most sensitive to precipitation change with regard to annual communities. Y1 - 2006 UR - http://www.martinkoechy.de/research/papers/Koechy2006.pdf ER - TY - GEN A1 - Köchy, Martin T1 - Opposite trends in life stages of annual plants caused by daily rainfall variability BT - interaction with climate change N2 - Global Circulation Models of climate predict not only a change of annual precipitation amounts but also a shift in the daily distribution. To improve the understanding of the importance of daily rain pattern for annual plant communities, which represent a large portion of semi-natural vegetation in the Middle East, I used a detailed, spatially explicit model. The model explicitly considers water storage in the soil and has been parameterized and validated with data collected in field experiments in Israel and data from the literature. I manipulated daily rainfall variability by increasing the mean daily rain intensity on rainy days (MDI, rain volume/day) and decreasing intervals between rainy days while keeping the mean annual amount constant. In factorial combination, I also increased mean annual precipitation (MAP). I considered five climatic regions characterized by 100, 300, 450, 600, and 800 mm MAP. Increasing MDI decreased establishment when MAP was >250 mm but increased establishment at more arid sites. The negative effect of increasing MDI was compensated by increasing mortality with increasing MDI in dry and typical Mediterranean regions (c. 360–720 mm MAP). These effects were strongly tied to water availability in upper and lower soil layers and modified by competition among seedlings and adults. Increasing MAP generally increased water availability, establishment, and density. The order of magnitudes of MDI and MAP effects overlapped partially so that their combined effect is important for projections of climate change effects on annual vegetation. The effect size of MAP and MDI followed a sigmoid curve along the MAP gradient indicating that the semi-arid region (≈300 mm MAP) is the most sensitive to precipitation change with regard to annual communitie KW - Klimaänderung KW - Klimawandel KW - Einjahrespflanzen KW - Schwankung KW - tägliche Regenmenge KW - Israel KW - climate change KW - daily rainfall variability KW - annual plant KW - Israel Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-14699 SP - 347 EP - 357 ER - TY - JOUR A1 - Schiffers, Katja A1 - Tielbörger, Katja T1 - Ontogenetic shifts in interactions among annual plants N2 - 1.Interactions among plants are key processes that strongly influence the structure and dynamics of plant populations and communities. However, most empirical studies of plant-plant inter­actions failed to repeatedly measure the plants? response to neighboring individuals and thereby neglected possible changes in interactions through­out the life history of the plants.2.Here, we tested the hypo­thesis that competition between annual species intensifies from early to late life history stages. To test this hypothesis, we sequentially measured interactions at different levels of water stress. 3.For this purpose, we con­ducted neighbor-removal experiments in three study sites located along a climatic gradient in Israel. The two annual species Biscutella didyma and Hymenocarpos circinnatus were used as target plants. They grew with and without neighbors in their natural habitats. Five response variables, according to the consecutive life-history stages, (seedling survival, juvenile biomass, adult survival, number of seeds and final biomass) were recorded through­out the whole growing season. 4.The results suggest that direction and inten­sity of inter­actions varied consider­ably between environ­ments and life stages. On average, growth-related response variables indicated higher competition intensity at the productive end of the climatic gradient, while survival indicated either facilitation at the dry end or no trend along the gradient. 5.Considering the temporal aspect, moderate facili­tation short after germi­nation shifted to strong compe­tition at the end of the growing season. 6.Our results highlight that the outcome of experi­mental studies on plant-plant inter­actions may not only depend on the environ­mental productivity but even more on the life stage at which a target plant is found. Y1 - 2006 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2745.2006.01097.x/pdf U6 - https://doi.org/10.1111/j.1365-2745.2006.01097.x ER - TY - JOUR A1 - Blasig, Ingolf E. A1 - Winkler, Lars A1 - Lassowski, Birgit A1 - Müller, Sandra L. A1 - Zuleger, Nikolaj A1 - Krause, Eberhard A1 - Krause, Gerd A1 - Gast, Klaus A1 - Kolbe, Michael A1 - Piontek, Jörg T1 - On the self-association potential of transmembrane tight junction proteins N2 - Tight junctions seal intercellular clefts via membrane-related strands, hence, maintaining important organ functions. We investigated the self-association of strand-forming transmembrane tight junction proteins. The regulatory tight junction protein occludin was differently tagged and cotransfected in eucaryotic cells. These occludins colocalized within the plasma membrane of the same cell, coprecipitated and exhibited fluorescence resonance energy transfer. Differently tagged strand-forming claudin-5 also colocalized in the plasma membrane of the same cell and showed fluorescence resonance energy transfer. This demonstrates self-association in intact cells both of occludin and claudin-5 in one plasma membrane. In search of dimerizing regions of occludin, dimerization of its cytosolic C-terminal coiled-coil domain was identified. In claudin-5, the second extracellular loop was detected as a dimer. Since the transmembrane junctional adhesion molecule also is known to dimerize, the assumption that homodimerization of transmembrane tight junction proteins may serve as a common structural feature in tight junction assembly is supported Y1 - 2006 UR - http://www.springerlink.com/content/101193 U6 - https://doi.org/10.1007/s00018-005-5472-x SN - 1420-682X ER - TY - JOUR A1 - Maurer, Katrin A1 - Weyand, Anne A1 - Fischer, Markus A1 - Stöcklin, Jürg T1 - Old cultural traditions, in addition to land use and topography, are shaping plant diversity of grasslands in the Alps N2 - Socio-economically motivated land use changes are a major threat for species diversity of grasslands throughout the world. Here, we comprehensively explore how plant species diversity of grasslands in the species-rich cultural landscape of the Swiss Alps depends on recent land use changes, and, neglected in previous studies, on old cultural traditions. We studied diversity in 216 grassland parcels at three altitudinal levels in 12 villages of three cultural traditions (Romanic, Germanic, and Walser). In valleys of Romanic villages more different parcel types tended to occur than in those of Germanic and Walser villages, suggesting that socio-economic differences among cultural traditions still play a role in shaping landscape diversity. Moreover, at the village level, higher man-made landscape diversity was associated with higher plant species richness. All observed changes in land use reduced the farmers' workload. Plant species richness was lower in fertilized than in unfertilized parcels and in abandoned compared with used parcels. Grazing slightly reduced species richness compared with mowing among unfertilized parcels, while in fertilized parcels it had a positive influence. The highest species diversity was found in mown unfertilized subalpine grasslands. Nevertheless, moderate grazing of former meadows can be a valuable alternative to abandonment. We conclude that the ongoing changes in land use reduce plant species richness within parcels and at the landscape level. To preserve plant species diversity at the landscape level a high diversity of land use types has to be maintained. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/00063207 U6 - https://doi.org/10.1016/j.biocon.2006.01.005 SN - 0006-3207 ER - TY - JOUR A1 - Bianco, Pier Giorgio A1 - Zupo, V A1 - Ketmaier, Valerio T1 - Occurrence of the scalloped ribbonfish Zu cristatus(Lampridiformes) in coastal waters of the central Tyrrhenian Sea, Italy N2 - The occurrence of two individuals of Zu cristatus at 2 m depth in coastal waters of the Gulf of Castellamare (Tyrrhenian Sea, Italy) together with records of this rare pan-Oceanic mesopelagic species is reported. Analyses of two mitochondrial genes (12 s and 16 s; 936 bp) revealed a 2.6% sequence divergence between Mediterranean and Pacific (Japanese) samples of the species. Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0022-1112 U6 - https://doi.org/10.1111/j.1095-8649.2006.00980.x SN - 0022-1112 ER - TY - JOUR A1 - Deschamps, Philippe A1 - Haferkamp, Ilka A1 - Dauvillee, David A1 - Haebel, Sophie A1 - Steup, Martin A1 - Buleon, Alain A1 - Putaux, Jean-Luc A1 - Colleoni, Christophe A1 - d'Hulst, Christophe A1 - Plancke, Charlotte A1 - Gould, Sven A1 - Maier, Uwe A1 - Neuhaus, Heinz Eckhard A1 - Ball, Steven G. T1 - Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta N2 - The nature of the periplastidial pathway of starch biosynthesis was investigated with the model cryptophyte Guillardia theta. The storage polysaccharide granules were shown to be composed of both amylose and amylopectin fractions with a chain length distribution and crystalline organization very similar to those of starch from green algae and land plants. Most starch granules displayed a shape consistent with biosynthesis occurring around the pyrenoid through the rhodoplast membranes. A protein with significant similarity to the amylose-synthesizing granule-bound starch syntbase 1 from green plants was found as the major polypeptide bound to the polysaccharide matrix. N-terminal sequencing of the mature protein proved that the precursor protein carries a nonfunctional transit peptide in its bipartite topogenic signal sequence which is cleaved without yielding transport of the enzyme across the two inner plastid membranes. The enzyme was shown to display similar affinities for ADP and UDP-glucose, while the V-max measured with UDP-glucose was twofold higher. The granule-bound starch synthase from Guillardia theta was demonstrated to be responsible for the synthesis of long glucan chains and therefore to be the functional equivalent of the amylose- synthesizing enzyme of green plants. Preliminary characterization of the starch pathway suggests that Guillardia theta utilizes a UDP-glucose-based pathway to synthesize starch Y1 - 2006 UR - http://ec.asm.org/ U6 - https://doi.org/10.1128/Ec.00380-05 SN - 1535-9778 ER - TY - JOUR A1 - Micheel, Burkhard T1 - Monoclonal Antibodies Y1 - 2006 SN - 978-3-540-44244-8 ER - TY - JOUR A1 - Ketmaier, Valerio A1 - Giusti, Folco A1 - Caccone, Adalgisa T1 - Molecular phylogeny and historical biogeography of the land snail genus Solatopupa (Pulmonata) in the peri- Tyrrhenian area N2 - The land snail genus Solatopupa consists of six species and has a peri-Tyrrhenian distribution; most of the species have a very narrow range and all of them except one (Solatopupa cianensis, which inhabits porphyritic rocks) are strictly bound to calcareous substrates. One species (Solatopupa gidoni) is limited to Sardinia, Corsica, and Elba Island. Because the potential for dispersal of these snails is low, the insular range of this species has been traditionally related to the Oligocenic detachment of the Sardinia-Corsica microplate from the Iberian plate and its subsequent rotation towards the Italian peninsula. In this Study, we used sequences of three mitochondrial and one nuclear gene to reconstruct the evolutionary history of the genus. Our phylogenetic results are consistent with the genetic relationships found using allozymes, but contrast with the phylogenetic hypotheses based on karyology and morphology. Molecular clock estimates indicate that the main cladogenetic events in the genus occurred between the middle Miocene and the middle-late Pliocene. Patterns of phylogenetic relationships and geological considerations suggest that the cladogenesis of the genus can be explained by vicariant (tectonic) processes. Our datings do not support a causal relation between the split of S. guidoni from its continental sister taxon and the initial phases of the detachment of the Corsica-Sardinia microplate from the mainland. On the contrary, time estimates coincide with the very last phase of detachment of the microplate (from 5 to 3 Myrs ago). Overall, our molecular clock estimates are in good agreement with the latest geological views on the tectonic evolution of the peri-Tyrrhenian area. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/10557903 U6 - https://doi.org/10.1016/j.ympev.2005.12.008 SN - 1055-7903 ER - TY - JOUR A1 - Wachten, Sebastian A1 - Schlenstedt, Jana A1 - Gauss, Renate A1 - Baumann, Arnd T1 - Molecular identification and functional characterization of an adenylyl cyclase from the honeybee N2 - Cyclic AMP (cAMP) serves as an important messenger in virtually all organisms. In the honeybee (Apis mellifera), cAMP-dependent signal transduction has been implicated in behavioural processes as well as in learning and memory. Key components of cAMP-signalling cascades are adenylyl cyclases. However, the molecular identities and biochemical properties of adenylyl cyclases are completely unknown in the honeybee. We have cloned a cDNA (Amac3) from honeybee brain that encodes a membrane-bound adenylyl cyclase. The Amac3 gene is an orthologue of the Drosophila ac39E gene. The corresponding proteins share an overall amino acid similarity of approximately 62%. Phylogenetically, AmAC3 belongs to group 1 adenylyl cyclases. Heterologously expressed AmAC3 displays basal enzymatic activity and efficient coupling to endogenous G protein signalling pathways. Stimulation of beta-adrenergic receptors induces AmAC3 activity with an EC50 of about 3.1 mu m. Enzymatic activity is also increased by forskolin (EC50 approximately 15 mu m), a specific agonist of membrane-bound adenylyl cyclases. Similar to certain biogenic amine receptor genes of the honeybee, Amac3 transcripts are expressed in many somata of the brain, especially in mushroom body neurones. These results suggest that the enzyme serves in biogenic amine signal transduction cascades and in higher brain functions that contribute to learning and memory of the bee Y1 - 2006 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1471-4159.2006.03666.x/full U6 - https://doi.org/10.1111/j.1471-4159.2006.03666.x ER - TY - JOUR A1 - Müssig, Carsten A1 - Lisso, Janina A1 - Coll-Garcia, Danahe A1 - Altmann, Thomas T1 - Molecular analysis of brassinosteroid action N2 - Brassinosteroids (BRs) are steroidal plant hormones with important regulatory roles in various physiological processes, including growth, xylem differentiation, disease resistance, and stress tolerance. Several components of the BR signal transduction pathway have been identified. The extracellular domains of receptor kinases such as BRI1 perceive BRs and transduce the signal via intracellular kinase domains. Within the cell further kinases and phosphatases determine the phosphorylation status of transcription factors such as BES1 and BZR1. These factors mediate major BR effects. Studies of BR-regulated genes shed light on the molecular mode of BR action. Genes encoding cell-wall-modifying enzymes, enzymes of the BR biosynthetic pathway, transcription factors, and proteins involved in primary and secondary metabolism are subject to BR-regulation. Gene expression data also point at interactions with other phytohormones and a role of BR in stress responses. This article gives a survey of the BR-signaling pathway. Two BR-responsive genes, OPR3 and EXO, are described in detail Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=1435-8603 U6 - https://doi.org/10.1055/s-2005-873043 ER - TY - GEN A1 - Tiedemann, Ralph A1 - Pfautsch, Simone T1 - MHC evolution in ducks and allies T2 - Journal of ornithology Y1 - 2006 SN - 0021-8375 VL - 147 IS - Supplement 1 SP - 48 EP - 48 PB - Blackwell CY - New York ER - TY - JOUR A1 - Morgenthal, Katja A1 - Weckwerth, Wolfram A1 - Steuer, Ralf T1 - Metabolomic networks in plants : transitions from pattern recognition to biological interpretation N2 - Nowadays techniques for non-targeted metabolite profiling allow for the generation of huge amounts of relevant data essential for the construction of dynamic metabolomic networks. Thus, metabolomics, besides transcriptomics or proteomics, provides a major tool for the characterization of postgenomic processes. In this work, we introduce comparative correlation analysis as a complementary approach to characterize the physiological states of various organs of diverse plant species with focus on specific participation of metabolites in different reaction networks. The correlations observed are induced by diminutive fluctuations in environmental conditions, which propagate through the system and induce specific patterns depending on the genomic background. In order to examine this hypothesis, numeric examples of such fluctuations are computed and compared with experimentally obtained metabolite data. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03032647 U6 - https://doi.org/10.1016/j.biosystems.2005.05.017 ER - TY - JOUR A1 - Lisso, Janina A1 - Altmann, Thomas A1 - Müssig, Carsten T1 - Metabolic changes in fruits of the tomato d(x) mutant JF - Phytochemistry : an international journal of plant biochemistry KW - Solanum lycopersicum KW - Solanaceae KW - tomato KW - brassinosteroid KW - primary metabolism KW - fruit Y1 - 2006 U6 - https://doi.org/10.1016/j.phytochem.2006.07.008 SN - 0031-9422 VL - 67 IS - 20 SP - 2232 EP - 2238 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Wood, C. C. A1 - Poree, Fabien A1 - Dreyer, Ingo A1 - Koehler, G. J. A1 - Udvardi, M. K. T1 - Mechanisms of ammonium transport, accumulation, and retention in ooyctes and yeast cells expressing Arabidopsis AtAMT1; 1 N2 - Ammonium is a primary source of N for plants, so knowing how it is transported, stored, and assimilated in plant cells is important for rational approaches to optimise N-use in agriculture. Electrophysiological studies of Arabidopsis AtAMT1;1 expressed in oocytes revealed passive, Delta psi-driven transport of NH4+ through this protein. Expression of AtAMT1;1 in a novel yeast mutant defective in endogenous ammonium transport and vacuolar acidification supported the above mechanism for AtAMT1;1 and revealed a central role for acid vacuoles in storage and retention of ammonia in cells. These results highlight the mechanistic differences between plant AMT proteins and related transporters in bacteria and animal cells, and suggest novel strategies to enhance nitrogen use efficiency in agriculture. (c) 2006 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved Y1 - 2006 UR - http://www.sciencedirect.com/science/article/pii/S0014579306007332 U6 - https://doi.org/10.1016/j.febslet.2006.06.026 ER - TY - JOUR A1 - Moustakas, Aristides A1 - Günther, Matthias A1 - Wiegand, Kerstin A1 - Müller, Karl-Heinz A1 - Ward, David A1 - Meyer, Katrin M. A1 - Jeltsch, Florian T1 - Long-term mortality patterns of the deep-rooted Acacia erioloba BT - The middle class shall die! JF - Journal of vegetation science N2 - Question: Is there a relationship between size and death in the Iona-lived, deep-rooted tree, Acacia erioloba, in a semi-arid savanna? What is the size-class distribution of A. erioloba mortality? Does the mortality distribution differ from total tree size distribution? Does A. erioloba mortality distribution match the mortality distributions recorded thus far in other environments? Location: Dronfield Ranch, near Kimberley, Kalahari, South Africa. Methods: A combination of aerial photographs and a satellite image covering 61 year was used to provide long-term spatial data on mortality. We used aerial photographs of the study area from 1940, 1964, 1984, 1993 and a satellite image from 2001 to follow three plots covering 510 ha. We were able to identify and individually follow ca. 3000 individual trees from 1940 till 2001. Results: The total number of trees increased over time. No relationship between total number of trees and mean tree size was detected. There were no trends over time in total number of deaths per plot or in size distributions of dead trees. Kolmogorov-Smirnov tests showed no differences in size class distributions for living trees through time. The size distribution of dead trees was significantly different from the size distribution of all trees present on the plots. Overall, the number of dead trees was low in small size classes, reached a peak value when canopy area was 20 - 30 m(2), and declined in lamer size-classes. Mortality as a ratio of dead vs. total trees peaked at intermediate canopy sizes too. Conclusion: A. erioloba mortality was size-dependent, peaking at intermediate sizes. The mortality distribution differs from all other tree mortality distributions recorded thus far. We suggest that a possible mechanism for this unusual mortality distribution is intraspecific competition for water in this semi-arid environment. KW - competition KW - long-term data KW - remote sensing KW - savanna KW - size dependent mortality KW - size distribution KW - tree death Y1 - 2006 U6 - https://doi.org/10.1111/j.1654-1103.2006.tb02468.x SN - 1100-9233 VL - 17 SP - 473 EP - 480 PB - Blackwell CY - Malden ER - TY - JOUR A1 - Apio, Ann A1 - Plath, Martin A1 - Wronski, Torsten T1 - Localised defecation sites : a tactic to avoid re-infection by gastro-intestinal tract parasites in bushbuck, Tragelaphus scriptus? N2 - Bushbuck (Tragelaphus scriptus) often deposit faeces at specific localised defecation sites (LDS). We tested whether LDS have a function in the context of parasite avoidance. In a population of bushbuck in Queen Elizabeth National Park, Uganda, seven radio-collared individuals were observed. We recorded feeding behaviour inside and outside LDS. Furthermore, pasture contamination with gastro-intestinal tract parasites inside and outside LDS was examined. There were significant differences between the expected and the observed feeding rates inside LDS, but, contrary to our prediction, the bushbuck increased their feeding rate inside LDS. There was no significant difference in the parasite contamination of pastures inside and outside LDS. We discuss the hypothesis that LDS mainly serve a social function in bushbuck communities, whereas parasite avoidance seems to play a minor or no role Y1 - 2006 UR - http://www.springerlink.com/content/105357 U6 - https://doi.org/10.1007/s10164-005-0166-2 SN - 0289-0771 ER - TY - JOUR A1 - Tews, Jörg A1 - Esther, Alexandra A1 - Milton, Sue J. A1 - Jeltsch, Florian T1 - Linking a population model with an ecosystem model : assessing the impact of land use and climate change on savanna shrub cover dynamics N2 - In semiarid savannas of Southern Africa current land use practices and climate change may lead to substantial changes of vegetation structure in the near future, however uncertainty remains about the potential consequences and the magnitude of change. In this paper we study the impact of climate change, cattle grazing, and wood cutting on shrub cover dynamics in savannas of the southern Kalahari. We use an established savanna ecosystem model to simulate landscape dynamics in terms of rainfall, fire and distribution of the dominant tree Acacia erioloba. We then incorporate these data into a spatial population model of the common, fleshy-fruited shrub Grewia flava and investigate shrub cover dynamics for a period of 100 years. Depending on the intensity of commercial wood cutting practices tree removal of A. erioloba led to a strong decline of the G. flava population, as shrub recruitment is concentrated in tree sub-canopies due to bird-mediated seed dispersal. Under climate change shrub cover slightly decreased with decreasing precipitation and was unchanged with increase in precipitation variability. Contrarily, grazing by cattle strongly increased shrub cover and facilitated shrub encroachment because of cattle-induced distribution of G. flava seeds into the matrix vegetation. Knowledge of the latter process is particularly important because shrub invasion is a major concern for conservation and savanna rangeland management as a result of its adverse effects on livestock carrying capacity and biodiversity Y1 - 2006 UR - http://www.mendeley.com/research/linking-a-population-model-with-an-ecosystem-model-assessing-the-impact- of-land-use-and-climate-change-on-savanna-shrub-cover-dynamics/#page-1 U6 - https://doi.org/10.1016/j.ecolmodel.2005.11.025 ER - TY - JOUR A1 - Tobler, Michael A1 - Schlupp, Ingo A1 - Heubel, Katja U. A1 - Riesch, Rudiger A1 - Garcia de Leon, Francisco J. A1 - Giere, Olav A1 - Plath, Martin T1 - Life on the edge: hydrogen sulfide and the fish communities of a Mexican cave and surrounding waters JF - Extremophiles : life under extreme conditions N2 - Most eucaryotic organisms classified as living in an extreme habitat are invertebrates. Here we report of a fish living in a Mexican cave (Cueva del Azufre) that is rich in highly toxic H2S. We compared the water chemistry and fish communities of the cave and several nearby surface streams. Our study revealed high concentrations of H2S in the cave and its outflow (El Azufre). The concentrations of H2S reach more than 300 mu M inside the cave, which are acutely toxic for most fishes. In both sulfidic habitats, the diversity of fishes was heavily reduced, and Poecilia mexicana was the dominant species indicating that the presence of H2S has an all-or-none effect, permitting only few species to survive in sulfidic habitats. Compared to habitats without H2S, P. mexicana from the cave and the outflow have a significantly lower body condition. Although there are microhabitats with varying concentrations of H2S within the cave, we could not find a higher fish density in areas with lower concentrations of H2S. We discuss that P. mexicana is one of the few extremophile vertebrates. Our study supports the idea that extreme habitats lead to an impoverished species diversity. KW - extremophile teleosts KW - Poecilia mexicana KW - cave fish KW - hypoxia KW - chemoautotrophy KW - condition factor Y1 - 2006 U6 - https://doi.org/10.1007/s00792-006-0531-2 SN - 1431-0651 VL - 10 SP - 577 EP - 585 PB - Springer CY - Tokyo ER - TY - JOUR A1 - Petru, Martina A1 - Tielbörger, Katja A1 - Belkin, Ruthie A1 - Sternberg, Marcelo A1 - Jeltsch, Florian T1 - Life history variation in an annual plant under two opposing environmental constraints along an aridity gradient N2 - Environmental gradients represent an ideal framework for studying adaptive variation in the life history of plant species. However, on very steep gradients, largely contrasting conditions at the two gradient ends often limit the distribution of the same species across the whole range of environmental conditions. Here, we study phenotypic variation in a winter annual crucifer Biscutella didyma persisting along a steep gradient of increasing rainfall in Israel. In particular, we explored whether the life history at the arid end of the gradient indicates adaptations to drought and unpredictable conditions, while adaptations to the highly competitive environment prevail at the mesic Mediterranean end. We examined several morphological and reproductive traits in four natural populations and in populations cultivated in standard common environment. Plants from arid environments were faster in phenological development, more branched in architecture and tended to maximize reproduction, while the Mediterranean plants invested mainly in vertical vegetative growth. Differences between cultivation and field in diaspore production were very large for arid populations as opposed to Mediterranean ones, indicating a larger potential to increase reproduction under favorable conditions. Our overall findings indicate two strongly opposing selective forces at the two extremes of the aridity gradient, which result in contrasting strategies within the studied annual plant species Y1 - 2006 UR - http://www3.interscience.wiley.com/journal/117966123/home U6 - https://doi.org/10.1111/j.2005.0906-7590.04310.x ER - TY - JOUR A1 - Michalski, S A1 - Gautschi, B A1 - Burkart, Michael A1 - Durka, Walter T1 - Isolation and characterization of microsatellite loci in the rush Juncus atratus (Juncaceae) Y1 - 2006 ER - TY - JOUR A1 - Singh, Jasbir A1 - Dani, Harinder M. A1 - Sharma, Reeta A1 - Steinberg, Pablo T1 - Inhibition of the biosynthesis of SRP polypeptides and secretory proteins by aflatoxin B-1 can disrupt protein targeting JF - Cell biochemistry and function N2 - Cell culture and western blotting studies revealed that aflatoxin B-1 (AFB(1)) inhibits the biosynthesis of two of the constituent polypeptides of signal recognition particle (SRP) (SRP54 and 72). SRP escorts polyribosomes carrying signal peptides from free form in the cytosol to the bound form on endoplasmic reticulum (ER) membrane during protein targeting. These effects of AFB(1) on SRP biosynthesis may inhibit the formation of functional SRP Our experiments have further shown that AFB(1) also inhibits the biosynthesis/translocation of a secretory protein, preprolactin, which fails to appear in the lumen of ER consequent to the treatment with this hepatocarcinogen. The results of the experiments presented in this article therefore enable us to infer for the first time that aflatoxin B-1 may inhibit the functioning of SRP as an escort and deplete the ER of polyribosomes for secretory protein synthesis. As these secretory proteins are important components of the plasma membrane, gap junctions and intercellular matrix, their absence from these locations could disturb cell to cell communication leading to tumorigenesis. KW - aflatoxin B-1 KW - SRP KW - protein targeting KW - protein translocation KW - western blotting Y1 - 2005 U6 - https://doi.org/10.1027/cbf.1285 SN - 0263-6484 VL - 24 SP - 507 EP - 510 PB - Wiley CY - Chichester ER - TY - GEN A1 - Ten Freyhaus, Henrik A1 - Huntgeburth, Michael A1 - Wingler, Kirstin A1 - Baeumer, A. T. A1 - Wartenberg, Maria A1 - Sauer, H. A1 - Bekhite, Mohamed M. A1 - Rosenkranz, S. T1 - Inhibition of ROS liberation by the novel nox inhibitor VAS2870 attenuates PDGF-dependent src activation and chemotaxis, but not proliferation in vascular smooth muscle cells T2 - European heart journal Y1 - 2006 SN - 0195-668X SN - 1522-9645 VL - 27 SP - 965 EP - 965 PB - Oxford University Press CY - Oxford ER - TY - JOUR A1 - Loew, Noya A1 - Bogdanoff, Peter A1 - Herrmann, Iris A1 - Wollenberger, Ursula A1 - Scheller, Frieder W. A1 - Katterle, Martin T1 - Influence of modifications on the efficiency of pyrolysed CoTMPP as electrode material for horseradish peroxidase and the reduction of hydrogen peroxide JF - Electroanalysis : an international journal devoted to fundamental and practical aspects of electroanalysis N2 - A tailor-made horseradish peroxidase (HRP) bulk composite electrode was developed on the basis of pyrolyzed cobalt tetramethoxyphenylporphyrin (CoTMPP) by modifying pore size and surface area of the porous carbon material through varying amounts of iron oxalate and sulfur prior to pyrolyzation. The materials were used to immobilize horseradish peroxidase (HRP). These electrodes were characterized in terms of their efficiency to reduce hydrogen peroxide. The heterogeneous electron transfer rate constants of different materials were determined with the rotating disk electrode method and a k(S) (401 +/- 61 s(-1)) exceeding previously reported values for native HRP was found. KW - cobalt porphyrin KW - electron transfer KW - horseradish peroxidase KW - hydrogen peroxide KW - immobilization Y1 - 2006 U6 - https://doi.org/10.1002/elan.200603664 SN - 1040-0397 VL - 18 IS - 23 SP - 2324 EP - 2330 PB - Wiley-VCH CY - Weinheim ER - TY - THES A1 - Treplin, Simone T1 - Inference of phylogenetic relationships in passerine birds (Aves: Passeriformes) using new molecular markers T1 - Neue molekulare Marker für die Phylogenie der Sperlingsvögel (Aves: Passeriformes) N2 - The aim of this study was to provide deeper insights in passerine phylogenetic relationships using new molecular markers. The monophyly of the largest avian order Passeriformes (~59% of all living birds) and the division into its suborders suboscines and oscines are well established. Phylogenetic relationships within the group have been extremely puzzling, as most of the evolutionary lineages originated through rapid radiation. Numerous studies have hypothesised conflicting passerine phylogenies and have repeatedly stimulated further research with new markers. In the present study, I used three different approaches to contribute to the ongoing phylogenetic debate in Passeriformes. I investigated the recently introduced gene ZENK for its phylogenetic utility for passerine systematics in combination and comparison to three already established nuclear markers. My phylogenetic analyses of a comprehensive data set yielded highly resolved, consistent and strongly supported trees. I was able to show the high utility of ZENK for elucidating phylogenetic relationships within Passeriformes. For the second and third approach, I used chicken repeat 1 (CR1) retrotransposons as phylogenetic markers. I presented two specific CR1 insertions as apomorphic characters, whose presence/absence pattern significantly contributed to the resolution of a particular phylogenetic uncertainty, namely the position of the rockfowl species Picathartes spp. in the passerine tree. Based on my results, I suggest a closer relationship of these birds to crows, ravens, jays, and allies. For the third approach, I showed that CR1 sequences contain phylogenetic signal and investigated their applicability in more detail. In this context, I screened for CR1 elements in different passerine birds, used sequences of several loci to construct phylogenetic trees, and evaluated their reliability. I was able to corroborate existing hypotheses and provide strong evidence for some new hypotheses, e.g. I suggest a revision of the taxa Corvidae and Corvinae as vireos are closer related to crows, ravens, and allies. The subdivision of the Passerida into three superfamilies, Sylvioidea, Passeroidea, and Muscicapoidea was strongly supported. I found evidence for a split within Sylvioidea into two clades, one consisting of tits and the other comprising warblers, bulbuls, laughingthrushes, whitethroats, and allies. Whereas Passeridae appear to be paraphyletic, monophyly of weavers and estrild finches as a separate clade was strongly supported. The sister taxon relationships of dippers and the thrushes/flycatcher/chat assemblage was corroborated and I suggest a closer relationship of waxwings and kinglets to wrens, tree-creepers, and nuthatches. N2 - Das Ziel dieser Arbeit war es, mittels neuer molekularer Marker zusätzliche Informationen über die phylogenetischen Verwandtschaftsverhältnisse der Sperlingsvögel (Passeriformes) zu erhalten. Die Monophylie der Passeriformes, der größten Vogelgruppe (~59% aller lebenden Arten), sowie ihrer Unterteilung in Suboscines und Oscines sind gut belegt. Die phylogenetischen Verwandtschaftsverhältnisse innerhalb dieser Gruppen sind jedoch seit jeher sehr schwer zu entschlüsseln, da sich die meisten Linien durch eine schnelle Radiation entwickelten. Zahlreiche Studien haben verschiedene Hypothesen zur Phylogenie der Sperlingsvögel aufgestellt und damit die Suche nach neuen Markern initiiert. In meiner Untersuchung habe ich drei verschiedene Ansätze benutzt, um zur Klärung der Phylogenie beizutragen. Ich untersuchte das kürzlich als Marker eingeführte ZENK-Gen im Hinblick auf seinen Nutzen in der Systematik der Sperlingsvögel in Kombination und im Vergleich zu drei bereits etablierten nukleären Markern. Meine phylogenetischen Analysen eines umfassenden Datensatzes ergaben hoch aufgelöste, konsistente und stark unterstütze Stammbäume, so dass ich den hohen Nutzwert des ZENK-Gens für die Klärung phylogenetischer Verwandtschaftsverhältnisse der Passeriformes zeigen konnte. Für den zweiten und dritten Ansatz habe ich Chicken Repeat 1 (CR1) Retrotransposons als phylogenetische Marker benutzt. Anhand zweier spezifischer CR1 Insertionen als apomorphe Merkmale und deren Insertionsmuster in verschiedenen Sperlingsvögeln konnte ich die phylogenetische Position der afrikanischen Felshüpfer, Picathartes spp., klären. Aufgrund meiner Ergebnisse schließe ich auf eine engere Verwandtschaft der Felshüpfer zu den Rabenvögeln. Durch meinen dritten Ansatz konnte ich nachweisen, dass CR1-Sequenzen phylogenetische Informationen enthalten, und untersuchte detailliert deren Anwendung als Marker. Dafür habe ich in verschiedenen Sperlingsvögeln nach CR1 Elementen gesucht und mit einigen dieser Sequenzen Stammbäume berechnet, um die Verlässlichkeit der Marker zu überprüfen. Durch meine Untersuchungen konnte ich existierende Hypothesen stützen und zusätzlich starke Hinweise auf neue Hypothesen finden. Beispielsweise schlage ich eine Revision der Taxa Corvidae und Corvinae vor, da Vireos eng mit den Rabenvögeln verwandt sind. Die Unterteilung der Passerida in die drei Unterfamilien Sylvioidea, Passeroidea und Muscicapoidea konnte deutlich bestätigt werden. Ich habe Hinweise auf eine Trennung der Sylvioidea in zwei taxonomische Gruppen erhalten, einer bestehend aus Meisen und Verwandten und der andere aus Grasmücken, Bülbüls, Häherlingen, Brillenvögeln und Verwandten. Während die Passeridae paraphyletisch sind, wurde die Monophylie der Weber und Astrilden als ein eigenes Taxon unterstützt. Das Schwestergruppenverhältnis zwischen Wasseramseln und dem Drossel/Fliegenschnäpper/Schmätzer-Taxon wurde ebenfalls bestätigt. Außerdem habe ich Hinweise auf eine nähere Verwandtschaft zwischen Seidenschwänzen und Goldhähnchen zu Zaunkönigen, Baumläufern und Kleibern gefunden. KW - Passeriformes KW - Phylogenie KW - ZENK KW - Retrotransposon KW - Chicken Repeat KW - Passeriformes KW - phylogeny KW - ZENK KW - retrotransposon KW - chicken repeat 1 Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-11230 ER - TY - JOUR A1 - Schulz, Tim Julius A1 - Thierbach, Renè A1 - Voigt, Anja A1 - Drewes, Gunnar A1 - Mietzner, Brun A1 - Steinberg, Pablo A1 - Pfeiffer, Andreas F. H. A1 - Ristow, Michael T1 - Induction of oxidative metabolism by mitochondrial frataxin inhibits cancer growth : Otto Warburg revisited N2 - More than 80 years ago Otto Warburg suggested that cancer might be caused by a decrease in mitochondrial energy metabolism paralleled by an increase in glycolytic flux. In later years, it was shown that cancer cells exhibit multiple alterations in mitochondrial content, structure, function, and activity. We have stably overexpressed the Friedreich ataxia-associated protein frataxin in several colon cancer cell lines. These cells have increased oxidative metabolism, as shown by concurrent increases in aconitase activity, mitochondrial membrane potential, cellular respiration, and ATP content. Consistent with Warburg's hypothesis, we found that frataxin-overexpressing cells also have decreased growth rates and increased population doubling times, show inhibited colony formation capacity in soft agar assays, and exhibit a reduced capacity for tumor formation when injected into nude mice. Furthermore, overexpression of frataxin leads to an increased phosphorylation of the tumor suppressor p38 mitogen-activated protein kinase, as well as decreased phosphorylation of extracellular signal-regulated kinase. Taken together, these results support the view that an increase in oxidative metabolism induced by mitochondrial frataxin may inhibit cancer growth in mammals Y1 - 2006 UR - http://www.jbc.org/content/281/2/977.full.pdf+html U6 - https://doi.org/10.1074/jbc.M511064200 ER - TY - JOUR A1 - Cederkvist, F. Henning A1 - Zamfir, Alina D. A1 - Bahrke, Sven A1 - Eijsink, Vincent G. H. A1 - Sorlie, Morten A1 - Peter-Katalinic, Jasna A1 - Peter, Martin G. T1 - Identification of a high-affinity-binding oligosaccharide by (+) nanoelectrospray quadrupole time-of-flight tandem mass spectrometry of a noncovalent enzyme-ligand complex Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/26737/ U6 - https://doi.org/10.1002/anie.200503168 SN - 1433-7851 ER - TY - GEN A1 - Köchy, Martin A1 - Tielbörger, Katja T1 - Hydrothermal time model of germination : parameters for 36 Mediterranean annual species based on a simplified approach N2 - Germination rates and germination fractions of seeds can be predicted well by the hydrothermal time (HTT) model. Its four parameters hydrothermal time, minimum soil temperature, minimum soil moisture, and variation of minimum soil moisture, however, must be determined by lengthy germination experiments at combinations of several levels of soil temperature and moisture. For some applications of the HTT model it is more important to have approximate estimates for many species rather than exact values for only a few species. We suggest that minimum temperature and variation of minimum moisture can be estimated from literature data and expert knowledge. This allows to derive hydrothermal time and minimum moisture from existing data from germination experiments with one level of temperature and moisture. We applied our approach to a germination experiment comparing germination fractions of wild annual species along an aridity gradient in Israel. Using this simplified approach we estimated hydrothermal time and minimum moisture of 36 species. Comparison with exact data for three species shows that our method is a simple but effective method for obtaining parameters for the HTT model. Hydrothermal time and minimum moisture supposedly indicate climate related germination strategies. We tested whether these two parameters varied with the climate at the site where the seeds had been collected. We found no consistent variation with climate across species, suggesting that variation is more strongly controlled by site-specific factors. N2 - Keimungsgeschwindigkeit und Anteil gekeimter Samen lassen sich gut mit dem Hydrothermalzeit-Modell bestimmen. Dessen vier Parameter Hydrothermalzeit, Mindesttemperatur, Mindestbodenfeuchte und Streuung der Mindestbodenfeuchte müssen jedoch durch aufwendige Keimungsversuche bei Kombinationen von mehreren Temperatur- und Feuchtigkeitsstufen bestimmt werden. Für manche Anwendungen des Hydrothermalzeit-Modells sind aber ungefähre Werte für viele Arten wichtiger als genaue Werte für wenige Arten. Wenn die Mindesttemperatur und die Streuung der Mindestfeuchte aus Veröffentlichungen und Expertenwissen geschätzt würde, können die Hydrothermalzeit und Mindestbodenfeuchte aus vorhandenen Daten von Keimungsversuchen mit nur einer Temperatur- und Feuchtigkeitsstufe berechnet werden. Wir haben unseren Ansatz auf einen Keimungsversuch zum Vergleich der Keimungsquote wilder einjähriger Arten entlang eines Trockenheitsgradienten in Israel angewendet. Mit diesem Ansatz bestimmten wir die Hydrothermalzeit und Mindestfeuchtigkeit von 36 Arten. Der Vergleich mit genauen Werten für drei Arten zeigt, dass mit unserem Ansatz Hydrothermalzeit-Parameter einfach und effektiv bestimmt werden können. Hydrothermalzeit und Mindestfeuchtigkeit sollten auch bestimmte klimabedingte Keimungsstrategien anzeigen. Deshalb testeten wir, ob diese zwei Parameter mit dem Klima am Ursprungsort der Samen zusammenhängen. Wir fanden jedoch keinen für alle Arten übereinstimmenden Zusammenhang, so dass die Unterschiede vermutlich stärker durch standörtliche als durch klimatische Ursachen hervorgerufen werden. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - paper 022 KW - Keimungsrate KW - Dormanz KW - Hydrothermalzeit-Modell KW - einjährige Pflanzen KW - Mittelmeerraum KW - germination rate KW - dormancy KW - hydrothermal time model KW - annual plant species KW - Mediterranean Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-12406 ER - TY - JOUR A1 - Leimu, Roosa A1 - Mutikainen, Pia A1 - Koricheva, Julia A1 - Fischer, Markus T1 - How general are positive relationships between plant population size, fitness and genetic variation? N2 - 1 Relationships between plant population size, fitness and within-population genetic diversity are fundamental for plant ecology, evolution and conservation. We conducted meta-analyses of studies published between 1987 and 2005 to test whether these relationships are generally positive, whether they are sensitive to methodological differences among studies, whether they differ between species of different life span, mating system or rarity and whether they depend on the size ranges of the studied populations. 2 Mean correlations between population size, fitness and genetic variation were all significantly positive. The positive correlation between population size and female fitness tended to be stronger in field studies than in common garden studies, and the positive correlation between genetic variation and fitness was significantly stronger in DNA than in isoenzyme studies. 3 The strength and direction of correlations between population size, fitness and genetic variation were independent of plant life span and the size range of the studied populations. The mean correlations tended to be stronger for the rare species than for common species. 4 Expected heterozygosity, the number of alleles and the number or proportion of polymorphic loci significantly increased with population size, but the level of inbreeding F-IS was independent of population size. The positive relationship between population size and the number of alleles and the number or proportion of polymorphic loci was stronger in self- incompatible than in self-compatible species. Furthermore, fitness and genetic variation were positively correlated in self-incompatible species, but independent of each other in self-compatible species. 5 The close relationships between population size, genetic variation and fitness suggest that population size should always be taken into account in multipopulation studies of plant fitness or genetic variation. 6 The observed generality of the positive relationships between population size, plant fitness and genetic diversity implies that the negative effects of habitat fragmentation on plant fitness and genetic variation are common. Moreover, the stronger positive associations observed in self- incompatible species and to some degree in rare species, suggest that these species are most prone to the negative effects of habitat fragmentation Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0022-0477 U6 - https://doi.org/10.1111/j.1365-2745.2006.01150.x SN - 0022-0477 ER - TY - JOUR A1 - Huggenberger, Stefan A1 - Ridgway, Sam H. A1 - Oelschlager, Helmut H.A. A1 - Kirschenbauer, Irmgard A1 - Vogl, Thomas J. A1 - Klima, Milan T1 - Histological analysis of the nasal roof cartilage in a neonate sperm whale (Physeter macrocephalus : Mammalia, Odontoceti) N2 - The nasal roof cartilage of a neonate sperm whale (Physeter macrocephalus) was examined by gross dissection and routine histology. This cartilage is part of the embryonic Tectum nasi and is a critical feature in the formation of the massive sperm whale forehead. In neonates as well as in adults, the blade-like nasal roof cartilage extends diagonally through the huge nasal complex from the bony nares to the blowhole on the left side of the rostral apex of the head. It accompanies the left nasal passage along its entire length, which may reach several meters in adult males. The tissue of the nasal roof cartilage in the neonate whale shows an intermediate state of development. For example, in embryos and fetuses, the nasal roof cartilage consists of hyaline cartilage, but in adult sperm whales, it also includes elastic fibers. In our neonate sperm whale, the nasal roof cartilage already consisted of adult-like elastic cartilage. In addition, the active or growing, layer of the perichondrium was relatively thick compared to that of fetuses, and a large number of straight, elastic fibers that were arranged perpendicularly to the long axis of the nasal roof cartilage were present. These neonatal features call be interpreted as characteristics of immature and growing cartilaginous tissue. An important function of the nasal roof cartilage may be the stabilization of the left nasal passage, which is embedded within the soft tissue of the nasal complex. The nasal roof cartilage with its elastic fibers may keep the nasal passage open and prevent its collapse from Bernoulli forces during inhalation. Additionally, the intrinsic tension of the massive nasal musculature may be a source of compression on the nasal roof cartilage and could explain its hyaline character in the adult. In our neonate specimen, in contrast, the cartilaginous rostrum (i.e., mesorostral cartilage) consisted of hyaline cartilage with an ample blood supply. The cartilaginous rostrum does not change its histological characteristics during development, but its function In adults is still not understood. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/00445231 U6 - https://doi.org/10.1016/j.jcz.2006.01.001 SN - 0044-5231 ER - TY - JOUR A1 - Rauschmann, Michael A. A1 - Huggenberger, Stefan A1 - Kossatz, Lars Swen A1 - Oelschläger, Helmut H. A. T1 - Head morphology in perinatal dolphins: A window into phylogeny and ontogeny JF - Journal of morphology N2 - In this paper on the ontogenesis and evolutionary biology of odontocete cetaceans (toothed whales), we investigate the head morphology of three perinatal pantropical spotted dolphins (Stenella attenuata) with the following methods: computer-assisted tomography, magnetic resonance imaging, conventional X-ray imaging, cryo-sectioning as well as gross dissection. Comparison of these anatomical methods reveals that for a complete structural analysis, a combination of modern imaging techniques and conventional morphological methods is needed. In addition to the perinatal dolphins, we include series of microslides of fetal odontocetes (S. attenuata, common dolphin Delphinus delphis, narwhal Monodon monoceros). In contrast to other mammals, newborn cetaceans represent an extremely precocial state of development correlated to the fact that they have to swim and surface immediately after birth. Accordingly, the morphology of the perinatal dolphin head is very similar to that of the adult. Comparison with early fetal stages of dolphins shows that the ontogenetic change from the general mammalian bauplan to cetacean organization was characterized by profound morphological transformations of the relevant organ systems and roughly seems to parallel the phylogenetic transition. from terrestrial ancestors to modern odontocetes. KW - pantropical spotted dolphin KW - Stenella attenuata KW - comparative head morphology KW - ontogenesis KW - phylogenesis Y1 - 2006 U6 - https://doi.org/10.1002/jmor.10477 SN - 0362-2525 SN - 1097-4687 VL - 267 IS - 11 SP - 1295 EP - 1315 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Andresen, Heiko A1 - Grotzinger, Carsten A1 - Zarse, Kim A1 - Kreuzer, Oliver Johannes A1 - Ehrentreich-Förster, Eva A1 - Bier, Frank Fabian T1 - Functional peptide microarrays for specific and sensitive antibody diagnostics N2 - Peptide microarrays displaying biologically active small synthetic peptides in a high-density format provide an attractive technology to probe complex samples for the presence and/or function of protein analytes. We present a new approach for manufacturing functional peptide microarrays for molecular immune diagnostics. Our method relies on the efficiency of site-specific solution-phase coupling of biotinylated synthetic peptides to NeutrAvidin (NA) and localized microdispensing of peptide-NA-complexes onto activated glass surfaces. Antibodies are captured in a sandwich manner between surface immobilized peptide probes and fluorescence-labeled secondary antibodies. Our work includes a total of 54 peptides derived from immunodominant linear epitopes of the T7 phage capsid protein, Herpes simplex virus glycoprotein D, c-myc protein, and three domains of the Human coronavirus polymerase polyprotein and their cognate mAbs. By using spacer molecules of different type and length for NA-mediated peptide presentation, we show that the incorporation of a minimum spacer length is imperative for antibody binding, whereas the peptide immobilization direction has only secondary importance for antibody affinity and binding. We further demonstrate that the peptide array is capable of detecting low-picomolar concentrations of mAbs in buffered solutions and diluted human serum with high specificity Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/76510741 U6 - https://doi.org/10.1002/pmic.200500343 SN - 1615-9853 ER - TY - THES A1 - Bieniawska, Zuzanna T1 - Functional analysis of the sucrose synthase gene family in Arabidopsis thaliana T1 - Funktionelle Analyse der Saccharose Synthase Genfamilie in Arabidopsis thaliana N2 - Sucrose synthase (Susy) is a key enzyme of sucrose metabolism, catalysing the reversible conversion of sucrose and UDP to UDP-glucose and fructose. Therefore, its activity, localization and function have been studied in various plant species. It has been shown that Susy can play a role in supplying energy in companion cells for phloem loading (Fu and Park, 1995), provides substrates for starch synthesis (Zrenner et al., 1995), and supplies UDP-glucose for cell wall synthesis (Haigler et al., 2001). Analysis of the Arabidopsis genome identifies six Susy isoforms. The expression of these isoforms was investigated using promoter-reporter gene constructs (GUS) and real time RT-PCR. Although these isoforms are closely related at the protein level they have radically different spatial and temporal patterns of expression in the plant with no two isoforms showing the same distribution. More than one isoform is expressed in all organs examined. Some of them have high but specific expression in particular organs or developmental stages whilst others are constantly expressed throughout the whole plant and across various stages of development. The in planta function of the six Susy isoforms were explored through analysis of T-DNA insertion mutants and RNAi lines. Plants without the expression of individual isoforms show no differences in growth and development, and are not significantly different from wild type plants in soluble sugars, starch and cellulose contents under all growth conditions investigated. Analysis of T-DNA insertion mutant lacking Sus3 isoform that was exclusively expressed in stomata cells only had a minor influence on guard cell osmoregulation and/or bioenergetics. Although none of the sucrose synthases appear to be essential for normal growth under our standard growth conditions, they may be necessary for growth under stress conditions. Different isoforms of sucrose synthase respond differently to various abiotic stresses. It has been shown that oxygen deprivation up regulates Sus1 and Sus4 and increases total Susy activity. However, the analysis of the plants with reduced expression of both Sus1 and Sus4 revealed no obvious effects on plant performance under oxygen deprivation. Low temperature up regulates Sus1 expression but the loss of this isoform has no effect on the freezing tolerance of non acclimated and cold acclimated plants. These data provide a comprehensive overview of the expression of this gene family which supports some of the previously reported roles for Susy and indicates the involvement of specific isoforms in metabolism and/or signalling. N2 - Saccharose spielt eine zentrale Rolle in höheren Pflanzen. Es zählt zu den wichtigsten Kohlenhydraten und wird als Nährstoff, Speicherstoff (z.B. in Zuckerrüben, Zuckerrohr, Mohrrüben) oder auch als potentielles Signalmolekül verwendet. Saccharose ist eines der primären Endprodukte der Photosynthese in den grünen Blättern der Pflanzen, kann aber auch in nicht-photosynthetisch aktiven Geweben (z.B. in keimenden Samen) synthetisiert und verstoffwechselt werden. Die Saccharosesynthase (Susy) stellt ein Schlüsselenzym im Saccharosestoffwechsel dar. Es katalysiert die reversible Umwandlung von Saccharose zu UDP-Glukose und Fruktose. Die Aktivität, die Lokalisierung und die Funktionen der Susy wurden bereits in verschiedenen Pflanzenarten untersucht. Dabei hatte sich herausgestellt, daß die Susy eine wichtige Rolle in der Bereitstellung von Energie für Transportprozesse spielt. Außerdem stellt Susy die Substrate für die Stärkesynthese in Speichergeweben, sowie fast alle Substrate für die Zellwandsynthese bereit. Eine Untersuchung des Genoms von Arabidopsis thaliana ergab, daß die Ackerschmalwand sechs Isoformen der Susy besitzt. Die Expression dieser Isoformen wurde mittels Echtzeit RT-PCR analysiert. Obwohl die verschiedenen Isoformen auf Proteinebene in ihrer Sequenz sehr ähnlich sind, zeigen sie Unterschiede in ihrem zeitlichen und räumlichen Auftreten innerhalb der Pflanze. Einige der Isoformen sind hoch exprimiert in speziellen Organen oder Entwicklungsstufen der Pflanze. Andere hingegen sind gleichmäßig in der ganzen Pflanze und über verschiedene Entwicklungsstufen hinaus exprimiert. In allen untersuchten Organen der Pflanze ist mehr als eine Isoform exprimiert. Um die spezifische Funktion der einzelnen Isoformen aufzuklären, wurden für alle sechs Saccharosesynthasen Mutanten-Linien isoliert und analysiert. Alle Pflanzen, bei denen die Expression einer bestimmten Isoform fehlte, zeigten im Vergleich zu Wildtyppflanzen keine signifikanten Unterschiede in Wachstum und Entwicklung. Des Weiteren waren die Gehalte an Stärke, Saccharose und Zellulose in Blättern und Wurzeln im Vergleich zu Wildtyppflanzen unverändert. Mutanten, denen die ausschließlich in Schließzellen lokalisierte Isoform Sus3 fehlte, zeigten nur geringe Veränderungen in der Osmoregulation und/oder der Bioenergetik der Schließzellen. Daraus kann gefolgert werden, dass in dem Ackerunkraut Arabidopsis keine der Saccharosesynthasen essentiell für normales Wachstum unter Standardbedingungen ist. Es ist jedoch möglich, dass Saccharosesynthasen unter Stressbedingungen benötigt werden. Es war bereits bekannt, dass einzelne Isoformen der Susy auf Stress reagieren und in ihrer Expression verändert sind. Es konnte gezeigt werden, daß Sauerstoffmangel zu einer Erhöhung der Expression der Isoformen Sus1 und Sus4 und zu einer Zunahme der Susy Gesamtaktivität führt. Die Analyse von Pflanzen mit reduzierter Expression von Sus1 und Sus4 zeigte jedoch, dass Sauerstoffmangel keinen offensichtlichen Einfluss auf das Wachstum dieser Pflanzen hat. Niedrige Temperaturen führen zu einer Erhöhung der Sus1 Expression, aber auch ein Verlust dieser Isoform hat keinen Einfluss auf die Gefriertoleranz von normalen oder an Kälte akklimatisierten Pflanzen. Diese Ergebnisse bieten einen umfassenden Einblick in die Expression der Genfamilie der Saccharosesynthase; sie untermauern die genannten Funktionen der Saccharosesynthase und weisen auf eine mögliche Beteiligung mehrerer Isoformen am Saccharosestoffwechsel und/oder der Signaltransduktion hin. KW - Saccharose Synthase KW - Genfamilie KW - Ackerschmalwand KW - sucrose synthase KW - gene family KW - Arabidopsis thaliana Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-13132 ER - TY - CHAP A1 - Popp, Alexander A1 - Blaum, Niels A1 - Domptail, Stephanie A1 - Herpel, Nicole A1 - Gröngröft, Alexander A1 - Hoffman, T. T. A1 - Jürgens, Norbert A1 - Milton, Sue A1 - Nuppenau, Ernst-August A1 - Rossmanith, Eva A1 - Schmidt, Michael A1 - Vogel, Melanie A1 - Vohland, Katrin A1 - Jeltsch, Florian T1 - From satellite imagery to soil-plant interactions BT - integrating disciplines and scales in process based simulation models N2 - Decisions for the conservation of biodiversity and sustainable management of natural resources are typically related to large scales, i.e. the landscape level. However, understanding and predicting the effects of land use and climate change on scales relevant for decision-making requires to include both, large scale vegetation dynamics and small scale processes, such as soil-plant interactions. Integrating the results of multiple BIOTA subprojects enabled us to include necessary data of soil science, botany, socio-economics and remote sensing into a high resolution, process-based and spatially-explicit model. Using an example from a sustainably-used research farm and a communally used and degraded farming area in semiarid southern Namibia we show the power of simulation models as a tool to integrate processes across disciplines and scales. Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-7302 N1 - Interdisziplinäres Zentrum für Musterdynamik und Angewandte Fernerkundung Workshop vom 9. - 10. Februar 2006. [Poster] ER - TY - JOUR A1 - Rein, Julia A1 - Zimmermann, Bernhard A1 - Hille, Carsten A1 - Lang, Ingo A1 - Walz, Bernd A1 - Baumann, Otto T1 - Fluorescence measurements of serotonin-induced V-ATPase-dependent pH changes at the luminal surface in salivary glands of the blowfly Calliphora vicina N2 - Secretion in blowfly salivary glands is induced by the neurohormone serotonin and powered by a vacuolar-type H+- ATPase (V-ATPase) located in the apical membrane of the secretory cells. We have established a microfluorometric method for analysing pH changes at the luminal surface of the secretory epithelial cells by using the fluorescent dye 5-N- hexadecanoyl-aminofluorescein (HAF). After injection of HAF into the lumen of the tubular salivary gland, the fatty acyl chain of the dye molecule partitions into the outer leaflet of the plasma membrane and its pH-sensitive fluorescent moiety is exposed at the cell surface. Confocal imaging has confirmed that HAF distributes over the entire apical membrane of the secretory cells and remains restricted to this membrane domain. Ratiometric analysis of HAF fluorescence demonstrates that serotonin leads to a reversible dose-dependent acidification at the luminal surface. Inhibition by concanamycin A confirms that the serotonin-induced acidification at the luminal surface is due to H+ transport across the apical membrane via V-ATPase. Measurements with pH-sensitive microelectrodes corroborate a serotonin-induced luminal acidification and demonstrate that luminal pH decreases by about 0.4 pH units at saturating serotonin concentrations. We conclude that ratiometric measurements of HAF fluorescence provide an elegant method for monitoring V-ATPase-dependent H+ transport in the blowfly salivary gland in vivo and for analysing the spatiotemporal pattern of pH changes at the luminal surface Y1 - 2006 UR - http://jeb.biologists.org/ U6 - https://doi.org/10.1242/Jeb.02187 SN - 0022-0949 ER - TY - JOUR A1 - Liu, Songqin A1 - Wollenberger, Ursula A1 - Katterle, Martin A1 - Scheller, Frieder W. T1 - Ferroceneboronic acid-based amperometric biosensor for glycated hemoglobin N2 - An amperometric biosensor for the determination of glycated hemoglobin in human whole blood is proposed. The principle is based on the electrochemical measurement of ferroceneboronic acid (FcBA) that has been specifically bound to the glycated N-terminus. Hemoglobin is immobilized on a zirconium dioxide nanoparticle modified pyrolytic graphite electrode (PGE) in the presence of didodecyldimethylammonium bromide (DDAB). The incubation of this sensor in FcBA solution leads to the formation of an FcBA-modified surface due to the affinity interaction between boronate and the glycated sites of the hemoglobin. The binding of FcBA results in well-defined redox peaks with an E-0' of 0.299 V versus Ag/AgCl (1 M KCl). The square wave voltammetric response of the bound FcBA reflects the amount of glycated hemoglobin at the surface. This signal increases linearily with the degree of glycated hemoglobin from 6.8 to 14.0% of total immobilized hemoglobin. The scheme was applied to the determination of the fraction of glycated hemoglobin in whole blood samples. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/09254005 U6 - https://doi.org/10.1016/j.snb.2005.07.011 SN - 0925-4005 ER - TY - JOUR A1 - Plath, Martin A1 - Rohde, Matthias A1 - Schröder, Thekla A1 - Taebel-Hellwig, Angelika A1 - Schlupp, Ingo T1 - Female mating preferences in blind cave tetras Astyanax fasciatus (Characidae, Teleostei) N2 - The Mexican tetra Astyanax fasciatus has evolved a variety of more or less color- and eyeless cave populations. Here we examined the evolution of the female preference for large male body size within different populations of this species, either surface- or cave-dwelling. Given the choice between visual cues from a large and a small male, females from the surface form as well as females from an eyed cave form showed a strong preference for large males. When only non-visual cues were presented in darkness, the surface females did not prefer either males. Among the six cave populations studied, females of the eyed cave form and females of one of the five eyeless cave populations showed a preference for large males. Apparently, not all cave populations of Astyanax have evolved non-visual mating preferences. We discuss the role of selection by benefits of non-visual mate choice for the evolution of non-visual mating preferences Y1 - 2006 UR - http://www.bibliothek.uni-regensburg.de/ezeit/?2007939 U6 - https://doi.org/10.1163/156853906775133560 SN - 0005-7959 ER - TY - GEN A1 - Schmoll, Tim A1 - Schurr, Frank Martin A1 - Winkel, W. A1 - Lubjuhn, Thomas T1 - Female extra-pair mating, fitness and genetic diversity: Expression in socially monogamous Coal Tits T2 - Journal of ornithology Y1 - 2006 SN - 0021-8375 VL - 147 SP - 248 EP - 248 PB - Elsevier CY - New York ER - TY - JOUR A1 - Johansson, Ingela A1 - Wulfetange, Klaas A1 - Poree, Fabien A1 - Michard, Erwan A1 - Gajdanowicz, Pawel A1 - Lacombe, Benoit A1 - Sentenac, Herve A1 - Thibaud, Jean-Baptiste A1 - Müller-Röber, Bernd A1 - Blatt, Michael R. A1 - Dreyer, Ingo T1 - External K+ modulates the activity of the Arabidopsis potassium channel SKOR via an unusual mechanism N2 - Plant outward-rectifying K+ channels mediate K+ efflux from guard cells during stomatal closure and from root cells into the xylem for root-shoot allocation of potassium (K). Intriguingly, the gating of these channels depends on the extracellular K+ concentration, although the ions carrying the current are derived from inside the cell. This K+ dependence confers a sensitivity to the extracellular K+ concentration ([K+]) that ensures that the channels mediate K+ efflux only, regardless of the [K+] prevailing outside. We investigated the mechanism of K+-dependent gating of the K+ channel SKOR of Arabidopsis by site-directed mutagenesis. Mutations affecting the intrinsic K+ dependence of gating were found to cluster in the pore and within the sixth transmembrane helix (S6), identifying an 'S6 gating domain' deep within the membrane. Mapping the SKOR sequence to the crystal structure of the voltage-dependent K+ channel KvAP from Aeropyrum pernix suggested interaction between the S6 gating domain and the base of the pore helix, a prediction supported by mutations at this site. These results offer a unique insight into the molecular basis for a physiologically important K+-sensory process in plants Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0960-7412 U6 - https://doi.org/10.1111/j.1365-313X.2006.02690.X SN - 0960-7412 ER - TY - THES A1 - Niehl, Annette Christine T1 - Exploring defence responses in the compatible interaction between potato and potato Virus X : the cell wall matters Y1 - 2006 CY - Potsdam ER - TY - JOUR A1 - Leupold, Dieter A1 - Lokstein, Heiko A1 - Scheer, Hugo T1 - Excitation energy transfer between (bacterio)chlorophylls : the role of excitonic coupling Y1 - 2006 ER - TY - THES A1 - Hett, Anne Kathrin T1 - Evolution of nuclear DNA in sturgeons Y1 - 2006 CY - Potsdam ER - TY - JOUR A1 - Halamek, Jan A1 - Teller, Carsten A1 - Makower, Alexander A1 - Fournier, Didier A1 - Scheller, Frieder W. T1 - EQCN-based cholinesterase biosensors N2 - The binding of acetylcholinesterase (AChE) to a propidium-modified piezoelectric quartz crystal and its surface enzymatic activity have been investigated. Propidium binds to a site remote to the active center of AChE - the peripheral anionic site (PAS) - which is located on the rim of the gorge to the active site. The gold electrodes of the quartz crystal were first modified with 11-mercaptoundecanoic acid to which propidium was coupled. AChE binding was monitored by a quartz crystal nanobalance (QCN), followed by amperometric activity evaluation of the AChE loaded on the sensor. Interestingly, the binding is strong but does not inhibit AChE. However, an excess of propidium in solution inhibits the immobilized enzyme. The surface enzymatic activities observed depend on the amount of enzyme and differ according to the type and species, i.e. number of enzyme subunits (Electrophorus electricus tetrameric, Drosophila melanogaster mono- and dimeric form - DmAChE). The operational stability and regeneration, effect of propidium in solution and detection limit for substrate for various AChEs were investigated amperometrically. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/00134686 U6 - https://doi.org/10.1016/j.electacta.2006.03.047 SN - 0013-4686 ER - TY - JOUR A1 - Beissenhirtz, Moritz Karl A1 - Scheller, Frieder W. A1 - Viezzoli, Maria Silvia A1 - Lisdat, Fred T1 - Engineered superoxide dismutase monomers for superoxide biosensor applications N2 - Because of its high reaction rate and specificity, the enzyme superoxide dismutase (SOD) offers great potential for the sensitive quantification of superoxide radicals in electrochemical biosensors. In this work, monomeric mutants of human Cu,Zn-SOD were engineered to contain one or two additional cysteine residues, which could be used to bind the protein to gold surfaces, thus making the use of promotor molecules unnecessary. Six mutants were successfully designed, expressed, and purified. All mutants bound directly to unmodified gold surfaces via the sulfur of the cysteine residues and showed a quasireversible, direct electron transfer to the electrode. Thermodynamic and kinetic parameters of the electron transfer were characterized and showed only slight variations between the individual mutants. For one of the mutants, the interaction with the superoxide radical was studied in more detail. For both partial reactions of the dismutation, an interaction between protein and radical could be shown. In an amperometric biosensorial approach, the SOD-mutant electrode was successfully applied for the detection of superoxide radicals. In the oxidation region, the electrode surpassed the sensitivity of the commonly used cytochrome c electrodes by similar to 1 order of magnitude while not being limited by interferences, but the electrode did not fully reach the sensitivity of dimeric Cu,Zn-SOD immobilized on MPA-modified gold Y1 - 2006 UR - http://pubs.acs.org/journal/ancham U6 - https://doi.org/10.1021/Ac051465g SN - 0003-2700 ER - TY - JOUR A1 - Feulner, Philine G. D. A1 - Kirschbaum, Frank A1 - Schugardt, Christian A1 - Ketmaier, Valerio A1 - Tiedemann, Ralph T1 - Electrophysiological and molecular genetic evidence for sympatrically occuring cryptic species in African weakly electric fishes (Teleostei : Mormyridae : Campylomormyrus) N2 - For two sympatric species of African weakly electric fish, Campylomormyrus tamandua and Campylomormyrus numenius, we monitored ontogenetic differentiation in electric organ discharge (EOD) and established a molecular phylogeny, based on 2222 bp from cytochrome b, the S7 ribosomal protein gene, and four flanking regions of unlinked microsatellite loci. In C tamandua, there is one common EOD type, regardless of age and sex, whereas in C numenius we were able to identify three different male adult EOD waveform types, which emerged from a single common EOD observed in juveniles. Two of these EOD types formed well supported clades in our phylogenetic analysis. In an independent line of evidence, we were able to affirm the classification into three groups by microsatellite data. The correct assignment and the high pairwise FST values support our hypothesis that these groups are reproductively isolated. We propose that in C numenius there are cryptic species, hidden behind similar and, at least as juveniles, identical morphs. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/10557903 U6 - https://doi.org/10.1016/j.ympev.2005.09.008 SN - 1055-7903 ER - TY - JOUR A1 - Kapp, Andreas A1 - Beissenhirtz, Moritz Karl A1 - Geyer, F. A1 - Scheller, Frieder W. A1 - Viezzoli, Maria Silvia A1 - Lisdat, Fred T1 - Electrochemical and sensorial behaviour of SOD mutants immobilized on gold electrodes in aqueous / organic solvent mixtures Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/26571/ U6 - https://doi.org/10.1002/elan.200603620 SN - 1040-0397 ER - TY - JOUR A1 - Stuckas, H A1 - Tiedemann, Ralph T1 - Eight new microsatellite loci for the critically endangered fire-bellied toad Bombina bombina and their cross- species applicability among anurans N2 - We describe eight new microsatellite loci for the critically endangered fire-bellied toad, Bombina bombina. Seven of them are polymorphic with two to seven alleles per locus, an expected heterozygosity between 0.41 and 0.8, and an observed heterozygosity between 0.27 and 0.7. The yield of new loci was relatively low, presumably due to mildly repetitive sequence motifs in microsatellite flanking regions. As typical for anurans, cross-species amplification was limited (here, to congeners Bombina orientalis and Bombina variegata). Combining these new loci with those already available provides a reasonable number of loci for population studies and pedigree analysis in Bombina Y1 - 2006 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1471-8286.2005.01171.x/pdf U6 - https://doi.org/10.1111/j.1471-8286.2005.01171.x ER - TY - JOUR A1 - Hille, Carsten A1 - Walz, Bernd T1 - Dopamine-induced graded intracellular Ca2+ elevation via the Na+-Ca2+ exchanger operating in the Ca2+-entry mode in cockroach salivary ducts N2 - Stimulation with the neurotransmitter dopamine causes an amplitude-modulated increase in the intracellular Ca2+ concentration ([Ca2+](i)) in epithelial cells of the ducts of cockroach salivary glands. This is completely attributable to a Ca2+ influx from the extracellular space. Additionally, dopamine induces a massive [Na+](i) elevation via the Na+- K+-2Cl(-) cotransporter (NKCC). We have reasoned that Ca2+-entry is mediated by the Na+-Ca2+ exchanger (NCE) operating in the Ca2+-entry mode. To test this hypothesis, [Ca2+](i) and [Na+](i) were measured by using the fluorescent dyes Fura- 2, Fluo-3, and SBFI. Inhibition of Na+-entry from the extracellular space by removal of extracellular Na+ or inhibition of the NKCC by 10 mu M bumetanide did not influence resting [Ca2+]i but completely abolished the dopamine-induced [Ca2+](i) elevation. Simultaneous recordings of [Ca2+](i) and [Na+](i) revealed that the dopamine-induced [Na+](i) elevation preceded the [Ca2+](i) elevation. During dopamine stimulation, the generation of an outward Na+ concentration gradient by removal of extracellular Na+ boosted the [Ca2+](i) elevation. Furthermore, prolonging the dopamine-induced [Na+](i) rise by blocking the Na+/K+-ATPase reduced the recovery from [Ca2+](i) elevation. These results indicate that dopamine induces a massive NKCC-mediated elevation in [Na+](i), which reverses the NCE activity into the reverse mode causing a graded [Ca2+](i) elevation in the duct cells. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/01434160 U6 - https://doi.org/10.1016/j.ceca.2005.11.006 SN - 0143-4160 ER - TY - JOUR A1 - Skirycz, Aleksandra A1 - Reichelt, Michael A1 - Burow, Meike A1 - Birkemeyer, Claudia Sabine A1 - Rolcik, Jacub A1 - Kopka, Joachim A1 - Zanor, Maria Ines A1 - Gershenzon, Jonathan A1 - Strnad, Miroslav A1 - Szopa, Jan A1 - Müller-Röber, Bernd A1 - Witt, Isabell T1 - DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis N2 - Glucosinolates are a group of secondary metabolites that function as defense substances against herbivores and micro-organisms in the plant order Capparales. Indole glucosinolates (IGS), derivatives of tryptophan, may also influence plant growth and development. In Arabidopsis thaliana, indole-3-acetaldoxime (IAOx) produced from tryptophan by the activity of two cytochrome P450 enzymes, CYP79B2 and CYP79B3, serves as a precursor for IGS biosynthesis but is also an intermediate in the biosynthetic pathway of indole-3-acetic acid (IAA). Another cytochrome P450 enzyme, CYP83B1, funnels IAOx into IGS. Although there is increasing information about the genes involved in this biochemical pathway, their regulation is not fully understood. OBP2 has recently been identified as a member of the DNA-binding-with-one- finger (DOF) transcription factors, but its function has not been studied in detail so far. Here we report that OBP2 is expressed in the vasculature of all Arabidopsis organs, including leaves, roots, flower stalks and petals. OBP2 expression is induced in response to a generalist herbivore, Spodoptera littoralis, and by treatment with the plant signalling molecule methyl jasmonate, both of which also trigger IGS accumulation. Constitutive and inducible over- expression of OBP2 activates expression of CYP83B1. In addition, auxin concentration is increased in leaves and seedlings of OBP2 over-expression lines relative to wild-type, and plant size is diminished due to a reduction in cell size. RNA interference-mediated OBP2 blockade leads to reduced expression of CYP83B1. Collectively, these data provide evidence that OBP2 is part of a regulatory network that regulates glucosinolate biosynthesis in Arabidopsis Y1 - 2006 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2006.02767.x/full ER - TY - THES A1 - Weckwerth, Wolfram T1 - Development and applications of mass spectrometric techniques in plant physiology, biochemistry and systems biology : quantifying the molecular phenotype Y1 - 2006 CY - Potsdam ER - TY - JOUR A1 - Herzschuh, Ulrike A1 - Kürschner, Harald A1 - Battarbee, Rick A1 - Holmes, Jonathan T1 - Desert plant pollen production and a 160-year record of vegetation and climate change on the Alashan Plateau, NW China N2 - Recent and subfossil pollen spectra from the Alashan Plateau are presented in order to provide information on desert plant representation and on recent changes in vegetation and climate in this remote area in northern China. The desert vegetation composition is faithfully represented by the surface pollen spectra. The comparison of the desert plant species to the related pollen taxa yielded the following sequence from over-representation to under- representation: Chenopodiaceae, Artemisia, Ephedra fragilis-type s.l., Reaumuria, Nitraria and Calligonum. A 72 cm long sediment record from a small hydrologically-closed inter-dune lake (SE Badan Jilin Sand Sea, southern Alashan Plateau) covering the past similar to 160 years (dated by(137)Cs) was analysed palynologically. Intervals of denser Artemisia coverage on the sand dunes around the lake, indicating wetter climate, occurred from the mid-1850s to the mid-1870s, during the first two decades of the 20th century and from the late 1930s to the beginning of the 1960s Y1 - 2006 UR - http://www.springerlink.com/content/107470 U6 - https://doi.org/10.1007/s00334-005-0031-9 SN - 0939-6314 ER - TY - JOUR A1 - Wronski, Torsten A1 - Tiedemann, Ralph A1 - Apio, Ann A1 - Plath, Martin T1 - Cover, food, competitors and individual densities within bushbuck Tragelaphus scriptus female clan home ranges N2 - We examined factors predicting female densities within the common home ranges of related females ("clans") in bushbuck Tragelaphus scriptus Pallas, 1776. In this species, each female forms an individual home range, but the home ranges of matrilineal clan members strongly overlap. We found female densities to increase in areas with high canopy cover. Moreover, individual home range sizes tended to decrease with increasing cover. Food plant availability and intruder pressure by two heterospecific competitors did not significantly affect female densities. Apparently, canopy cover is the major limited resource in this species. A possible explanation is that both adult bushbuck and - even more markedly - fawns hide from predators in dense vegetation, in particular in thicket clumps and coalescences. The study shows an effect of habitat properties (eg sufficient canopy cover) on a within-population level in bushbuck, where female densities differ even among proximate clan areas Y1 - 2006 ER - TY - JOUR A1 - Reineking, Björn A1 - Schröder-Esselbach, Boris T1 - Constrain to perform : regularization of habitat models N2 - Predictive habitat models are an important tool for ecological research and conservation. A major cause of unreliable models is excessive model complexity, and regularization methods aim to improve the predictive performance by adequately constraining model complexity. We compare three regularization methods for logistic regression: variable selection, lasso, and ridge. They differ in the way model complexity is measured: variable selection uses the number of estimated parameters, the lasso uses the sum of the absolute values of the parameter estimates, and the ridge uses the sum of the squared values of the parameter estimates. We performed a simulation study with environmental data of a real landscape and artificial species occupancy data. We investigated the effect of three factors on relative model performance: (1) the number of parameters (16, 10, 6, 2) in the 'true' model that determined the distribution of the artificial species, (2) the prevalence, i.e. the proportion of sites occupied by the species, and (3) the sample size (measured in events per variable, EPV). Regularization improved model discrimination and calibration. However, no regularization method performed best under all circumstances: the ridge generally performed best in the 16-parameter scenario. The lasso generally performed best in the 10-parameter scenario. Variable selection with AIC was best at large sample sizes (EPV >= 10) when less than half of the variables influenced the species distribution. However, at low sample sizes (EPV < 10), ridge and lasso always performed best, regardless of the parameter scenario or prevalence. Overall, calibration was best in ridge models. Other methods showed overconfidence, particularly at low sample sizes. The percentage of correctly identified models was low for both lasso and variable selection. Variable selection should be used with caution. Although it can produce the best performing models under certain conditions, these situations are difficult to infer from the data. Ridge and lasso are risk-averse model strategies that can be expected to perform well under a wide range of underlying species-habitat relationships, particularly at small sample sizes. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03043800 U6 - https://doi.org/10.1016/j.ecolmodel.2005.10.003 SN - 0304-3800 ER -