TY - JOUR A1 - Scholz, Matthias A1 - Kaplan, F. A1 - Guy, C. L. A1 - Kopka, Joachim A1 - Selbig, Joachim T1 - Non-linear PCA : a missing data approach N2 - Motivation: Visualizing and analysing the potential non-linear structure of a dataset is becoming an important task in molecular biology. This is even more challenging when the data have missing values. Results: Here, we propose an inverse model that performs non-linear principal component analysis (NLPCA) from incomplete datasets. Missing values are ignored while optimizing the model, but can be estimated afterwards. Results are shown for both artificial and experimental datasets. In contrast to linear methods, non-linear methods were able to give better missing value estimations for non-linear structured data. Application: We applied this technique to a time course of metabolite data from a cold stress experiment on the model plant Arabidopsis thaliana, and could approximate the mapping function from any time point to the metabolite responses. Thus, the inverse NLPCA provides greatly improved information for better understanding the complex response to cold stress Y1 - 2005 SN - 1367-4803 ER - TY - JOUR A1 - Nienhaus, Marc A1 - Döllner, Jürgen Roland Friedrich T1 - Depicting dynamics using principles of visual art and narration's Y1 - 2005 SN - 0272-1716 ER - TY - JOUR A1 - Meinecke, Frank C. A1 - Harmeling, Stefan A1 - Müller, Klaus-Robert T1 - Inlier-based ICA with an application to superimposed images N2 - This paper proposes a new independent component analysis (ICA) method which is able to unmix overcomplete mixtures of sparce or structured signals like speech, music or images. Furthermore, the method is designed to be robust against outliers, which is a favorable feature for ICA algorithms since most of them are extremely sensitive to outliers. Our approach is based on a simple outlier index. However, instead of robustifying an existing algorithm by some outlier rejection technique we show how this index can be used directly to solve the ICA problem for super-Gaussian sources. The resulting inlier-based ICA (IBICA) is outlier-robust by construction and can be used for standard ICA as well as for overcomplete ICA (i.e. more source signals than observed signals). (c) 2005 Wiley Periodicals, Inc Y1 - 2005 SN - 0899-9457 ER - TY - JOUR A1 - Lemm, Steven A1 - Blankertz, Benjamin A1 - Curio, Gabriel A1 - Müller, Klaus-Robert T1 - Spatio-spectral filters for improving the classification of single trial EEG N2 - Data recorded in electroencephalogram (EEG)-based brain-computer interface experiments is generally very noisy, non-stationary, and contaminated with artifacts that can deteriorate discrimination/classification methods. In this paper, we extend the common spatial pattern (CSP) algorithm with the aim to alleviate these adverse effects. In particular, we suggest an extension of CSP to the state space, which utilizes the method of time delay embedding. As we will show, this allows for individually tuned frequency filters at each electrode position and, thus, yields an improved and more robust machine learning procedure. The advantages of the proposed method over the original CSP method are verified in terms of an improved information transfer rate (bits per trial) on a set of EEG-recordings from experiments of imagined limb movements Y1 - 2005 SN - 0018-9294 ER - TY - JOUR A1 - Meinecke, Frank C. A1 - Ziehe, Andreas A1 - Kurths, Jürgen A1 - Müller, Klaus-Robert T1 - Measuring phase synchronization of superimposed signals N2 - Phase synchronization is an important phenomenon that occurs in a wide variety of complex oscillatory processes. Measuring phase synchronization can therefore help to gain fundamental insight into nature. In this Letter we point out that synchronization analysis techniques can detect spurious synchronization, if they are fed with a superposition of signals such as in electroencephalography or magnetoencephalography data. We show how techniques from blind source separation can help to nevertheless measure the true synchronization and avoid such pitfalls Y1 - 2005 SN - 0031-9007 ER - TY - JOUR A1 - Gebser, Martin A1 - Liu, Lengning A1 - Namasivayam, Gayathri A1 - Neumann, André A1 - Schaub, Torsten H. A1 - Truszczynski, Miroslaw T1 - The first answer set programming system competition Y1 - 2007 SN - 978-3-540- 72199-4 ER - TY - JOUR A1 - Döllner, Jürgen Roland Friedrich T1 - Geospatial digital rights management in geovisualization N2 - Geovisualization offers powerful tools, techniques, and strategies to present, explore, analyze, and manage geoinformation. Interactive geovirtual environments such as virtual 3D maps or virtual 3D city models, however, raise the question how to control geodata usage and distribution. We present a concept for embedding digital rights in geovisualizations. It is based on geo-documents, an object-oriented scheme to specify a wide range of geo visualizations. Geo-documents are assembled by building blocks categorized into presentation, structure, interaction, animation, and Digital Rights Management (DRM) classes. DRM objects allow for defining permissions and constraints for all objects contained in geo-documents. In this way, authors of geo visualizations can control how their geo-documents are used, personalized, and redistributed by users. The strengths of the presented concept include the ability to integrate heterogeneous 2D and 3D geodata within a compact design scheme and the ability to cope with privacy, security, and copyright issues. Embedded digital rights in geovisualizations can be applied to improve the usability of geodata user interfaces, to implement publisher-subscriber communication systems for geodata, and to establish business models for geodata trading systems Y1 - 2005 SN - 0008-7041 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. T1 - Expressing default logic variants in default logic N2 - Reiter's default logic is one of the best known and most studied of the approaches to nonmonotonic reasoning. Several variants of default logic have subsequently been proposed to give systems with properties differing from the original. In this paper, we examine the relationship between default logic and its major variants. We accomplish this by translating a default theory under a variant interpretation into a second default theory, under the original Reiter semantics, wherein the variant interpretation is respected. That is, in each case we show that, given an extension of a translated theory, one may extract an extension of the original variant default logic theory. We show how constrained, rational, justified, and cumulative default logic can be expressed in Reiter's default logic. As well, we show how Reiter's default logic can be expressed in rational default logic. From this, we suggest that any such variant can be similarly treated. Consequently, we provide a unification of default logics, showing how the original formulation of default logic may express its variants. Moreover, the translations clearly express the relationships between alternative approaches to default logic. The translations themselves are shown to generally have good properties. Thus, in at least a theoretical sense, we show that these variants are in a sense superfluous, in that for any of these variants of default logic, we can exactly mimic the behaviour of a variant in standard default logic. As well, the translations lend insight into means of classifying the expressive power of default logic variants; specifically we suggest that the property of semi-monotonicity represents a division with respect to expressibility, whereas regularity and cumulativity do not Y1 - 2005 SN - 0955-792X ER - TY - JOUR A1 - Calude, C. S. A1 - Jurgensen, Helmut T1 - Is complexity a source of incompleteness? N2 - In this paper we prove Chaitin's "heuristic principle," the theorems of a finitely-specified theory cannot be significantly more complex than the theory itself, for an appropriate measure of complexity. We show that the measure is invariant under the change of the Godel numbering. For this measure, the theorems of a finitely-specified, sound, consistent theory strong enough to formalize arithmetic which is arithmetically sound (like Zermelo-Fraenkel set theory with choice or Peano Arithmetic) have bounded complexity, hence every sentence of the theory which is significantly more complex than the theory is unprovable. Previous results showing that incompleteness is not accidental, but ubiquitous are here reinforced in probabilistic terms: the probability that a true sentence of length n is provable in the theory tends to zero when n tends to infinity, while the probability that a sentence of length n is true is strictly positive. (c) 2004 Elsevier Inc. All rights reserved Y1 - 2005 SN - 0196-8858 ER - TY - JOUR A1 - Brzozowski, J. A. A1 - Jürgensen, Helmut T1 - Representation of semiautomata by canonical words and equivalences N2 - We study a novel representation of semiautomata, which is motivated by the method of trace-assertion specifications of software modules. Each state of the semiautomaton is represented by an arbitrary word leading to that state, the canonical word. The transitions of the semiautomaton give rise to a right congruence, the state-equivalence, on the set of input words of the semiautomaton: two words are state-equivalent if and only if they lead to the same state. We present a simple algorithm for finding a set of generators for state-equivalence. Directly from this set of generators, we construct a confluent prefix-rewriting system which permits us to transform any word to its canonical representative. In general, the rewriting system may allow infinite derivations. To address this issue, we impose the condition of prefix-continuity on the set of canonical words. A set is prefix-continuous if, whenever a word w and a prefix u of w axe in the set, then all the prefixes of w longer than u are also in the set. Prefix-continuous sets include prefix-free and prefix-closed sets as special cases. We prove that the rewriting system is Noetherian if and only if the set of canonical words is prefix-continuous. Furthermore, if the set of canonical words is prefix- continuous, then the set of rewriting rules is irredundant. We show that each prefix-continuous canonical set corresponds to a spanning forest of the semiautomaton Y1 - 2005 SN - 0129-0541 ER - TY - JOUR A1 - Bruggemeier, M. A1 - Dovifat, A. A1 - Kubisch, D. T1 - Micropolitical innovation arenas as a tool for analyzing innovation processes in the context of electronic government N2 - E-Government requires technical and organizational innovation. Research has already shown that the respective innovation process is complex and contingent upon specific organizational structures. Managing such innovation processes successfully is difficult. Drawing on assumptions of micropolitical behavior, a framework of innovation arenas is proposed. It supports the analysis of ongoing E-Government projects as well as the ex post investigation of successful or failed projects. Testing this framework in case studies already demonstrates its usefulness for individual actors making strategic choices about change management. Furthermore, the results indicate that many commonly held assumptions about successful change management have to be reconsidered Y1 - 2005 SN - 0937-6429 ER - TY - JOUR A1 - Bordihn, Henning A1 - Holzer, Markus A1 - Kutrib, Martin T1 - Unsolvability levels of operation problems for subclasses of context-free languages N2 - We investigate the operation problem for linear and deterministic context-free languages: Fix an operation on formal languages. Given linear (deterministic, respectively) context-free languages, is the application of this operation to the given languages still a linear (deterministic, respectively) context-free language? Besides the classical operations, for which the linear and deterministic context-free languages are not closed, we also consider the recently introduced root and power operation. We show non-semidecidability, to be more precise, we show completeness for the second level of the arithmetic hierarchy for all of the aforementioned operations, except for the power operation, if the underlying alphabet contains at least two letters. The result for the power opera, tion solves an open problem stated in Theoret. Comput. Sci. 314 (2004) 445-449 Y1 - 2005 SN - 0129-0541 ER - TY - JOUR A1 - Bordihn, Henning T1 - On the number of components in cooperating distributed grammar systems N2 - It is proved that the number of components in context-free cooperating distributed (CD) grammar systems can be reduced to 3 when they are working in the so-called sf-mode of derivation, which is the cooperation protocol which has been considered first for CD grammar systems. In this derivation mode, a component continues the derivation until and unless there is a nonterminal in the sentential form which cannot be rewritten according to that component. Moreover, it is shown that CD grammar systems in sf-mode with only one component can generate only the context-free languages but they can generate non-context-free languages if two components are used. The sf-mode of derivation is compared with other well-known cooperation protocols with respect to the hierarchies induced by the number of components. (C) 2004 Elsevier B.V. All rights reserved Y1 - 2005 SN - 0304-3975 ER - TY - JOUR A1 - Beerenwinkel, Niko A1 - Sing, Tobias A1 - Lengauer, Thomas A1 - Rahnenfuhrer, Joerg A1 - Roomp, Kirsten A1 - Savenkov, Igor A1 - Fischer, Roman A1 - Hoffmann, Daniel A1 - Selbig, Joachim A1 - Korn, Klaus A1 - Walter, Hauke A1 - Berg, Thomas A1 - Braun, Patrick A1 - Faetkenheuer, Gerd A1 - Oette, Mark A1 - Rockstroh, Juergen A1 - Kupfer, Bernd A1 - Kaiser, Rolf A1 - Daeumer, Martin T1 - Computational methods for the design of effective therapies against drug resistant HIV strains N2 - The development of drug resistance is a major obstacle to successful treatment of HIV infection. The extraordinary replication dynamics of HIV facilitates its escape from selective pressure exerted by the human immune system and by combination drug therapy. We have developed several computational methods whose combined use can support the design of optimal antiretroviral therapies based on viral genomic data Y1 - 2005 ER - TY - JOUR A1 - Scheffler, Thomas A1 - Schnor, Bettina T1 - Privacy Requirements for Embedded Sensor Devices N2 - This paper analyses data privacy issues as they arise from different deployment scenarios for networks that use embedded sensor devices. Maintaining data privacy in pervasive environments requires the management and implementation of privacy protection measures close to the data source. We propose a set of atomic privacy parameters that is generic enough to form specific privacy classes and might be applied directly at the embedded sensor device. Y1 - 2005 SN - 978-3-800729-09-8 ER - TY - JOUR A1 - Goessel, Michael A1 - Morozov, A. V. A1 - Sapozhnikov, V. V. A1 - Sapozhaikov, Vl. V. T1 - Checking combinational circuits by the method of logic complement N2 - Design of fully self-testing combinational circuits was considered. A theorem defining the conditions for guaranteed logic complement-based design of fully self-testing circuit was proved. Examples were presented Y1 - 2005 SN - 0005-1179 ER - TY - JOUR A1 - Anger, Christian A1 - Konczak, Kathrin A1 - Linke, Thomas A1 - Schaub, Torsten H. T1 - A Glimpse of Answer Set Programming Y1 - 2005 UR - http://www.cs.uni-potsdam.de/~konczak/Papers/ankolisc05.pdf SN - 0170-4516 ER - TY - JOUR A1 - Faber, Wolfgang A1 - Konczak, Kathrin T1 - Strong Equivalence for Logic Programs with Preferences Y1 - 2005 UR - http://www.cs.uni-potsdam.de/~konczak/Papers/fabkon05a.pdf ER - TY - JOUR A1 - Grell, Susanne A1 - Konczak, Kathrin A1 - Schaub, Torsten H. T1 - nomore) : a system for computing preferred Answer Sets Y1 - 2005 SN - 0302-9743 ER - TY - JOUR A1 - Anger, Christian A1 - Gebser, Martin A1 - Linke, Thomas A1 - Neumann, Andre A1 - Schaub, Torsten H. T1 - The nomore++ approach to answer set solving Y1 - 2005 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/angelinesc05c.pdf ER - TY - JOUR A1 - Gressmann, Jean A1 - Janhunen, Tomi A1 - Mercer, Robert E. A1 - Schaub, Torsten H. A1 - Thiele, Sven A1 - Tichy, Richard T1 - Platypus : a platform for distributed answer set solving Y1 - 2005 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/grjamescthti05a.pdf ER - TY - JOUR A1 - Konczak, Kathrin A1 - Vogel, Ralf T1 - Abduction and preferences in linguistics : Extended abstract Y1 - 2005 UR - http://www.cs.uni-potsdam.de/~konczak/Papers/konvog05b.pdf SN - 0302-9743 ER - TY - JOUR A1 - Konczak, Kathrin A1 - Lang, Jerome T1 - Voting procedures with incomplete preferences Y1 - 2005 UR - http://koala.ilog.fr/wiki/pub/Preference05/WsProceedings/Pref05.pdf ER - TY - JOUR A1 - Konczak, Kathrin A1 - Vogel, Ralf T1 - Abduction and Preferences in Linguistics Y1 - 2005 UR - http://www.cs.uni-potsdam.de/~konczak/Papers/konvog05a.pdf ER - TY - JOUR A1 - Camales, Renaud T1 - Explicit formulation of the solution of Hamada-Leray-Wagschal's theorem N2 - In this paper, an explicit formula of the solution of Hainada-Leray-Wagschal's theorem is given. For this, only structure's theorem of finite dimensional determination's function and linear algebra technics developped in [1] are used Y1 - 2005 SN - 0034-5318 ER - TY - JOUR A1 - Anger, Christian A1 - Gebser, Martin A1 - Linke, Thomas A1 - Neumann, Andre A1 - Schaub, Torsten H. T1 - The nomore++ approach to answer set solving Y1 - 2005 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/angelinesc05c.pdf ER - TY - JOUR A1 - Schneidenbach, Lars A1 - Schnor, Bettina T1 - Migration of MPI Applications to IPv6 Networks Y1 - 2005 SN - 0-88986-468-3 ER - TY - JOUR A1 - Konczak, Kathrin A1 - Linke, Thomas A1 - Schaub, Torsten H. T1 - Graphs and colorings for answer set programming N2 - We investigate the usage of rule dependency graphs and their colorings for characterizing and computing answer sets of logic programs. This approach provides us with insights into the interplay between rules when inducing answer sets. We start with different characterizations of answer sets in terms of totally colored dependency graphs that differ ill graph-theoretical aspects. We then develop a series of operational characterizations of answer sets in terms of operators on partial colorings. In analogy to the notion of a derivation in proof theory, our operational characterizations are expressed as (non-deterministically formed) sequences of colorings, turning an uncolored graph into a totally colored one. In this way, we obtain an operational framework in which different combinations of operators result in different formal properties. Among others, we identify the basic strategy employed by the noMoRe system and justify its algorithmic approach. Furthermore, we distinguish operations corresponding to Fitting's operator as well as to well-founded semantics Y1 - 2006 UR - http://www.cs.kuleuven.ac.be/~dtai/projects/ALP//TPLP/ U6 - https://doi.org/10.1017/S1471068405002528 SN - 1471-0684 ER - TY - JOUR A1 - Gebser, Martin A1 - Schaub, Torsten H. A1 - Thiele, Sven T1 - GrinGo : a new grounder for answer set programming Y1 - 2007 SN - 978-3-540- 72199-4 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Lang, Jérôme A1 - Schaub, Torsten H. T1 - Belief change based on global minimisation Y1 - 2007 ER - TY - JOUR A1 - Mileo, Alessandra A1 - Schaub, Torsten H. T1 - Qualitative constraint enforcement in advanced policy specification Y1 - 2007 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. A1 - Tompits, Hans T1 - A preference-based framework for updating logic programs Y1 - 2007 SN - 978-3-540- 72199-4 ER - TY - JOUR A1 - Hallama, Nicole A1 - Luckow, André A1 - Schnor, Bettina T1 - Grid Security for Fault Tolerant Grid Applications Y1 - 2006 SN - 978-1-880843-60-4 ER - TY - JOUR A1 - Luckow, André A1 - Schnor, Bettina T1 - Migol : a Fault Tolerant Service Framework for Grid Computing : Evolution to WSRF (2006) Y1 - 2006 ER - TY - JOUR A1 - Pernici, Barbara A1 - Weske, Mathias T1 - Business process management Y1 - 2006 SN - 0169-023X ER - TY - JOUR A1 - Friedrich, Sven A1 - Krahmer, Sebastian A1 - Schneidenbach, Lars A1 - Schnor, Bettina T1 - Loaded: Server Load Balancing for IPv6 N2 - With the next generation Internet protocol IPv6 at the horizon, it is time to think about how applications can migrate to IPv6. Web traffic is currently one of the most important applications in the Internet. The increasing popularity of dynamically generated content on the World Wide Web, has created the need for fast web servers. Server clustering together with server load balancing has emerged as a promising technique to build scalable web servers. The paper gives a short overview over the new features of IPv6 and different server load balancing technologies. Further, we present and evaluate Loaded, an user-space server load balancer for IPv4 and IPv6 based on Linux. Y1 - 2006 SN - 0-7695-2622-5 ER - TY - JOUR A1 - Mileo, Alessandra A1 - Schaub, Torsten H. T1 - Extending ordered disjunctions for policy enforcement : preliminary report Y1 - 2006 UR - http://www.easychair.org/FLoC-06/PREFS-preproceedings.pdf ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. A1 - Tompits, Hans T1 - An Extended Query language for action languages (and its application to aggregates and preferences) Y1 - 2006 UR - http://www2.in.tu-clausthal.de/~tmbehrens/NMR_Proc_TR4.pdf ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Liu, Daphne H. A1 - Schaub, Torsten H. A1 - Thiele, Sven T1 - COBA 2.0 : a consistency-based belief change system Y1 - 2006 UR - http://www2.in.tu-clausthal.de/~tmbehrens/NMR_Proc_TR4.pdf ER - TY - JOUR A1 - Kawanabe, Motoaki A1 - Blanchard, Gilles A1 - Sugiyama, Masashi A1 - Spokoiny, Vladimir G. A1 - Müller, Klaus-Robert T1 - A novel dimension reduction procedure for searching non-Gaussian subspaces N2 - In this article, we consider high-dimensional data which contains a low-dimensional non-Gaussian structure contaminated with Gaussian noise and propose a new linear method to identify the non-Gaussian subspace. Our method NGCA (Non-Gaussian Component Analysis) is based on a very general semi-parametric framework and has a theoretical guarantee that the estimation error of finding the non-Gaussian components tends to zero at a parametric rate. NGCA can be used not only as preprocessing for ICA, but also for extracting and visualizing more general structures like clusters. A numerical study demonstrates the usefulness of our method Y1 - 2006 UR - http://www.springerlink.com/content/105633/ U6 - https://doi.org/10.1007/11679363_19 SN - 0302-9743 ER - TY - JOUR A1 - Meinel, Christoph A1 - Wang, Long T1 - Building content clusters based on modelling page pairs N2 - We give a new view on building content clusters from page pair models. We measure the heuristic importance within every two pages by computing the distance of their accessed positions in usage sessions. We also compare our page pair models with the classical pair models used in information theories and natural language processing, and give different evaluation methods to build the reasonable content communities. And we finally interpret the advantages and disadvantages of our models from detailed experiment results Y1 - 2006 UR - http://www.springerlink.com/content/105633/ U6 - https://doi.org/10.1007/11610113_85 ER - TY - JOUR A1 - Laub, Julian A1 - Roth, Volker A1 - Buhmann, Joachim A1 - Müller, Klaus-Robert T1 - On the information and representation of non-Euclidean pairwise data N2 - Two common data representations are mostly used in intelligent data analysis, namely the vectorial and the pairwise representation. Pairwise data which satisfy the restrictive conditions of Euclidean spaces can be faithfully translated into a Euclidean vectorial representation by embedding. Non-metric pairwise data with violations of symmetry, reflexivity or triangle inequality pose a substantial conceptual problem for pattern recognition since the amount of predictive structural information beyond what can be measured by embeddings is unclear. We show by systematic modeling of non-Euclidean pairwise data that there exists metric violations which can carry valuable problem specific information. Furthermore, Euclidean and non-metric data can be unified on the level of structural information contained in the data. Stable component analysis selects linear subspaces which are particularly insensitive to data fluctuations. Experimental results from different domains support our pattern recognition strategy. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/00313203 U6 - https://doi.org/10.1016/j.patcog.2006.04.016 SN - 0031-3203 ER - TY - JOUR A1 - Willig, Andreas A1 - Mitschke, Robert T1 - Results of bit error measurements with sensor nodes and casuistic consequences for design of energy-efficient error control schemes N2 - For the proper design of energy-efficient error control schemes some insight into channel error patterns is needed. This paper presents bit error and packet loss measurements taken with sensor nodes running the popular RFM Y1 - 2006 SN - 978-3-540-32158-3 ER - TY - JOUR A1 - Meinel, Christoph A1 - Klotz, Volker T1 - The first 10 years of the ECCC digital library Y1 - 2006 UR - http://portal.acm.org/cacm U6 - https://doi.org/10.1145/1107458.1107484 ER - TY - JOUR A1 - Rozinat, A A1 - Van der Aalst, Wil M. P. T1 - Conformance testing: Measuring the fit and appropriateness of event logs and process models N2 - Most information systems log events (e.g., transaction logs, audit traits) to audit and monitor the processes they support. At the same time, many of these processes have been explicitly modeled. For example, SAP R/3 logs events in transaction logs and there are EPCs (Event-driven Process Chains) describing the so-called reference models. These reference models describe how the system should be used. The coexistence of event logs and process models raises an interesting question: "Does the event log conform to the process model and vice versa?". This paper demonstrates that there is not a simple answer to this question. To tackle the problem, we distinguish two dimensions of conformance: fitness (the event log may be the result of the process modeled) and appropriateness (the model is a likely candidate from a structural and behavioral point of view). Different metrics have been defined and a Conformance Checker has been implemented within the ProM Framework Y1 - 2006 ER - TY - JOUR A1 - Gerbser, Martin A1 - Schaub, Torsten H. T1 - Tableau calculi for answer set programming Y1 - 2006 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/gebsch06c.pdf U6 - https://doi.org/10.1007/11799573 SN - 0302-9743 ER - TY - JOUR A1 - Konczak, Kathrin T1 - Weak order equivalence for Logic Programs with Prefernces Y1 - 2006 ER - TY - JOUR A1 - Gerbser, Martin A1 - Schaub, Torsten H. T1 - Characterizing (ASP) inferences by unit propagation Y1 - 2006 ER - TY - JOUR A1 - Gerbser, Martin A1 - Lee, Joohyung A1 - Lierler, Yuliya T1 - Elementary sets for logic programs Y1 - 2006 SN - 978-1-57735-281-5 ER - TY - JOUR A1 - Anger, Christian A1 - Gebser, Martin A1 - Janhunen, Tomi A1 - Schaub, Torsten H. T1 - What's a head without a body? Y1 - 2006 ER - TY - JOUR A1 - Konczak, Kathrin T1 - Voting Theory in Answer Set Programming Y1 - 2006 ER - TY - JOUR A1 - Gressmann, Jean A1 - Janhunen, Tomi A1 - Mercer, Robert E. A1 - Schaub, Torsten H. A1 - Thiele, Sven A1 - Tichy, Richard T1 - On probing and multi-threading in platypus Y1 - 2006 ER - TY - JOUR A1 - Cordes, Frank A1 - Kaiser, Rolf A1 - Selbig, Joachim T1 - Bioinformatics approach to predicting HIV drug resistance N2 - The emergence of drug resistance remains one of the most challenging issues in the treatment of HIV-1 infection. The extreme replication dynamics of HIV facilitates its escape from the selective pressure exerted by the human immune system and by the applied combination drug therapy. This article reviews computational methods whose combined use can support the design of optimal antiretroviral therapies based on viral genotypic and phenotypic data. Genotypic assays are based on the analysis of mutations associated with reduced drug susceptibility, but are difficult to interpret due to the numerous mutations and mutational patterns that confer drug resistance. Phenotypic resistance or susceptibility can be experimentally evaluated by measuring the inhibition of the viral replication in cell culture assays. However, this procedure is expensive and time consuming Y1 - 2006 UR - http://www.expert-reviews.com/loi/erm U6 - https://doi.org/10.1586/14737159.6.2.207 SN - 1473-7159 ER - TY - JOUR A1 - Lemm, Steven A1 - Curio, Gabriel A1 - Hlushchuk, Yevhen A1 - Müller, Klaus-Robert T1 - Enhancing the signal-to-noise ratio of ICA-based extracted ERPs N2 - When decomposing single trial electroencephalography it is a challenge to incorporate prior physiological knowledge. Here, we develop a method that uses prior information about the phase-locking property of event-related potentials in a regularization framework to bias a blind source separation algorithm toward an improved separation of single-trial phase-locked responses in terms of an increased signal-to-noise ratio. In particular, we suggest a transformation of the data, using weighted average of the single trial and trial-averaged response, that redirects the focus of source separation methods onto the subspace of event-related potentials. The practical benefit with respect to an improved separation of such components from ongoing background activity and extraneous noise is first illustrated on artificial data and finally verified in a real-world application of extracting single-trial somatosensory evoked potentials from multichannel EEG-recordings Y1 - 2006 UR - http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=10 U6 - https://doi.org/10.1109/Tbme.2006.870258 SN - 0018-9294 ER - TY - JOUR A1 - Blankertz, Benjamin A1 - Dornhege, Guido A1 - Krauledat, Matthias A1 - Müller, Klaus-Robert A1 - Kunzmann, Volker A1 - Losch, Florian A1 - Curio, Gabriel T1 - The Berlin brain-computer interface : EEG-based communication without subject training N2 - The Berlin Brain-Computer Interface (BBCI) project develops a noninvasive BCI system whose key features are 1) the use of well-established motor competences as control paradigms, 2) high-dimensional features from 128-channel electroencephalogram (EEG), and 3) advanced machine learning techniques. As reported earlier, our experiments demonstrate that very high information transfer rates can be achieved using the readiness potential (RP) when predicting the laterality of upcoming left-versus right-hand movements in healthy subjects. A more recent study showed that the RP similarily accompanies phantom movements in arm amputees, but the signal strength decreases with longer loss of the limb. In a complementary approach, oscillatory features are used to discriminate imagined movements (left hand versus right hand versus foot). In a recent feedback study with six healthy subjects with no or very little experience with BCI control, three subjects achieved an information transfer rate above 35 bits per minute (bpm), and further two subjects above 24 and 15 bpm, while one subject could not achieve any BCI control. These results are encouraging for an EEG-based BCI system in untrained subjects that is independent of peripheral nervous system activity and does not rely on evoked potentials even when compared to results with very well-trained subjects operating other BCI systems Y1 - 2006 UR - http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=7333 U6 - https://doi.org/10.1109/Tnsre.2006.875557 SN - 1534-4320 ER - TY - JOUR A1 - Bobda, Christophe T1 - Special issue on ReCoSoC 2007 : editorial Y1 - 2009 UR - http://www.sciencedirect.com/science/journal/01419331 U6 - https://doi.org/10.1016/j.micpro.2009.01.001 SN - 0141-9331 ER - TY - JOUR A1 - Shenoy, Pradeep A1 - Krauledat, Matthias A1 - Blankertz, Benjamin A1 - Rao, Rajesh P. N. A1 - Müller, Klaus-Robert T1 - Towards adaptive classification for BCI N2 - Non-stationarities are ubiquitous in EEG signals. They are especially apparent in the use of EEG-based brain- computer interfaces (BCIs): (a) in the differences between the initial calibration measurement and the online operation of a BCI, or (b) caused by changes in the subject's brain processes during an experiment (e.g. due to fatigue, change of task involvement, etc). In this paper, we quantify for the first time such systematic evidence of statistical differences in data recorded during offline and online sessions. Furthermore, we propose novel techniques of investigating and visualizing data distributions, which are particularly useful for the analysis of (non-) stationarities. Our study shows that the brain signals used for control can change substantially from the offline calibration sessions to online control, and also within a single session. In addition to this general characterization of the signals, we propose several adaptive classification schemes and study their performance on data recorded during online experiments. An encouraging result of our study is that surprisingly simple adaptive methods in combination with an offline feature selection scheme can significantly increase BCI performance Y1 - 2006 UR - http://iopscience.iop.org/1741-2552/3/1/R02/ U6 - https://doi.org/10.1088/1741-2560/3/1/R02 ER - TY - JOUR A1 - Anger, Christian A1 - Gebser, Martin A1 - Schaub, Torsten H. T1 - Approaching the core of unfounded sets Y1 - 2006 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/angesc06a.pdf ER - TY - JOUR A1 - Gressmann, Jean A1 - Janhunen, Tomi A1 - Mercer, Robert E. A1 - Schaub, Torsten H. A1 - Thiele, Sven A1 - Tichy, Richard T1 - On probing and multi-threading in platypus Y1 - 2006 UR - http://www2.in.tu-clausthal.de/~tmbehrens/NMR_Proc_TR4.pdf ER - TY - JOUR A1 - Grell, Susanne A1 - Schaub, Torsten H. A1 - Selbig, Joachim T1 - Modelling biological networks by action languages via set programming Y1 - 2006 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/gebsch06c.pdf U6 - https://doi.org/10.1007/11799573 SN - 0302-9743 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. A1 - Tompits, Hans T1 - A Preference-Based Framework for Updating logic Programs : preliminary reports Y1 - 2006 UR - http://www.easychair.org/FLoC-06/PREFS-preproceedings.pdf ER - TY - JOUR A1 - Schneidenbach, Lars A1 - Schnor, Bettina T1 - Design Issues in the Implementation of MPI2 One Sided Communication in Ethernet based Networks N2 - In current research, one sided communication of the MPI2 standard is pushed as a promising technique [6, 7, 10, 18]. But measurements of applications and MPI2 primitives show a different picture [17]. In this paper we analyze de sign issues of MPI2 one sided communication and its im plementations. We focus on asynchronous communication for parallel applications in Ethernet cluster environments. Further, one sided communication is compared to two sided communication. This paper will prove that the key problem to performance is not only the implementation of MPI2 one sided communication - it is the design. Y1 - 2007 SN - 978-0-88986-637-9 ER - TY - JOUR A1 - Hoheisel, A. A1 - Müller, S. A1 - Schnor, Bettina T1 - Fine-grained Security Management in a Service-oriented Grid Architecture Y1 - 2007 UR - http://www.cyfronet.krakow.pl/cgw06/presentations/c4-3.pdf SN - 978-0-387-72811-7 ER - TY - JOUR A1 - Lis, Monika ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Constructing a Phylogenetic Tree JF - Process Design for Natural Scientists: an agile model-driven approach N2 - In this project I constructed a workflow that takes a DNA sequence as input and provides a phylogenetic tree, consisting of the input sequence and other sequences which were found during a database search. In this phylogenetic tree the sequences are arranged depending on similarities. In bioinformatics, constructing phylogenetic trees is often used to explore the evolutionary relationships of genes or organisms and to understand the mechanisms of evolution itself. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 101 EP - 109 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Hibbe, Marcel ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Spotlocator - Guess Where the Photo Was Taken! JF - Process Design for Natural Scientists: an agile model-driven approach N2 - Spotlocator is a game wherein people have to guess the spots of where photos were taken. The photos of a defined area for each game are from panoramio.com. They are published at http://spotlocator. drupalgardens.com with an ID. Everyone can guess the photo spots by sending a special tweet via Twitter that contains the hashtag #spotlocator, the guessed coordinates and the ID of the photo. An evaluation is published for all tweets. The players are informed about the distance to the real photo spots and the positions are shown on a map. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 149 EP - 160 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Vierheller, Janine ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Exploratory Data Analysis JF - Process Design for Natural Scientists: an agile model-driven approach N2 - In bioinformatics the term exploratory data analysis refers to different methods to get an overview of large biological data sets. Hence, it helps to create a framework for further analysis and hypothesis testing. The workflow facilitates this first important step of the data analysis created by high-throughput technologies. The results are different plots showing the structure of the measurements. The goal of the workflow is the automatization of the exploratory data analysis, but also the flexibility should be guaranteed. The basic tool is the free software R. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 110 EP - 126 PB - Axel Springer Verlag CY - Berlin ER - TY - JOUR A1 - Reso, Judith ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Protein Classification Workflow JF - Process Design for Natural Scientists: an agile model-driven approach N2 - The protein classification workflow described in this report enables users to get information about a novel protein sequence automatically. The information is derived by different bioinformatic analysis tools which calculate or predict features of a protein sequence. Also, databases are used to compare the novel sequence with known proteins. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 65 EP - 72 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Wickert, Alexander A1 - Margaria, Tiziana ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Lessons Learned JF - Process Design for Natural Scientists: an agile model-driven approach N2 - This chapter summarizes the experience and the lessons we learned concerning the application of the jABC as a framework for design and execution of scientific workflows. It reports experiences from the domain modeling (especially service integration) and workflow design phases and evaluates the resulting models statistically with respect to the SIB library and hierarchy levels. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 45 EP - 64 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Wickert, Alexander ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - The Course's SIB Libraries JF - Process Design for Natural Scientists: an agile model-driven approach N2 - This chapter gives a detailed description of the service framework underlying all the example projects that form the foundation of this book. It describes the different SIB libraries that we made available for the course “Process modeling in the natural sciences” to provide the functionality that was required for the envisaged applications. The students used these SIB libraries to realize their projects. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 30 EP - 44 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Margaria, Tiziana ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Scientific Workflows and XMDD JF - Process Design for Natural Scientists: an agile model-driven approach N2 - A major part of the scientific experiments that are carried out today requires thorough computational support. While database and algorithm providers face the problem of bundling resources to create and sustain powerful computation nodes, the users have to deal with combining sets of (remote) services into specific data analysis and transformation processes. Today’s attention to “big data” amplifies the issues of size, heterogeneity, and process-level diversity/integration. In the last decade, especially workflow-based approaches to deal with these processes have enjoyed great popularity. This book concerns a particularly agile and model-driven approach to manage scientific workflows that is based on the XMDD paradigm. In this chapter we explain the scope and purpose of the book, briefly describe the concepts and technologies of the XMDD paradigm, explain the principal differences to related approaches, and outline the structure of the book. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 1 EP - 13 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Margaria, Tiziana A1 - Steffen, Bernhard ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Modeling and Execution of Scientific Workflows with the jABC Framework JF - Process Design for Natural Scientists: an agile model-driven approach N2 - We summarize here the main characteristics and features of the jABC framework, used in the case studies as a graphical tool for modeling scientific processes and workflows. As a comprehensive environment for service-oriented modeling and design according to the XMDD (eXtreme Model-Driven Design) paradigm, the jABC offers much more than the pure modeling capability. Associated technologies and plugins provide in fact means for a rich variety of supporting functionality, such as remote service integration, taxonomical service classification, model execution, model verification, model synthesis, and model compilation. We describe here in short both the essential jABC features and the service integration philosophy followed in the environment. In our work over the last years we have seen that this kind of service definition and provisioning platform has the potential to become a core technology in interdisciplinary service orchestration and technology transfer: Domain experts, like scientists not specially trained in computer science, directly define complex service orchestrations as process models and use efficient and complex domain-specific tools in a simple and intuitive way. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 14 EP - 29 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Lai, Kwok-Wing A1 - Davis, Niki A1 - Eickelmann, Birgit A1 - Erstad, Ola A1 - Fisser, Petra A1 - Gibson, David A1 - Khaddage, Ferial A1 - Knezek, Gerald A1 - Webb, Mary T1 - Tackling Educational Challenges in a Digitally Networked World BT - Strategies developed from the EDUSummIT 2013 JF - KEYCIT 2014 - Key Competencies in Informatics and ICT KW - Assessment KW - computational thinking KW - digitally-enabled pedagogies KW - educational systems KW - informal and formal learning KW - mobile learning KW - mobile technologies and apps KW - organisational evolution Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-82997 SN - 1868-0844 IS - 7 SP - 415 EP - 423 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Wegner, Christian A1 - Zender, Raphael A1 - Lucke, Ulrike T1 - ProtoSense BT - Interactive Paper Prototyping with Multi-Touch Tables JF - KEYCIT 2014 - Key Competencies in Informatics and ICT KW - Interface design KW - paper prototyping KW - NUI Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-82970 SN - 1868-0844 SN - 2191-1940 IS - 7 SP - 405 EP - 407 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Przybylla, Mareen A1 - Romeike, Ralf T1 - Key Competences with Physical Computing JF - KEYCIT 2014 - Key Competencies in Informatics and ICT N2 - Physical computing covers the design and realization of interactive objects and installations and allows students to develop concrete, tangible products of the real world that arise from the learners’ imagination. This way, constructionist learning is raised to a level that enables students to gain haptic experience and thereby concretizes the virtual. In this paper the defining characteristics of physical computing are described. Key competences to be gained with physical computing will be identified. KW - Defining characteristics of physical computing KW - key competences in physical computing KW - physical computing tools Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-82904 SN - 1868-0844 SN - 2191-1940 IS - 7 SP - 351 EP - 361 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Lamprecht, Anna-Lena A1 - Margaria, Tiziana ED - Lamprecht, Anna-Lena ED - Margaria, Tiziana T1 - Scientific workflows and XMDD JF - Process design for natural scientists Y1 - 2015 SN - 978-3-662-45006-2 SP - 1 EP - 13 PB - Springer CY - Berlin ER - TY - JOUR A1 - Blaese, Leif T1 - Data mining for unidentified protein squences JF - Process design for natural scientists: an agile model-driven approach N2 - Through the use of next generation sequencing (NGS) technology, a lot of newly sequenced organisms are now available. Annotating those genes is one of the most challenging tasks in sequence biology. Here, we present an automated workflow to find homologue proteins, annotate sequences according to function and create a three-dimensional model. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 73 EP - 87 PB - Springer CY - Berlin ER - TY - JOUR A1 - Schütt, Christine T1 - Identification of differentially expressed genes JF - Process design for natural scientists: an agile model-driven approach N2 - With the jABC it is possible to realize workflows for numerous questions in different fields. The goal of this project was to create a workflow for the identification of differentially expressed genes. This is of special interest in biology, for it gives the opportunity to get a better insight in cellular changes due to exogenous stress, diseases and so on. With the knowledge that can be derived from the differentially expressed genes in diseased tissues, it becomes possible to find new targets for treatment. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 127 EP - 139 PB - Springer CY - Berlin ER - TY - JOUR A1 - Kuntzsch, Christian T1 - Visualization of data transfer paths JF - Process design for natural scientists: an agile model-driven approach N2 - A workflow for visualizing server connections using the Google Maps API was built in the jABC. It makes use of three basic services: An XML-based IP address geolocation web service, a command line tool and the Static Maps API. The result of the workflow is an URL leading to an image file of a map, showing server connections between a client and a target host. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 140 EP - 148 PB - Springer CY - Berlin ER - TY - JOUR A1 - Teske, Daniel T1 - Geocoder accuracy ranking JF - Process design for natural scientists: an agile model-driven approach N2 - Finding an address on a map is sometimes tricky: the chosen map application may be unfamiliar with the enclosed region. There are several geocoders on the market, they have different databases and algorithms to compute the query. Consequently, the geocoding results differ in their quality. Fortunately the geocoders provide a rich set of metadata. The workflow described in this paper compares this metadata with the aim to find out which geocoder is offering the best-fitting coordinate for a given address. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 161 EP - 174 PB - Springer CY - Berlin ER - TY - JOUR A1 - Schulze, Gunnar T1 - Workflow for rapid metagenome analysis JF - Process design for natural scientists: an agile model-driven approach N2 - Analyses of metagenomes in life sciences present new opportunities as well as challenges to the scientific community and call for advanced computational methods and workflows. The large amount of data collected from samples via next-generation sequencing (NGS) technologies render manual approaches to sequence comparison and annotation unsuitable. Rather, fast and efficient computational pipelines are needed to provide comprehensive statistics and summaries and enable the researcher to choose appropriate tools for more specific analyses. The workflow presented here builds upon previous pipelines designed for automated clustering and annotation of raw sequence reads obtained from next-generation sequencing technologies such as 454 and Illumina. Employing specialized algorithms, the sequence reads are processed at three different levels. First, raw reads are clustered at high similarity cutoff to yield clusters which can be exported as multifasta files for further analyses. Independently, open reading frames (ORFs) are predicted from raw reads and clustered at two strictness levels to yield sets of non-redundant sequences and ORF families. Furthermore, single ORFs are annotated by performing searches against the Pfam database Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 88 EP - 100 PB - Springer CY - Berlin ER - TY - JOUR A1 - Sens, Henriette T1 - Web-Based map generalization tools put to the test: a jABC workflow JF - Process Design for Natural Scientists: an agile model-driven approach N2 - Geometric generalization is a fundamental concept in the digital mapping process. An increasing amount of spatial data is provided on the web as well as a range of tools to process it. This jABC workflow is used for the automatic testing of web-based generalization services like mapshaper.org by executing its functionality, overlaying both datasets before and after the transformation and displaying them visually in a .tif file. Mostly Web Services and command line tools are used to build an environment where ESRI shapefiles can be uploaded, processed through a chosen generalization service and finally visualized in Irfanview. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 175 EP - 185 PB - Springer CY - Berlin ER - TY - JOUR A1 - Noack, Franziska T1 - CREADED: Colored-Relief application for digital elevation data JF - Process design for natural scientists: an agile model-driven approach N2 - In the geoinformatics field, remote sensing data is often used for analyzing the characteristics of the current investigation area. This includes DEMs, which are simple raster grids containing grey scales representing the respective elevation values. The project CREADED that is presented in this paper aims at making these monochrome raster images more significant and more intuitively interpretable. For this purpose, an executable interactive model for creating a colored and relief-shaded Digital Elevation Model (DEM) has been designed using the jABC framework. The process is based on standard jABC-SIBs and SIBs that provide specific GIS functions, which are available as Web services, command line tools and scripts. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 186 EP - 199 PB - Springer CY - Berlin ER - TY - JOUR A1 - Respondek, Tobias T1 - A workflow for computing potential areas for wind turbines JF - Process design for natural scientists: an agile model-driven approach N2 - This paper describes the implementation of a workflow model for service-oriented computing of potential areas for wind turbines in jABC. By implementing a re-executable model the manual effort of a multi-criteria site analysis can be reduced. The aim is to determine the shift of typical geoprocessing tools of geographic information systems (GIS) from the desktop to the web. The analysis is based on a vector data set and mainly uses web services of the “Center for Spatial Information Science and Systems” (CSISS). This paper discusses effort, benefits and problems associated with the use of the web services. Y1 - 2014 SN - 978-3-662-45005-5 IS - 500 SP - 200 EP - 215 PB - Springer CY - Berlin ER - TY - JOUR A1 - Scheele, Lasse T1 - Location analysis for placing artificial reefs JF - Process design for natural scientists: an agile model-driven approach N2 - Location analyses are among the most common tasks while working with spatial data and geographic information systems. Automating the most frequently used procedures is therefore an important aspect of improving their usability. In this context, this project aims to design and implement a workflow, providing some basic tools for a location analysis. For the implementation with jABC, the workflow was applied to the problem of finding a suitable location for placing an artificial reef. For this analysis three parameters (bathymetry, slope and grain size of the ground material) were taken into account, processed, and visualized with the The Generic Mapping Tools (GMT), which were integrated into the workflow as jETI-SIBs. The implemented workflow thereby showed that the approach to combine jABC with GMT resulted in an user-centric yet user-friendly tool with high-quality cartographic outputs. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 216 EP - 228 PB - Springer CY - Berlin ER - TY - JOUR A1 - Holler, Robin T1 - GraffDok - a graffiti documentation application JF - Process design for natural scientists: an agile model-driven approach N2 - GraffDok is an application helping to maintain an overview over sprayed images somewhere in a city. At the time of writing it aims at vandalism rather than at beautiful photographic graffiti in an underpass. Looking at hundreds of tags and scribbles on monuments, house walls, etc. it would be interesting to not only record them in writing but even make them accessible electronically, including images. GraffDok’s workflow is simple and only requires an EXIF-GPS-tagged photograph of a graffito. It automatically determines its location by using reverse geocoding with the given GPS-coordinates and the Gisgraphy WebService. While asking the user for some more meta data, GraffDok analyses the image in parallel with this and tries to detect fore- and background – before extracting the drawing lines and make them stand alone. The command line based tool ImageMagick is used here as well as for accessing EXIF data. Any meta data is written to csv-files, which will stay easily accessible and can be integrated in TeX-files as well. The latter ones are converted to PDF at the end of the workflow, containing a table about all graffiti and a summary for each – including the generated characteristic graffiti pattern image. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 239 EP - 251 PB - Springer CY - Berlin ER -