TY - JOUR A1 - Riaño-Pachón, Diego Mauricio A1 - Kleessen, Sabrina A1 - Neigenfind, Jost A1 - Durek, Pawel A1 - Weber, Elke A1 - Engelsberger, Wolfgang R. A1 - Walther, Dirk A1 - Selbig, Joachim A1 - Schulze, Waltraud X. A1 - Kersten, Birgit T1 - Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana JF - BMC Genomics N2 - Background: Protein phosphorylation is an important post-translational modification influencing many aspects of dynamic cellular behavior. Site-specific phosphorylation of amino acid residues serine, threonine, and tyrosine can have profound effects on protein structure, activity, stability, and interaction with other biomolecules. Phosphorylation sites can be affected in diverse ways in members of any species, one such way is through single nucleotide polymorphisms (SNPs). The availability of large numbers of experimentally identified phosphorylation sites, and of natural variation datasets in Arabidopsis thaliana prompted us to analyze the effect of non-synonymous SNPs (nsSNPs) onto phosphorylation sites. Results: From the analyses of 7,178 experimentally identified phosphorylation sites we found that: (i) Proteins with multiple phosphorylation sites occur more often than expected by chance. (ii) Phosphorylation hotspots show a preference to be located outside conserved domains. (iii) nsSNPs affected experimental phosphorylation sites as much as the corresponding non-phosphorylated amino acid residues. (iv) Losses of experimental phosphorylation sites by nsSNPs were identified in 86 A. thaliana proteins, among them receptor proteins were overrepresented. These results were confirmed by similar analyses of predicted phosphorylation sites in A. thaliana. In addition, predicted threonine phosphorylation sites showed a significant enrichment of nsSNPs towards asparagines and a significant depletion of the synonymous substitution. Proteins in which predicted phosphorylation sites were affected by nsSNPs (loss and gain), were determined to be mainly receptor proteins, stress response proteins and proteins involved in nucleotide and protein binding. Proteins involved in metabolism, catalytic activity and biosynthesis were less affected. Conclusions: We analyzed more than 7,100 experimentally identified phosphorylation sites in almost 4,300 protein-coding loci in silico, thus constituting the largest phosphoproteomics dataset for A. thaliana available to date. Our findings suggest a relatively high variability in the presence or absence of phosphorylation sites between different natural accessions in receptor and other proteins involved in signal transduction. Elucidating the effect of phosphorylation sites affected by nsSNPs on adaptive responses represents an exciting research goal for the future. KW - Gene Ontology KW - Phosphorylation Site KW - phosphorylated amino acid KW - slim term KW - single nucleotide polymorphism mapping Y1 - 2010 U6 - https://doi.org/10.1186/1471-2164-11-411 SN - 1471-2164 VL - 11 PB - Biomed Central CY - London ER - TY - JOUR A1 - Mooij, Wolf M. A1 - Trolle, Dennis A1 - Jeppesen, Erik A1 - Arhonditsis, George B. A1 - Belolipetsky, Pavel V. A1 - Chitamwebwa, Deonatus B. R. A1 - Degermendzhy, Andrey G. A1 - DeAngelis, Donald L. A1 - Domis, Lisette Nicole de Senerpont A1 - Downing, Andrea S. A1 - Elliott, J. Alex A1 - Fragoso Jr, Carlos Ruberto A1 - Gaedke, Ursula A1 - Genova, Svetlana N. A1 - Gulati, Ramesh D. A1 - Håkanson, Lars A1 - Hamilton, David P. A1 - Hipsey, Matthew R. A1 - ‘t Hoen, Jochem A1 - Hülsmann, Stephan A1 - Los, F. Hans A1 - Makler-Pick, Vardit A1 - Petzoldt, Thomas A1 - Prokopkin, Igor G. A1 - Rinke, Karsten A1 - Schep, Sebastiaan A. A1 - Tominaga, Koji A1 - Van Dam, Anne A. A1 - Van Nes, Egbert H. A1 - Wells, Scott A. A1 - Janse, Jan H. T1 - Challenges and opportunities for integrating lake ecosystem modelling approaches JF - Aquatic ecology N2 - A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and traitbased models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models. KW - aquatic KW - food web dynamics KW - plankton KW - nutrients KW - spatial KW - lake KW - freshwater KW - marine KW - community KW - population KW - hydrology KW - eutrophication KW - global change KW - climate warming KW - fisheries KW - biodiversity KW - management KW - mitigation KW - adaptive processes KW - non-linear dynamics KW - analysis KW - bifurcation KW - understanding KW - prediction KW - model limitations KW - model integration Y1 - 2010 U6 - https://doi.org/10.1007/s10452-010-9339-3 SN - 1573-5125 SN - 1386-2588 VL - 44 SP - 633 EP - 667 PB - Springer Science + Business Media B.V. CY - Dordrecht ER - TY - GEN A1 - Mooij, Wolf M. A1 - Trolle, Dennis A1 - Jeppesen, Erik A1 - Arhonditsis, George B. A1 - Belolipetsky, Pavel V. A1 - Chitamwebwa, Deonatus B. R. A1 - Degermendzhy, Andrey G. A1 - DeAngelis, Donald L. A1 - Domis, Lisette Nicole de Senerpont A1 - Downing, Andrea S. A1 - Elliott, J. Alex A1 - Fragoso Jr., Carlos Ruberto A1 - Gaedke, Ursula A1 - Genova, Svetlana N. A1 - Gulati, Ramesh D. A1 - Håkanson, Lars A1 - Hamilton, David P. A1 - Hipsey, Matthew R. A1 - ‘t Hoen, Jochem A1 - Hülsmann, Stephan A1 - Los, F. Hans A1 - Makler-Pick, Vardit A1 - Petzoldt, Thomas A1 - Prokopkin, Igor G. A1 - Rinke, Karsten A1 - Schep, Sebastiaan A. A1 - Tominaga, Koji A1 - Van Dam, Anne A. A1 - Van Nes, Egbert H. A1 - Wells, Scott A. A1 - Janse, Jan H. T1 - Challenges and opportunities for integrating lake ecosystem modelling approaches T2 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and traitbased models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1326 KW - aquatic KW - food web dynamics KW - plankton KW - nutrients KW - spatial KW - lake KW - freshwater KW - marine KW - community KW - population KW - hydrology KW - eutrophication KW - global change KW - climate warming KW - fisheries KW - biodiversity KW - management KW - mitigation KW - adaptive processes KW - non-linear dynamics KW - analysis KW - bifurcation KW - understanding KW - prediction KW - model limitations KW - model integration Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-429839 SN - 1866-8372 IS - 1326 ER - TY - BOOK A1 - Arndt, Katja Maren T1 - Proteine zur Krebstherapie - Zielen, Steuern, Hemmen : Antrittsvorlesung 2010-12-08 N2 - Biotechnologie, Biologie, Protein Engineering, Therapeutische Peptide, Protein Design, Selektionssysteme / biotechnology, biology, protein enginieering, therapeutic peptides, protein design, selection systems Y1 - 2010 UR - http://info.ub.uni-potsdam.de/multimedia/show_multimediafile.php?mediafile_id=239 PB - Univ.-Bibl. CY - Potsdam ER - TY - THES A1 - Nikiforova, Victoria T1 - Processing of metabolic information through biological networks Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Neuendorf, Antje T1 - Studien zur Reinigung, Monomerisierung und Aggragation von Huntingtin : Exon 1 Proteinkonstrukten Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Maitrejean, Marie T1 - Proteostasis of the tonoplast : synthesis, sorting and turnover of the potassum channel AtTPK1 Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Knorr, Roland L. T1 - Giant vesicles - influence of phase state, composition and electric pulses Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Matthes, Annemarie T1 - Ein neues Verfahren für die Identifikation DNA-bindender Proteine in Chloroplasten Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Ketmaier, Valerio T1 - Molecular biogeography of southern European species : Darstellung der publizierten Forschungsergebnissen unter Berücksichtigung des allgemeinen Kenntnisstandes und Einordnung in den wissenschaftlichen Gesamtzusammenhang Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Ganzert, Lars T1 - Bacterial diverity and adaption in permafrost-affected soils of maritime Antartica and Northeast Greenland Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Mathieu-Rivet, Elodie A1 - Gévaudant, Frédéric A1 - Sicard, Adrien A1 - Salar, Sophie A1 - Do, Phuc Thi A1 - Mouras, Armand A1 - Fernie, Alisdair R. A1 - Gibon, Yves A1 - Rothan, Christophe A1 - Chevalier, Christian A1 - Hernould, Michel T1 - Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo- reduplication for fruit growth in tomato Y1 - 2010 SN - 1365-313X ER - TY - JOUR A1 - Graf, Philipp A1 - Dolzblasz, Alicja A1 - Würschum, Tobias A1 - Lenhard, Michael A1 - Pfreundt, Ulrike A1 - Laux, Thomas T1 - MGOUN1 encodes an Arabidopsis type Ib DNA topoisomerase required in stem cell regulation and to maintain develpmentally regulated gene silencing Y1 - 2010 SN - 1040-4651 ER - TY - JOUR A1 - Jing, Runchun A1 - Vershinin, Alexander A1 - Grzebyta, Jacek A1 - Shaw, Paul A1 - Smïykal, Petr A1 - Marshall, David A1 - Ambrose, Michael J. A1 - Ellis, Noel A1 - Flavell, Andrew J. T1 - The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis Y1 - 2010 UR - http://www.biomedcentral.com/1471-2148/10/44 U6 - https://doi.org/10.1186/1471-2148-10-44 SN - 1471-2148 ER - TY - JOUR A1 - Lohmann, Daniel A1 - Stacey, Nicola A1 - Breuninger, Holger A1 - Jikumaru, Yusuke A1 - Müller, Dörte A1 - Sicard, Adrien A1 - Leyser, Ottoline A1 - Yamaguchi, Shinjiro A1 - Lenhard, Michael T1 - SLOW MOTION is required for within-plant auxin homeostasis and normal timing of lateral organ initiation at the shoot meristem in Arabidopsis Y1 - 2010 SN - 1040-4651 ER - TY - JOUR A1 - Rosa, Sabrina F. A1 - Powell, Anahid E. A1 - Rosengarten, Rafael D. A1 - Nicotra, Matthew L. A1 - Moreno, Maria A. A1 - Grimwood, Jane A1 - Lakkis, Fadi G. A1 - Dellaporta, Stephen L. A1 - Buss, Leo W. T1 - Hydractinia allodeterminant alr1 resides in an immunoglobulin superfamily-like gene complex Y1 - 2010 SN - 0960-9822 ER - TY - JOUR A1 - Gast, Klaus T1 - Dynamic and static light scattering Y1 - 2010 SN - 978-0-470-34341-8 ER - TY - JOUR A1 - Breuninger, Holger A1 - Lenhard, Michael T1 - Control of tissue and organ growth in plants Y1 - 2010 SN - 0070-2153 ER - TY - JOUR A1 - Eriksson, Sven A1 - Stransfeld, Lena A1 - Adamski, Nikolai Maria A1 - Breuninger, Holger A1 - Lenhard, Michael T1 - KLUH/CYP78A5-dependent growth signaling coordinates floral organ growth in Arabidopsis Y1 - 2010 SN - 0960-9822 ER - TY - JOUR A1 - Zhang, Fuzhong Z. A1 - Timm, Katharina A. A1 - Arndt, Katja Maren A1 - Woolley, G. Andrew T1 - Photocontrol of Coiled-Coil Proteins in Living Cells N2 - Light switching of the activity of a coiled-coil protein, the AP-1 transcription factor, in living cells was made possible by the introduction of a designed azobenzene-cross-linked dominant negative peptide, XAFosW (red and yellow in the picture). In the dark, XAFosW showed decreased helical content and decreased affinity for target Jun proteins (green); irradiation at 365 nm enhanced helicity and target affinity. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/26737/ U6 - https://doi.org/10.1002/anie.201000909 SN - 1433-7851 ER - TY - THES A1 - Santos, Francisca dos T1 - Towards a mechanistic understanding of species and community responses to climate change : the role of disturbances interaction Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Christian, Nils T1 - Genome-scale metabolic networks: Quality improvement and habitat interaction analysis Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Schwarte, Sandra T1 - Genetic variation of photosynthesis and starch metabolism genes in Arabidopsis thaliana Y1 - 2010 CY - Potsdam ER - TY - THES A1 - von Deuster, Carola T1 - Simulations on several scales: Studies on protein-ligand binding kinetics and on the antimicrobial peptide NK-2 Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Petersen, Kerstin T1 - Genexpression in Plastiden: Funktionen plastidärer Introns und Produktion Zellwand-abbauender Enzyme Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Pieritz, Janin T1 - Transport von Proteinen und mikro RNAs im Pholoem von Brassica napus und Arabidopsis thaliana Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Hische, Manuela A1 - Luis-Dominguez, Olga A1 - Pfeiffer, Andreas F. H. A1 - Schwarz, Peter E. A1 - Selbig, Joachim A1 - Spranger, Joachim T1 - Decision trees as a simple-to-use and reliable tool to identify individuals with impaired glucose metabolism or type 2 diabetes mellitus N2 - Objective: The prevalence of unknown impaired fasting glucose (IFG), impaired glucose tolerance (IGT), or type 2 diabetes mellitus (T2DM) is high. Numerous studies demonstrated that IFG, IGT, or T2DM are associated with increased cardiovascular risk, therefore an improved identification strategy would be desirable. The objective of this study was to create a simple and reliable tool to identify individuals with impaired glucose metabolism (IGM). Design and methods: A cohort of 1737 individuals (1055 controls, 682 with previously unknown IGM) was screened by 75 g oral glucose tolerance test (OGTT). Supervised machine learning was used to automatically generate decision trees to identify individuals with IGM. To evaluate the accuracy of identification, a tenfold cross-validation was performed. Resulting trees were subsequently re-evaluated in a second, independent cohort of 1998 individuals (1253 controls, 745 unknown IGM). Results: A clinical decision tree included age and systolic blood pressure (sensitivity 89.3%, specificity 37.4%, and positive predictive value (PPV) 48.0%), while a tree based on clinical and laboratory data included fasting glucose and systolic blood pressure (sensitivity 89.7%, specificity 54.6%, and PPV 56.2%). The inclusion of additional parameters did not improve test quality. The external validation approach confirmed the presented decision trees. Conclusion: We proposed a simple tool to identify individuals with existing IGM. From a practical perspective, fasting blood glucose and blood pressure measurements should be regularly measured in all individuals presenting in outpatient clinics. An OGTT appears to be useful only if the subjects are older than 48 years or show abnormalities in fasting glucose or blood pressure. Y1 - 2010 UR - http://www.eje-online.org/ U6 - https://doi.org/10.1530/Eje-10-0649 SN - 0804-4643 ER - TY - JOUR A1 - Hermanussen, Michael A1 - Godina, Elena A1 - Ruehli, Frank J. A1 - Blaha, Pawel A1 - Boldsen, Jesper L. A1 - van Buuren, Stef A1 - MacIntyre, Matthew A1 - Aßmann, Christian A1 - Ghosh, Arunava A1 - de Stefano, Gian Fra nco A1 - Sonkin, Valentin D. A1 - Tresguerres Hernández, Jesús Ángel Fernández A1 - Meigen, Christof A1 - Scheffler, Christiane A1 - Geiger, Cherie L. A1 - Lieberman, Leslie Sue T1 - Growth variation, final height and secular trend : proceedings of the 17th Aschauer Soiree, 7th November 2009 N2 - Growth and body height have always been topics interesting to the public. In particular, the stupendous increase of some 15-19 cm in final adult height during the last 150 years in most European countries (the "secular trend"), the concomitant changes in body and head proportions, the tendency towards early onset of sexual maturation, the changes in the age when final height is being reached, and the very recent trend in body mass index, have generated much scientific literature. The marked plasticity of growth in height and weight over time causes problems. Child growth references differ between nations, they tend to quickly become out of date, and raise a number of questions regarding fitting methods, effects caused by selective drop-out, etc. New findings contradict common beliefs about the primary importance of nutritional and health related factors for secular changes in growth. There appears to be a broad age span from mid-childhood to early adolescence that is characterised by a peculiar insusceptibility. Environmental factors that are known to influence growth during this age span appear to have only little or no impact on final height. Major re- arrangements in height occur at an age when puberty has almost been completed and final height has almost been reached, implying that factors, which drive the secular trend in height, are limited to early childhood and late adolescence. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/0018442X U6 - https://doi.org/10.1016/j.jchb.2010.06.001 SN - 0018-442X ER - TY - JOUR A1 - Hemp, Claudia A1 - Voje, Kjetil Lysne A1 - Heller, Klaus-Gerhard A1 - Warchalowska-Sliwa, Elzbieta A1 - Hemp, Andreas T1 - A new genus of African Acrometopini (Tettigoniidae: Phaneropterinae) based on morphology, chromosomes, acoustics, distribution, and molecular data, and the description of a new species N2 - A new genus, Altihoratosphaga, is erected for species formerly assigned to Horatosphaga Schaum, 1853, and a new species is described. Four species are included in Altihoratosphaga: Altihoratosphaga nomima (Karsch, 1896), Altihoratosphaga montivaga (Sjostedt, 1909), Altihoratosphaga nou (Hemp, 2007) and Altihoratosphaga hanangensis sp. nov. All four species are restricted to Tanzanian localities, and, except for A. nomima, for which no ecological data are available, are confined to montane forest habitats. Data on ecology, acoustics, chromosomes, and molecular relationships are provided, as well as a key to Altihoratosphaga species. The present-day distribution of Altihoratosphaga species suggests former migration events at times when wetter and colder climatic fluctuations favoured connections between montane forest communities, which today are isolated, enabling flightless taxa such as Altihoratosphaga and Monticolaria to spread. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0024-4082 U6 - https://doi.org/10.1111/j.1096-3642.2009.00542.x SN - 0024-4082 ER - TY - JOUR A1 - Hemp, Claudia A1 - Kehl, Siegfried A1 - Heller, Klaus-Gerhard A1 - Waegele, Johann Wolfgang A1 - Hemp, Andreas T1 - A new genus of African Karniellina (Orthoptera, Tettigoniidae, Conocephalinae, Conocephalini) : integrating morphological, molecular and bioacoustical data N2 - Melanoscirtes gen.n. is established within Karniellina. The members of this subtribe are small conocephaline bush crickets, confined to Africa. Melanoscirtes is erected on Phlesirtes kibonotensis, a species restricted to forest clearings and forest edge in the submontane and montane zones of Mt. Kilimanjaro. A subspecies, M. kibonotensis uguenoensis, is described from the North Pare mountains, a mountain range of the Eastern Arc adjacent to Mt. Kilimanjaro. Further species of Melanoscirtes occur on other mountain ranges of the northern branch of the Eastern Arc mountains of northern Tanzania and southern Kenya. The South Pare mountains harbour M. shengenae; the West Usambaras, M. usambarensis, and the Taita Hills, M. taitensis. All species and subspecies of Melanoscirtes exhibit a similar morphology and occupy analogous habitats on the respective mountains. The song patterns for all species found within this genus are very similar, and this, together with evidence from molecular data, suggests that allopatric speciation is the reason for the biogeographic pattern found in this genus. A key for the subspecies and species of Melanoscirtes is provided. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0307-6970 U6 - https://doi.org/10.1111/j.1365-3113.2010.00528.x SN - 0307-6970 ER - TY - JOUR A1 - Hemp, Claudia A1 - Heller, Klaus-Gerhard A1 - Warchalowska-Sliwa, Elzbieta A1 - Hemp, Andreas T1 - A new genus and species of African Phaneropterinae (Orthoptera: Tettigoniidae), with data on its ecology, bioacoustics and chromosomes N2 - A new genus is proposed for a new East African Phaneropterinae species, Lunidia viridis, occurring on Mt. Kilimanjaro, Tanzania. Based on 33 records, notes on distribution and habitat are given, as well as acoustical data provided. Climate and vegetation parameters obtained along several transects on Mt. Kilimanjaro were evaluated describing the ecological niche of the new species. This interdisciplinary approach allows not only a profound characterisation of the ecological demands of the new genus but also predictions of the potential distribution area, which is tested for the first time for an African bush cricket species. Lunidia viridis n. gen. n. sp. occurs within humid and perhumid forests and Chagga home gardens, avoiding subhumid conditions on the mountain. It is found from 1,330 m upwards on the southern slopes, whereas the same ecological conditions are expressed from 1,930 m upwards on the drier northern slopes. Lunidia viridis has an unusually complex and variable song, which is described from field and laboratory recordings. The FISH technique for characterizing chromosomes is applied for the first time for an African species; L. viridis exhibits a karyotype typical for most Tettigoniidae. Y1 - 2010 UR - http://www.springerlink.com/content/1439-6092 U6 - https://doi.org/10.1007/s13127-010-0013-3 SN - 1439-6092 ER - TY - JOUR A1 - Hemp, Claudia A1 - Heller, Klaus-Gerhard A1 - Kehl, Siegfried A1 - Warchalowska-Sliwa, Elzbieta A1 - Waegele, Johann Wolfgang A1 - Hemp, Andreas T1 - The Phlesirtes complex (Orthoptera, Tettigoniidae, Conocephalinae, Conocephalini) reviewed : integrating morphological, molecular, chromosomal and bioacoustic data N2 - The tettigoniid genus Phlesirtes Bolivar and its allies are reviewed. Morphological, ecological and molecular data prompt the erection of the new genus Chortoscirtes gen.n. with type species Xiphidion meruense Sjostedt. The genera Phlesirtes, Chortoscirtes, Karniella and Naskreckiella are characterized by morphological characters supported by molecular, acoustic, ecological and chromosomal data. Four species, Chortoscirtes pseudomeruensis sp.n., C. masaicus sp.n., C. puguensis sp.n. and C. serengeti sp.n., are described from localities in northern and coastal Tanzania and one Karniella, K. crassicerca sp.n., is described from Uganda. The following comb n. are proposed: Phlesirtes kibonotensis (Sjostedt) and Phlesirtes kilimandjaricus (Sjostedt). Subtribal status is proposed for the four investigated African genera. A key to the Chortoscirtes species is provided. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0307-6970 U6 - https://doi.org/10.1111/j.1365-3113.2009.00512.x SN - 0307-6970 ER - TY - JOUR A1 - Hejazi, Mahdi A1 - Fettke, Jörg A1 - Koetting, Oliver A1 - Zeeman, Samuel C. A1 - Steup, Martin T1 - The Laforin-like dual-specificity phosphatase SEX4 from Arabidopsis hydrolyzes both C6-and C3-phosphate esters introduced by starch-related dikinases and thereby affects phase transition of alpha-glucans N2 - The biochemical function of the Laforin-like dual-specific phosphatase AtSEX4 (EC 3.1.3.48) has been studied. Crystalline maltodextrins representing the A- or the B-type allomorph were prephosphorylated using recombinant glucan, water dikinase (StGWD) or the successive action of both plastidial dikinases (StGWD and AtPWD). AtSEX4 hydrolyzed carbon 6-phosphate esters from both the prephosphorylated A- and B-type allomorphs and the kinetic constants are similar. The phosphatase also acted on prelabeled carbon-3 esters from both crystalline maltodextrins. Similarly, native starch granules prelabeled in either the carbon-6 or carbon-3 position were also dephosphorylated by AtSEX4. The phosphatase did also hydrolyze phosphate esters of both prephosphorylated maltodextrins when the (phospho)glucans had been solubilized by heat treatment. Submillimolar concentrations of nonphosphorylated maltodextrins inhibited AtSEX4 provided they possessed a minimum of length and had been solubilized. As opposed to the soluble phosphomaltodextrins, the AtSEX4- mediated dephosphorylation of the insoluble substrates was incomplete and at least 50% of the phosphate esters were retained in the pelletable (phospho) glucans. The partial dephosphorylation of the insoluble glucans also strongly reduced the release of nonphosphorylated chains into solution. Presumably, this effect reflects fast structural changes that following dephosphorylation occur near the surface of the maltodextrin particles. A model is proposed defining distinct stages within the phosphorylation/dephosphorylation-dependent transition of alpha-glucans from the insoluble to the soluble state. Y1 - 2010 UR - http://www.plantphysiol.org/ U6 - https://doi.org/10.1104/pp.109.149914 SN - 0032-0889 ER - TY - JOUR A1 - Heiler, Katharina C. M. A1 - Nahavandi, Nahid A1 - Albrecht, Christian T1 - A new invasion into an Ancient lake : the invasion history of the dreissenid mussel Mytilopsis leucophaeata (Conrad, 1831) and its first record in the Caspian sea Y1 - 2010 UR - http://www.bioone.org/loi/mala U6 - https://doi.org/10.4002/040.053.0112 SN - 0076-2997 ER - TY - JOUR A1 - Hector, Andy A1 - Hautier, Yann A1 - Saner, Philippe A1 - Wacker, Lukas A1 - Bagchi, Robert A1 - Joshi, Jasmin Radha A1 - Scherer-Lorenzen, Michael A1 - Spehn, Eva M. A1 - Bazeley-White, Ellen A1 - Weilenmann, Markus A1 - Caldeira, Maria da Conceição Brálio de Brito A1 - Dimitrakopoulos, Panayiotis G. A1 - Finn, John A. A1 - Huss-Danell, Kerstin A1 - Jumpponen, Ari A1 - Mulder, Christa P. H. A1 - Palmborg, Cecilia A1 - Pereira, J. S. A1 - Siamantziouras, Akis S. D. A1 - Terry, Andrew C. A1 - Troumbis, Andreas Y. A1 - Schmid, Bernhard A1 - Loreau, Michel T1 - General stabilizing effects of plant diversity on grassland productivity through population asynchrony and overyielding N2 - Insurance effects of biodiversity can stabilize the functioning of multispecies ecosystems against environmental variability when differential species' responses lead to asynchronous population dynamics. When responses are not perfectly positively correlated, declines in some populations are compensated by increases in others, smoothing variability in ecosystem productivity. This variance reduction effect of biodiversity is analogous to the risk- spreading benefits of diverse investment portfolios in financial markets. We use data from the BIODEPTH network of grassland biodiversity experiments to perform a general test for stabilizing effects of plant diversity on the temporal variability of individual species, functional groups, and aggregate communities. We tested three potential mechanisms: reduction of temporal variability through population asynchrony; enhancement of long-term average performance through positive selection effects; and increases in the temporal mean due to overyielding. Our results support a stabilizing effect of diversity on the temporal variability of grassland aboveground annual net primary production through two mechanisms. Two-species communities with greater population asynchrony were more stable in their average production over time due to compensatory fluctuations. Overyielding also stabilized productivity by increasing levels of average biomass production relative to temporal variability. However, there was no evidence for a performance-enhancing effect on the temporal mean through positive selection effects. In combination with previous work, our results suggest that stabilizing effects of diversity on community productivity through population asynchrony and overyielding appear to be general in grassland ecosystems. Y1 - 2010 UR - http://esapubs.org/esapubs/journals/ecology.htm SN - 0012-9658 ER - TY - JOUR A1 - Hartwich, Melanie A1 - Wacker, Alexander A1 - Weithoff, Guntram T1 - Changes in the competitive abilities of two rotifers feeding on mixotrophic flagellates N2 - The competitive abilities of two rotifer species (Elosa worallii, Cephalodella sp.) were influenced by the mode of carbon acquisition of the osmo-mixotrophic flagellate Chlamydomonas acidophila due to changes in cell biochemistry. Y1 - 2010 UR - http://plankt.oxfordjournals.org/ U6 - https://doi.org/10.1093/plankt/fbq081 SN - 0142-7873 ER - TY - JOUR A1 - Grießner, Matthias A1 - Hartig, Dave A1 - Christmann, Alexander A1 - Ehrentreich-Förster, Eva A1 - Warsinke, Axel A1 - Bier, Frank Fabian T1 - Surface regeneration of microfluidic microarray printheads through plasma techniques N2 - This work describes a method for surface regeneration of microfluidic microarray printheads through plasma techniques. Modification procedures were chosen in a way to obtain high reproducibility with a minimum of time consumption. The idea behind this is a complete regeneration of a microarray printhead before or after usage to achieve best printing results over a typical print job. A sequence of low-pressure oxygen-plasma and plasma polymerization with hexamethyldisiloxane (HMDSO) was used to regenerate printheads. Proof of the concept is given through quality control performed with a spotter implemented CCD camera, contact angle measurements and a typical hybridization experiment. Stable printing results were obtained over 3000 activations showing that the presented method is suitable for treatment of microarray printheads. Y1 - 2010 UR - http://iopscience.iop.org/0960-1317/ U6 - https://doi.org/10.1088/0960-1317/20/3/037002 SN - 0960-1317 ER - TY - JOUR A1 - Gisin, Jonathan A1 - Mueller, Alexandra A1 - Pfaender, Yvonne A1 - Leimkühler, Silke A1 - Narberhaus, Franz A1 - Masepohl, Bernd T1 - A Rhodobacter capsulatus member of a universal permease family imports molybdate and other oxyanions N2 - Molybdenum (Mo) is an important trace element that is toxic at high concentrations. To resolve the mechanisms underlying Mo toxicity, Rhodobacter capsulatus mutants tolerant to high Mo concentrations were isolated by random transposon Tn5 mutagenesis. The insertion sites of six independent isolates mapped within the same gene predicted to code for a permease of unknown function located in the cytoplasmic membrane. During growth under Mo-replete conditions, the wild-type strain accumulated considerably more Mo than the permease mutant. For mutants defective for the permease, the high-affinity molybdate importer ModABC, or both transporters, in vivo Mo-dependent nitrogenase (Mo-nitrogenase) activities at different Mo concentrations suggested that ModABC and the permease import molybdate in nanomolar and micromolar ranges, respectively. Like the permease mutants, a mutant defective for ATP sulfurylase tolerated high Mo concentrations, suggesting that ATP sulfurylase is the main target of Mo inhibition in R. capsulatus. Sulfate-dependent growth of a double mutant defective for the permease and the high-affinity sulfate importer CysTWA was reduced compared to those of the single mutants, implying that the permease plays an important role in sulfate uptake. In addition, permease mutants tolerated higher tungstate and vanadate concentrations than the wild type, suggesting that the permease acts as a general oxyanion importer. We propose to call this permease PerO (for oxyanion permease). It is the first reported bacterial molybdate transporter outside the ABC transporter family. Y1 - 2010 UR - http://jb.asm.org/ U6 - https://doi.org/10.1128/Jb.00742-10 SN - 0021-9193 ER - TY - JOUR A1 - Geissler, Katja A1 - Gzik, Axel T1 - Germination ecology of three endangered river corridor plants in relation to their preferred occurrence N2 - As a contribution to conservation, we investigated germination requirements of three perennial, endangered river corridor plants of Central European lowlands coexisting in subcontinental flood meadows, but preferring particular zones of decreasing flooding frequency and duration along the elevational gradient of the banks. It was hypothesized that the species have specific germination requirements to respond successfully to open patch creation depending on their occurrence along the gradient of spring flooding in the field. This study involved controlled experiments and phenological studies. Juncus atratus and Gratiola officinalis, which frequently occupy flooded, naturally disturbed sites, have an absolute light requirement for germination, typical of pioneer species. Summer-dispersed, non-dormant seeds off. atratus did hardly germinate at high temperatures and lacked a gap sensitivity based on temperature fluctuation. Since the temperature amplitude decreases beneath an insulating cover of vegetation or water, seeds seem to be prepared for rapid germination at open, wet, maybe even inundated sites. Late-summer-dispersed seeds of G. officinalis were in a state of conditional primary dormancy. Dormancy could be completely broken by cold-wet stratification, indicating spring germination. Similar to J. atratus, daily temperature fluctuations did not control germination at suitable microsites. In Cnidium dubium that occurs at higher elevated sites, the level of primary dormancy of seeds was sufficient to prevent germination following dispersal, but the level was dependent on the year of harvest. Buried seeds showed an annual dormancy/conditional dormancy cycle. Dormancy was only partially broken by cold- wet stratification. It was completely broken by application of a high concentration of gibberellic acid. C. dubium had no absolute light requirement for germination, but it was stimulated by high light levels and in contrast to the other two species, seeds were stimulated by daily temperature fluctuations. Germination would therefore be maximized by zaps in early spring when the flooding water has receded. Re-entering dormancy in the late spring fails to support that germination occurs immediately after early-summer mowing - an important factor at subcontinental flood meadows. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/03672530 U6 - https://doi.org/10.1016/j.flora.2010.04.008 SN - 0367-2530 ER - TY - JOUR A1 - Geißler, Daniel A1 - Charbonnière, Loïc J. A1 - Ziessel, Raymond F. A1 - Butlin, Nathaniel G. A1 - Löhmannsröben, Hans-Gerd A1 - Hildebrandt, Niko T1 - Quantum dot biosensors for ultrasensitive multiplexed diagnostics N2 - Time- and color-resolved detection of Foerster resonance energy transfer (FRET) from luminescent terbium complexes to different semiconductor quantum dots results in a fivefold multiplexed bioassay with sub-picomolar detection limits for all five bioanalytes (see picture). The detection of up to five biomarkers occurs with a sensitivity that is 40-240-fold higher than one of the best-established single-analyte reference assays. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/26737/ U6 - https://doi.org/10.1002/anie.200906399 SN - 1433-7851 ER - TY - JOUR A1 - Gehmlich, Katja A1 - Hayess, Katrin A1 - Legler, Christof A1 - Haebel, Sophie A1 - van der Ven, Peter F. M. A1 - Ehler, Elisabeth A1 - Fuerst, Dieter O. T1 - Ponsin interacts with Nck adapter proteins : implications for a role in cytoskeletal remodelling during differentiation of skeletal muscle cells N2 - Skeletal muscle differentiation is a complex process: It is characterised by changes in gene expression and protein composition. Simultaneously, a dramatic remodelling of the cytoskeleton and associated cell-matrix contacts, the costameres, occurs. The expression and localisation of the protein ponsin at cell-matrix contacts marks the establishment of costameres. In this report we show that skeletal muscle cells are characterised by a novel ponsin isoform, which contains a large insertion in its carboxy-terminus. This skeletal muscle-specific module binds the adapter proteins Nck1 and Nck2, and increased co-localisation of ponsin with Nck2 is observed at remodelling cell-matrix contacts of differentiating skeletal muscle cells. Since this ponsin insertion can be phosphorylated, it may adjust the interaction affinity with Nck adapter proteins. The novel ponsin isoform and its interaction with Nck1/2 provide exciting insight into the convergence of signalling pathways at the costameres, and its crucial role for skeletal muscle differentiation and re-generation. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/01719335 U6 - https://doi.org/10.1016/j.ejcb.2009.10.019 SN - 0171-9335 ER - TY - JOUR A1 - Garcia-Mata, Carlos A1 - Wang, Jianwen A1 - Gajdanowicz, Pawel A1 - Gonzalez, Wendy A1 - Hills, Adrian A1 - Donald, Naomi A1 - Riedelsberger, Janin A1 - Amtmann, Anna A1 - Dreyer, Ingo A1 - Blatt, Michael R. T1 - A minimal cysteine motif required to activate the SKOR K+ channel of Arabidopsis by the reactive oxygen species H2O2 N2 - Reactive oxygen species (ROS) are essential for development and stress signaling in plants. They contribute to plant defense against pathogens, regulate stomatal transpiration, and influence nutrient uptake and partitioning. Although both Ca2+ and K+ channels of plants are known to be affected, virtually nothing is known of the targets for ROS at a molecular level. Here we report that a single cysteine (Cys) residue within the Kv-like SKOR K+ channel of Arabidopsis thaliana is essential for channel sensitivity to the ROS H2O2. We show that H2O2 rapidly enhanced current amplitude and activation kinetics of heterologously expressed SKOR, and the effects were reversed by the reducing agent dithiothreitol (DTT). Both H2O2 and DTT were active at the outer face of the membrane and current enhancement was strongly dependent on membrane depolarization, consistent with a H2O2-sensitive site on the SKOR protein that is exposed to the outside when the channel is in the open conformation. Cys substitutions identified a single residue, Cys(168) located within the S3 alpha-helix of the voltage sensor complex, to be essential for sensitivity to H2O2. The same Cys residue was a primary determinant for current block by covalent Cys S-methioylation with aqueous methanethiosulfonates. These, and additional data identify Cys168 as a critical target for H2O2, and implicate ROS-mediated control of the K+ channel in regulating mineral nutrient partitioning within the plant. Y1 - 2010 UR - http://www.jbc.org/ U6 - https://doi.org/10.1074/jbc.M110.141176 SN - 0021-9258 ER - TY - JOUR A1 - Gaedke, Ursula A1 - Ruhenstroth-Bauer, Miriam A1 - Wiegand, Ina A1 - Tirok, Katrin A1 - Aberle-Malzahn, Nicole A1 - Breithaupt, Petra A1 - Lengfellner, Kathrin A1 - Wohlers, Julia A1 - Sommer, Ulrich T1 - Biotic interactions may overrule direct climate effects on spring phytoplankton dynamics N2 - To improve our mechanistic understanding and predictive capacities with respect to climate change effects on the spring phytoplankton bloom in temperate marine systems, we used a process-driven dynamical model to disentangle the impact of potentially relevant factors which are often correlated in the field. The model was based on comprehensive indoor mesocosm experiments run at four temperature and three light regimes. It was driven by time-series of water temperature and irradiance, considered edible and less edible phytoplankton separately, and accounted for density- dependent grazing losses. It successfully reproduced the observed dynamics of well edible phytoplankton in the different temperature and light treatments. Four major factors influenced spring phytoplankton dynamics: temperature, light (cloudiness), grazing, and the success of overwintering phyto- and zooplankton providing the starting biomasses for spring growth. Our study predicts that increasing cloudiness as anticipated for warmer winters for the Baltic Sea region will retard phytoplankton net growth and reduce peak heights. Light had a strong direct effect in contrast to temperature. However, edible phytoplankton was indirectly strongly temperature-sensitive via grazing which was already important in early spring at moderately high algal biomasses and counter-intuitively provoked lower and later algal peaks at higher temperatures. Initial phyto- and zooplankton composition and biomass also had a strong effect on spring algal dynamics indicating a memory effect via the broadly under-sampled overwintering plankton community. Unexpectedly, increased initial phytoplankton biomass did not necessarily lead to earlier or higher spring blooms since the effect was counteracted by subsequently enhanced grazing. Increasing temperature will likely exhibit complex indirect effects via changes in overwintering phytoplankton and grazer biomasses and current grazing pressure. Additionally, effects on the phytoplankton composition due to the species-specific susceptibility to grazing are expected. Hence, we need to consider not only direct but also indirect effects, e.g. biotic interactions, when addressing climate change impacts. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=1354-1013 U6 - https://doi.org/10.1111/j.1365-2486.2009.02009.x SN - 1354-1013 ER - TY - JOUR A1 - Frasca, Stefano A1 - von Graberg, Till A1 - Feng, Jiu-Ju A1 - Thomas, Arne A1 - Smarsly, Bernd M. A1 - Weidinger, Inez M. A1 - Scheller, Frieder W. A1 - Hildebrandt, Peter A1 - Wollenberger, Ursula T1 - Mesoporous indium tin oxide as a novel platform for bioelectronics N2 - Stable immobilization and reversible electrochemistry of cytochrome c in a tranparent indium tin oxide film with a well-defined mesoporosity (mpITO) is demonstrated. the transparency and good conductivity, in combination with the large surface area of mpITO, allow the incorporation of a high amount of elelctroactive biomolecules and their electrochemical and spectroscopic investigation. UV/Vis and resonance Raman spectroscopy, in combination with direct protein voltammetry are employed for the characterization of cytochrome c immobilized in the mpITO and reveal no perturbant of the structural of the integrity of the redox protein. The potential of this modified material as a biosensor detection of superoxide anions is also demonstrated. Y1 - 2010 UR - http://www3.interscience.wiley.com/journal/122208635/home U6 - https://doi.org/10.1002/cctc.201000047 SN - 1867-3880 ER - TY - JOUR A1 - Franke-Gromberg, Christine A1 - Schüler, Grit A1 - Hermanussen, Michael A1 - Scheffler, Christiane T1 - Digital 2D-photogrammetry and direct anthropometry : a comparing study on test accomplishment and measurement data N2 - The aim of this methodological anthropometric study was to compare direct anthropometry and digital two- dimensional photogrammetry in 18 male and 27 female subjects, aged 24 to 65 years, from Potsdam, Germany. In view of the rising interest in reliable biometric kephalofacial data, we focussed on head and face measurements. Out of 34 classic facial anatomical landmarks, 27 landmarks were investigated both by direct anthropometry and 2D-photogrammetry; 7 landmarks could not be localized by 2D-photogrammetry. Twenty-six kephalofacial distances were analysed both by direct anthropometry and digital 2D-photogrammetry. Kephalofacial distances are on average 7.6% shorter when obtained by direct anthropometry. The difference between the two techniques is particularly evident in total head height (vertex-gnathion) due to the fact that vertex is usually covered by hair and escapes from photogrammetry. Also the distances photographic sellion-gnathion (1.3 cm, i. e. 11.6%) and nasal-gnathion (1.2 cm, i. e. 9.4%) differ by more than one centimetre. Differences below 0.5 cm between the two techniques were found when measuring mucosa-lip-height (2.2%), gonia (3.0%), glabella-stomion (3.9%), and nose height (glabella-subnasal) (4.0%). Only the estimates of forehead width were significantly narrower when obtained by 2D-photogrammetry (-1.4 cm, -13.1%). The methodological differences increased with increasing magnitude of the kephalometric distance. Apart from these limitations, both techniques are similarly valid and may replace each other. Y1 - 2010 UR - http://www.ingentaconnect.com/content/schweiz/aa U6 - https://doi.org/10.1127/0003-5548/2010/0012 SN - 0003-5548 ER - TY - JOUR A1 - Fischer, Markus A1 - Burkart, Michael A1 - Pasqualetto, Vanessa A1 - van Kleunen, Mark T1 - Experiment meets biogeography : plants of river corridor distribution are not more stress tolerant but benefit less from more benign conditions elsewhere N2 - Aims: Factors limiting distributions of species are fundamental to ecology and evolution but have rarely been addressed experimentally for multiple species. The conspicuous linear distribution patterns of plant species confined to river corridors in the Central European lowlands constitute an especially long-standing distribution puzzle. We experimentally tested our novel hypothesis that the tolerance of species to river corridor conditions is independent of the degree of confinement to river corridor habitats, but that species not confined to river corridors are better able to take advantage of the more benign non-river corridor conditions. Methods: We grew 42 herbaceous species differing in their confinement to river corridors in a common garden experiment on loamy soil typical for river corridor areas and sandy soil typical for non-river corridor areas, and with and without a flooding period. For a subset of species, we grew plants of both river corridor and non-river corridor origin to test for adaptation to river corridor conditions. Important findings: Species more confined to river corridor areas benefited less from the more benign non-flooded and non-river corridor soil conditions than species of wider distributional range did. For subsets of 7 and 12 widespread species, the response to flooding and soil origin, respectively, did not differ between plants from river corridor sites and plants from other sites, suggesting that the habitat tolerance of widespread species is clue to phenotypic plasticity rather than to local adaptation. Overall, we found clear support for our novel hypothesis that species not confined to river corridors are more able to take advantage of the more benign non-river corridor conditions. Our study provides a general hypothesis on differences between species confined to stressful habitats and widespread species out for test in further multispecies comparative experiments. Y1 - 2010 UR - http://jpe.oxfordjournals.org/ U6 - https://doi.org/10.1093/Jpe/Rtq013 SN - 1752-9921 ER - TY - JOUR A1 - Fischer, Markus A1 - Bossdorf, Oliver A1 - Gockel, Sonja A1 - Haensel, Falk A1 - Hemp, Andreas A1 - Hessenmoeller, Dominik A1 - Korte, Gunnar A1 - Nieschulze, Jens A1 - Pfeiffer, Simone A1 - Prati, Daniel A1 - Renner, Swen A1 - Schoening, Ingo A1 - Schumacher, Uta A1 - Wells, Konstans A1 - Buscot, Francois A1 - Kalko, Elisabeth K. V. A1 - Linsenmair, Karl Eduard A1 - Schulze, Ernst-Detlef A1 - Weisser, Wolfgang W. T1 - Implementing large-scale and long-term functional biodiversity research : the biodiversity exploratories N2 - Functional biodiversity research explores drivers and functional consequences of biodiversity changes Land use change is a major driver of changes of biodiversity and of biogeochemical and biological ecosystem processes and services However, land use effects on genetic and species diversity are well documented only for a few taxa and trophic networks We hardly know how different components of biodiversity and their responses to land use change are interrelated and very little about the simultaneous, and interacting, effects of land use on multiple ecosystem processes and services Moreover, we do not know to what extent land use effects on ecosystem processes and services are mediated by biodiversity change Thus, overall goals are on the one hand to understand the effects of land use on biodiversity and on the other to understand the modifying role of biodiversity change for land-use effects on ecosystem processes, including biogeochemical cycles To comprehensively address these Important questions, we recently established a new large-scale and long-term project for functional biodiversity, the Biodiversity Exploratories (www biodiversity-exploratories de) They comprise a hierarchical set of standardized field plots in three different regions of Germany covering manifold management types and intensities in grasslands and forests They serve as a joint research platform for currently 40 projects involving over 300 people studying various aspects of the relationships between land use biodiversity and ecosystem processes through monitoring, comparative observation and experiments We introduce guiding questions, concept and design of the Biodiversity Exploratories - including main aspects of selection and implementation of field plots and project structure - and we discuss the significance of this approach for further functional biodiversity research This includes the crucial relevance of a common study design encompassing variation in both drivers and outcomes of biodiversity change and ecosystem processes, the interdisciplinary integration of biodiversity and ecosystem researchers, the training of a new generation of integrative biodiversity researchers, and the stimulation of functional biodiversity research in real landscape contexts, in Germany and elsewhere. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/14391791 U6 - https://doi.org/10.1016/j.baae.2010.07.009 SN - 1439-1791 ER - TY - JOUR A1 - Fettke, Jörg A1 - Albrecht, Tanja A1 - Hejazi, Mahdi A1 - Mahlow, Sebastian A1 - Nakamura, Yasunori A1 - Steup, Martin T1 - Glucose 1-phosphate is efficiently taken up by potato (Solanum tuberosum) tuber parenchyma cells and converted to reserve starch granules N2 - Reserve starch is an important plant product but the actual biosynthetic process is not yet fully understood. Potato (Solanum tuberosum) tuber discs from various transgenic plants were used to analyse the conversion of external sugars or sugar derivatives to starch. By using in vitro assays, a direct glucosyl transfer from glucose 1-phosphate to native starch granules as mediated by recombinant plastidial phosphorylase was analysed. Compared with labelled glucose, glucose 6-phosphate or sucrose, tuber discs converted externally supplied [C-14] glucose 1-phosphate into starch at a much higher rate. Likewise, tuber discs from transgenic lines with a strongly reduced expression of cytosolic phosphoglucomutase, phosphorylase or transglucosidase converted glucose 1-phosphate to starch with the same or even an increased rate compared with the wild-type. Similar results were obtained with transgenic potato lines possessing a strongly reduced activity of both the cytosolic and the plastidial phosphoglucomutase. Starch labelling was, however, significantly diminished in transgenic lines, with a reduced concentration of the plastidial phosphorylase isozymes. Two distinct paths of reserve starch biosynthesis are proposed that explain, at a biochemical level, the phenotype of several transgenic plant lines. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0028-646X U6 - https://doi.org/10.1111/j.1469-8137.2009.03126.x SN - 0028-646X ER - TY - JOUR A1 - Esther, Alexandra A1 - Groeneveld, Juergen A1 - Enright, Neal J. A1 - Miller, Ben P. A1 - Lamont, Byron B. A1 - Perry, George L. W. A1 - Blank, F. Benjamin A1 - Jeltsch, Florian T1 - Sensitivity of plant functional types to climate change : classification tree analysis of a simulation model N2 - Question: The majority of studies investigating the impact of climate change on local plant communities ignores changes in regional processes, such as immigration from the regional seed pool. Here we explore: (i) the potential impact of climate change on composition of the regional seed pool, (ii) the influence of changes in climate and in the regional seed pool on local community structure, and (iii) the combinations of life history traits, i.e. plant functional types (PFTs), that are most affected by environmental changes. Location: Fire-prone, Mediterranean-type shrublands in southwestern Australia. Methods: Spatially explicit simulation experiments were conducted at the population level under different rainfall and fire regime scenarios to determine the effect of environmental change on the regional seed pool for 38 PFTs. The effects of environmental and seed immigration changes on local community dynamics were then derived from community-level experiments. Classification tree analyses were used to investigate PFT- specific vulnerabilities to climate change. Results: The classification tree analyses revealed that responses of PFTs to climate change are determined by specific trait characteristics. PFT-specific seed production and community patterns responded in a complex manner to climate change. For example, an increase in annual rainfall caused an increase in numbers of dispersed seeds for some PFTs, but decreased PFT diversity in the community. Conversely, a simulated decrease in rainfall reduced the number of dispersed seeds and diversity of PFTs. Conclusions: PFT interactions and regional processes must be considered when assessing how local community structure will be affected by environmental change. Y1 - 2010 UR - http://www3.interscience.wiley.com/journal/121642345/home U6 - https://doi.org/10.1111/j.1654-1103.2009.01155.x SN - 1100-9233 ER - TY - JOUR A1 - Epp, Laura Saskia A1 - Stoof, Kathleen R. A1 - Trauth, Martin H. A1 - Tiedemann, Ralph T1 - Historical genetics on a sediment core from a Kenyan lake : intraspecific genotype turnover in a tropical rotifer is related to past environmental changes N2 - Using molecular genetic methods and an ancient DNA approach, we studied population and species succession of rotifers of the genus Brachionus in the Kenyan alkaline-saline crater lake Sonachi since the beginning of the 19th century as well as distribution of Brachionus haplotypes in recent and historic sediments of other lakes of the East African Rift System. The sediment core record of Lake Sonachi displays haplotypes of a distinct evolutionary lineage in all increments. Populations were dominated by a single mitochondrial haplotype for a period of 150 years, and two putatively intraspecific turnovers in dominance occurred. Both changes are concordant with major environmental perturbations documented by a profound visible change in sediment composition of the core. The first change was very abrupt and occurred after the deposition of volcanic ash at the beginning of the 19th century. The second change coincides with a major lake level lowstand during the 1940s. It was preceded by a period of successively declining lake level, in which two other haplotypes appeared in the lake. One of these putatively belongs to another species documented in historical and recent Kenyan lake sediments. The analysis of plankton population dynamics through historical time can reveal patterns of population persistence and turnover in relation to environmental changes. Y1 - 2010 UR - http://www.springerlink.com/content/100294 U6 - https://doi.org/10.1007/s10933-009-9379-7 SN - 0921-2728 ER - TY - JOUR A1 - Dubin, Manu A1 - Fuchs, Joerg A1 - Gräf, Ralph A1 - Schubert, Ingo A1 - Nellen, Wolfgang T1 - Dynamics of a novel centromeric histone variant CenH3 reveals the evolutionary ancestral timing of centromere biogenesis N2 - The centromeric histone H3 variant (CenH3) serves to target the kinetochore to the centromeres and thus ensures correct chromosome segregation during mitosis and meiosis. The Dictyostelium H3-like variant H3v1 was identified as the CenH3 ortholog. Dictyostelium CenH3 has an extended N-terminal domain with no similarity to any other known proteins and a histone fold domain at its C-terminus. Within the histone fold, alpha-helix 2 (alpha 2) and an extended loop 1 (L1) have been shown to be required for targeting CenH3 to centromeres. Compared to other known and putative CenH3 histones, Dictyostelium CenH3 has a shorter L1, suggesting that the extension is not an obligatory feature. Through ChIP analysis and fluorescence microscopy of live and fixed cells, we provide here the first survey of centromere structure in amoebozoa. The six telocentric centromeres were found to mostly consist of all the DIRS-1 elements and to associate with H3K9me3. During interphase, the centromeres remain attached to the centrosome forming a single CenH3-containing cluster. Loading of Dictyostelium CenH3 onto centromeres occurs at the G2/prophase transition, in contrast to the anaphase/ telophase loading of CenH3 observed in metazoans. This suggests that loading during G2/prophase is the ancestral eukaryotic mechanism and that anaphase/telophase loading of CenH3 has evolved more recently after the amoebozoa diverged from the animal linage. Y1 - 2010 UR - http://nar.oxfordjournals.org/ U6 - https://doi.org/10.1093/Nar/Gkq664 SN - 0305-1048 ER - TY - JOUR A1 - Dortay, Hakan A1 - Müller-Röber, Bernd T1 - A highly efficient pipeline for protein expression in Leishmania tarentolae using infrared fluorescence protein as marker N2 - Background: Leishmania tarentolae, a unicellular eukaryotic protozoan, has been established as a novel host for recombinant protein production in recent years. Current protocols for protein expression in Leishmania are, however, time consuming and require extensive lab work in order to identify well-expressing cell lines. Here we established an alternative protein expression work-flow that employs recently engineered infrared fluorescence protein (IFP) as a suitable and easy-to-handle reporter protein for recombinant protein expression in Leishmania. As model proteins we tested three proteins from the plant Arabidopsis thaliana, including a NAC and a type-B ARR transcription factor. Results: IFP and IFP fusion proteins were expressed in Leishmania and rapidly detected in cells by deconvolution microscopy and in culture by infrared imaging of 96-well microtiter plates using small cell culture volumes (2 mu L Y1 - 2010 UR - http://www.microbialcellfactories.com/home/ U6 - https://doi.org/10.1186/1475-2859-9-29 SN - 1475-2859 ER - TY - JOUR A1 - Doorduin, Leonie J. A1 - van den Hof, Kevin A1 - Vrieling, Klaas A1 - Joshi, Jasmin Radha T1 - The lack of genetic bottleneck in invasive Tansy ragwort populations suggests multiple source populations N2 - Jacobaea vulgaris (Asteraceae) is a species of Eurasian origin that has become a serious non-indigenous weed in Australia, New Zealand, and North America. We used neutral molecular markers to (1) test for genetic bottlenecks in invasive populations and (2) to investigate the invasion pathways. It is for the first time that molecular markers were used to unravel the process of introduction in this species. The genetic variation of 15 native populations from Europe and 16 invasive populations from Australia, New Zealand and North America were compared using the amplified fragment length polymorphisms (AFLP's). An analysis of molecular variance showed that a significant part (10%) of the total genetic variations between all individuals could be explained by native or invasive origin. Significant among-population differentiation was detected only in the native range, whereas populations from the invasive areas did not significantly differ from each other; nor did the Australian, New Zealand and North American regions differ within the invasive range. The result that native populations differed significantly from each other and that the amount of genetic variation, measured as the number of polymorphic bands, did not differ between the native and invasive area, strongly suggests that introductions from multiple source populations have occurred. The lack of differentiation between invasive regions suggests that either introductions may have occurred from the same native sources in all invasive regions or subsequent introductions took place from one into another invasive region and the same mix of genotypes was subsequently introduced into all invasive regions. An assignment test showed that European populations from Ireland, the Netherlands and the United Kingdom most resembled the invasive populations. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/14391791 U6 - https://doi.org/10.1016/j.baae.2009.12.007 SN - 1439-1791 ER - TY - JOUR A1 - Disney, Mathias I. A1 - Kalogirou, Vasileios A1 - Lewis, Philip A1 - Prieto-Blanco, Ana A1 - Hancock, Steve A1 - Pfeifer, Marion T1 - Simulating the impact of discrete-return lidar system and survey characteristics over young conifer and broadleaf forests N2 - We present a model-based investigation of the effect of discrete-return lidar system and survey characteristics on the signal recorded over young forest environments. A Monte Carlo ray tracing (MCRT) model of canopy scattering was used to examine the sensitivity of model estimates of lidar-derived canopy height, h(lidar) to signal triggering method, canopy structure, footprint size, sampling density and scanning angle, for broadleaf and conifer canopies of varying density. Detailed 3D models of Scots pine (Pinus sylvestris) and Downy birch (Betula pubescens) were used to simulate lidar response, with minimal assumptions about canopy structure. Use of such models allowed the impact of lidar parameters on canopy height retrieval to be tested under a range of conditions typically not possible in practice. Retrieved h(lidar) was generally found to be an underestimate of 'true' canopy height, h(canopy), but with exceptions. Choice of signal triggering method caused h(lidar), to underestimate h(canopy) by similar to 4% for birch and similar to 7% for pine (up to 66% in extreme cases). Variations in canopy structure resulted on average in underestimation of h(canopy) by 13% for birch and between 29 and 48% for pine depending on age, but with over-estimates in some cases of up to 10%. Increasing footprint diameter from 0.1 to 1 m increased retrieved h(lidar) from significant underestimates of h(canopy) to values indistinguishable from h(canopy). Increased sampling density led to slightly increased values of h(lidar) to close to h(canopy), but not significantly. Increasing scan angle increased h(lidar) by up to 8% for birch, and 19% for pine at a scan angle of 30 degrees. The impact of scan angle was greater for conifers as a result of large variation in crown height. Results showed that interactions between physically modelled (hypothetical) within canopy returns are similar to findings made in other studies using actual lidar systems, and that these modelled returns can depend strongly on the type of canopy and the lidar acquisition characteristics, as well as interactions between these properties. Physical models of laser pulse/canopy interactions may provide additional information on pulse interactions within the canopy, but require validation and testing before they are applied to actual survey planning and logistics. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00344257 U6 - https://doi.org/10.1016/j.rse.2010.02.009 SN - 0034-4257 ER - TY - JOUR A1 - de Frenne, Pieter A1 - Graae, Bente Jessen A1 - Kolb, Annette A1 - Brunet, Jörg A1 - Chabrerie, Olivier A1 - Cousins, Sara A. O. A1 - Decocq, Guillaume A1 - Dhondt, Rob A1 - Diekmann, Martin A1 - Eriksson, Olof A1 - Heinken, Thilo A1 - Hermy, Martin A1 - Jögar, uelle A1 - Saguez, Robert A1 - Shevtsova, Anna A1 - Stanton, Sharon A1 - Zindel, Renate A1 - Zobel, Martin A1 - Verheyen, Kris T1 - Significant effects of temperature on the reproductive output of the forest herb Anemone nemorosa L. N2 - Climate warming is already influencing plant migration in different parts of the world. Numerous models have been developed to forecast future plant distributions. Few studies, however, have investigated the potential effect of warming on the reproductive output of plants. Understorey forest herbs in particular, have received little attention in the debate on climate change impacts. This study focuses on the effect of temperature on sexual reproductive output (number of seeds, seed mass, germination percentage and seedling mass) of Anemone nemorosa L., a model species for slow colonizing herbaceous forest plants. We sampled seeds of A. nemorosa in populations along a 2400 km latitudinal gradient from northern France to northern Sweden during three growing seasons (2005,2006 and 2008). This study design allowed us to isolate the effects of accumulated temperature (Growing Degree Hours; GDH) from latitude and the local abiotic and biotic environment. Germination and seed sowing trials were performed in incubators, a greenhouse and under field conditions in a forest. Finally, we disentangled correlations between the different reproductive traits of A. nemorosa along the latitudinal gradient. We found a clear positive relationship between accumulated temperature and seed and seedling traits: reproductive output of A. nemorosa improved with increasing GDH along the latitudinal gradient. Seed mass and seedling mass, for instance, increased by 9.7% and 10.4%, respectively, for every 1000 degrees C h increase in GDH. We also derived strong correlations between several seed and seedling traits both under field conditions and in incubators. Our results indicate that seed mass, incubator-based germination percentage (Germ%(Inc)) and the output of germinable seeds (product of number of seeds and Germ%(Inc) divided by 100) from plants grown along a latitudinal gradient (i.e. at different temperature regimes) provide valuable proxies to parameterize key population processes in models. We conclude that (1) climate warming may have a pronounced positive impact on sexual reproduction of A. nemorosa and (2) climate models forecasting plant distributions would benefit from including the temperature sensitivity of key seed traits and population processes. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/03781127 U6 - https://doi.org/10.1016/j.foreco.2009.04.038 SN - 0378-1127 ER - TY - JOUR A1 - Daskalow, Katjana A1 - Boisguerin, Prisca A1 - Jandrig, Burkhard A1 - van Landeghem, Frank K. H. A1 - Volkmer, Rudolf A1 - Micheel, Burkhard A1 - Schenk, Jörg A. T1 - Generation of an antibody against the protein phosphatase 1 inhibitor KEPI and characterization of the epitope N2 - A monoclonal antibody against the potential tumor suppressor kinase-enhanced protein phosphatase 1 (PP1) inhibitor KEPI (PPP1R14C) was generated and characterized. Human KEPI was expressed in Escherichia coli and used to immunize Balb/c mice. Using hybridoma technology, one clone, G18AF8, was isolated producing antibodies which bound specifically to the KEPI protein in ELISA, immunoblotting and flow cytometry. The antibody was also successfully applied to stain KEPI protein in paraffin sections of human brain. The epitope was mapped using peptide array technology and confirmed as GARVFFQSPR. This corresponds to the N-terminal region of KEPI. Amino acid substitution analysis revealed that two residues, F and Q, are essential for binding. Affinity of binding was determined by competitive ELISA as 1 mu M. In Western blot assays testing G18AF8 antibody on brain samples of several species, reactivity with hamster, rat and chicken samples was found, suggesting a broad homology of this KEPI epitope in vertebrates. This antibody could be used in expression studies at the protein level e.g. in tumor tissues. Y1 - 2010 UR - http://ar.iiarjournals.org/ SN - 0250-7005 ER - TY - JOUR A1 - Czech, Andreas A1 - Fedyunin, Ivan A1 - Zhang, Gong A1 - Ignatova, Zoya T1 - Silent mutations in sight : co-variations in tRNA abundance as a key to unravel consequences of silent mutations N2 - Mutations that alter the amino acid sequence are known to potentially exert deleterious effects on protein function, whereas substitutions of nucleotides without amino acid change are assumed to be neutral for the protein's functionality. However, cumulative evidence suggests that synonymous substitutions might also induce phenotypic variability by affecting splicing accuracy, translation fidelity, and conformation and function of proteins. tRNA isoacceptors mediate the translation of codons to amino acids, and asymmetric tRNA abundance causes variations in the rate of translation of each single triplet. Consequently, the effect of a silent point mutation in the coding region could be significant due to differential abundances of the cognate tRNA(s), emphasizing the importance of precise assessment of tRNA composition. Here, we provide an overview of the methods used to quantitatively determine the concentrations of tRNA species and discuss synonymous mutations in the context of tRNA composition of the cell, thus providing a new twist on the detrimental impact of the silent mutations. Y1 - 2010 UR - http://www.rsc.org/Publishing/Journals/mb/index.asp U6 - https://doi.org/10.1039/C004796c SN - 1742-206X ER - TY - JOUR A1 - Comparot-Moss, Sylviane A1 - Koetting, Oliver A1 - Stettler, Michaela A1 - Edner, Christoph A1 - Graf, Alexander A1 - Weise, Sean E. A1 - Streb, Sebastian A1 - Lue, Wei-Ling A1 - MacLean, Daniel A1 - Mahlow, Sebastian A1 - Ritte, Gerhard A1 - Steup, Martin A1 - Chen, Jychian A1 - Zeeman, Samuel C. A1 - Smith, Alison M. T1 - A putative phosphatase, LSF1, is required for normal starch turnover in Arabidopsis leaves N2 - A putative phosphatase, LSF1 (for LIKE SEX4; previously PTPKIS2), is closely related in sequence and structure to STARCH-EXCESS4 (SEX4), an enzyme necessary for the removal of phosphate groups from starch polymers during starch degradation in Arabidopsis (Arabidopsis thaliana) leaves at night. We show that LSF1 is also required for starch degradation: lsf1 mutants, like sex4 mutants, have substantially more starch in their leaves than wild-type plants throughout the diurnal cycle. LSF1 is chloroplastic and is located on the surface of starch granules. lsf1 and sex4 mutants show similar, extensive changes relative to wild-type plants in the expression of sugar-sensitive genes. However, although LSF1 and SEX4 are probably both involved in the early stages of starch degradation, we show that LSF1 neither catalyzes the same reaction as SEX4 nor mediates a sequential step in the pathway. Evidence includes the contents and metabolism of phosphorylated glucans in the single mutants. The sex4 mutant accumulates soluble phospho- oligosaccharides undetectable in wild-type plants and is deficient in a starch granule-dephosphorylating activity present in wild-type plants. The lsf1 mutant displays neither of these phenotypes. The phenotype of the lsf1/sex4 double mutant also differs from that of both single mutants in several respects. We discuss the possible role of the LSF1 protein in starch degradation. Y1 - 2010 UR - http://www.plantphysiol.org/ U6 - https://doi.org/10.1104/pp.109.148981 SN - 0032-0889 ER - TY - JOUR A1 - Childs, Liam H. A1 - Witucka-Wall, Hanna A1 - Guenther, Torsten A1 - Sulpice, Ronan A1 - Korff, Maria V. A1 - Stitt, Mark A1 - Walther, Dirk A1 - Schmid, Karl J. A1 - Altmann, Thomas T1 - Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth- related metabolic traits in Arabidopsis thaliana N2 - Background: Natural accessions of Arabidopsis thaliana are characterized by a high level of phenotypic variation that can be used to investigate the extent and mode of selection on the primary metabolic traits. A collection of 54 A. thaliana natural accession-derived lines were subjected to deep genotyping through Single Feature Polymorphism (SFP) detection via genomic DNA hybridization to Arabidopsis Tiling 1.0 Arrays for the detection of selective sweeps, and identification of associations between sweep regions and growth-related metabolic traits. Results: A total of 1,072,557 high-quality SFPs were detected and indications for 3,943 deletions and 1,007 duplications were obtained. A significantly lower than expected SFP frequency was observed in protein-, rRNA-, and tRNA-coding regions and in non- repetitive intergenic regions, while pseudogenes, transposons, and non-coding RNA genes are enriched with SFPs. Gene families involved in plant defence or in signalling were identified as highly polymorphic, while several other families including transcription factors are depleted of SFPs. 198 significant associations between metabolic genes and 9 metabolic and growth-related phenotypic traits were detected with annotation hinting at the nature of the relationship. Five significant selective sweep regions were also detected of which one associated significantly with a metabolic trait. Conclusions: We generated a high density polymorphism map for 54 A. thaliana accessions that highlights the variability of resistance genes across geographic ranges and used it to identify selective sweeps and associations between metabolic genes and metabolic phenotypes. Several associations show a clear biological relationship, while many remain requiring further investigation. Y1 - 2010 UR - http://www.biomedcentral.com/1471-2164/ U6 - https://doi.org/10.1186/1471-2164-11-188 SN - 1471-2164 ER - TY - JOUR A1 - Burkart, Michael A1 - Alsleben, Katja A1 - Lachmuth, Susanne A1 - Schumacher, Juliane A1 - Hofmann, Ralf A1 - Jeltsch, Florian A1 - Schurr, Frank Martin T1 - Recruitment requirements of the rare and threatened Juncus atratus N2 - The long-term persistence of populations and species depends on the successful recruitment of individuals. The generative recruitment of plants may be limited by a lack of suitable germination and establishment conditions. Establishment limitation may especially be caused by the competitive effect of surrounding dense vegetation, which is believed to restrict the recruitment success of many plant species to small open patches ('safe sites'). We conducted experiments to clarify the roles of germination and seedling establishment as limiting processes in the recruitment of Juncus atratus Krock., a rare and threatened herbaceous perennial river corridor plant in Central Europe. Light intensity had a positive effect on germination. However, some seedlings emerged even in total darkness and the germination rate at 1% light intensity was more than half of that at 60% light intensity. Seedling establishment in the field after 10 weeks was 30% on bare ground, but it was close to zero in grassland. Establishment in the growth chamber after 8 weeks was close to 75% for seedlings that germinated underwater, but only about 35% for seedlings that germinated afloat. Furthermore, establishment decreased with flooding duration on bare ground, but increased with flooding duration in grassland. These data indicate that establishment, rather than germination, is a critical life stage in Central European populations off. atratus. They furthermore indicate that the competition of surrounding vegetation for water limits seedling establishment under field conditions without flooding, largely restricting establishment success to bare ground habitats. In contrast, grassland is more suitable for the recruitment off. atratus than bare ground under prolonged flooding. Grassland may facilitate the establishment off. atratus seedlings during long- lasting floods by supplying oxygen to the soil through aerenchyma. The shift from competition to facilitation in grassland occurred after 30 days of flooding, i.e. within the ontogeny of individual plants. The specific recruitment requirements off. arrows may be a main cause of its rarity in modern Central Europe. In order to prevent regional extinction off. atratus, we suggest maintaining or re-establishing natural hydrodynamics in the species' habitats. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/03672530 U6 - https://doi.org/10.1016/j.flora.2009.08.003 SN - 0367-2530 ER - TY - JOUR A1 - Baumann, Otto A1 - Salvaterra, Paul M. A1 - Takeyasu, Kunio T1 - Developmental changes in beta-subunit composition of Na,K-ATPase in the Drosophila eye N2 - The Drosophila genome contains at least three loci for the Na,K-ATPase beta-subunit; however, only the protein products of nrv1 and nrv2 have been characterized hitherto. Here, we provide evidence that nrv3 also encodes for a functional Na,K-ATPase beta-subunit, as its protein product co-precipitates with the Na,K-ATPase alpha-subunit. Nrv3 expression in adult flies is restricted to the nervous system in which Nrv3 is enriched in selective types of sensory cells. Because Nrv3 expression is especially prominent in the compound eye, we have analyzed the subcellular and developmental distribution of Nrv3 within the visual cells and related this distribution to those of the alpha-subunit and of the beta-subunits Nrv1 and Nrv2. Prospective visual cells express Nrv2 in the third larval instar stage and during the first half of pupal development. During the last third of pupal life, Nrv3 gradually replaces Nrv2 as the Na,K-ATPase beta-subunit in the photoreceptor cells. Adult photoreceptors express Nrv3 as their major beta-subunit; the visual cells R1-R6 co-express Nrv2 at a low level, whereas R7 and R8 co-express Nrv1. Notably, beta-subunits do not co- distribute exactly with the alpha-subunit at some developmental stages, supporting the concept that the alpha-subunit and beta-subunit can exist in the plasma membrane without being engaged in alpha/beta heterodimers. The non-visual cells within the compound eye express almost exclusively Nrv2, which segregates together with the alpha-subunit to septate junctions throughout development. Y1 - 2010 UR - http://www.springerlink.com/content/100524 U6 - https://doi.org/10.1007/s00441-010-0948-x SN - 0302-766X ER - TY - JOUR A1 - Bauer, Barbara A1 - Jordan, Ferenc A1 - Podani, János T1 - Node centrality indices in food webs : rank orders versus distributions N2 - Network analysis examines the role of species in ecological communities. The most common approach involves measurement of centrality of species or other groups of individuals based on their topological positions in food webs, followed by establishing the rank order of importance of these groups. However, ranking may differ considerably with indices of centrality and therefore comparison of rank orders is essential to obtain more meaningful results on species performance. Since ranking ignores absolute differences between centrality values, species orders may neglect important structural information in food webs. Consequently, simultaneous examination of the distribution of index values is inevitable. Hierarchical clustering and consensus generation revealed that rank orders of centrality exhibit a similar pattern over six example food webs, while distributions differ not only with indices because their relationships are largely inconsistent with food webs as well. Therefore, optimal analysis of networks and the selection of keystone species in any ecological study should rely upon both of these procedures. Similar conclusions are drawn from the detailed evaluation of a sample food web from the Florida Bay. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/1476945X U6 - https://doi.org/10.1016/j.ecocom.2009.11.006 SN - 1476-945X ER - TY - JOUR A1 - Balazadeh, Salma A1 - Siddiqui, Hamad A1 - Allu, Annapurna Devi A1 - Matallana-Ramirez, Lilian Paola A1 - Caldana, Camila A1 - Mehrnia, Mohammad A1 - Zanor, Maria-Inés A1 - Koehler, Barbara A1 - Müller-Röber, Bernd T1 - A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence N2 - P>The onset and progression of senescence are under genetic and environmental control. The Arabidopsis thaliana NAC transcription factor ANAC092 (also called AtNAC2 and ORE1) has recently been shown to control age-dependent senescence, but its mode of action has not been analysed yet. To explore the regulatory network administered by ANAC092 we performed microarray-based expression profiling using estradiol-inducible ANAC092 overexpression lines. Approximately 46% of the 170 genes up-regulated upon ANAC092 induction are known senescence-associated genes, suggesting that the NAC factor exerts its role in senescence through a regulatory network that includes many of the genes previously reported to be senescence regulated. We selected 39 candidate genes and confirmed their time-dependent response to enhanced ANAC092 expression by quantitative RT-PCR. We also found that the majority of them (24 genes) are up-regulated by salt stress, a major promoter of plant senescence, in a manner similar to that of ANAC092, which itself is salt responsive. Furthermore, 24 genes like ANAC092 turned out to be stage-dependently expressed during seed growth with low expression at early and elevated expression at late stages of seed development. Disruption of ANAC092 increased the rate of seed germination under saline conditions, whereas the opposite occurred in respective overexpression plants. We also detected a delay of salinity-induced chlorophyll loss in detached anac092-1 mutant leaves. Promoter-reporter (GUS) studies revealed transcriptional control of ANAC092 expression during leaf and flower ageing and in response to salt stress. We conclude that ANAC092 exerts its functions during senescence and seed germination through partly overlapping target gene sets. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0960-7412 U6 - https://doi.org/10.1111/j.1365-313X.2010.04151.x SN - 0960-7412 ER - TY - JOUR A1 - Baeumner, Antje J. A1 - Gauglitz, Guenter A1 - Scheller, Frieder W. T1 - Focus on bioanalysis N2 - Editoria Y1 - 2010 UR - http://www.springerlink.com/content/100417 U6 - https://doi.org/10.1007/s00216-010-4203-9 SN - 1618-2642 ER - TY - JOUR A1 - Averbeck, Christiane A1 - Apio, Ann A1 - Plath, Martin A1 - Wronski, Torsten T1 - Hunting differentially affects mixed-sex and bachelor-herds in a gregarious ungulate, the impala (Aepyceros melampus: Bovidae) N2 - We investigated herd-sizes and herd-compositions of Impala (Aepyceros melampus) inside a protected area [Lake Mburo National Park (LMNP) in western Uganda] and the unprotected adjacent ranchland [the Ankole Ranching Scheme (ARS)]. Impala experience intense hunting and poaching in the study area, and poaching is especially strong on the ARS. We found evidence for changes in overall group-sizes in both mixed-sex and pure bachelor herds between areas in and outside LMNP. Mixed-sex herds strongly decreased in size outside the National Park, but bachelor herds even slightly increased in size. While the group-composition of mixed-sex herds was very similar in areas in and outside LMNP, bachelor herds comprised more yearlings and subadult males on the ARS. Our study suggests that effects of hunting and other human nuisance may differ between herd types: mixed herds probably decrease in size because females are more strongly hunted. Around LMNP, impala are usually hunted using nets and spears, thereby increasing the hunters' chance of being injured. Poachers therefore prefer hornless females (and their calves), as it is less dangerous to handle net-caught females than males. As a result, males are less hunted, but increased vigilance and, therefore, reduced aggression among the members of a bachelor herd, may account for the observed increase in herd sizes and changes in group-compositions. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0141-6707 U6 - https://doi.org/10.1111/j.1365-2028.2009.01118.x SN - 0141-6707 ER - TY - JOUR A1 - Appelhagen, Ingo A1 - Huep, Gunnar A1 - Lu, Gui-Hua A1 - Strompen, Georg A1 - Weisshaar, Bernd A1 - Sagasser, Martin T1 - Weird fingers : functional analysis of WIP domain proteins N2 - WIP proteins form a plant specific subfamily of C2H2 zinc finger (ZF) proteins. In this study, we functionally characterized the WIP domain, which consists of four ZF motifs, and discuss molecular functions for WIP proteins. Mutations in each of the ZFs lead to loss of function of the TT1/WIP1 protein in Arabiopsis thaliana. SV40 type nuclear localisation signals were detected in two of the ZFs and functionally characterized using GFP fusions as well as new mutant alleles identified by TILLING. Promoter swap experiments showed that selected WIP proteins are partially able to take over TT1 function. Activity of the AtBAN promoter, a potential TT1 target, could be increased by the addition of TT1 to the TT2-TT8-TTG1 regulatory complex. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00145793 U6 - https://doi.org/10.1016/j.febslet.2010.06.007 SN - 0014-5793 ER - TY - JOUR A1 - Apio, Ann A1 - Kabasa, John David A1 - Ketmaier, Valerio A1 - Schroeder, Christoph A1 - Plath, Martin A1 - Tiedemann, Ralph T1 - Female philopatry and male dispersal in a cryptic, bush-dwelling antelope : a combined molecular and behavioural approach N2 - In most mammals, females are philopatric while males disperse in order to avoid inbreeding. We investigated social structure in a solitary ungulate, the bushbuck Tragelaphus sylvaticus in Queen Elizabeth National Park, Uganda by combining behavioural and molecular data. We correlated spatial and social vicinity of individual females with a relatedness score obtained from mitochondrial DNA analysis. Presumed clan members shared the same haplotype, showed more socio-positive interactions and had a common home range. Males had a higher haplotype diversity than females. All this suggests the presence of a matrilineal structure in the study population. Moreover, we tested natal dispersal distances between male and female yearlings and used control region sequences to confirm that females remain in their natal breeding areas whereas males disperse. In microsatellite analysis, males showed a higher genetic variability than females. The impoverished genetic variability of females at both molecular marker sets is consistent with a philopatric and matrilineal structure, while the higher degree of genetic variability of males is congruent with a higher dispersal rate expected in this sex. Evidence even for male long-distance dispersal is brought about by one male carrying a haplotype of a different subspecies, previously not described to occur in this area. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0952-8369 U6 - https://doi.org/10.1111/j.1469-7998.2009.00654.x SN - 0952-8369 ER - TY - JOUR A1 - Ansell, Stephen W. A1 - Stenoien, Hans K. A1 - Grundmann, Michael A1 - Schneider, Harald A1 - Hemp, Andreas A1 - Bauer, N. A1 - Russell, S. J. A1 - Vogel, Johannes C. T1 - Population structure and historical biogeography of European Arabidopsis lyrata N2 - Understanding the natural history of model organisms is important for the effective use of their genomic resourses. Arabidopsis lyrata has emerged as a useful plant for studying ecological and evolutionary genetics, based on its extensive natural variation, sequenced genome and close relationship to A. thaliana. We studied genetic diversity across the entire range of European Arabidopsis lyrata ssp. petraea, in order to explore how population history has influenced population structure. We sampled multiple populations from each region, using nuclear and chloroplast genome markers, and combined population genetic and phylogeographic approaches. Within-population diversity is substantial for nuclear allozyme markers (mean P = 0.610, A(e) = 1.580, H-e = 0.277) and significantly partitioned among populations (F- ST = 0.271). The Northern populations have modestly increased inbreeding (F-IS = 0.163 verses F-IS = 0.093), but retain comparable diversity to central European populations. Bottlenecks are common among central and northern Europe populations, indicating recent demographic history as a dominant factor in structuring the European diversity. Although the genetic structure was detected at all geographic scales, two clear differentiated units covering northern and central European areas (F-CT = 0.155) were identified by Bayesian analysis and supported by regional pairwise F-CT calculations. A highly similar geographic pattern was observed from the distribution of chloroplast haplotypes, with the dominant northern haplotypes absent from central Europe. We conclude A. l. petraea's cold-tolerance and preference for disturbed habitats enabled glacial survival between the alpine and Nordic glaciers in central Europe and an additional cryptic refugium. While German populations are probable peri-glacial leftovers, Eastern Austrian populations have diversity patterns possibly compatible with longer-term survival. Y1 - 2010 UR - http://www.nature.com/hdy/archive/index.html U6 - https://doi.org/10.1038/Hdy.2010.10 SN - 0018-067X ER - TY - JOUR A1 - Andres, Dorothee A1 - Hanke, Christin A1 - Baxa, Ulrich A1 - Seul, Anait A1 - Barbirz, Stefanie A1 - Seckler, Robert T1 - Tailspike interactions with lipopolysaccharide effect DNA ejection from phage P22 particles in vitro N2 - Initial attachment of bacteriophage P22 to the Salmonella host cell is known to be mediated by interactions between lipopolysaccharide (LPS) and the phage tailspike proteins (TSP), but the events that subsequently lead to DNA injection into the bacterium are unknown. We used the binding of a fluorescent dye and DNA accessibility to DNase and restriction enzymes to analyze DNA ejection from phage particles in vitro. Ejection was specifically triggered by aggregates of purified Salmonella LPS but not by LPS with different O-antigen structure, by lipid A, phospholipids, or soluble O-antigen polysaccharide. This suggests that P22 does not use a secondary receptor at the bacterial outer membrane surface. Using phage particles reconstituted with purified mutant TSP in vitro, we found that the endorhamnosidase activity of TSP degrading the O-antigen polysaccharide was required prior to DNA ejection in vitro and DNA replication in vivo. If, however, LPS was pre-digested with soluble TSP, it was no longer able to trigger DNA ejection, even though it still contained five O-antigen oligosaccharide repeats. Together with known data on the structure of LPS and phage P22, our results suggest a molecular model. In this model, tail-spikes position the phage particles on the outer membrane surface for DNA ejection. They force gp26, the central needle and plug protein of the phage tail machine, through the core oligosaccharide layer and into the hydrophobic portion of the outer membrane, leading to refolding of the gp26 lazo-domain, release of the plug, and ejection of DNA and pilot proteins. Y1 - 2010 UR - http://www.jbc.org/ U6 - https://doi.org/10.1074/jbc.M110.169003 SN - 0021-9258 ER - TY - JOUR A1 - Andres, Dorothee A1 - Baxa, Ulrich A1 - Hanke, Christin A1 - Seckler, Robert A1 - Barbirz, Stefanie T1 - Carbohydrate binding of Salmonella phage P22 tailspike protein and its role during host cell infection N2 - TSPs (tailspike proteins) are essential infection organelles of bacteriophage P22. Upon infection, P22TSP binds to and cleaves the O-antigen moiety of the LPS (lipopolysaccharide) of its Salmonella host To elucidate the role of TSP during infection, we have studied binding to oligosaccharides and polysaccharides of Salmonella enteric Typhimurium and Enteritidis in vitro. P22TSP is a trimeric beta-helical protein with a carbohydrate-binding site on each subunit. Octasaccharide O-antigen fragments bind to P22TSP with micromolar dissociation constants. Moreover, P22TSP is an endorhamnosidase and cleaves the host O-antigen. Catalytic residues lie at the periphery of the high-affinity binding site, which enables unproductive binding modes, resulting in slow hydrolysis. However, the role of this hydrolysis function during infection remains unclear. Binding of polysaccharide to P22TSP is of high avidity with slow dissociation rates when compared with oligosaccharides. In vivo, the infection of Salmonella with phage P22 can be completely inhibited by the addition of LPS, indicating that binding of phage to its host via TSP is an essential step for infection. Y1 - 2010 UR - http://www.biochemsoctrans.org/ U6 - https://doi.org/10.1042/Bst0381386 SN - 0300-5127 ER - TY - JOUR A1 - Abraham, Andreas A1 - Gruss, Michael T1 - Stress inoculation facilitates active avoidance learning of the semi-precocial rodent Octodon degus N2 - A growing body of evidence highlights the impact of the early social environment for the adequate development of brain and behavior in animals and humans. Disturbances of this environment were found to be both maladaptive and adaptive to emotional and cognitive function. Using the semi-precocial, biparental rodent Octodon degus, we aimed to examine (i) the impact of age (juvenile/adult), sex (male/female), and (ii) "motivation" to solve the task (by applying increasing foot-shock-intensities) on two-way active avoidance (TWA) learning in socially reared degus, and (iii) whether early life stress inoculation by 1 h daily parental separation during the first three weeks of life has maladaptive or adaptive consequences on cognitive function as measured by TWA learning. Our results showed that (i) juvenile degus, unlike altricial rats of the same age, can successfully learn the TWA task comparable to adults, and (ii) that learning performance improves with increasing "task motivation", irrespective of age and sex. Furthermore, we revealed that (iii) stress inoculation improves avoidance learning, particularly in juvenile males, quantitatively and qualitatively depending on "task motivation". In conclusion, the present study describes for the first time associative learning in O. degus and its modulation by early life stress experience as an animal model to study the underlying mechanisms of learning and memory in the stressed and unstressed brain. Although, stress is commonly viewed as being maladaptive, our data indicate that early life stress inoculation triggers developmental cascades of adaptive functioning, which may improve cognitive and emotional processing of stressors later in life. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/01664328 U6 - https://doi.org/10.1016/j.bbr.2010.05.018 SN - 0166-4328 ER - TY - JOUR A1 - Wiemann, Annika A1 - Andersen, Liselotte W. A1 - Berggren, Per A1 - Siebert, Ursula A1 - Benke, Harald A1 - Teilmann, Jonay A1 - Lockyer, Christina A1 - Pawliczka, Iwona A1 - Skora, Krysztof A1 - Roos, Aanna A1 - Lyrholm, Thomas A1 - Paulus, Kirsten B. A1 - Ketmaier, Valerio T1 - Mitochondrial Control Region and microsatellite analyses on harbour porpoise (Phocoena phocoena) unravel population differentiation in the Baltic Sea and adjacent waters N2 - The population status of the harbour porpoise (Phocoena phocoena) in the Baltic area has been a continuous matter of debate. Here we present the by far most comprehensive genetic population structure assessment to date for this region, both with regard to geographic coverage and sample size: 497 porpoise samples from North Sea, Skagerrak, Kattegat, Belt Sea, and Inner Baltic Sea were sequenced at the mitochondrial Control Region and 305 of these specimens were typed at 15 polymorphic microsatellite loci. Samples were stratified according to sample type (stranding vs. by- caught), sex, and season (breeding vs. non-breeding season). Our data provide ample evidence for a population split between the Skagerrak and the Belt Sea, with a transition zone in the Kattegat area. Among other measures, this was particularly visible in significant frequency shifts of the most abundant mitochondrial haplotypes. A particular haplotype almost absent in the North Sea was the most abundant in Belt Sea and Inner Baltic Sea. Microsatellites yielded a similar pattern (i.e., turnover in occurrence of clusters identified by STRUCTURE). Moreover, a highly significant association between microsatellite assignment and unlinked mitochondrial haplotypes further indicates a split between North Sea and Baltic porpoises. For the Inner Baltic Sea, we consistently recovered a small, but significant separation from the Belt Sea population. Despite recent arguments that separation should exceed a predefined threshold before populations shall be managed separately, we argue in favour of precautionary acknowledging the Inner Baltic porpoises as a separate management unit, which should receive particular attention, as it is threatened by various factors, in particular local fishery measures. Y1 - 2010 UR - http://www.springerlink.com/content/105709 U6 - https://doi.org/10.1007/s10592-009-0023-x SN - 1566-0621 ER - TY - JOUR A1 - Weithoff, Guntram A1 - Moser, Michael A1 - Kamjunke, Norbert A1 - Gaedke, Ursula A1 - Weisse, Thomas T1 - Lake morphometry and wind exposure may shape the plankton community structure in acidic mining lakes N2 - Acidic mining lakes (pH <3) are specific habitats exhibiting particular chemical and biological characteristics. The species richness is low and mixotrophy and omnivory are common features of the plankton food web in such lakes. The plankton community structure of mining lakes of different morphometry and mixing type but similar chemical characteristics (Lake 130, Germany and Lake Langau, Austria) was investigated. The focus was laid on the species composition, the trophic relationship between the phago-mixotrophic flagellate Ochromonas sp. and bacteria and the formation of a deep chlorophyll maximum along a vertical pH-gradient. The shallow wind-exposed Lake 130 exhibited a higher species richness than Lake Langau. This increase in species richness was made up mainly by mero-planktic species, suggesting a strong benthic/littoral - pelagic coupling. Based on the field data from both lakes, a nonlinear, negative relation between bacteria and Ochromonas biomass was found, suggesting that at an Ochromonas biomass below 50 mu g CL-1. the grazing pressure on bacteria is low and with increasing Ochromonas biomass bacteria decline. Furthermore, in Lake Langau, a prominent deep chlorophyll maximum was found with chlorophyll concentrations ca. 50 times higher than in the epilimnion which was build up by the euglenophyte Lepocinclis sp. We conclude that lake morphometry, and specific abiotic characteristics such as mixing behaviour influence the community structure in these mining lakes. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00759511 U6 - https://doi.org/10.1016/j.limno.2009.11.002 SN - 0075-9511 ER - TY - JOUR A1 - Voss, Martin A1 - Fechner, Lennart A1 - Walz, Bernd A1 - Baumann, Otto T1 - Calcineurin activity augments cAMP/PKA-dependent activation of V-ATPase in blowfly salivary glands N2 - We have examined the role of the Ca2+-dependent protein phosphatase 2B (calcineurin) in the regulation of the vacuolar H+-ATPase (V-ATPase) in blowfly salivary glands. In response to the neurohormone serotonin [5-hydroxytryptamine (5-HT)] and under the mediation of the cAMP/PKA signaling pathway, the secretory cells assemble and activate V-ATPase molecules at the apical membrane. We demonstrate that the inhibition of calcineurin activity by cyclosporin A, by FK- 506, or by prevention of the elevation of Ca2+ diminishes the 5-HT-induced assembly and activation of V-ATPase. The effect of calcineurin on V-ATPase is mediated by the cAMP/PKA signaling pathway, with calcineurin acting upstream of PKA, because 1) cyclosporin A does not influence the 8-(4-chlorophenylthio) adenosine-3',5'-cyclic monophosphate (8-CPT-cAMP)-induced activation of V-ATPase, and 2) the 5-HT-induced rise in cAMP is highly reduced in the presence of cyclosporin A. Moreover, a Ca2+ rise evoked by the sarco(endo) plasmic reticulum Ca2+-ATPase (SERCA) inhibitor cyclopiazonic acid leads to an increase in intracellular cAMP concentration and a calcineurin-mediated PKA- dependent activation of V-ATPase. We propose that calcineurin activity mediates cross talk between the inositol 1,4,5- trisphosphate/Ca2+ and the cAMP/PKA signaling pathways, thereby augmenting the 5-HT-induced rise in cAMP and thus the cAMP/PKA-mediated activation of V-ATPase. Y1 - 2010 UR - http://ajpcell.physiology.org/ U6 - https://doi.org/10.1152/ajpcell.00328.2009 SN - 0363-6143 ER - TY - JOUR A1 - Voelker, Camilla A1 - Gomez-Porras, Judith Lucia A1 - Becker, Dirk A1 - Hamamoto, Shin A1 - Uozumi, Nobuyuki A1 - Gambale, Franco A1 - Müller-Röber, Bernd A1 - Czempinski, Katrin A1 - Dreyer, Ingo T1 - Roles of tandem-pore K plus channels in plants : a puzzle still to be solved N2 - The group of voltage-independent K+ channels in Arabidopsis thaliana consists of six members, five tandem-pore channels (TPK1-TPK5) and a single K-ir-like channel (KCO3). All TPK/KCO channels are located at the vacuolar membrane except for TPK4, which was shown to be a plasma membrane channel in pollen. The vacuolar channels interact with 14-3-3 proteins (also called General Regulating Factors, GRFs), indicating regulation at the level of protein-protein interactions. Here we review current knowledge about these ion channels and their genes, and highlight open questions that need to be urgently addressed in future studies to fully appreciate the physiological functions of these ion channels. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=1435-8603 U6 - https://doi.org/10.1111/j.1438-8677.2010.00353.x SN - 1435-8603 ER - TY - JOUR A1 - Vincent, Uchechukwu E. A1 - Kenfack, Anatole A1 - Senthilkumar, Dharmapuri Vijayan A1 - Mayer, Dieter A1 - Kurths, Jürgen T1 - Current reversals and synchronization in coupled ratchets N2 - Current reversal is an intriguing phenomenon that has been central to recent experimental and theoretical investigations of transport based on ratchet mechanism. By considering a system of two interacting ratchets, we demonstrate how the coupling can be used to control the reversals. In particular, we find that current reversal that exists in a single driven ratchet system can ultimately be eliminated with the presence of a second ratchet. For specific coupling strengths a current-reversal free regime has been detected. Furthermore, in the fully synchronized state characterized by the coupling threshold k(th), a specific driving amplitude a(opt) is found for which the transport is optimum. Y1 - 2010 UR - http://pre.aps.org/ U6 - https://doi.org/10.1103/Physreve.82.046208 SN - 1539-3755 ER - TY - JOUR A1 - Vilca-Quispe, Augusto A1 - Ponce-Soto, Luis Alberto A1 - Winck, Flavia Vischi A1 - Marangoni, Sergio T1 - Isolation and characterization of a new serine protease with thrombin-like activity (TLBm) from the venom of the snake Bothrops marajoensis N2 - The thrombin-like serine protease TLBm from Bothrops marajoensis was isolated in one chromatographic step in reverse phase HPLC. Its molecular mass was 33239.95 Da, as based on the determined primary structure and confirmed experimentally by MALDI-TOF mass spectrometry (33332.5 Da) and it contains 12 half-cysteine residues. This TLBm exhibited high specificity for BA rho NA, Michaelis-Menten behavior with K-m 2.3 x 10(-1) M and the V-max 0.52 x 10(-1) nmoles rho-NA/lt/min for this substrate. TLBm also showed ability to coagulate bovine fibrinogen and was inhibited by soybean trypsin inhibitor, EDTA and S(Dm) from the serum of the species Didelphis marsupialis. The primary structure of TLBm showed the presence of His(45), Asp(103) and Ser(228) residues in the corresponding positions of the catalytic triad established in the serine proteases and Ser(228) are inhibited by phenylmethylsulfonyl fluoride (PMSF). Amino acid analysis showed a high content of Asp, Glu, Gly, Set, Ala and Pro as well as 12 half-cysteine residues and calculated pI of 6.47; TLBm presented 285 amino acid residues. In this work, we investigated the ability of TLBm to degrade fibrinogen and we observed that it is able to cause alpha- and beta-chain cleavage. Enzymatic as well as the platelet aggregation activities were strongly inhibited when incubated with PMSF, a specific inhibitor of serine protease. Also, TLBm induced platelet aggregation in washed and platelet-rich plasma, and in both cases, PMSF inhibited its activity. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00410101 U6 - https://doi.org/10.1016/j.toxicon.2009.11.006 SN - 0041-0101 ER - TY - JOUR A1 - Verlinden, Heleen A1 - Vleugels, Rut A1 - Marchal, Elisabeth A1 - Badisco, Liesbeth A1 - Tobback, Julie A1 - Pflüger, Hans-Joachim A1 - Blenau, Wolfgang A1 - Vanden Broeck, Jozef T1 - The cloning, phylogenetic relationship and distribution pattern of two new putative GPCR-type octopamine receptors in the desert locust (Schistocerca gregaria) N2 - The biogenic amine octopamine functions as a neuromodulator, neurotransmitter and neurohormone in insect nervous systems. It plays a prominent role in modulating multiple physiological and behavioural processes in invertebrates. Octopamine exerts its effects by binding to specific receptor proteins that belong to the superfamily of G protein-coupled receptors. We found two partial sequences of putative octopamine receptors in the desert locust Schistocerca gregaria (SgOct alpha R and SgOct beta R) and investigated their transcript levels in males and females of both phases and during the transition between long-term solitarious and gregarious locusts. The transcript levels of SgOctaR are the highest in the central nervous system, whereas those of SgOct beta R are the highest in the flight muscles, followed by the central nervous system. Both SgOct alpha R and SgOct beta R show higher transcript levels in long-term gregarious locusts as compared to solitarious ones. The rise of SgOct beta R transcript levels already appears during the first 4 h of gregarisation, during which also the behavioural changes take place. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00221910 U6 - https://doi.org/10.1016/j.jinsphys.2010.03.003 SN - 0022-1910 ER - TY - JOUR A1 - Verlinden, Heleen A1 - Vleugels, Rut A1 - Marchal, Elisabeth A1 - Badisco, Liesbeth A1 - Pflüger, Hans-Joachim A1 - Blenau, Wolfgang A1 - Vanden Broeck, Jozef T1 - The role of octopamine in locusts and other arthropods N2 - The biogenic amine octopamine and its biological precursor tyramine are thought to be the invertebrate functional homologues of the vertebrate adrenergic transmitters. Octopamine functions as a neuromodulator, neurotransmitter and neurohormone in insect nervous systems and prompts the whole organism to "dynamic action". A growing number of studies suggest a prominent role for octopamine in modulating multiple physiological and behavioural processes in invertebrates, as for example the phase transition in Schistocerca gregaria. Both octopamine and tyramine exert their effects by binding to specific receptor proteins that belong to the superfamily of G protein-coupled receptors. Since these receptors do not appear to be present in vertebrates, they may present very suitable and specific insecticide and acaricide targets. (C) 2010 Elsevier Ltd. All rights reserved. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00221910 U6 - https://doi.org/10.1016/j.jinsphys.2010.05.018 SN - 0022-1910 ER - TY - JOUR A1 - Vater, Marianne A1 - Foeller, Elisabeth A1 - Mora, Emanuel C. A1 - Coro, Frank A1 - Russell, Ian J. A1 - Kössl, Manfred T1 - Postnatal maturation of primary auditory cortex in the mustached bat, pteronotus parnellii N2 - The primary auditory cortex (AI) of adult Pteronotus parnellii features a foveal representation of the second harmonic constant frequency (CF2) echolocation call component. In the corresponding Doppler-shifted constant frequency (DSCF) area, the 61 kHz range is over-represented for extraction of frequency-shift information in CF2 echoes. To assess to which degree AI postnatal maturation depends on active echolocation or/and reflects ongoing cochlear maturation, cortical neurons were recorded in juveniles up to postnatal day P29, before the bats are capable of active foraging.At P1-2, neurons in posterior AI are tuned sensitively to low frequencies (22-45 dB SPL, 28-35 kHz). Within the prospective DSCF area, neurons had insensitive responses (>60 dB SPL) to frequencies <40 kHz and lacked sensitive tuning curve tips. Up to P10, when bats do not yet actively echolocate, tonotopy is further developed and DSCF neurons respond to frequencies of 51-57 kHz with maximum tuning sharpness (Q(10dB)) of 57. Between P11 and 20, the frequency representation in AI includes higher frequencies anterior and dorsal to the DSCF area. More multipeaked neurons (33%) are found than at older age. In the oldest group, DSCF neurons are tuned to frequencies close to 61 kHz with Q(10dB) values <= 212, and threshold sensitivity, tuning sharpness and cortical latencies are adult-like. The data show that basic aspects of cortical tonotopy are established before the bats actively echolocate. Maturation of tonotopy, increase of tuning sharpness, and upward shift in the characteristic frequency of DSCF neurons appear to strongly reflect cochlear maturation. Y1 - 2010 UR - http://jn.physiology.org/ U6 - https://doi.org/10.1152/jn.00517.2009 SN - 0022-3077 ER - TY - JOUR A1 - Valleriani, Angelo A1 - Ignatova, Zoya A1 - Nagar, Apoorva A1 - Lipowsky, Reinhard T1 - Turnover of messenger RNA : polysome statistics beyond the steady state N2 - The interplay between turnover or degradation and ribosome loading of messenger RNA (mRNA) is studied theoretically using a stochastic model that is motivated by recent experimental results. Random mRNA degradation affects the statistics of polysomes, i.e., the statistics of the number of ribosomes per mRNA as extracted from cells. Since ribosome loading of newly created mRNA chains requires some time to reach steady state, a fraction of the extracted mRNA/ ribosome complexes does not represent steady state conditions. As a consequence, the mean ribosome density obtained from the extracted complexes is found to be inversely proportional to the mRNA length. On the other hand, the ribosome density profile shows an exponential decrease along the mRNA for prokaryotes and becomes uniform in eukaryotic cells. Copyright (C) EPLA, 2010 Y1 - 2010 UR - http://iopscience.iop.org/0295-5075/ U6 - https://doi.org/10.1209/0295-5075/89/58003 SN - 0295-5075 ER - TY - JOUR A1 - Tschöpe, Okka A1 - Tielbörger, Katja T1 - The role of successional stage and small-scale disturbance for establishment of pioneer grass Corynephorus canescens N2 - Question Which mechanisms promote the maintenance of the protected pioneer grass Corynephorus canescens in a mosaic landscape? Which are the interactive effects of small-scale disturbances, successional stage and year-to-year variation on early establishment probabilities of C. canescens? Location Brandenburg, NE Germany. Methods We measured emergence and survival rates over 3 yr in a sowing-experiment conducted in three successional stages (C. canescens- dominated site, ruderal forb site and pioneer forest) under two different regimes of mechanical ground disturbance (disturbed versus undisturbed control). Results Overall, disturbance led to higher emergence in a humid year and to lower emergence in a very dry year. Apparently, when soil moisture was sufficient, the main factor limiting C. canescens' establishment was competition, while in the dry year, water became the limiting factor. Survival rates were not affected by disturbance. In humid years, C. canescens emerged in higher numbers in open successional stages while in the dry year, emergence rates were higher in late stages, suggesting an important role of late successional stages for the persistence of C. canescens. Conclusions Our results suggest that small-scale disturbances can promote germination of C. canescens. However, disturbances should be carefully planned. The optimal strategy for promoting C. canescens is to apply disturbances just before seed dispersal and not during dry years. At the landscape scale, a mosaic of different vegetation types is beneficial for the protected pioneer grass as facilitation by late-successional species may be an important mechanism for the persistence of C. canescens, especially in dry years. Y1 - 2010 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1654-109X.2009.01072.x/full U6 - https://doi.org/10.1111/j.1654-109X.2009.01072.x SN - 1402-2001 ER - TY - JOUR A1 - Trauth, Martin H. A1 - Maslin, Mark A. A1 - Deino, Alan L. A1 - Junginger, Annett A1 - Lesoloyia, Moses A1 - Odada, Eric O. A1 - Olago, Daniel O. A1 - Olaka, Lydia A. A1 - Strecker, Manfred A1 - Tiedemann, Ralph T1 - Human evolution in a variable environment : the amplifier lakes of Eastern Africa N2 - The development of rise Cenozoic East African Rift System (EARS) profoundly re-shaped the landscape and significantly increased the amplitude of short-term environmental response to climate variation. In particular, the development of amplifier lakes in rift basins after three million years ago significantly contributed to this exceptional sensitivity of East Africa to climate change compared to elsewhere on the African continent. Amplifier lakes are characterized by tectonically-formed graben morphologies in combination with an extreme contrast between high precipitation in the elevated parts of the catchment and high evaporation in the lake area. Such amplifier lakes respond rapidly to moderate, precessional-forced climate shifts, and as they do so apply dramatic environmental pressure to the biosphere. Rift basins, when either extremely dry or lake-filled, form important barriers for migration, mixing and competition of different populations of animals and hominins. Amplifier lakes link long-term, high-amplitude tectonic processes and short-term environmental fluctuations. East Africa may have become the place where early humans evolved as a consequence of this strong link between different time scales. (C) 2010 Elsevier Ltd. All rights reserved. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/02773791 U6 - https://doi.org/10.1016/j.quascirev.2010.07.007 SN - 0277-3791 ER - TY - JOUR A1 - Tirok, Katrin A1 - Gaedke, Ursula T1 - Internally driven alternation of functional traits in a multispecies predator-prey system N2 - The individual functional traits of different species play a key role for ecosystem function in aquatic and terrestrial systems. We modeled a multispecies predator-prey system with functionally different predator and prey species based on observations of the community dynamics of ciliates and their algal prey in Lake Constance. The model accounted for differences in predator feeding preferences and prey susceptibility to predation, and for the respective trade-offs. A low food demand of the predator was connected to a high food selectivity, and a high growth rate of the prey was connected to a high vulnerability to grazing. The data and the model did not show standard uniform predator- prey cycles, but revealed both complex dynamics and a coexistence of predator and prey at high biomass levels. These dynamics resulted from internally driven alternations in species densities and involved compensatory dynamics between functionally different species. Functional diversity allowed for ongoing adaptation of the predator and prey communities to changing environmental conditions such as food composition and grazing pressure. The trade-offs determined whether compensatory or synchronous dynamics occurred which influence the variability at the community level. Compensatory dynamics were promoted by a joint carrying capacity linking the different prey species which is particularly relevant at high prey biomasses, i.e., when grazers are less efficient. In contrast, synchronization was enhanced by the coupling of the different predator and prey species via common feeding links, e.g., by a high grazing pressure of a nonselective predator. The communities had to be functionally diverse in terms of their trade-offs and their traits to yield compensatory dynamics. Rather similar predator species tended to cycle synchronously, whereas profoundly different species did not coexist. Compensatory dynamics at the community level thus required intermediately strong tradeoffs for functional traits in both predators and their prey. Y1 - 2010 UR - http://esapubs.org/esapubs/journals/ecology.htm U6 - https://doi.org/10.1890/09-1052.1 SN - 0012-9658 ER - TY - JOUR A1 - Timmer, Marco A1 - Theiss, Hans A1 - Jürchott, Katrin A1 - Ries, Christian A1 - Paron, Igor A1 - Franz, W. A1 - Selbig, Joachim A1 - Guo, Ketai A1 - Tonn, Jörg A1 - Schichor, Christian T1 - Stromal-Derived Factor 1a (Sdf-1a), a Homing Factor for Mesenchymal Progenitor Cells, Is Elevated in Tumor Tissue and Plasma of Glioma Patients N2 - Malignant gliomas are a fatal disease lacking sufficient possibilities for early diagnosis and chemical markers to detect remission or relapse. The recruitment of progenitor cells such as mesenchymal stem cells (MSC) is a main feature of gliomas. Stromal cell-derived factor-1 (SDF-1), a chemokine produced in glioma cell lines, enhances migration in MSC and has been associated with cell survival and apoptosis in gliomas. Therefore, this study was performed to evaluate (i) whether SDF-1 and its receptors are expressed in human malignant gliomas in situ and (ii) if SDF-1 might potentially play a role in recruiting MSCs into human glioma. In glioblastoma tissue, immunohistochemistry revealed that SDF-1 and its receptor CXCR4 are expressed in regions of angiogenesis and necrosis, and qPCR showed that SDF-1 is elevated. Public expression data indicated that CXCR4 was upregulated. The latter data also illustrate that SDF-1 could be up- or downregulated in glioma compared to normal brain in a transcript-specific manner. In plasma, SDF-1 is elevated in glioma patients. The level is reduced by both dexamethasone intake and surgery. Dexamethasone also decreased SDF-1 production in cells in vitro. The undirected migration of human MSC (hMSC) was not enhanced by the addition of SDF-1. However, SDF-1 stimulated directed invasion of hMSC in a dose-dependent manner. Taken together, we show that SDF-1 is a potent chemoattractant of progenitor cells such as hMSCs and that its expression is elevated in glioma tissue, which results in elevated SDF-1 levels in the patient's plasma samples with concomittant decrease after tumor resection. The fact that elevated SDF-1 plasma levels are significantly decreased after tumor surgery could be a first hint that SDF-1 might act as tumor marker for malignant gliomas in order to detect disease progression or remission, respectively. Y1 - 2010 UR - http://neuro-oncology.oxfordjournals.org/ SN - 1522-8517 ER - TY - JOUR A1 - Thamm, Markus A1 - Balfanz, Sabine A1 - Scheiner, Richarda A1 - Baumann, Arnd A1 - Blenau, Wolfgang T1 - Characterization of the 5-HT1A receptor of the honeybee (Apis mellifera) and involvement of serotonin in phototactic behavior N2 - Serotonin plays a key role in modulating various physiological and behavioral processes in both protostomes and deuterostomes. The vast majority of serotonin receptors belong to the superfamily of G-protein-coupled receptors. We report the cloning of a cDNA from the honeybee (Am5-ht1A) sharing high similarity with members of the 5-HT1 receptor class. Activation of Am5-HT1A by serotonin inhibited the production of cAMP in a dose-dependent manner (EC50 = 16.9 nM). Am5-HT1A was highly expressed in brain regions known to be involved in visual information processing. Using in vivo pharmacology, we could demonstrate that Am5-HT1A receptor ligands had a strong impact on the phototactic behavior of individual bees. The data presented here mark the first comprehensive study-from gene to behavior-of a 5-HT1A receptor in the honeybee, paving the way for the eventual elucidation of additional roles of this receptor subtype in the physiology and behavior of this social insect. Y1 - 2010 UR - http://www.springerlink.com/content/101193 U6 - https://doi.org/10.1007/s00018-010-0350-6 SN - 1420-682X ER - TY - JOUR A1 - Thalhammer, Anja A1 - Hundertmark, Michaela A1 - Popova, Antoaneta V. A1 - Seckler, Robert A1 - Hincha, Dirk K. T1 - Interaction of two intrinsically disordered plant stress proteins (COR15A and COR15B) with lipid membranes in the dry state N2 - COR15A and COR15B form a tandem repeat of highly homologous genes in Arabidopsis thaliana. Both genes are highly cold induced and the encoded proteins belong to the Pfam LEA_4 group (group 3) of the late embryogenesis abundant (LEA) proteins. Both proteins were predicted to be intrinsically disordered in solution. Only COR15A has previously been characterized and it was shown to be localized in the soluble stroma fraction of chloroplasts. Ectopic expression of COR15A in Arabidopsis resulted in increased freezing tolerance of both chloroplasts after freezing and thawing of intact leaves and of isolated protoplasts frozen and thawed in vitro. In the present study we have generated recombinant mature COR15A and COR15B for a comparative study of their structure and possible function as membrane protectants. CD spectroscopy showed that both proteins are predominantly unstructured in solution and mainly a-helical after drying. Both proteins showed similar effects on the thermotropic phase behavior of dry liposomes. A decrease in the gel to liquid-crystalline phase transition temperature depended on both the unsaturation of the fatty acyl chains and lipid headgroup structure. FTIR spectroscopy indicated no strong interactions between the proteins and the lipid phosphate and carbonyl groups, but significant interactions with the galactose headgroup of the chloroplast lipid monogalactosyldiacylglycerol. These findings were rationalized by modeling the secondary structure of COR15A and COR15B. Helical wheel projection indicated the presence of amphipathic a-helices in both proteins. The helices lacked a clear separation of positive and negative charges on the hydrophilic face, but contained several hydroxylated amino acids. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00052736 U6 - https://doi.org/10.1016/j.bbamem.2010.05.015 SN - 0005-2736 ER - TY - JOUR A1 - Sunna, Anwar T1 - Modular organisation and functional analysis of dissected modular beta-mannanase CsMan26 from Caldicellulosiruptor Rt8B.4 N2 - CsMan26 from Caldicellulosiruptor strain Rt8.B4 is a modular beta-mannanase consisting of two N-terminal family 27 carbohydrate-binding modules (CBMs), followed by a family 35 CBM and a family 26 glycoside hydrolase catalytic module (mannanase). A functional dissection of the full-length CsMan26 and a comprehensive characterisation of the truncated derivatives were undertaken to evaluate the role of the CBMs. Limited proteolysis was used to define biochemically the boundaries of the different structural modules in CsMan26. The full-length CsMan26 and three truncated derivatives were produced in Escherichia coli, purified and characterised. The systematic removal of the CBMs resulted in a decrease in the optimal temperature for activity and in the overall thermostability of the derivatives. Kinetic experiments indicated that the presence of the mannan-specific family 27 CBMs increased the affinity of the enzyme towards the soluble galactomannan substrate but this was accompanied by lower catalytic efficiency. The full-length CsMan26 and its truncated derivatives were unable to hydrolyse mannooligosaccharides with degree of polymerisation (DP) of three or less. The major difference in the hydrolysis pattern of larger mannooligosaccharides (DP > 3) by the derivatives was determined by their abilities to further hydrolyse the intermediate sugar mannotetraose. Y1 - 2010 UR - http://www.springerlink.com/content/100457 U6 - https://doi.org/10.1007/s00253-009-2242-y SN - 0175-7598 ER - TY - JOUR A1 - Steinfath, Matthias A1 - Strehmel, Nadine A1 - Peters, Rolf A1 - Schauer, Nicolas A1 - Groth, Detlef A1 - Hummel, Jan A1 - Steup, Martin A1 - Selbig, Joachim A1 - Kopka, Joachim A1 - Geigenberger, Peter A1 - Dongen, Joost T. van T1 - Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach N2 - Biomarkers are used to predict phenotypical properties before these features become apparent and, therefore, are valuable tools for both fundamental and applied research. Diagnostic biomarkers have been discovered in medicine many decades ago and are now commonly applied. While this is routine in the field of medicine, it is of surprise that in agriculture this approach has never been investigated. Up to now, the prediction of phenotypes in plants was based on growing plants and assaying the organs of interest in a time intensive process. For the first time, we demonstrate in this study the application of metabolomics to predict agronomic important phenotypes of a crop plant that was grown in different environments. Our procedure consists of established techniques to screen untargeted for a large amount of metabolites in parallel, in combination with machine learning methods. By using this combination of metabolomics and biomathematical tools metabolites were identified that can be used as biomarkers to improve the prediction of traits. The predictive metabolites can be selected and used subsequently to develop fast, targeted and low-cost diagnostic biomarker assays that can be implemented in breeding programs or quality assessment analysis. The identified metabolic biomarkers allow for the prediction of crop product quality. Furthermore, marker-assisted selection can benefit from the discovery of metabolic biomarkers when other molecular markers come to its limitation. The described marker selection method was developed for potato tubers, but is generally applicable to any crop and trait as it functions independently of genomic information. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=1467-7644 U6 - https://doi.org/10.1111/j.1467-7652.2010.00516.x SN - 1467-7644 ER - TY - JOUR A1 - Steinberg, Christian E. W. A1 - Ouerghemmi, Nadia A1 - Herrmann, Steffen A1 - Bouchnak, Rihab A1 - Timofeyev, Maxim A. A1 - Menzel, Ralph T1 - Stress by poor food quality and exposure to humic substances : daphnia magna responds with oxidative stress, lifespan extension, but reduced offspring numbers N2 - In freshwater systems, many abiotic and biotic factors determine the natural fluctuation of Daphnia spec. populations: climatic and water quality parameters, quantitative and qualitative food quality and quantity, predation, and humic substances. Many factors/stressors act in concert. In this contribution, we supplied Daphnia magna with two different diets (chlorococcal alga Pseudokirchneriella subcapitata and baker's yeast) fed ad libitum and exposed it to an environmentally realistic concentration of humic substances (HSs). Exposure to HSs caused a transcriptionally controlled stress response with studied genes; cat and hsp60, for the latter partial sequences have been identified. Furthermore, the exposure to HSs reduced the antioxidant capacity. Yet, a much stronger oxidative stress is caused by feeding yeast, which reduced the anti-oxidative capacity to values of approximately 50% of the green algal diet. This reduction is most likely due to the yeast's cell wall to resist digestion rather than to the elemental ratio or deficiency in long-chained unsaturated fatty acids, because both diets were deficient in fatty acids with back bones of more than 20 C-atoms. We assume that the biochemical machinery in the gut continuously activated oxygen to cleave the yeast's cell wall and, hence, reduced the antioxidative capacity of the animals. Neither the analyzed oxidant, H2O2, nor the antioxidants, total apparent ascorbic acid nor free proline, reflected the oxidative stress situations properly. In addition to the stress, HS exposure extended the mean lifespan of algae-fed D. magna, but at the expense of offspring numbers; so did also the pure yeast diet as compared to the algae diet. The first lifespan extension can be explained by the potential of HSs to block the pathway via the insulin-like growth factor 1 (IGF), whereas the second matches the, in aging papers, well described, but mechanistically poorly understood caloric restriction. Yeast-fed animals, exposed to HSs changed the energy allocation by reducing life span, but increasing offspring numbers. With the lifespan and offspring numbers, ecologically relevant parameters are differently affected by the simultaneous action of two environmentally relevant stressors. Y1 - 2010 UR - http://www.springerlink.com/content/100271 U6 - https://doi.org/10.1007/s10750-010-0334-4 SN - 0018-8158 ER - TY - JOUR A1 - Stein, Claudia A1 - Unsicker, Sybille B. A1 - Kahmen, Ansgar A1 - Wagner, Markus A1 - Audorff, Volker A1 - Auge, Harald A1 - Prati, Daniel A1 - Weisser, Wolfgang W. T1 - Impact of invertebrate herbivory in grasslands depends on plant species diversity N2 - Invertebrate herbivores are ubiquitous in most terrestrial ecosystems, and theory predicts that their impact on plant community biomass should depend on diversity and productivity of the associated plant communities. To elucidate general patterns in the relationship between invertebrate herbivory, plant diversity, and productivity, we carried out a long-term herbivore exclusion experiment at multiple grassland sites in a mountainous landscape of central Germany. Over a period of five years, we used above-and belowground insecticides as well as a molluscicide to manipulate invertebrate herbivory at 14 grassland sites, covering a wide range of plant species diversity (13-38 species/m(2)) and aboveground plant productivity (272-1125 g.m(-2).yr(-1)), where plant species richness and productivity of the sites were not significantly correlated. Herbivore exclusion had significant effects on the plant communities: it decreased plant species richness and evenness, and it altered plant community composition. In particular, exclusion of belowground herbivores promoted grasses at the expense of herbs. In contrast to our expectation, herbivore effects on plant community biomass were not influenced by productivity. However, effect size of invertebrate herbivores was negatively correlated with plant diversity of the grasslands: the effect of herbivory on biomass tended to be negative at sites of high diversity and positive at sites of low diversity. In general, the effects of aboveground herbivores were relatively small as compared to belowground herbivores, which were important drivers of plant community composition. Our study is the first to show that variation in the effects of invertebrate herbivory on plant communities across a landscape is significantly influenced by plant species richness. Y1 - 2010 UR - http://esapubs.org/esapubs/journals/ecology.htm U6 - https://doi.org/10.1890/09-0600.1 SN - 0012-9658 ER - TY - JOUR A1 - Staab, Paul R. A1 - Walossek, Jörg A1 - Nellessen, David A1 - Grünberg, Raik A1 - Arndt, Katja Maren A1 - Müller, Kristian M. T1 - SynBioWave : a real-time communication platform for molecular and synthetic biology N2 - Synthetic Biology is advanced by many users and relies on the assembly of genetic elements to devices, systems and finally genomes. SynBioWave is a software suite that enables multiple distributed users to analyze and construct genetic parts in real-time collaboration. It builds on Google Wave and provides an extensible robot-robot-user communication framework, a menu driven user interface, biological data handling including DAS and an internal database communication. We demonstrate its use by implementing robots for gene-data retrieval, manipulation and display. The initial development of SynBioWave demonstrates the power of the underlying Google Wave protocol for Synthetic Biology and lays the foundation for continuous and user-friendly extensions. Specialized wave-robots with a manageable set of capabilities will divide and conquer the complex task of creating a genome in silico. Y1 - 2010 UR - http://bioinformatics.oxfordjournals.org/ U6 - https://doi.org/10.1093/bioinformatics/btq518 SN - 1367-4803 ER - TY - JOUR A1 - Spricigo, Roberto A1 - Richter, Claudia A1 - Leimkühler, Silke A1 - Gorton, Lo A1 - Scheller, Frieder W. A1 - Wollenberger, Ursula T1 - Sulfite biosensor based on osmium redox polymer wired sulfite oxidase N2 - A biosensor, based on a redoxactive osmium polymer and sulfite oxidase on screen-printed electrodes, is presented here as a promising method for the detection of sulfite. A catalytic oxidative current was generated when a sample containing sulfite was pumped over the carbon screen-printed electrode modified with osmium redox polymer wired sulfite oxidase. A stationary value was reached after approximately 50 s and a complete measurement lasted no more than 3 min. The electrode polarized at -0.1 V (vs. Ag vertical bar AgCl 1M KCl) permits minimizing the influence of interfering substances, since these compounds can be unspecific oxidized at higher potentials. Because of the good stability of the protein film on the electrode surface, a well functioning biosensor-flow system was possible to construct. The working stability and reproducibility were further enhanced by the addition of bovine serum albumin generating a more long-term stable and biocompatible protein environment. The optimized biosensor showed a stable signal for more than a week of operation and a coefficient of variation of 4.8% for 12 successive measurements. The lower limit of detection of the sensor was 0.5 mu M sulfite and the response was linear until 100 mu M. The high sensitivity permitted a 1:500 dilution of wine samples. The immobilization procedure and the operational conditions granted minimized interferences. Additionally, repeating the immobilization procedure to form several layers of wired SO further increased the sensitivity of such a sensor. Finally. the applicability of the developed sulfite biosensor was tested on real samples, such as white and red wines. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/09277757 U6 - https://doi.org/10.1016/j.colsurfa.2009.09.001 SN - 0927-7757 ER - TY - JOUR A1 - Spijkerman, Elly T1 - High Photosynthetic Rates under a Colimitation for Inorganic Phosphorus and Carbon Dioxide1 N2 - Inorganic phosphorus (P-i) and carbon (here, CO2) potentially limit the photosynthesis of phytoplankton simultaneously (colimitation). A single P-i limitation generally reduces photosynthesis, but the effect of a colimitation is not known. Therefore, photosynthesis was measured under P-i-limited conditions and high and low CO2, and osmo-mixotrophic (i.e., growth in the presence of glucose) conditions that result in colimiting conditions in some cases. The green alga Chlamydomonas acidophila Negoro was used as a model organism because low P-i and CO2 concentrations likely influence its photosynthetic rates in its natural environment. Results showed a decreasing maximum photosynthetic rate (P-max) and maximum quantum yield (Theta(II)) with increasing P-i limitation. In addition, a P-i limitation enhanced the relative contribution of dark respiration to P-max (R-d:P-max) but did not influence the compensation light intensity. P-max positively correlated with the cellular RUBISCO content. Osmo-mixotrophic conditions resulted in similar P-max, Theta(II), and RUBISCO content as in high-CO2 cultures. The low-CO2 cultures were colimited by P-i and CO2 and had the highest P-max, Theta(II), and RUBISCO content. Colimiting conditions for P-i and CO2 in C. acidophila resulted in an enhanced mismatch between photosynthesis and growth rates compared to the effect of a single P- i limitation. Primary productivity of colimited phytoplankton could thus be misinterpreted. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0022-3646 U6 - https://doi.org/10.1111/j.1529-8817.2010.00859.x SN - 0022-3646 ER - TY - JOUR A1 - Sperfeld, Erik A1 - Schmidtke, Andrea A1 - Gaedke, Ursula A1 - Weithoff, Guntram T1 - Productivity, herbivory, and species traits rather than diversity influence invasibility of experimental phytoplankton communities N2 - Biological invasions are a major threat to natural biodiversity; hence, understanding the mechanisms underlying invasibility (i.e., the susceptibility of a community to invasions by new species) is crucial. Invasibility of a resident community may be affected by a complex but hitherto hardly understood interplay of (1) productivity of the habitat, (2) diversity, (3) herbivory, and (4) the characteristics of both invasive and resident species. Using experimental phytoplankton microcosms, we investigated the effect of nutrient supply and species diversity on the invasibility of resident communities for two functionally different invaders in the presence or absence of an herbivore. With increasing nutrient supply, increased herbivore abundance indicated enhanced phytoplankton biomass production, and the invasion success of both invaders showed a unimodal pattern. At low nutrient supply (i.e., low influence of herbivory), the invasibility depended mainly on the competitive abilities of the invaders, whereas at high nutrient supply, the susceptibility to herbivory dominated. This resulted in different optimum nutrient levels for invasion success of the two species due to their individual functional traits. To test the effect of diversity on invasibility, a species richness gradient was generated by random selection from a resident species pool at an intermediate nutrient level. Invasibility was not affected by species richness; instead, it was driven by the functional traits of the resident and/or invasive species mediated by herbivore density. Overall, herbivory was the driving factor for invasibility of phytoplankton communities, which implies that other factors affecting the intensity of herbivory (e.g., productivity or edibility of primary producers) indirectly influence invasions. Y1 - 2010 UR - http://springerlink.metapress.com/content/100458/ U6 - https://doi.org/10.1007/s00442-010-1594-4 SN - 0029-8549 ER - TY - JOUR A1 - Silva-Iturriza, Adriana A1 - Ketmaier, Valerio A1 - Tiedemann, Ralph T1 - Mitochondrial DNA suggests multiple colonizations of central Philippine islands (Boracay, Negros) by the sedentary Philippine bulbul Hypsipetes philippinus guimarasensis (Aves) N2 - In this study, we have used fragments of three mitochondrial genes (Control Region, CR; transfer RNA for methionine, tRNA-Met; NADH dehydrogenase subunit 2, ND2 for a total of 1066 bp) to reconstruct the phylogeographic history of the endemic Philippine bulbul (Hypsipetes philippinus) at the scale of the central area of the Philippine archipelago. The study includes two of the five recognized subspecies (guimarasensis and mindorensis), 7 populations and 58 individuals. Multiple phylogenetic and network analyses support the existence of two reciprocally monophyletic maternal lineages corresponding to the two named subspecies. Molecular clock estimates indicate that the split between the two subspecies is consistent with the Pleistocene geological history of the archipelago. Patterns of relationships within guimarasensis are biogeographically less clear. Here, a combination of vicariance and dispersal needs to be invoked to reconcile the molecular data with the geographical origin of samples. In particular, the two islands Boracay and Negros host mitochondrial lineages that do not form monophyletic clusters. Our genetic data suggest multiple independent colonization events for these locations. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0947-5745 U6 - https://doi.org/10.1111/j.1439-0469.2010.00566.x SN - 0947-5745 ER - TY - JOUR A1 - Sellrie, Frank A1 - Beck, Michael A1 - Hildebrandt, Niko A1 - Micheel, Burkhard T1 - A homogeneous time-resolved fluoroimmunoassay (TR-FIA) using antibody mediated luminescence quenching N2 - The determination of low-molecular weight substances (haptens) is demonstrated with a homogeneous time-resolved immunoassay using antibody-induced luminescence quenching. Our novel assay technology uses the newly developed monoclonal antibody (G24-BA9) to quench the luminescence of europium trisbipyridine (EuTBP). We performed a competitive biotin immunoassay including an EuTBP-biotin conjugate, the anti-EuTBP antibody G24-BA9 and streptavidin as assay components. Steric hindrance allows only the binding of either G24-BA9 (to the EuTBP moiety) or streptavidin (to the biotin moiety) to the EuTBP-biotin conjugate. Addition of the analyte biotin resulted in the binding of streptavidin to biotin and a concomitant preferred binding of G24-BA9 to EuTBP-biotin. Since G24-BA9 quenches the luminescence of EuTBP within the conjugate, the luminescence signal could be used to indicate and quantify the presence of free biotin in the system. All experiments were carried out in solution in the presence of 5% serum demonstrating the possibility of using our novel assay for a very fast determination of low molecular weight substances in biological fluids. Y1 - 2010 UR - http://www.rsc.org/Publishing/Journals/AY/Index.asp U6 - https://doi.org/10.1039/C0ay00306a SN - 1759-9660 ER - TY - JOUR A1 - Schwarzer, Christian A1 - Huamani, Fatima Cßceres A1 - Cano, Asunción A1 - La Torre, María I. La A1 - Weigend, Maximilian T1 - 400 years for long-distance dispersal and divergence in the northern atacama desert : insights from the Huaynaputina pumice slopes of Moquegua, Peru N2 - The Huaynaputina eruption (1600 AD, Moquegua, S Peru) in the northern Atacama Desert denuded the Ornate area of all vegetation and deposited deep pumice layers. Data on the flora, climate and soil characteristics of these slopes near Ornate at 1600-2600 m a.s.l. are provided. Fifty-nine angiosperm species established themselves on the pumice slopes in the past ca. 400 years, with the bulk of the small and herbaceous species and several species new records for Peru. Three Ornate sites were sampled in both a dry and a wet year and species numbers differed widely (14 versus 45 spp.). Among areas compared floristic composition is most similar to the Lomas de Tacna, and has less in common with geographically closer Lomas or Sierra formations. Nine species represent highly disjunct populations (200->700 km) from their nearest known living populations in central Peru, Chile, or Argentina/Bolivia and appear to have reached the area via long-distance dispersal. Abiotic conditions may have played an important role in limiting the establishment of species from the neighboring vegetation. Four taxa on the pumice slopes show clear morphological differences to populations elsewhere, two of them may represent neoendemics of the Ornate pumice, indicating rapid morphological divergence. (C) 2010 Elsevier Ltd. All rights reserved. Y1 - 2010 U6 - https://doi.org/10.1016/j.jaridenv.2010.05.034 SN - 0140-1963 ER - TY - JOUR A1 - Schmidtke, Andrea A1 - Rottstock, Tanja A1 - Gaedke, Ursula A1 - Fischer, Markus T1 - Plant community diversity and composition affect individual plant performance N2 - Effects of plant community diversity on ecosystem processes have recently received major attention. In contrast, effects of species richness and functional richness on individual plant performance, and their magnitude relative to effects of community composition, have been largely neglected. Therefore, we examined height, aboveground biomass, and inflorescence production of individual plants of all species present in 82 large plots of the Jena Experiment, a large grassland biodiversity experiment in Germany. These plots differed in species richness (1-60), functional richness (1-4), and community composition. On average, in more species-rich communities, plant individuals grew taller, but weighed less, were less likely to flower, and had fewer inflorescences. In plots containing legumes, non-legumes were higher and weighed more than in plots without legumes. In plots containing grasses, non-grasses were less likely to flower than in plots without grasses. This indicates that legumes positively and grasses negatively affected the performance of other species. Species richness and functional richness effects differed systematically between functional groups. The magnitude of the increase in plant height with increasing species richness was greatest in grasses and was progressively smaller in legumes, small herbs, and tall herbs. Individual aboveground biomass responses to increasing species richness also differed among functional groups and were positive for legumes, less pronouncedly positive for grasses, negative for small herbs, and more pronouncedly negative for tall herbs. Moreover, these effects of species richness differed strongly between species within these functional groups. We conclude that individual plant performance largely depends on the diversity of the surrounding community, and that the direction and magnitude of the effects of species richness and functional richness differs largely between species. Our study suggests that diversity of the surrounding community needs to be taken into account when interpreting drivers of the performance of individual plants. Y1 - 2010 UR - http://www.springerlink.com/content/067x6r4n36w12184/fulltext.html U6 - https://doi.org/10.1007/s00442-010-1688-z SN - 0029-8549 ER - TY - JOUR A1 - Schmidtke, Andrea A1 - Gaedke, Ursula A1 - Weithoff, Guntram T1 - A mechanistic basis for underyielding in phytoplankton communities N2 - Species richness has been shown to increase biomass production of plant communities. Such overyielding occurs when a community performs better than its component monocultures due to the complementarity or dominance effect and is mostly detected in substrate-bound plant communities (terrestrial plants or submerged macrophytes) where resource use complementarity can be enhanced due to differences in rooting architecture and depth. Here, we investigated whether these findings arc generalizeable for free-floating phytoplankton with little potential for spatial differences in resource use. We performed aquatic microcosm experiments with eight phytoplankton species belonging to four functional groups to determine the manner in which species and community biovolume varies in relation to the number of functional groups and hypothesized that an increasing number of functional groups within a community promotes overyielding. Unexpectedly, we did not detect overyielding in any algal community. Instead. total community biovolume tended to decrease with all increasing, number of functional groups. This underyielding was mainly caused by the negative dominance effect that originated from a trade-off between growth rate and filial biovolume. In monoculture, slow-groing species built up higher biovolumes that fast-growing ones, whereas in mixture a fast-growing but low-productive species monopolized most of the nutrients and prevented competing species from developing high biovolumes expected from monocultures. Our results indicated that the Magnitude of the community biovolume was largely determined by the identify of one species. Functional diversity and resource use complementarity were of minor Importance among free-floating phytoplankton, possibly reflecting the lack of spatially heterogeneous resource distribution. As a consequence, biodiversity-ecosystem functioning relationships may not be easily generalizeable from substrate-bound plant to phytoplankton communities and vice versa. Y1 - 2010 UR - http://www.esajournals.org/doi/full/10.1890/08-2370.1 SN - 0012-9658 ER -