TY  - JOUR
A1  - Hartmann, Stefanie
A1  - Preick, Michaela
A1  - Abelt, Silke
A1  - Scheffel, André
A1  - Hofreiter, Michael
T1  - Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea
JF  - BMC Research Notes
N2  - Objective
Plant carnivory is distributed across the tree of life and has evolved at least six times independently, but sequenced and annotated nuclear genomes of carnivorous plants are currently lacking. We have sequenced and structurally annotated the nuclear genome of the carnivorous Roridula gorgonias and that of a non-carnivorous relative, Madeira’s lily-of-the-valley-tree, Clethra arborea, both within the Ericales. This data adds an important resource to study the evolutionary genetics of plant carnivory across angiosperm lineages and also for functional and systematic aspects of plants within the Ericales.

Results
Our assemblies have total lengths of 284 Mbp (R. gorgonias) and 511 Mbp (C. arborea) and show high BUSCO scores of 84.2% and 89.5%, respectively. We used their predicted genes together with publicly available data from other Ericales’ genomes and transcriptomes to assemble a phylogenomic data set for the inference of a species tree. However, groups of orthologs showed a marked absence of species represented by a transcriptome. We discuss possible reasons and caution against combining predicted genes from genome- and transriptome-based assemblies.
KW  - Carnivorous plant
KW  - Roridula gorgonias
KW  - Clethra arborea
KW  - Genome assembly
KW  - Transcriptome assembly
KW  - Phylogenomics
KW  - Orthologous Matrix (OMA) Project
Y1  - 2020
U6  - https://doi.org/10.1186/s13104-020-05254-4
SN  - 1756-0500
VL  - 13
PB  - Biomed Central
CY  - London
ER  - 
TY  - GEN
A1  - Hartmann, Stefanie
A1  - Preick, Michaela
A1  - Abelt, Silke
A1  - Scheffel, André
A1  - Hofreiter, Michael
T1  - Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea
T2  - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Objective
Plant carnivory is distributed across the tree of life and has evolved at least six times independently, but sequenced and annotated nuclear genomes of carnivorous plants are currently lacking. We have sequenced and structurally annotated the nuclear genome of the carnivorous Roridula gorgonias and that of a non-carnivorous relative, Madeira’s lily-of-the-valley-tree, Clethra arborea, both within the Ericales. This data adds an important resource to study the evolutionary genetics of plant carnivory across angiosperm lineages and also for functional and systematic aspects of plants within the Ericales.

Results
Our assemblies have total lengths of 284 Mbp (R. gorgonias) and 511 Mbp (C. arborea) and show high BUSCO scores of 84.2% and 89.5%, respectively. We used their predicted genes together with publicly available data from other Ericales’ genomes and transcriptomes to assemble a phylogenomic data set for the inference of a species tree. However, groups of orthologs showed a marked absence of species represented by a transcriptome. We discuss possible reasons and caution against combining predicted genes from genome- and transriptome-based assemblies.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1141 
KW  - Carnivorous plant
KW  - Roridula gorgonias
KW  - Clethra arborea
KW  - Genome assembly
KW  - Transcriptome assembly
KW  - Phylogenomics
KW  - Orthologous Matrix (OMA) Project
Y1  - 2021
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-503752
SN  - 1866-8372
ER  -