TY  - JOUR
A1  - Li, Chenzhi
A1  - Postl, Alexander K.
A1  - Böhmer, Thomas
A1  - Cao, Xianyong
A1  - Dolman, Andrew M.
A1  - Herzschuh, Ulrike
T1  - Harmonized chronologies of a global late Quaternary pollen dataset (LegacyAge 1.0)
JF  - Earth system science data : ESSD
N2  - We present a chronology framework named LegacyAge 1.0 containing harmonized chronologies for 2831 pollen records (downloaded from the Neotoma Paleoecology Database and the supplementary Asian datasets) together with their age control points and metadata in machine-readable data formats.  
All chronologies use the Bayesian framework implemented in Bacon version 2.5.3. Optimal parameter settings of priors (accumulation.shape, memory.strength, memory.mean, accumulation.rate, and thickness) were identified based on information in the original publication or iteratively after preliminary model inspection. 
The most common control points for the chronologies are radiocarbon dates (86.1 %), calibrated by the latest calibration curves (IntCal20 and SHCal20 for the terrestrial radiocarbon dates in the Northern Hemisphere and Southern Hemisphere and Marine20 for marine materials). 
The original publications were consulted when dealing with outliers and inconsistencies. Several major challenges when setting up the chronologies included the waterline issue (18.8% of records), reservoir effect (4.9 %), and sediment deposition discontinuity (4.4 %). 
Finally, we numerically compare the LegacyAge 1.0 chronologies to those published in the original publications and show that the reliability of the chronologies of 95.4% of records could be improved according to our assessment. 
Our chronology framework and revised chronologies provide the opportunity to make use of the ages and age uncertainties in synthesis studies of, for example, pollen-based vegetation and climate change. 
The LegacyAge 1.0 dataset, including metadata, datings, harmonized chronologies, and R code used, is openaccess and available at PANGAEA (https://doi.org/10.1594/PANGAEA.933132; Li et al., 2021) and Zenodo (https://doi.org/10.5281/zenodo.5815192; Li et al., 2022), respectively.
Y1  - 2022
U6  - https://doi.org/10.5194/essd-14-1331-2022
SN  - 1866-3508
SN  - 1866-3516
VL  - 14
IS  - 3
SP  - 1331
EP  - 1343
PB  - Copernics Publications
CY  - Katlenburg-Lindau
ER  - 
TY  - THES
A1  - Kiss, Andrea
T1  - Moss-associated bacterial and archaeal communities of northern peatlands: key taxa, environmental drivers and potential functions
T1  - Moos-assoziierte bakterielle und archaelle Gemeinschaften nördlicher Moore: Schlüsselspezies, beeinflussende Umweltfaktoren und potentielle Funktionen
N2  - Moss-microbe associations are often characterised by syntrophic interactions between the microorganisms and their hosts, but the structure of the microbial consortia and their role in peatland development remain unknown. 
In order to study microbial communities of dominant peatland mosses, Sphagnum and brown mosses, and the respective environmental drivers, four study sites representing different successional stages of natural northern peatlands were chosen on a large geographical scale: two brown moss-dominated, circumneutral peatlands from the Arctic and two Sphagnum-dominated, acidic peat bogs from subarctic and temperate zones. 
The family Acetobacteraceae represented the dominant bacterial taxon of Sphagnum mosses from various geographical origins and displayed an integral part of the moss core community. This core community was shared among all investigated bryophytes and consisted of few but highly abundant prokaryotes, of which many appear as endophytes of Sphagnum mosses. Moreover, brown mosses and Sphagnum mosses represent habitats for archaea which were not studied in association with peatland mosses so far. Euryarchaeota that are capable of methane production (methanogens) displayed the majority of the moss-associated archaeal communities. Moss-associated methanogenesis was detected for the first time, but it was mostly negligible under laboratory conditions. Contrarily, substantial moss-associated methane oxidation was measured on both, brown mosses and Sphagnum mosses, supporting that methanotrophic bacteria as part of the moss microbiome may contribute to the reduction of methane emissions from pristine and rewetted peatlands of the northern hemisphere.
Among the investigated abiotic and biotic environmental parameters, the peatland type and the host moss taxon were identified to have a major impact on the structure of moss-associated bacterial communities, contrarily to archaeal communities whose structures were similar among the investigated bryophytes. For the first time it was shown that different bog development stages harbour distinct bacterial communities, while at the same time a small core community is shared among all investigated bryophytes independent of geography and peatland type. 
The present thesis displays the first large-scale, systematic assessment of bacterial and archaeal communities associated both with brown mosses and Sphagnum mosses. It suggests that some host-specific moss taxa have the potential to play a key role in host moss establishment and peatland development.
N2  - Während die Beziehungen zwischen Moosen und den mit ihnen assoziierten Mikroorganismen oft durch syntrophische Wechselwirkungen charakterisiert sind, ist die Struktur der Moos-assoziierten mikrobiellen Gemeinschaften sowie deren Rolle bei der Entstehung von Mooren weitgehend unbekannt. 
Die vorliegende Arbeit befasst sich mit mikrobiellen Gemeinschaften, die mit Moosen nördlicher, naturnaher Moore assoziiert sind, sowie mit den Umweltfaktoren, die sie beeinflussen. Entlang eines groß angelegten geographischen Gradienten, der von der Hocharktis bis zur gemäßigten Klimazone reicht, wurden vier naturbelassene Moore als Probenstandorte ausgesucht, die stellvertretend für verschiedene Stadien der Moorentwicklung stehen: zwei Braunmoos-dominierte Niedermoore mit nahezu neutralem pH-Wert sowie zwei Sphagnum-dominierte Torfmoore mit saurem pH-Wert. 
Die Ergebnisse der vorliegenden Arbeit machen deutlich, dass die zu den Bakterien zählenden Acetobacteraceae das vorherrschende mikrobielle Taxon der Sphagnum-Moose gleich welchen geographischen Ursprungs darstellen und insbesondere innerhalb des Wirtsmoosgewebes dominieren. Gleichzeitig gehörten die Acetobacteraceae zum wesentlichen Bestandteil der mikrobiellen Kerngemeinschaft aller untersuchten Moose, die sich aus einigen wenigen Arten, dafür zahlreich vorkommenden Prokaryoten zusammensetzt.
Die vorliegende Arbeit zeigt zudem erstmals, dass sowohl Braunmoose als auch Torfmoose ein Habitat für Archaeen darstellen. Die Mehrheit der Moos-assoziierten Archaeen gehörte dabei zu den methanbildenden Gruppen, wenngleich die metabolischen Aktivitätsraten unter Laborbedingungen meistens kaum messbar waren. Im Gegensatz hierzu konnte die Bakterien-vermittelte Methanoxidation sowohl an Braunmoosen als auch an Sphagnum-Moosen gemessen werden. Dies zeigt eindrucksvoll, dass Moos-assoziierte Bakterien potenziell zur Minderung von Methanemissionen aus nördlichen, aber auch wiedervernässten Mooren beitragen können.
Ein weiteres wichtiges Resultat der vorliegenden Arbeit ist die Bedeutung des Moortyps (Niedermoor oder Torfmoor), aber auch der Wirtsmoosart selbst für die Struktur der Moos-assoziierten Bakteriengemeinschaften, während die archaeellen Gemeinschaftsstrukturen weder vom Moortyp noch von der Wirtsmoosart beeinflusst wurden und sich insgesamt deutlich ähnlicher waren als die der Bakterien. 
Darüber hinaus konnte erstmalig gezeigt werden, dass sich die bakteriellen Gemeinschaften innerhalb der unterschiedlichen Moorsukzessionsstadien zwar ganz erheblich voneinander unterscheiden, ein kleiner Teil der Bakterien dennoch Kerngemeinschaften bilden, die mit allen untersuchten Moosarten assoziiert waren.
Bei der hier präsentierten Arbeit handelt es sich um die erste systematische Studie, die sich auf einer großen geographischen Skala mit den bakteriellen und archaeellen Gemeinschaften von Braunmoosen und Torfmoosen aus naturbelassenen nördlichen Mooren befasst. Die vorliegenden Ergebnisse machen deutlich, dass die untersuchten Moose ein ganz spezifisches mikrobielles Konsortium beherbergen, welches mutmaßlich eine Schlüsselrolle bei der Etablierung der Wirtspflanzen am Anfang der Moorentwicklung spielt und darüber hinaus das Potential hat, die charakteristischen Eigenschaften von Mooren sowie deren weitere Entwicklung zu prägen.
KW  - moss-microbe-interactions
KW  - moss-associated bacteria
KW  - moss-associated archaea
KW  - northern peatlands
KW  - peatland core microbiome
KW  - Acetobacteraceae
KW  - moss-associated methanotrophy
KW  - moss-associated methanogenesis
KW  - Sphagnum
KW  - Amblystegiaceae
KW  - endophytes
KW  - brown mosses
KW  - epiphytes
KW  - peatland development
KW  - bryophytes
KW  - host-specificity
KW  - large-scale study
KW  - methanotrophic bacteria
KW  - methanogenic archaea
KW  - Essigsäurebakterien
KW  - Amblystegiaceae
KW  - Torfmoose
KW  - Braunmoose
KW  - Bryophyten
KW  - Endophyten
KW  - Epiphyten
KW  - Wirtsspezifität
KW  - geographische Großstudie
KW  - methanproduzierende Archaeen
KW  - methanoxidierende Bakterien
KW  - Moos-assoziierte Methanproduktion
KW  - Moos-assoziierte Methanoxidation
KW  - Moos-Mikroben-Interaktion
KW  - nördliche Moore
KW  - mikrobielle Moor-Kerngemeinschaft
KW  - Moorsukzession
Y1  - 2024
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-630641
ER  - 
TY  - THES
A1  - Hammel, Alexander
T1  - Establishing the red microalga Porphyridium purpureum as a novel platform for the production of recombinant proteins
T1  - Die Etablierung der roten Mikroalge Porphyridium purpureum als neue Platform für die Herstellung rekombinanter Proteine
N2  - Microalgae have been recognized as a promising green production platform for recombinant proteins. The majority of studies on recombinant protein expression have been conducted in the green microalga C. reinhardtii. While promising improvement regarding nuclear transgene expression in this alga has been made, it is still inefficient due to epigenetic silencing, often resulting in low yields that are not competitive with other expressor organisms. Other microalgal species might be better suited for high-level protein expression, but are limited in their availability of molecular tools. 
The red microalga Porphyridium purpureum recently emerged as candidate for the production of recombinant proteins. It is promising in that transformation vectors are episomally maintained as autonomously replicating plasmids in the nucleus at a high copy number, thus leading to high expression values in this red alga. 
In this work, we expand the genetic tools for P. purpureum and investigate parameters that govern efficient transgene expression. We provide an improved transformation protocol to streamline the generation of transgenic lines in this organism. After being able to efficiently generate transgenic lines, we showed that codon usage is a main determinant of high-level transgene expression, not only at the protein level but also at the level of mRNA accumulation. The optimized expression constructs resulted in YFP accumulation up to an unprecedented 5% of the total soluble protein. Furthermore, we designed new constructs conferring efficient transgene expression into the culture medium, simplifying purification and harvests of recombinant proteins. To further improve transgene expression, we tested endogenous promoters driving the most highly transcribed genes in P. purpureum and found minor increase of YFP accumulation. 
We employed the previous findings to express complex viral antigens from the hepatitis B virus and the hepatitis C virus in P. purpureum to demonstrate its feasibility as producer of biopharmaceuticals. The viral glycoproteins were successfully produced to high levels and could reach their native confirmation, indicating a functional glycosylation machinery and an appropriate folding environment in this red alga. We could successfully upscale the biomass production of transgenic lines and with that provide enough material for immunization trials in mice that were performed in collaboration. These trials showed no toxicity of neither the biomass nor the purified antigens, and, additionally, the algal-produced antigens were able to elicit a strong and specific immune response. 
The results presented in this work pave the way for P. purpureum as a new promising producer organism for biopharmaceuticals in the microalgal field.
N2  - Biotechnologisch hergestellte Proteine (rekombinante Proteine), wie zum Beispiel monoklonale Antikörper, Insulin oder diverse Impfstoffe, spielen heutzutage eine immer wichtigere Rolle bei der Bekämpfung von Krankheiten. Diese werden hauptsächlich aus genetisch veränderten humanen Zelllinien hergestellt. Die Produktion ist allerdings sehr teuer, anfällig für Kontaminationen und nicht nachhaltig.
Als Alternative dazu können Mikroalgen benutzt werden, die viel günstiger kultiviert werden können und viele Vorteile bezüglich des ökologischen Aspekts bieten. Die bisherige Forschung an Mikroalgen als Plattform für die Herstellung rekombinanter Proteine konzentriert sich vor allem auf die grüne Mikroalge Chlamydomonas reinhardtii. Doch vor allem die geringe Proteinausbeute macht diese Alge nicht zum idealen Expressionsorganismus.
Kürzlich wurde die rote Mikroalge Porphyridium purpureum als vielversprechende Kandidatin für die Produktion rekombinanter Proteine identifiziert. Besonders interessant ist, dass diese Alge rekombinante Proteine in einem hohen Maß exprimiert.
Diese Arbeit beschäftigt sich mit dem Potenzial von Porphyridium purpureum als relativ unerforschte Alge. Es wurden neue genetische Werkzeuge entwickelt und verschiedene Faktoren untersucht, die die Expression von eingebrachten Genen beeinflussen. Durch Optimierung dieser Parameter konnten wir die Proteinausbeute eines gelb fluoreszierenden Proteins auf 5% des löslichen Gesamtproteins steigern.
Wir haben das gewonnene Wissen genutzt, um jeweils ein Oberflächenprotein vom Hepatitis B Virus und vom Hepatitis C Virus in dieser roten Mikroalge herzustellen. Diese können als möglicher zukünftiger Impfstoff benutzt werden. Wir konnten zeigen, dass beide Proteine korrekt und in hoher Menge in Porphyridium purpureum hergestellt werden.
Anschließend wurden die hergestellten Proteine auf ihre Wirksamkeit und Verträglichkeit an Mäusen getestet. Dabei wurde gezeigt, dass (i) Porphyridium purpureum nicht giftig ist und auch keine giftigen Produkte produziert und (ii) die produzierten Proteine eine effektive Immunantwort gegen die Viren induzieren.
Mit dieser Arbeit wurde das Fundament für die biotechnologische Anwendung dieser roten Mikroalge gelegt. Die Ergebnisse dieser Studie zeigen, dass P. purpureum eine vielversprechende Mikroalgenart für die Produktion von biopharmazeutischen Proteinen ist.
KW  - microalgae
KW  - biotechnology
KW  - subunit vaccine
KW  - Biotechnologie
KW  - Mikroalgen
KW  - Untereinheitenimpfstoff
Y1  - 2024
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-632709
ER  - 
TY  - JOUR
A1  - Omranian, Sara
A1  - Angeleska, Angela
A1  - Nikoloski, Zoran
T1  - Efficient and accurate identification of protein complexes from protein-protein interaction networks based on the clustering coefficient
JF  - Computational and structural biotechnology journal
N2  - Identification of protein complexes from protein-protein interaction (PPI) networks is a key problem in PPI mining, solved by parameter-dependent approaches that suffer from small recall rates. Here we introduce GCC-v, a family of efficient, parameter-free algorithms to accurately predict protein complexes using the (weighted) clustering coefficient of proteins in PPI networks. Through comparative analyses with gold standards and PPI networks from Escherichia coli, Saccharomyces cerevisiae, and Homo sapiens, we demonstrate that GCC-v outperforms twelve state-of-the-art approaches for identification of protein complexes with respect to twelve performance measures in at least 85.71% of scenarios. We also show that GCC-v results in the exact recovery of similar to 35% of protein complexes in a pan-plant PPI network and discover 144 new protein complexes in Arabidopsis thaliana, with high support from GO semantic similarity. Our results indicate that findings from GCC-v are robust to network perturbations, which has direct implications to assess the impact of the PPI network quality on the predicted protein complexes. (C) 2021 The Author(s). Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology.
KW  - Protein complexes
KW  - Protein-protein interaction
KW  - Network clustering
KW  - Species comparison
Y1  - 2021
U6  - https://doi.org/10.1016/j.csbj.2021.09.014
SN  - 2001-0370
VL  - 19
SP  - 5255
EP  - 5263
PB  - Elsevier
CY  - Amsterdam
ER  - 
TY  - JOUR
A1  - Hampf, Anna
A1  - Nendel, Claas
A1  - Strey, Simone
A1  - Strey, Robert
T1  - Biotic yield losses in the Southern Amazon, Brazil
BT  - making use of smartphone-assisted plant disease diagnosis data
JF  - Frontiers in plant science : FPLS
N2  - Pathogens and animal pests (P&A) are a major threat to global food security as they directly affect the quantity and quality of food. The Southern Amazon, Brazil's largest domestic region for soybean, maize and cotton production, is particularly vulnerable to the outbreak of P&A due to its (sub)tropical climate and intensive farming systems. However, little is known about the spatial distribution of P&A and the related yield losses. Machine learning approaches for the automated recognition of plant diseases can help to overcome this research gap. The main objectives of this study are to (1) evaluate the performance of Convolutional Neural Networks (ConvNets) in classifying P&A, (2) map the spatial distribution of P&A in the Southern Amazon, and (3) quantify perceived yield and economic losses for the main soybean and maize P&A. The objectives were addressed by making use of data collected with the smartphone application Plantix. The core of the app's functioning is the automated recognition of plant diseases via ConvNets. Data on expected yield losses were gathered through a short survey included in an "expert" version of the application, which was distributed among agronomists. Between 2016 and 2020, Plantix users collected approximately 78,000 georeferenced P&A images in the Southern Amazon. The study results indicate a high performance of the trained ConvNets in classifying 420 different crop-disease combinations. Spatial distribution maps and expert-based yield loss estimates indicate that maize rust, bacterial stalk rot and the fall armyworm are among the most severe maize P&A, whereas soybean is mainly affected by P&A like anthracnose, downy mildew, frogeye leaf spot, stink bugs and brown spot. Perceived soybean and maize yield losses amount to 12 and 16%, respectively, resulting in annual yield losses of approximately 3.75 million tonnes for each crop and economic losses of US$2 billion for both crops together. The high level of accuracy of the trained ConvNets, when paired with widespread use from following a citizen-science approach, results in a data source that will shed new light on yield loss estimates, e.g., for the analysis of yield gaps and the development of measures to minimise them.
KW  - plant pathology
KW  - animal pests
KW  - pathogens
KW  - machine learning
KW  - digital
KW  - image processing
KW  - disease diagnosis
KW  - crowdsourcing
KW  - crop losses
Y1  - 2021
U6  - https://doi.org/10.3389/fpls.2021.621168
SN  - 1664-462X
VL  - 12
PB  - Frontiers Media
CY  - Lausanne
ER  - 
TY  - JOUR
A1  - Irob, Katja
A1  - Blaum, Niels
A1  - Baldauf, Selina
A1  - Kerger, Leon
A1  - Strohbach, Ben
A1  - Kanduvarisa, Angelina
A1  - Lohmann, Dirk
A1  - Tietjen, Britta
T1  - Browsing herbivores improve the state and functioning of savannas
BT  - A model assessment of alternative land-use strategies
JF  - Ecology and evolution
N2  - Changing climatic conditions and unsustainable land use are major threats to savannas worldwide. Historically, many African savannas were used intensively for livestock grazing, which contributed to widespread patterns of bush encroachment across savanna systems. To reverse bush encroachment, it has been proposed to change the cattle-dominated land use to one dominated by comparatively specialized browsers and usually native herbivores. However, the consequences for ecosystem properties and processes remain largely unclear. We used the ecohydrological, spatially explicit model EcoHyD to assess the impacts of two contrasting, herbivore land-use strategies on a Namibian savanna: grazer- versus browser-dominated herbivore communities. We varied the densities of grazers and browsers and determined the resulting composition and diversity of the plant community, total vegetation cover, soil moisture, and water use by plants. Our results showed that plant types that are less palatable to herbivores were best adapted to grazing or browsing animals in all simulated densities. Also, plant types that had a competitive advantage under limited water availability were among the dominant ones irrespective of land-use scenario. Overall, the results were in line with our expectations: under high grazer densities, we found heavy bush encroachment and the loss of the perennial grass matrix. Importantly, regardless of the density of browsers, grass cover and plant functional diversity were significantly higher in browsing scenarios. Browsing herbivores increased grass cover, and the higher total cover in turn improved water uptake by plants overall. We concluded that, in contrast to grazing-dominated land-use strategies, land-use strategies dominated by browsing herbivores, even at high herbivore densities, sustain diverse vegetation communities with high cover of perennial grasses, resulting in lower erosion risk and bolstering ecosystem services.
KW  - browsing
KW  - ecohydrology
KW  - land use
KW  - plant community
KW  - savanna
KW  - wildlife
KW  - management
Y1  - 2022
U6  - https://doi.org/10.1002/ece3.8715
SN  - 2045-7758
VL  - 12
IS  - 3
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - JOUR
A1  - Ghafarian, Fatemeh
A1  - Wieland, Ralf
A1  - Lüttschwager, Dietmar
A1  - Nendel, Claas
T1  - Application of extreme gradient boosting and Shapley Additive explanations to predict temperature regimes inside forests from standard open-field meteorological data
JF  - Environmental modelling & software with environment data news
N2  - Forest microclimate can buffer biotic responses to summer heat waves, which are expected to become more extreme under climate warming. Prediction of forest microclimate is limited because meteorological observation standards seldom include situations inside forests. 
We use eXtreme Gradient Boosting - a Machine Learning technique - to predict the microclimate of forest sites in Brandenburg, Germany, using seasonal data comprising weather features. 
The analysis was amended by applying a SHapley Additive explanation to show the interaction effect of variables and individualised feature attributions. 
We evaluate model performance in comparison to artificial neural networks, random forest, support vector machine, and multi-linear regression. 
After implementing a feature selection, an ensemble approach was applied to combine individual models for each forest and improve robustness over a given single prediction model. 
The resulting model can be applied to translate climate change scenarios into temperatures inside forests to assess temperature-related ecosystem services provided by forests.
KW  - cooling effect
KW  - machine learning
KW  - ensemble method
KW  - ecosystem services
Y1  - 2022
U6  - https://doi.org/10.1016/j.envsoft.2022.105466
SN  - 1364-8152
SN  - 1873-6726
VL  - 156
PB  - Elsevier
CY  - Oxford
ER  - 
TY  - JOUR
A1  - Caserta, Giorgio
A1  - Zhang, Xiaorong
A1  - Yarman, Aysu
A1  - Supala, Eszter
A1  - Wollenberger, Ulla
A1  - Gyurcsányi, Róbert  E.
A1  - Zebger, Ingo
A1  - Scheller, Frieder W.
T1  - Insights in electrosynthesis, target binding, and stability of peptide-imprinted polymer nanofilms
JF  - Electrochimica acta : the journal of the International Society of Electrochemistry (ISE)
N2  - Molecularly imprinted polymer (MIP) nanofilms have been successfully implemented for the recognition of different target molecules: however, the underlying mechanistic details remained vague. 
This paper provides new insights in the preparation and binding mechanism of electrosynthesized peptide-imprinted polymer nanofilms for selective recognition of the terminal pentapeptides of the beta-chains of human adult hemoglobin, HbA, and its glycated form HbA1c. 
To differentiate between peptides differing solely in a glucose adduct MIP nanofilms were prepared by a two-step hierarchical electrosynthesis that involves first the chemisorption of a cysteinyl derivative of the pentapeptide followed by electropolymerization of scopoletin. 
This approach was compared with a random single-step electrosynthesis using scopo-letin/pentapeptide mixtures. Electrochemical monitoring of the peptide binding to the MIP nanofilms by means of redox probe gating revealed a superior affinity of the hierarchical approach with a Kd value of 64.6 nM towards the related target. 
Changes in the electrosynthesized non-imprinted polymer and MIP nanofilms during chemical, electrochemical template removal and rebinding were substantiated in situ by monitoring the characteristic bands of both target peptides and polymer with surface enhanced infrared absorption spectroscopy. 
This rational approach led to MIPs with excellent selectivity and provided key mechanistic insights with respect to electrosynthesis, rebinding and stability of the formed MIPs.
KW  - SEIRA spectroelectrochemistry
KW  - peptide imprinting
KW  - electrosynthesis
KW  - MIP
KW  - glycated peptide
Y1  - 2021
U6  - https://doi.org/10.1016/j.electacta.2021.138236
SN  - 0013-4686
SN  - 1873-3859
VL  - 381
PB  - Elsevier
CY  - New York, NY [u.a.]
ER  - 
TY  - JOUR
A1  - Mitzscherling, Julia
A1  - MacLean, Joana
A1  - Lipus, Daniel
A1  - Bartholomäus, Alexander
A1  - Mangelsdorf, Kai
A1  - Lipski, André
A1  - Roddatis, Vladimir
A1  - Liebner, Susanne
A1  - Wagner, Dirk
T1  - Nocardioides alcanivorans sp. nov., a novel hexadecane-degrading species isolated from plastic waste
JF  - International journal of systematic and evolutionary microbiology
N2  - Strain NGK65(T), a novel hexadecane degrading, non-motile, Gram-positive, rod-to-coccus shaped, aerobic bacterium, was isolated from plastic polluted soil sampled at a landfill. 
Strain NGK65(T) hydrolysed casein, gelatin, urea and was catalase-positive. It optimally grew at 28 degrees C. in 0-1% NaCl and at pH 7.5-8.0. Glycerol, D-glucose, arbutin, aesculin, salicin, potassium 5-ketogluconate. sucrose, acetate, pyruvate and hexadecane were used as sole carbon sources. 
The predominant membrane fatty acids were iso-C-16:0 followed by iso-C(17:)0 and C-18:1 omega 9c. The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and hydroxyphosphatidylinositol. 
The cell-wall peptidoglycan type was A3 gamma, with LL-diaminopimelic acid and glycine as the diagnostic amino acids. MK 8 (H-4) was the predominant menaquinone. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain NGK65(T) belongs to the genus Nocardioides (phylum Actinobacteria). appearing most closely related to Nocardioides daejeonensis MJ31(T) (98.6%) and Nocardioides dubius KSL-104(T) (98.3%). 
The genomic DNA G+C content of strain NGK65(T) was 68.2%. 
Strain NGK65(T) and the type strains of species involved in the analysis had average nucleotide identity values of 78.3-71.9% as well as digital DNA-DNA hybridization values between 22.5 and 19.7%, which clearly indicated that the isolate represents a novel species within the genus Nocardioides. 
Based on phenotypic and molecular characterization, strain NGK65(T) can clearly be differentiated from its phylogenetic neighbours to establish a novel species, for which the name Nocardioides alcanivorans sp. nov. is proposed. 
The type strain is NGK65(T) (=DSM 113112(T)=NCCB 100846(T)).
KW  - Nocardioides alcanivorans
KW  - hexadecane
KW  - plastic degradation
KW  - terrestrial
KW  - plastisphere
KW  - bacteria
Y1  - 2022
U6  - https://doi.org/10.1099/ijsem.0.005319
SN  - 1466-5026
SN  - 1466-5034
VL  - 72
IS  - 4
PB  - Microbiology Society
CY  - London
ER  - 
TY  - JOUR
A1  - Hilt, Sabine
A1  - Grossart, Hans-Peter
A1  - McGinnis, Daniel F.
A1  - Keppler, Frank
T1  - Potential role of submerged macrophytes for oxic methane production in aquatic ecosystems
JF  - Limnology and oceanography
N2  - Methane (CH4) from aquatic ecosystems contributes to about half of total global CH4 emissions to the atmosphere. Until recently, aquatic biogenic CH4 production was exclusively attributed to methanogenic archaea living under anoxic or suboxic conditions in sediments, bottom waters, and wetlands. However, evidence for oxic CH4 production (OMP) in freshwater, brackish, and marine habitats is increasing. Possible sources were found to be driven by various planktonic organisms supporting different OMP mechanisms. Surprisingly, submerged macrophytes have been fully ignored in studies on OMP, yet they are key components of littoral zones of ponds, lakes, and coastal systems. High CH4 concentrations in these zones have been attributed to organic substrate production promoting classic methanogenesis in the absence of oxygen. Here, we review existing studies and argue that, similar to terrestrial plants and phytoplankton, macroalgae and submerged macrophytes may directly or indirectly contribute to CH4 formation in oxic waters. We propose several potential direct and indirect mechanisms: (1) direct production of CH4; (2) production of CH4 precursors and facilitation of their bacterial breakdown or chemical conversion; (3) facilitation of classic methanogenesis; and (4) facilitation of CH4 ebullition. As submerged macrophytes occur in many freshwater and marine habitats, they are important in global carbon budgets and can strongly vary in their abundance due to seasonal and boom-bust dynamics. Knowledge on their contribution to OMP is therefore essential to gain a better understanding of spatial and temporal dynamics of CH4 emissions and thus to substantially reduce current uncertainties when estimating global CH4 emissions from aquatic ecosystems.
Y1  - 2022
U6  - https://doi.org/10.1002/lno.12095
SN  - 0024-3590
SN  - 1939-5590
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - JOUR
A1  - Yarman, Aysu
A1  - Kurbanoğlu, Sevinç
A1  - Zebger, Ingo
A1  - Scheller, Frieder W.
T1  - Simple and robust
BT  - the claims of protein sensing by molecularly imprinted polymers
JF  - Sensors and actuators : B, Chemical : an international journal devoted to research and development of chemical transducers
N2  - A spectrum of 7562 publications on Molecularly Imprinted Polymers (MIPs) has been presented in literature within the last ten years (Scopus, September 7, 2020). Around 10 % of the papers published on MIPs describe the recognition of proteins. The straightforward synthesis of MIPs is a significant advantage as compared with the preparation of enzymes or antibodies. MIPs have been synthesized from only one up to six functional monomers while proteins are made up of 20 natural amino acids. Furthermore, they can be synthesized against structures of low immunogenicity and allow multi-analyte measurements via multi-target synthesis. Electrochemical methods allow simple polymer synthesis, removal of the template and readout. Among the different sensor configurations electrochemical MIP-sensors provide the broadest spectrum of protein analytes. The sensitivity of MIP-sensors is sufficiently high for biomarkers in the sub-nanomolar region, nevertheless the cross-reactivity of highly abundant proteins in human serum is still a challenge. MIPs for proteins offer innovative tools not only for clinical and environmental analysis, but also for bioimaging, therapy and protein engineering.
KW  - Molecularly imprinted polymer
KW  - Plastibodies
KW  - Functional scaffolds
KW  - Biomimetic sensors
KW  - Proteins
Y1  - 2021
U6  - https://doi.org/10.1016/j.snb.2020.129369
SN  - 0925-4005
SN  - 1873-3077
VL  - 330
PB  - Elsevier Science
CY  - Amsterdam [u.a.]
ER  - 
TY  - JOUR
A1  - Tran, V. Phuong
A1  - Tamura, Yui
A1  - Pham, Van-Cuong
A1  - Elhussiny, Mohamed Z.
A1  - Han, Guofeng
A1  - Sur Chowdhury, Vishwajit
A1  - Furuse, Mitsuhiro
T1  - Neuropeptide Y modifies a part of diencephalic catecholamine but not indolamine metabolism in chicks depending on feeding status
JF  - Neuropeptides
N2  - The role of the monoaminergic system in the feeding behavior of neonatal chicks has been reported, but the functional relationship between the metabolism of monoamines and appetite-related neuropeptides is still unclear. This study aimed to investigate the changes in catecholamine and indolamine metabolism in response to the central action of neuropeptide Y (NPY) in different feeding statuses and the underlying mechanisms. In Experiment 1, the diencephalic concentrations of amino acids and monoamines following the intracerebroventricular (ICV) injection of NPY (375 pmol/10 mu l/chick), saline solution under ad libitum, and fasting conditions for 30 min were determined. Central NPY significantly decreased L-tyrosine concentration, the precursor of catecholamines under feeding condition, but not under fasting condition. Central NPY significantly increased dopamine metabolites, including 3,4-dihydroxyphenylacetic acid and homovanillic acid (HVA). The concentration of 3-methoxy-4-hydroxyphenylglycol was significantly reduced under feeding condition, but did not change under fasting condition by NPY. However, no effects of NPY on indolamine metabolism were found in either feeding status. Therefore, the mechanism of action of catecholamines with central NPY under feeding condition was elucidated in Experiment 2. Central NPY significantly attenuated diencephalic gene expression of catecholaminergic synthetic enzymes, such as tyrosine hydroxylase, L-aromatic amino acid decarboxylase, and GTP cyclohydrolase I after 30 min of feeding. In Experiment 3, co-injection of alpha-methyl-L-tyrosine, an inhibitor of tyrosine hydroxylase with NPY, moderately attenuated the orexigenic effect of NPY, accompanied by a significant positive correlation between food intake and HVA levels. In Experiment 4, there was a significant interaction between NPY and clorgyline, an inhibitor of monoamine oxidase A with ICV co-injection which implies that co-existence of NPY and clorgyline enhances the orexigenic effect of NPY. In conclusion, central NPY modifies a part of catecholamine metabolism, which is illustrated by the involvement of dopamine transmission and metabolism under feeding but not fasting conditions.
KW  - Neuropeptide Y
KW  - Feeding behavior
KW  - Neonatal chick
KW  - CNS
KW  - Catecholamines
Y1  - 2021
U6  - https://doi.org/10.1016/j.npep.2021.102169
SN  - 0143-4179
SN  - 1532-2785
VL  - 89
PB  - Elsevier
CY  - New York, NY
ER  - 
TY  - JOUR
A1  - Pan, Xuefeng
A1  - Sarhan, Radwan Mohamed
A1  - Kochovski, Zdravko
A1  - Chen, Guosong
A1  - Taubert, Andreas
A1  - Mei, Shilin
A1  - Lu, Yan
T1  - Template synthesis of dual-functional porous MoS2 nanoparticles with photothermal conversion and catalytic properties
JF  - Nanoscale
N2  - Advanced catalysis triggered by photothermal conversion effects has aroused increasing interest due to its huge potential in environmental purification. 
In this work, we developed a novel approach to the fast degradation of 4-nitrophenol (4-Nip) using porous MoS2 nanoparticles as catalysts, which integrate the intrinsic catalytic property of MoS2 with its photothermal conversion capability. 
Using assembled polystyrene-b-poly(2-vinylpyridine) block copolymers as soft templates, various MoS 2 particles were prepared, which exhibited tailored morphologies (e.g., pomegranate-like, hollow, and open porous structures). 
The photothermal conversion performance of these featured particles was compared under near-infrared (NIR) light irradiation. 
Intriguingly, when these porous MoS2 particles were further employed as catalysts for the reduction of 4-Nip, the reaction rate constant was increased by a factor of 1.5 under NIR illumination. 
We attribute this catalytic enhancement to the open porous architecture and light-to-heat conversion performance of the MoS2 particles. This contribution offers new opportunities for efficient photothermal-assisted catalysis.
Y1  - 2022
U6  - https://doi.org/10.1039/d2nr01040b
SN  - 2040-3372
VL  - 14
IS  - 18
SP  - 6888
EP  - 6901
PB  - RSC Publ. (Royal Society of Chemistry)
CY  - Cambridge
ER  - 
TY  - JOUR
A1  - Hagemann, Justus
A1  - Conejero, Carles
A1  - Stillfried, Milena
A1  - Mentaberre, Gregorio
A1  - Castillo-Contreras, Raquel
A1  - Fickel, Jörns
A1  - Lopez-Olvera, Jorge Ramón
T1  - Genetic population structure defines wild boar as an urban exploiter species in Barcelona, Spain
JF  - The science of the total environment : an international journal for scientific research into the environment and its relationship with man
N2  - Urban wildlife ecology is gaining relevance as metropolitan areas grow throughout the world, reducing natural habitats and creating new ecological niches. 
However, knowledge is still scarce about the colonisation processes of such urban niches, the establishment of new communities, populations and/or species, and the related changes in behaviour and life histories of urban wildlife. 
Wild boar (Sus scrofa) has successfully colonised urban niches throughout Europe. 
The aim of this study is to unveil the processes driving the establishment and maintenance of an urban wild boar population by analysing its genetic structure. 
A set of 19 microsatellite loci was used to test whether urban wild boars in Barcelona, Spain, are an isolated population or if gene flow prevents genetic differentiation between rural and urban wild boars. 
This knowledge will contribute to the understanding of the effects of synurbisation and the associated management measures on the genetic change of large mammals in urban ecosystems. Despite the unidirectional gene flow from rural to urban areas, the urban wild boars in Barcelona form an island population genotypically differentiated from the surrounding rural ones. 
The comparison with previous genetic studies of urban wild boar populations suggests that forest patches act as suitable islands for wild boar genetic differentiation. 
Previous results and the genetic structure of the urban wild boar population in Barcelona classify wild boar as an urban exploiter species. 
These wild boar peri-urban island populations are responsible for conflict with humans and thus should be managed by reducing the attractiveness of urban areas. 
The management of peri-urban wild boar populations should aim at reducing migration into urban areas and preventing phenotypic changes (either genetic or plastic) causing habituation of wild boars to humans and urban environments.
KW  - gene flow
KW  - island population
KW  - population genetics
KW  - sus scrofa
KW  - synurbisation
KW  - urban ecology
Y1  - 2022
U6  - https://doi.org/10.1016/j.scitotenv.2022.155126
SN  - 0048-9697
SN  - 1879-1026
VL  - 833
PB  - Elsevier Science
CY  - Amsterdam [u.a.]
ER  - 
TY  - JOUR
A1  - Ralevski, Alexandra
A1  - Apelt, Federico
A1  - Olas, Justyna Jadwiga
A1  - Müller-Röber, Bernd
A1  - Rugarli, Elena I.
A1  - Kragler, Friedrich
A1  - Horvath, Tamas L.
T1  - Plant mitochondrial FMT and its mammalian homolog CLUH controls development and behavior in Arabidopsis and locomotion in mice
JF  - Cellular and molecular life sciences
N2  - Mitochondria in animals are associated with development, as well as physiological and pathological behaviors. Several conserved mitochondrial genes exist between plants and higher eukaryotes. Yet, the similarities in mitochondrial function between plant and animal species is poorly understood. Here, we show that FMT (FRIENDLY MITOCHONDRIA) from Arabidopsis thaliana, a highly conserved homolog of the mammalian CLUH (CLUSTERED MITOCHONDRIA) gene family encoding mitochondrial proteins associated with developmental alterations and adult physiological and pathological behaviors, affects whole plant morphology and development under both stressed and normal growth conditions. FMT was found to regulate mitochondrial morphology and dynamics, germination, and flowering time. It also affects leaf expansion growth, salt stress responses and hyponastic behavior, including changes in speed of hyponastic movements. Strikingly, Cluh(+/-) heterozygous knockout mice also displayed altered locomotive movements, traveling for shorter distances and had slower average and maximum speeds in the open field test. These observations indicate that homologous mitochondrial genes may play similar roles and affect homologous functions in both plants and animals.
KW  - Arabidopsis thaliana
KW  - Mitochondria
KW  - FMT
KW  - Hyponasty
KW  - Mice
KW  - CLUH;
KW  - Locomotion
Y1  - 2022
U6  - https://doi.org/10.1007/s00018-022-04382-3
SN  - 1420-682X
SN  - 1420-9071
VL  - 79
IS  - 6
PB  - Springer International Publishing AG
CY  - Cham (ZG)
ER  - 
TY  - JOUR
A1  - Witzel, Katja
A1  - Abu Risha, Marua
A1  - Albers, Philip
A1  - Börnke, Frederik
A1  - Hanschen, Franziska S.
T1  - Corrigendum : Identification and characterization of three epithiospecifier protein isoforms in Brassica oleracea / Witzel, Katja; Abu Risha, Marua; Albers, Philip; Börnke, Frederike; Hanschen, Franziska S. - Lausanne:  Frontiers Media, 2019. -  Frontiers in plant science : FPLS.  - 10 (2019) art. 1552. - doi: 10.3389/fpls.2019.01552
JF  - Frontiers in plant science : FPLS
KW  - epithionitrile
KW  - expression profile
KW  - functional complementation
KW  - glucosinolate hydrolysis
KW  - nitrile
KW  - specifier proteins
KW  - tissue
KW  - specificity
Y1  - 2020
U6  - https://doi.org/10.3389/fpls.2020.00523
SN  - 1664-462X
VL  - 11
PB  - Frontiers Media
CY  - Lausanne
ER  - 
TY  - GEN
A1  - Schorn, Sina
A1  - Salman-Carvalho, Verena
A1  - Littmann, Sten
A1  - Ionescu, Danny
A1  - Grossart, Hans-Peter
A1  - Cypionka, Heribert
T1  - Cell architecture of the giant sulfur bacterium achromatium oxaliferum
BT  - Extra-cytoplasmic localization of calcium carbonate bodies
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Achromatium oxaliferum is a large sulfur bacterium easily recognized by large intracellular calcium carbonate bodies. Although these bodies often fill major parts of the cells' volume, their role and specific intracellular location are unclear. In this study, we used various microscopy and staining techniques to identify the cell compartment harboring the calcium carbonate bodies. We observed that Achromatium cells often lost their calcium carbonate bodies, either naturally or induced by treatments with diluted acids, ethanol, sodium bicarbonate and UV radiation which did not visibly affect the overall shape and motility of the cells (except for UV radiation). The water-soluble fluorescent dye fluorescein easily diffused into empty cavities remaining after calcium carbonate loss. Membranes (stained with Nile Red) formed a network stretching throughout the cell and surrounding empty or filled calcium carbonate cavities. The cytoplasm (stained with FITC and SYBR Green for nucleic acids) appeared highly condensed and showed spots of dissolved Ca2+ (stained with Fura-2). From our observations, we conclude that the calcium carbonate bodies are located in the periplasm, in extra-cytoplasmic pockets of the cytoplasmic membrane and are thus kept separate from the cell's cytoplasm. This periplasmic localization of the carbonate bodies might explain their dynamic formation and release upon environmental changes.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1356 
KW  - sulfur-bacteria
KW  - calcium carbonate inclusions
KW  - extra-cytoplasmic pockets
KW  - calcite
Y1  - 2019
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-549935
SN  - 1866-8372
IS  - 2
ER  - 
TY  - JOUR
A1  - Schorn, Sina
A1  - Salman-Carvalho, Verena
A1  - Littmann, Sten
A1  - Ionescu, Danny
A1  - Grossart, Hans-Peter
A1  - Cypionka, Heribert
T1  - Cell architecture of the giant sulfur bacterium achromatium oxaliferum
BT  - Extra-cytoplasmic localization of calcium carbonate bodies
JF  - FEMS Microbiology Ecology
N2  - Achromatium oxaliferum is a large sulfur bacterium easily recognized by large intracellular calcium carbonate bodies. Although these bodies often fill major parts of the cells' volume, their role and specific intracellular location are unclear. In this study, we used various microscopy and staining techniques to identify the cell compartment harboring the calcium carbonate bodies. We observed that Achromatium cells often lost their calcium carbonate bodies, either naturally or induced by treatments with diluted acids, ethanol, sodium bicarbonate and UV radiation which did not visibly affect the overall shape and motility of the cells (except for UV radiation). The water-soluble fluorescent dye fluorescein easily diffused into empty cavities remaining after calcium carbonate loss. Membranes (stained with Nile Red) formed a network stretching throughout the cell and surrounding empty or filled calcium carbonate cavities. The cytoplasm (stained with FITC and SYBR Green for nucleic acids) appeared highly condensed and showed spots of dissolved Ca2+ (stained with Fura-2). From our observations, we conclude that the calcium carbonate bodies are located in the periplasm, in extra-cytoplasmic pockets of the cytoplasmic membrane and are thus kept separate from the cell's cytoplasm. This periplasmic localization of the carbonate bodies might explain their dynamic formation and release upon environmental changes.
KW  - sulfur-bacteria
KW  - calcium carbonate inclusions
KW  - extra-cytoplasmic pockets
KW  - calcite
Y1  - 2019
U6  - https://doi.org/10.1093/femsec/fiz200
SN  - 1574-6941
VL  - 96
IS  - 2
SP  - 1
EP  - 8
PB  - Oxford University Press
CY  - Oxford
ER  - 
TY  - JOUR
A1  - Kürschner, Tobias
A1  - Scherer, Cédric
A1  - Radchuk, Viktoriia
A1  - Blaum, Niels
A1  - Kramer-Schadt, Stephanie
T1  - Movement can mediate temporal mismatches between resource availability and biological events in host-pathogen interactions
JF  - Ecology and evolution
N2  - Global change is shifting the timing of biological events, leading to temporal mismatches between biological events and resource availability. These temporal mismatches can threaten species' populations. Importantly, temporal mismatches not only exert strong pressures on the population dynamics of the focal species, but can also lead to substantial changes in pairwise species interactions such as host-pathogen systems. We adapted an established individual-based model of host-pathogen dynamics. The model describes a viral agent in a social host, while accounting for the host's explicit movement decisions. We aimed to investigate how temporal mismatches between seasonal resource availability and host life-history events affect host-pathogen coexistence, that is, disease persistence. Seasonal resource fluctuations only increased coexistence probability when in synchrony with the hosts' biological events. However, a temporal mismatch reduced host-pathogen coexistence, but only marginally. In tandem with an increasing temporal mismatch, our model showed a shift in the spatial distribution of infected hosts. It shifted from an even distribution under synchronous conditions toward the formation of disease hotspots, when host life history and resource availability mismatched completely. The spatial restriction of infected hosts to small hotspots in the landscape initially suggested a lower coexistence probability due to the critical loss of susceptible host individuals within those hotspots. However, the surrounding landscape facilitated demographic rescue through habitat-dependent movement. Our work demonstrates that the negative effects of temporal mismatches between host resource availability and host life history on host-pathogen coexistence can be reduced through the formation of temporary disease hotspots and host movement decisions, with implications for disease management under disturbances and global change.
KW  - classical swine fever
KW  - dynamic landscapes
KW  - global change
KW  - host– pathogen dynamics
KW  - individual‐ based model
KW  - movement ecology
Y1  - 2021
U6  - https://doi.org/10.1002/ece3.7478
SN  - 2045-7758
VL  - 11
IS  - 10
SP  - 5728
EP  - 5741
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - JOUR
A1  - Leins, Johannes A.
A1  - Grimm, Volker
A1  - Drechsler, Martin
T1  - Large-scale PVA modeling of insects in cultivated grasslands
BT  - the role of dispersal in mitigating the effects of management schedules under climate change
JF  - Ecology and evolution
N2  - In many species, dispersal is decisive for survival in a changing climate. Simulation models for population dynamics under climate change thus need to account for this factor. Moreover, large numbers of species inhabiting agricultural landscapes are subject to disturbances induced by human land use. We included dispersal in the HiLEG model that we previously developed to study the interaction between climate change and agricultural land use in single populations. Here, the model was parameterized for the large marsh grasshopper (LMG) in cultivated grasslands of North Germany to analyze (1) the species development and dispersal success depending on the severity of climate change in subregions, (2) the additional effect of grassland cover on dispersal success, and (3) the role of dispersal in compensating for detrimental grassland mowing. Our model simulated population dynamics in 60-year periods (2020-2079) on a fine temporal (daily) and high spatial (250 x 250 m(2)) scale in 107 subregions, altogether encompassing a range of different grassland cover, climate change projections, and mowing schedules. We show that climate change alone would allow the LMG to thrive and expand, while grassland cover played a minor role. Some mowing schedules that were harmful to the LMG nevertheless allowed the species to moderately expand its range. Especially under minor climate change, in many subregions dispersal allowed for mowing early in the year, which is economically beneficial for farmers. More severe climate change could facilitate LMG expansion to uninhabited regions but would require suitable mowing schedules along the path. These insights can be transferred to other species, given that the LMG is considered a representative of grassland communities. For more specific predictions on the dynamics of other species affected by climate change and land use, the publicly available HiLEG model can be easily adapted to the characteristics of their life cycle.
KW  - bilinear interpolation
KW  - climate change
KW  - dispersal success
KW  - land use
KW  - large marsh grasshopper
KW  - spatially explicit model
Y1  - 2022
U6  - https://doi.org/10.1002/ece3.9063
SN  - 2045-7758
VL  - 12
IS  - 7
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - JOUR
A1  - Ghafarian, Fatemeh
A1  - Wieland, Ralf
A1  - Nendel, Claas
T1  - Estimating the Evaporative Cooling Effect of Irrigation within and above Soybean Canopy
JF  - Water
N2  - Vegetation with an adequate supply of water might contribute to cooling the land surface around it through the latent heat flux of transpiration. This study investigates the potential estimation of evaporative cooling at plot scale, using soybean as example. Some of the plants' physiological parameters were monitored and sampled at weekly intervals. A physics-based model was then applied to estimate the irrigation-induced cooling effect within and above the canopy during the middle and late season of the soybean growth period. We then examined the results of the temperature changes at a temporal resolution of ten minutes between every two irrigation rounds. During the middle and late season of growth, the cooling effects caused by evapotranspiration within and above the canopy were, on average, 4.4 K and 2.9 K, respectively. We used quality indicators such as R-squared (R-2) and mean absolute error (MAE) to evaluate the performance of the model simulation. The performance of the model in this study was better above the canopy (R-2 = 0.98, MAE = 0.3 K) than below (R-2 = 0.87, MAE = 0.9 K) due to the predefined thermodynamic condition used to estimate evaporative cooling. Moreover, the study revealed that canopy cooling contributes to mitigating heat stress conditions during the middle and late seasons of crop growth.
KW  - canopy cooling effects
KW  - shading cooling
KW  - canopy-air temperature
KW  - energy
KW  - balance
KW  - the Penman-Monteith equation
Y1  - 2022
U6  - https://doi.org/10.3390/w14030319
SN  - 2073-4441
VL  - 14
IS  - 3
PB  - MDPI
CY  - Basel
ER  - 
TY  - THES
A1  - Cheng, Feng
T1  - Evolution and ontogeny of electric organ discharge in African weakly electric fish genus Campylomormyrus: a genomic and transcriptomic perspective
N2  - The African weakly electric fishes (Mormyridae) exhibit a remarkable adaptive radiation possibly due to their species-specific electric organ discharges (EODs). It is produced by a muscle-derived electric organ that is located in the caudal peduncle. Divergence in EODs acts as a pre-zygotic isolation mechanism to drive species radiations. However, the mechanism behind the EOD diversification are only partially understood. 
The aim of this study is to explore the genetic basis of EOD diversification from the gene expression level across Campylomormyrus species/hybrids and ontogeny. I firstly produced a high quality genome of the species C. compressirostris as a valuable resource to understand the electric fish evolution. 
The next study compared the gene expression pattern between electric organs and skeletal muscles in Campylomormyrus species/hybrids with different types of EOD duration. I identified several candidate genes with an electric organ-specific expression, e.g. KCNA7a, KLF5, KCNJ2, SCN4aa, NDRG3, MEF2. The overall genes expression pattern exhibited a significant association with EOD duration in all analyzed species/hybrids. The expression of several candidate genes, e.g. KCNJ2, KLF5, KCNK6 and KCNQ5, possibly contribute to the regulation of EOD duration in Campylomormyrus due to their increasing or decreasing expression. Several potassium channel genes showed differential expression during ontogeny in species and hybrid with EOD alteration, e.g. KCNJ2. 
I next explored allele specific expression of intragenus hybrids by crossing the duration EOD species C. compressirostris with the medium duration EOD species C. tshokwe and the elongated duration EOD species C. rhynchophorus. The hybrids exhibited global expression dominance of the C. compressirostris allele in the adult skeletal muscle and electric organ, as well as in the juvenile electric organ. Only the gene KCNJ2 showed dominant expression of the allele from C. rhynchophorus, and this was increasingly dominant during ontogeny. It hence supported our hypothesis that KCNJ2 is a key gene of regulating EOD duration. Our results help us to understand, from a genetic perspective, how gene expression effect the EOD diversification in the African weakly electric fish.
N2  - Die Mormyridae, eine Familie afrikanischer schwach elektrischer Süßwasserfische, zeigen eine außergewöhnliche adaptive Radiation. Eine Erklärung für die Diversifizierung dieser Gruppe stellen die artspezifischen elektrischen Organentladungen (EODs) dar. Diese werden von einem elektrischen Organ muskulären Ursprungs im Ansatz der Schwanzflosse erzeugt. Die verschiedenen EODs könnten als präzygotischer Isolationsmechanismus für die Radiation verantwortlich sein. Dennoch ist der Mechanismus hinter der EOD-Diversifizierung bisher nicht vollständig geklärt. 
Ziel dieser Studie ist es, die genetische Grundlage der EOD-Diversifizierung auf der Ebene der Genexpression bei verschiedenen Campylomormyrus-Arten bzw. -Hybriden und während der Ontogenese zu ermitteln. Zunächst wurde erstmals das Genom der Art C. compressirostris in hoher Qualität sequenziert. Dies bildet eine bedeutende Grundlage für das Verständnis der Evolution der elektrischen Fische.
In der zweiten Studie wurden Genexpressionsmuster von elektrischen Organen und Skelettmuskeln bei Campylomormyrus-Arten bzw. -Hybriden mit unterschiedlicher EOD-Dauer verglichen. Dabei konnten mehrere Kandidatengene identifiziert werden, die potentiell Elektroorgan-spezifisch exprimiert sind, i.a. KCNA7a, KLF5, KCNJ2, SCN4aa, NDRG3, MEF2. Bei allen untersuchten Arten/Hybriden wies das Genexpressionsmuster einen signifikanten Zusammenhang mit der EOD-Dauer auf. Die Expression mehrerer Kandidatengene, wie beispielsweise KCNJ2, KLF5, KCNK6 und KCNQ5, trägt möglicherweise zur Regulierung der EOD-Dauer bei Campylomormyrus bei. Bei Arten und Hybriden mit EOD-Unterschieden zeigten Kaliumkanal-Gene wie KCNJ2 eine unterschiedliche Expression während der Ontogenese.
Zudem wurde die Allel-spezifische Expression bei Intragenus-Hybriden unter Verwendung der Arten C. compressirostris, C. tshokwe und C. rhynchophorus, die jeweils eine kurze, intermediäre bzw. lange EOD-Dauer aufweisen, untersucht. Die Hybriden wiesen eine generell dominante Expression der Allele von C. compressirostris in der adulten Skelettmuskulatur und im elektrischen Organ sowie im juvenilen elektrischen Organ auf. Einzig im Gen KCNJ2 dominierte das Allel von C. rhynchophorus, mit zunehmender Dominanz mit fortschreitender Ontogenese. Dies stützt unsere Hypothese einer Beteiligung des KCNJ2-Gens an der Regulation der EOD-Dauer. Unsere Ergebnisse stellen einen wesentlichen Beitrag zum Verständnis des Einflusses der Genexpression auf die EOD-Diversifizierung bei afrikanischen schwach elektrischen Fischen dar.
KW  - tropical freshwater fish
KW  - weakly electric fish
KW  - genomics
KW  - transcriptomics
KW  - Genomik
KW  - Transkriptomik
KW  - tropische Süßwasserfische
KW  - schwach elektrischer Fisch
Y1  - 2024
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-630172
ER  - 
TY  - GEN
A1  - Lenzner, Bernd
A1  - Magallon, Susana
A1  - Dawson, Wayne
A1  - Kreft, Holger
A1  - König, Christian
A1  - Pergl, Jan
A1  - Pysek, Petr
A1  - Weigelt, Patrick
A1  - van Kleunen, Mark
A1  - Winter, Marten
A1  - Dullinger, Stefan
A1  - Essl, Franz
T1  - Role of diversification rates and evolutionary history as a driver of plant naturalization success
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Human introductions of species beyond their natural ranges and their subsequent establishment are defining features of global environmental change. However, naturalized plants are not uniformly distributed across phylogenetic lineages, with some families contributing disproportionately more to the global alien species pool than others. Additionally, lineages differ in diversification rates, and high diversification rates have been associated with characteristics that increase species naturalization success. Here, we investigate the role of diversification rates in explaining the naturalization success of angiosperm plant families. 
We use five global data sets that include native and alien plant species distribution, horticultural use of plants, and a time-calibrated angiosperm phylogeny. Using phylogenetic generalized linear mixed models, we analysed the effect of diversification rate, different geographical range measures, and horticultural use on the naturalization success of plant families. 
We show that a family's naturalization success is positively associated with its evolutionary history, native range size, and economic use. Investigating interactive effects of these predictors shows that native range size and geographic distribution additionally affect naturalization success. High diversification rates and large ranges increase naturalization success, especially of temperate families. 
We suggest this may result from lower ecological specialization in temperate families with large ranges, compared with tropical families with smaller ranges.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1363 
KW  - alien species
KW  - evolution
KW  - geographic distribution
KW  - invasion success
KW  - plant naturalization
KW  - range size
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-569996
SN  - 1866-8372
IS  - 5
ER  - 
TY  - GEN
A1  - Romero-Munoz, Alfredo
A1  - Fandos, Guillermo
A1  - Benítez-López, Ana
A1  - Kuemmerle, Tobias
T1  - Habitat destruction and overexploitation drive widespread declines in all facets of mammalian diversity in the Gran Chaco
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Global biodiversity is under high and rising anthropogenic pressure. Yet, how the taxonomic, phylogenetic, and functional facets of biodiversity are affected by different threats over time is unclear. This is particularly true for the two main drivers of the current biodiversity crisis: habitat destruction and overexploitation. We provide the first long-term assessment of multifaceted biodiversity changes caused by these threats for any tropical region. Focussing on larger mammals in South America's 1.1 million km(2) Gran Chaco region, we assessed changes in multiple biodiversity facets between 1985 and 2015, determined which threats drive those changes, and identified remaining key areas for all biodiversity facets. Using habitat and threat maps, we found, first, that between 1985 and 2015 taxonomic (TD), phylogenetic (PD) and functional (FD) diversity all declined drastically across over half of the area assessed. FD declined about 50% faster than TD and PD, and these declines were mainly driven by species loss, rather than species turnover. Second, habitat destruction, hunting, and both threats together contributed similar to 57%, similar to 37%, and similar to 6% to overall facet declines, respectively. However, hunting pressure increased where TD and PD declined most strongly, whereas habitat destruction disproportionally contributed to FD declines. Third, just 23% of the Chaco would have to be protected to safeguard the top 17% of all three facets. Our findings uncover a widespread impoverishment of mammal species richness, evolutionary history, and ecological functions across broad areas of the Chaco due to increasing habitat destruction and hunting. Moreover, our results pinpoint key areas that should be preserved and managed to maintain all facets of mammalian diversity across the Chaco. More generally, our work highlights how long-term changes in biodiversity facets can be assessed and attributed to specific threats, to better understand human impacts on biodiversity and to guide conservation planning to mitigate them.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1370 
KW  - biodiversity facets
KW  - extinction drivers
KW  - functional diversity
KW  - functional richness
KW  - overhunting
KW  - phylogenetic diversity
KW  - taxonomic
KW  - diversity
KW  - traits
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-567696
SN  - 1866-8372
IS  - 4
ER  - 
TY  - THES
A1  - Kersting, Katerina
T1  - Development of a CRISPR/Cas gene editing technique for the coccolithophore Chrysotila carterae
Y1  - 2024
ER  - 
TY  - JOUR
A1  - Milles, Alexander Benedikt
A1  - Dammhahn, Melanie
A1  - Jeltsch, Florian
A1  - Schlägel, Ulrike
A1  - Grimm, Volker
T1  - Fluctuations in density-dependent selection drive the evolution of a pace-of-life syndrome within and between populations
JF  - The American naturalist : a bi-monthly journal devoted to the advancement and correlation of the biological sciences
N2  - The pace-of-life syndrome (POLS) hypothesis posits that suites of traits are correlated along a slow-fast continuum owing to life history trade-offs. Despite widespread adoption, environmental conditions driving the emergence of POLS remain unclear. A recently proposed conceptual framework of POLS suggests that a slow-fast continuum should align to fluctuations in density-dependent selection. We tested three key predictions made by this framework with an ecoevolutionary agent-based population model. Selection acted on responsiveness (behavioral trait) to interpatch resource differences and the reproductive investment threshold (life history trait). Across environments with density fluctuations of different magnitudes, we observed the emergence of a common axis of trait covariation between and within populations (i.e., the evolution of a POLS). Slow-type (fast-type) populations with high (low) responsiveness and low (high) reproductive investment threshold were selected at high (low) population densities and less (more) intense and frequent density fluctuations. In support of the predictions, fast-type populations contained a higher degree of variation in traits and were associated with higher intrinsic reproductive rate (r(0)) and higher sensitivity to intraspecific competition (gamma), pointing to a universal trade-off. While our findings support that POLS aligns with density-dependent selection, we discuss possible mechanisms that may lead to alternative evolutionary pathways.
KW  - pace-of-life syndrome
KW  - density dependence
KW  - life history
KW  - trait
KW  - variation
KW  - model
KW  - personality
Y1  - 2022
U6  - https://doi.org/10.1086/718473
SN  - 0003-0147
SN  - 1537-5323
VL  - 199
IS  - 4
SP  - E124
EP  - E139
PB  - Univ. of Chicago Press
CY  - Chicago
ER  - 
TY  - GEN
A1  - Eckert, Silvia
A1  - Herden, Jasmin
A1  - Stift, Marc
A1  - Joshi, Jasmin Radha
A1  - van Kleunen, Mark
T1  - Manipulation of cytosine methylation does not remove latitudinal clines in two invasive goldenrod species in Central Europe
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Invasive species frequently differentiate phenotypically in novel environments within a few generations, often even with limited genetic variation. For the invasive plants Solidago canadensis and S. gigantea, we tested whether such differentiation might have occurred through heritable epigenetic changes in cytosine methylation. In a 2-year common-garden experiment, we grew plants from seeds collected along a latitudinal gradient in their non-native Central European range to test for trait differentiation and whether differentiation disappeared when seeds were treated with the demethylation agent zebularine. Microsatellite markers revealed no population structure along the latitudinal gradient in S. canadensis, but three genetic clusters in S. gigantea. Solidago canadensis showed latitudinal clines in flowering phenology and growth. In S. gigantea, the number of clonal offspring decreased with latitude. Although zebularine had a significant effect on early growth, probably through effects on cytosine methylation, latitudinal clines remained (or even got stronger) in plants raised from seeds treated with zebularine. Thus, our experiment provides no evidence that epigenetic mechanisms by selective cytosine methylation contribute to the observed phenotypic differentiation in invasive goldenrods in Central Europe.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1378 
KW  - common‐garden experiment
KW  - epigenetic variation
KW  - microsatellites
KW  - Solidago canadensis
KW  - Solidago gigantea
KW  - zebularine
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-569528
SN  - 1866-8372
IS  - 1
ER  - 
TY  - GEN
A1  - Fichtner, Franziska
A1  - Barbier, Francois F.
A1  - Annunziata, Maria Grazia
A1  - Feil, Regina
A1  - Olas, Justyna Jadwiga
A1  - Müller-Röber, Bernd
A1  - Stitt, Mark
A1  - Beveridge, Christine A.
A1  - Lunn, John Edward
T1  - Regulation of shoot branching in arabidopsis by trehalose 6-phosphate
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Trehalose 6-phosphate (Tre6P) is a sucrose signalling metabolite that has been implicated in regulation of shoot branching, but its precise role is not understood. 

We expressed tagged forms of TREHALOSE-6-PHOSPHATE SYNTHASE1 (TPS1) to determine where Tre6P is synthesized in arabidopsis (Arabidopsis thaliana), and investigated the impact of localized changes in Tre6P levels, in axillary buds or vascular tissues, on shoot branching in wild-type and branching mutant backgrounds. 

TPS1 is expressed in axillary buds and the subtending vasculature, as well as in the leaf and stem vasculature. Expression of a heterologous Tre6P phosphatase (TPP) to lower Tre6P in axillary buds strongly delayed bud outgrowth in long days and inhibited branching in short days. TPP expression in the vasculature also delayed lateral bud outgrowth and decreased branching. Increased Tre6P in the vasculature enhanced branching and was accompanied by higher expression of FLOWERING LOCUS T (FT) and upregulation of sucrose transporters. Increased vascular Tre6P levels enhanced branching in branched1 but not in ft mutant backgrounds.

These results provide direct genetic evidence of a local role for Tre6P in regulation of axillary bud outgrowth within the buds themselves, and also connect Tre6P with systemic regulation of shoot branching via FT.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1383 
KW  - Arabidopsis thaliana (arabidopsis)
KW  - axillary bud
KW  - branching
KW  - sucrose
KW  - sugar signalling
KW  - trehalose 6‐ phosphate (Tre6P)
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-569564
SN  - 1866-8372
IS  - 4
ER  - 
TY  - GEN
A1  - Zaplata, Markus Klemens
A1  - Nhabanga, Abel
A1  - Stalmans, Marc
A1  - Volpers, Thomas
A1  - Burkart, Michael
A1  - Sperfeld, Erik
T1  - Grasses cope with high-contrast ecosystem conditions in the large outflow of the Banhine wetlands, Mozambique
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Ecosystems with highly pulsed water supply must be better understood as climate change may increase frequency and severity of intense storms, droughts and floods. Here we collected data over 3 years (2016-2018) in the episodic wetland outflow channel (Aluize), Banhine National Park, in which the system state changed from dry to wet to dry. Field sampling included vegetation records, small-scale vegetation zoning, the seed bank and water and soil quality. The same main plant species were found in both dry and wet conditions across the riverbed of the outflow channel. We found only very few diaspores of plants in the soil after prolonged drought. In the subsequent flooded state, we examined very dense vegetation on the water surface, which was dominated by the gramineous species Paspalidium obtusifolium. This species formed a compact floating mat that was rooted to the riverbed. The Cyperaceae Bolboschoenus glaucus showed high clonal growth in the form of root tubers, which likely serve as important food reservoir during drought. Soil and water analyses do not indicate a limitation by nutrients. We outline how resident people may change the plant community structure with an increasing practice of setting fire to the meadows in the dried-up riverbed to facilitate plant regrowth as food for their livestock.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1386 
KW  - Aluize
KW  - biological soil crusts
KW  - Changane
KW  - droughts
KW  - floating mat
KW  - flooded grasslands
KW  - multi‐ year flooding cycle
KW  - plant clonality
KW  - seed bank
KW  - temporary wetland
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-573515
SN  - 1866-8372
IS  - 1
ER  - 
TY  - THES
A1  - Stange, Maike
T1  - A study on Coronin-A and Aip1 function in motility of Dictyostelium discoideum and on Aip1 interchangeability between Dictyostelium discoideum and Arabidopsis thaliana
T1  - Studie über die Funktion von Coronin-A und Aip1 bei der Motilität von Dictyostelium discoideum und zur Aip1-Austauschbarkeit zwischen Dictyostelium discoideum und Arabidopsis thaliana
N2  - Actin is one of the most highly conserved proteins in eukaryotes and distinct actin-related proteins with filament-forming properties are even found in prokaryotes. Due to these commonalities, actin-modulating proteins of many species share similar structural properties and proposed functions. The polymerization and depolymerization of actin are critical processes for a cell as they can contribute to shape changes to adapt to its environment and to move and distribute nutrients and cellular components within the cell. However, to what extent functions of actin-binding proteins are conserved between distantly related species, has only been addressed in a few cases. In this work, functions of Coronin-A (CorA) and Actin-interacting protein 1 (Aip1), two proteins involved in actin dynamics, were characterized. In addition, the interchangeability and function of Aip1 were investigated in two phylogenetically distant model organisms. The flowering plant Arabidopsis thaliana (encoding two homologs, AIP1-1 and AIP1-2) and in the amoeba Dictyostelium discoideum (encoding one homolog, DdAip1) were chosen because the functions of their actin cytoskeletons may differ in many aspects. Functional analyses between species were conducted for AIP1 homologs as flowering plants do not harbor a CorA gene. 
In the first part of the study, the effect of four different mutation methods on the function of Coronin-A protein and the resulting phenotype in D. discoideum was revealed in two genetic knockouts, one RNAi knockdown and a sudden loss-of-function mutant created by chemical-induced dislocation (CID). The advantages and disadvantages of the different mutation methods on the motility, appearance and development of the amoebae were investigated, and the results showed that not all observed properties were affected with the same intensity. Remarkably, a new combination of Selection-Linked Integration and CID could be established. 
In the second and third parts of the thesis, the exchange of Aip1 between plant and amoeba was carried out. For A. thaliana, the two homologs (AIP1-1 and AIP1-2) were analyzed for functionality as well as in D. discoideum. In the Aip1-deficient amoeba, rescue with AIP1-1 was more effective than with AIP1-2. The main results in the plant showed that in the aip1-2 mutant background, reintroduced AIP1-2 displayed the most efficient rescue and A. thaliana AIP1-1 rescued better than DdAip1. The choice of the tagging site was important for the function of Aip1 as steric hindrance is a problem. The DdAip1 was less effective when tagged at the C-terminus, while the plant AIP1s showed mixed results depending on the tag position. In conclusion, the foreign proteins partially rescued phenotypes of mutant plants and mutant amoebae, despite the organisms only being very distantly related in evolutionary terms.
N2  - Actin ist eines der am stärksten konservierten Proteine in Eukaryoten und sogar Prokaryoten weisen Aktin-ähnliche Proteine mit filamentbildenden Eigenschaften auf. Aufgrund dieser Gemeinsamkeiten teilen Aktin-modulierte Proteine vieler Arten ähnliche strukturelle Eigenschaften und vermutlich auch Funktionen. Die Polymerisierung und Depolymerisation von Aktin sind kritische Prozesse für eine Zelle, da sie zu Zellformänderungen beitragen können, um sich an die Umgebung anzupassen und Nährstoffe sowie zelluläre Komponenten innerhalb der Zelle zu bewegen und zu verteilen. Inwieweit die Funktionen von Aktin-bindenden Proteinen zwischen entfernt verwandten Arten funktionell konserviert sind, wurde jedoch nur in wenigen Fällen untersucht. In dieser Arbeit wurden Funktionen von Coronin-A (CorA) und Actin-interagierendem Protein 1 (AIP1), zweier an der Aktindynamik beteiligter Proteine, charakterisiert. Darüber hinaus wurde die Austauschbarkeit und Funktion von AIP1 in zwei phylogenetisch entfernten Modellorganismen untersucht. Die Blütenpflanze Arabidopsis thaliana (kodiert für zwei Homologe: AIP1-1 und AIP1-2) und die Amöbe Dictyostelium discoideum (kodiert für ein Homolog: DdAip1) wurden ausgewählt, weil die Funktionen ihrer Aktin-Zytoskelette in mehreren Aspekten verschieden sein könnten. Funktionelle Analysen zwischen Arten wurden für AIP1-Homologe durchgeführt, da Blütenpflanzen kein CorA Gen tragen. 
Im ersten Teil der Arbeit wurde die Wirkung von vier verschiedenen Mutationsmethoden auf die Funktion des CorA-Proteins und des resultierenden Phänotyps in D. discoideum in zwei genetischen Knockouts, einem RNAi Knockdown und einem durch chemisch induzierte Delokalisierung (CID) erzeugten Mutanten geprüft. Die Vor- und Nachteile der Methoden zur Motilität, des Aussehens und der Entwicklung der Amöben wurden untersucht. Die Ergebnisse zeigten, dass nicht alle beobachteten Eigenschaften mit der gleichen Intensität beeinflusst wurden. Hierbei wurde eine neue Methodenkombination aus selektionsgebundener Integration und CID etabliert. 
Im zweiten und im dritten Teil der Arbeit wurde der Austausch von AIP1 zwischen Pflanze und Amöben durchgeführt. Die zwei A. thaliana-Homologe AIP1-1 und AIP1-2 wurden auf Funktionalität in D. discoideum geprüft. In Aip1-defizienten Amöben war die Rettung mit AIP1-1 effektiver als bei AIP1-2. Die Hauptergebnisse der Arbeit wiesen darauf hin, dass AIP1-2 im aip1.2-1 act7 Mutantenhintergrund die effizienteste Rettung zeigte, während A. thaliana AIP1-1 effizienter rettete als DdAip1. Die Auswahl der Tagging-Site war für die AIP1-Funktion bedeutend, da sterische Hinderung eine Rolle spielen könnte. DdAip1 war weniger effektiv, wenn es am C-Terminus fusioniert war, während die Proteinfusionen der A. thaliana AIP1s je nach Position der „tags“ unterschiedliche Ergebnisse zeigten. Zusammenfassend retteten die fremden Proteine teilweise Phänotypen von mutierten Pflanzen und mutierten Amöben, obwohl die Organismen evolutionär weit entfernt verwandt sind.
KW  - actin
KW  - cell motility
KW  - plant growth
KW  - selection-linked integration
KW  - chemically induced dislocation
KW  - interspecies interchange
KW  - Aktin
KW  - Zellmotilität
KW  - Pflanzenwachstum
KW  - Selection-Linked Integration
KW  - chemisch-induzierte Dislokation
KW  - Austausch zwischen zwei Spezies
Y1  - 2024
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-628569
ER  - 
TY  - GEN
A1  - Ehrlich, Elias
A1  - Kath, Nadja Jeanette
A1  - Gaedke, Ursula
T1  - The shape of a defense-growth trade-off governs seasonal trait dynamics in natural phytoplankton
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Theory predicts that trade-offs, quantifying costs of functional trait adjustments, crucially affect community trait adaptation to altered environmental conditions, but empirical verification is scarce. We evaluated trait dynamics (antipredator defense, maximum growth rate, and phosphate affinity) of a lake phytoplankton community in a seasonally changing environment, using literature trait data and 21 years of species-resolved high-frequency biomass measurements. The trait data indicated a concave defense-growth trade-off, promoting fast-growing species with intermediate defense. With seasonally increasing grazing pressure, the community shifted toward higher defense levels at the cost of lower growth rates along the trade-off curve, while phosphate affinity explained some deviations from it. We discuss how low fitness differences of species, inferred from model simulations, in concert with stabilizing mechanisms, e.g., arising from further trait dimensions, may lead to the observed phytoplankton diversity. In conclusion, quantifying trade-offs is key for predictions of community trait adaptation and biodiversity under environmental change.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1390 
KW  - functional traits
KW  - community ecology
KW  - evolution
KW  - lake
KW  - mechanisms
KW  - diversity
KW  - plankton
KW  - fitness
KW  - maintenance
KW  - coexistence
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-513956
SN  - 1866-8372
IS  - 6
ER  - 
TY  - GEN
A1  - Masigol, Hossein
A1  - Khodaparast, Seyed Akbar
A1  - Mostowfizadeh-Ghalamfarsa, Reza
A1  - Rojas-Jimenez, Keilor
A1  - Woodhouse, Jason Nicholas
A1  - Neubauer, Darshan
A1  - Grossart, Hans-Peter
T1  - Taxonomical and functional diversity of Saprolegniales in Anzali lagoon, Iran
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Studies on the diversity, distribution and ecological role of Saprolegniales (Oomycota) in freshwater ecosystems are currently receiving attention due to a greater understanding of their role in carbon cycling in various aquatic ecosystems. In this study, we characterized several Saprolegniales species isolated from Anzali lagoon, Gilan province, Iran, using morphological and molecular methods. Four species of Saprolegnia were identified, including S. anisospora and S. diclina as first reports for Iran, as well as Achlya strains, which were closely related to A. bisexualis, A. debaryana and A. intricata. Evaluation of the ligno-, cellulo- and chitinolytic activities was performed using plate assay methods. Most of the Saprolegniales isolates were obtained in autumn, and nearly 50% of the strains showed chitinolytic and cellulolytic activities. However, only a few Saprolegniales strains showed lignolytic activities. This study has important implications for better understanding the ecological niche of oomycetes, and to differentiate them from morphologically similar, but functionally different aquatic fungi in freshwater ecosystems.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1395 
KW  - Achlya
KW  - Saprolegnia
KW  - aquatic ecosystems
KW  - carbon cycling
KW  - polymer degradation
KW  - Saprolegniaceae
KW  - Achlyaceae
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-515820
SN  - 1866-8372
IS  - 1
ER  - 
TY  - JOUR
A1  - Masigol, Hossein
A1  - Khodaparast, Seyed Akbar
A1  - Mostowfizadeh-Ghalamfarsa, Reza
A1  - Rojas-Jimenez, Keilor
A1  - Woodhouse, Jason Nicholas
A1  - Neubauer, Darshan
A1  - Grossart, Hans-Peter
T1  - Taxonomical and functional diversity of Saprolegniales in Anzali lagoon, Iran
JF  - Aquatic Ecology
N2  - Studies on the diversity, distribution and ecological role of Saprolegniales (Oomycota) in freshwater ecosystems are currently receiving attention due to a greater understanding of their role in carbon cycling in various aquatic ecosystems. In this study, we characterized several Saprolegniales species isolated from Anzali lagoon, Gilan province, Iran, using morphological and molecular methods. Four species of Saprolegnia were identified, including S. anisospora and S. diclina as first reports for Iran, as well as Achlya strains, which were closely related to A. bisexualis, A. debaryana and A. intricata. Evaluation of the ligno-, cellulo- and chitinolytic activities was performed using plate assay methods. Most of the Saprolegniales isolates were obtained in autumn, and nearly 50% of the strains showed chitinolytic and cellulolytic activities. However, only a few Saprolegniales strains showed lignolytic activities. This study has important implications for better understanding the ecological niche of oomycetes, and to differentiate them from morphologically similar, but functionally different aquatic fungi in freshwater ecosystems.
KW  - Achlya
KW  - Saprolegnia
KW  - aquatic ecosystems
KW  - carbon cycling
KW  - polymer degradation
KW  - Saprolegniaceae
KW  - Achlyaceae
Y1  - 2020
U6  - https://doi.org/10.1007/s10452-019-09745-w
SN  - 1573-5125
SN  - 1386-2588
VL  - 54
IS  - 1
SP  - 323
EP  - 336
PB  - Springer Science
CY  - Dordrecht
ER  - 
TY  - JOUR
A1  - Stanke, Sandra
A1  - Wenger, Christian
A1  - Bier, Frank Fabian
A1  - Hölzel, Ralph
T1  - AC electrokinetic immobilization of influenza virus
JF  - Electrophoresis : microfluids & proteomics
N2  - The use of alternating current (AC) electrokinetic forces, like dielectrophoresis and AC electroosmosis, as a simple and fast method to immobilize sub-micrometer objects onto nanoelectrode arrays is presented. Due to its medical relevance, the influenza virus is chosen as a model organism. One of the outstanding features is that the immobilization of viral material to the electrodes can be achieved permanently, allowing subsequent handling independently from the electrical setup. Thus, by using merely electric fields, we demonstrate that the need of prior chemical surface modification could become obsolete. The accumulation of viral material over time is observed by fluorescence microscopy. The influences of side effects like electrothermal fluid flow, causing a fluid motion above the electrodes and causing an intensity gradient within the electrode array, are discussed. Due to the improved resolution by combining fluorescence microscopy with deconvolution, it is shown that the viral material is mainly drawn to the electrode edge and to a lesser extent to the electrode surface. Finally, areas of application for this functionalization technique are presented.
KW  - AC electrokinetics
KW  - AC electroosmosis
KW  - dielectrophoresis
KW  - influenza virus
KW  - nanoelectrodes
Y1  - 2022
U6  - https://doi.org/10.1002/elps.202100324
SN  - 0173-0835
SN  - 1522-2683
VL  - 43
IS  - 12
SP  - 1309
EP  - 1321
PB  - Wiley-Blackwell
CY  - Weinheim
ER  - 
TY  - JOUR
A1  - Tong, Hao
A1  - Nankar, Amol N.
A1  - Liu, Jintao
A1  - Todorova, Velichka
A1  - Ganeva, Daniela
A1  - Grozeva, Stanislava
A1  - Tringovska, Ivanka
A1  - Pasev, Gancho
A1  - Radeva-Ivanova, Vesela
A1  - Gechev, Tsanko
A1  - Kostova, Dimitrina
A1  - Nikoloski, Zoran
T1  - Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits
JF  - Horticulture research
N2  - Selection of high-performance lines with respect to traits of interest is a key step in plant breeding. Genomic prediction allows to determine the genomic estimated breeding values of unseen lines for trait of interest using genetic markers, e.g. single-nucleotide polymorphisms (SNPs), and machine learning approaches, which can therefore shorten breeding cycles, referring to genomic selection (GS). Here, we applied GS approaches in two populations of Solanaceous crops, i.e. tomato and pepper, to predict morphometric and colorimetric traits. The traits were measured by using scoring-based conventional descriptors (CDs) as well as by Tomato Analyzer (TA) tool using the longitudinally and latitudinally cut fruit images. The GS performance was assessed in cross-validations of classification-based and regression-based machine learning models for CD and TA traits, respectively. The results showed the usage of TA traits and tag SNPs provide a powerful combination to predict morphology and color-related traits of Solanaceous fruits. The highest predictability of 0.89 was achieved for fruit width in pepper, with an average predictability of 0.69 over all traits. The multi-trait GS models are of slightly better predictability than single-trait models for some colorimetric traits in pepper. While model validation performs poorly on wild tomato accessions, the usage as many as one accession per wild species in the training set can increase the transferability of models to unseen populations for some traits (e.g. fruit shape for which predictability in unseen scenario increased from zero to 0.6). Overall, GS approaches can assist the selection of high-performance Solanaceous fruits in crop breeding.
Y1  - 2022
U6  - https://doi.org/10.1093/hr/uhac072
SN  - 2052-7276
VL  - 9
PB  - Oxford Univ. Press
CY  - Cary
ER  - 
TY  - GEN
A1  - Crawford, Tim
A1  - Karamat, Fazeelat
A1  - Lehotai, Nóra
A1  - Rentoft, Matilda
A1  - Blomberg, Jeanette
A1  - Strand, Åsa
A1  - Björklund, Stefan
T1  - Specific functions for mediator complex subunits from different modules in the transcriptional response of arabidopsis thaliana to abiotic stress
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Adverse environmental conditions are detrimental to plant growth and development. Acclimation to abiotic stress conditions involves activation of signaling pathways which often results in changes in gene expression via networks of transcription factors (TFs). Mediator is a highly conserved co-regulator complex and an essential component of the transcriptional machinery in eukaryotes. Some Mediator subunits have been implicated in stress-responsive signaling pathways; however, much remains unknown regarding the role of plant Mediator in abiotic stress responses. Here, we use RNA-seq to analyze the transcriptional response of Arabidopsis thaliana to heat, cold and salt stress conditions. We identify a set of common abiotic stress regulons and describe the sequential and combinatorial nature of TFs involved in their transcriptional regulation. Furthermore, we identify stress-specific roles for the Mediator subunits MED9, MED16, MED18 and CDK8, and putative TFs connecting them to different stress signaling pathways. Our data also indicate different modes of action for subunits or modules of Mediator at the same gene loci, including a co-repressor function for MED16 prior to stress. These results illuminate a poorly understood but important player in the transcriptional response of plants to abiotic stress and identify target genes and mechanisms as a prelude to further biochemical characterization.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1399 
KW  - regulate gene expression
KW  - signal transduction
KW  - circadian clock
KW  - plant Mediator
KW  - salicylic-acid
KW  - activation
KW  - jasmonate
KW  - network
KW  - defense
KW  - MED16
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-513666
SN  - 1866-8372
IS  - 1
ER  - 
TY  - GEN
A1  - Moradian, Hanieh
A1  - Roch, Toralf
A1  - Lendlein, Andreas
A1  - Gossen, Manfred
T1  - mRNA transfection-induced activation of primary human monocytes and macrophages
BT  - Dependence on carrier system and nucleotide modifcation
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Monocytes and macrophages are key players in maintaining immune homeostasis. Identifying strategies to manipulate their functions via gene delivery is thus of great interest for immunological research and biomedical applications. We set out to establish conditions for mRNA transfection in hard-to-transfect primary human monocytes and monocyte-derived macrophages due to the great potential of gene expression from in vitro transcribed mRNA for modulating cell phenotypes. mRNA doses, nucleotide modifications, and different carriers were systematically explored in order to optimize high mRNA transfer rates while minimizing cell stress and immune activation. We selected three commercially available mRNA transfection reagents including liposome and polymer-based formulations, covering different application spectra. Our results demonstrate that liposomal reagents can particularly combine high gene transfer rates with only moderate immune cell activation. For the latter, use of specific nucleotide modifications proved essential. In addition to improving efficacy of gene transfer, our findings address discrete aspects of innate immune activation using cytokine and surface marker expression, as well as cell viability as key readouts to judge overall transfection efficiency. The impact of this study goes beyond optimizing transfection conditions for immune cells, by providing a framework for assessing new gene carrier systems for monocyte and macrophage, tailored to specific applications.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1403 
KW  - sirna transfection
KW  - mediated delivery
KW  - gene delivery
KW  - efficient
KW  - immunogenicity
KW  - lipoplexes
KW  - cells
KW  - therapeutics
KW  - polarization
KW  - pathways
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-515694
SN  - 1866-8372
IS  - 1
ER  - 
TY  - JOUR
A1  - Moradian, Hanieh
A1  - Roch, Toralf
A1  - Lendlein, Andreas
A1  - Gossen, Manfred
T1  - mRNA transfection-induced activation of primary human monocytes and macrophages
BT  - Dependence on carrier system and nucleotide modifcation
JF  - Scientific reports
N2  - Monocytes and macrophages are key players in maintaining immune homeostasis. Identifying strategies to manipulate their functions via gene delivery is thus of great interest for immunological research and biomedical applications. We set out to establish conditions for mRNA transfection in hard-to-transfect primary human monocytes and monocyte-derived macrophages due to the great potential of gene expression from in vitro transcribed mRNA for modulating cell phenotypes. mRNA doses, nucleotide modifications, and different carriers were systematically explored in order to optimize high mRNA transfer rates while minimizing cell stress and immune activation. We selected three commercially available mRNA transfection reagents including liposome and polymer-based formulations, covering different application spectra. Our results demonstrate that liposomal reagents can particularly combine high gene transfer rates with only moderate immune cell activation. For the latter, use of specific nucleotide modifications proved essential. In addition to improving efficacy of gene transfer, our findings address discrete aspects of innate immune activation using cytokine and surface marker expression, as well as cell viability as key readouts to judge overall transfection efficiency. The impact of this study goes beyond optimizing transfection conditions for immune cells, by providing a framework for assessing new gene carrier systems for monocyte and macrophage, tailored to specific applications.
KW  - sirna transfection
KW  - mediated delivery
KW  - gene delivery
KW  - efficient
KW  - immunogenicity
KW  - lipoplexes
KW  - cells
KW  - therapeutics
KW  - polarization
KW  - pathways
Y1  - 2020
U6  - https://doi.org/10.1038/s41598-020-60506-4
SN  - 2045-2322
VL  - 10
IS  - 1
SP  - 1
EP  - 15
PB  - Springer Nature
CY  - London
ER  - 
TY  - GEN
A1  - Bäurle, Isabel
A1  - Trindade, Inês
T1  - Chromatin regulation of somatic abiotic stress memory
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - In nature, plants are often subjected to periods of recurrent environmental stress that can strongly affect their development and productivity. To cope with these conditions, plants can remember a previous stress, which allows them to respond more efficiently to a subsequent stress, a phenomenon known as priming. This ability can be maintained at the somatic level for a few days or weeks after the stress is perceived, suggesting that plants can store information of a past stress during this recovery phase. While the immediate responses to a single stress event have been extensively studied, knowledge on priming effects and how stress memory is stored is still scarce. At the molecular level, memory of a past condition often involves changes in chromatin structure and organization, which may be maintained independently from transcription. In this review, we will summarize the most recent developments in the field and discuss how different levels of chromatin regulation contribute to priming and plant abiotic stress memory.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1408 
KW  - abiotic stress
KW  - chromatin regulation
KW  - heat stress memory
KW  - histone modifications, priming
KW  - transcriptional memory
KW  - vernalization
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-516668
SN  - 1866-8372
IS  - 17
ER  - 
TY  - GEN
A1  - Obbard, Darren J.
A1  - Shi, Mang
A1  - Roberts, Katherine E.
A1  - Longdon, Ben
A1  - Dennis, Alice B.
T1  - A new lineage of segmented RNA viruses infecting animals
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Metagenomic sequencing has revolutionised our knowledge of virus diversity, with new virus sequences being reported faster than ever before. However, virus discovery from metagenomic sequencing usually depends on detectable homology: without a sufficiently close relative, so-called ‘dark’ virus sequences remain unrecognisable. An alternative approach is to use virus-identification methods that do not depend on detecting homology, such as virus recognition by host antiviral immunity. For example, virus-derived small RNAs have previously been used to propose ‘dark’ virus sequences associated with the Drosophilidae (Diptera). Here, we combine published Drosophila data with a comprehensive search of transcriptomic sequences and selected meta-transcriptomic datasets to identify a completely new lineage of segmented positive-sense single-stranded RNA viruses that we provisionally refer to as the Quenyaviruses. Each of the five segments contains a single open reading frame, with most encoding proteins showing no detectable similarity to characterised viruses, and one sharing a small number of residues with the RNA-dependent RNA polymerases of single- and double-stranded RNA viruses. Using these sequences, we identify close relatives in approximately 20 arthropods, including insects, crustaceans, spiders, and a myriapod. Using a more conserved sequence from the putative polymerase, we further identify relatives in meta-transcriptomic datasets from gut, gill, and lung tissues of vertebrates, reflecting infections of vertebrates or of their associated parasites. Our data illustrate the utility of small RNAs to detect viruses with limited sequence conservation, and provide robust evidence for a new deeply divergent and phylogenetically distinct RNA virus lineage.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1411 
KW  - metagenome
KW  - RNA virus
KW  - dark virus
KW  - arthropod
KW  - RNA interference
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-516040
SN  - 1866-8372
IS  - 1
ER  - 
TY  - JOUR
A1  - Obbard, Darren J.
A1  - Shi, Mang
A1  - Roberts, Katherine E.
A1  - Longdon, Ben
A1  - Dennis, Alice B.
T1  - A new lineage of segmented RNA viruses infecting animals
JF  - Virus Evolution
N2  - Metagenomic sequencing has revolutionised our knowledge of virus diversity, with new virus sequences being reported faster than ever before. However, virus discovery from metagenomic sequencing usually depends on detectable homology: without a sufficiently close relative, so-called ‘dark’ virus sequences remain unrecognisable. An alternative approach is to use virus-identification methods that do not depend on detecting homology, such as virus recognition by host antiviral immunity. For example, virus-derived small RNAs have previously been used to propose ‘dark’ virus sequences associated with the Drosophilidae (Diptera). Here, we combine published Drosophila data with a comprehensive search of transcriptomic sequences and selected meta-transcriptomic datasets to identify a completely new lineage of segmented positive-sense single-stranded RNA viruses that we provisionally refer to as the Quenyaviruses. Each of the five segments contains a single open reading frame, with most encoding proteins showing no detectable similarity to characterised viruses, and one sharing a small number of residues with the RNA-dependent RNA polymerases of single- and double-stranded RNA viruses. Using these sequences, we identify close relatives in approximately 20 arthropods, including insects, crustaceans, spiders, and a myriapod. Using a more conserved sequence from the putative polymerase, we further identify relatives in meta-transcriptomic datasets from gut, gill, and lung tissues of vertebrates, reflecting infections of vertebrates or of their associated parasites. Our data illustrate the utility of small RNAs to detect viruses with limited sequence conservation, and provide robust evidence for a new deeply divergent and phylogenetically distinct RNA virus lineage.
KW  - metagenome
KW  - RNA virus
KW  - dark virus
KW  - arthropod
KW  - RNA interference
Y1  - 2020
U6  - https://doi.org/10.1093/ve/vez061
SN  - 2057-1577
VL  - 6
IS  - 1
SP  - 1
EP  - 10
PB  - Oxford Univ. Press
CY  - Oxford
ER  - 
TY  - JOUR
A1  - Zwaag, Jelle
A1  - Horst, Rob ter
A1  - Blaženović, Ivana
A1  - Stößel, Daniel
A1  - Ratter, Jacqueline
A1  - Worseck, Josephine M.
A1  - Schauer, Nicolas
A1  - Stienstra, Rinke
A1  - Netea, Mihai G.
A1  - Jahn, Dieter
A1  - Pickkers, Peter
A1  - Kox, Matthijs
T1  - Involvement of lactate and pyruvate in the anti-inflammatory effects exerted by voluntary activation of the sympathetic nervous system
JF  - Metabolites
N2  - We recently demonstrated that the sympathetic nervous system can be voluntarily activated following a training program consisting of cold exposure, breathing exercises, and meditation. This resulted in profound attenuation of the systemic inflammatory response elicited by lipopolysaccharide (LPS) administration. Herein, we assessed whether this training program affects the plasma metabolome and if these changes are linked to the immunomodulatory effects observed. A total of 224 metabolites were identified in plasma obtained from 24 healthy male volunteers at six timepoints, of which 98 were significantly altered following LPS administration. Effects of the training program were most prominent shortly after initiation of the acquired breathing exercises but prior to LPS administration, and point towards increased activation of the Cori cycle. Elevated concentrations of lactate and pyruvate in trained individuals correlated with enhanced levels of anti-inflammatory interleukin (IL)-10. In vitro validation experiments revealed that co-incubation with lactate and pyruvate enhances IL-10 production and attenuates the release of pro-inflammatory IL-1 beta and IL-6 by LPS-stimulated leukocytes. Our results demonstrate that practicing the breathing exercises acquired during the training program results in increased activity of the Cori cycle. Furthermore, this work uncovers an important role of lactate and pyruvate in the anti-inflammatory phenotype observed in trained subjects.
KW  - metabolomics
KW  - LPS
KW  - endotoxin
KW  - pyruvate
KW  - lactate
KW  - cytokines
KW  - inflammation
KW  - human endotoxemia
KW  - cori cycle
KW  - warburg effect
Y1  - 2020
U6  - https://doi.org/10.3390/metabo10040148
SN  - 2218-1989
VL  - 10
IS  - 4
SP  - 1
EP  - 18
PB  - MDPI
CY  - Basel
ER  - 
TY  - GEN
A1  - Zwaag, Jelle
A1  - Horst, Rob ter
A1  - Blaženović, Ivana
A1  - Stößel, Daniel
A1  - Ratter, Jacqueline
A1  - Worseck, Josephine M.
A1  - Schauer, Nicolas
A1  - Stienstra, Rinke
A1  - Netea, Mihai G.
A1  - Jahn, Dieter
A1  - Pickkers, Peter
A1  - Kox, Matthijs
T1  - Involvement of lactate and pyruvate in the anti-inflammatory effects exerted by voluntary activation of the sympathetic nervous system
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - We recently demonstrated that the sympathetic nervous system can be voluntarily activated following a training program consisting of cold exposure, breathing exercises, and meditation. This resulted in profound attenuation of the systemic inflammatory response elicited by lipopolysaccharide (LPS) administration. Herein, we assessed whether this training program affects the plasma metabolome and if these changes are linked to the immunomodulatory effects observed. A total of 224 metabolites were identified in plasma obtained from 24 healthy male volunteers at six timepoints, of which 98 were significantly altered following LPS administration. Effects of the training program were most prominent shortly after initiation of the acquired breathing exercises but prior to LPS administration, and point towards increased activation of the Cori cycle. Elevated concentrations of lactate and pyruvate in trained individuals correlated with enhanced levels of anti-inflammatory interleukin (IL)-10. In vitro validation experiments revealed that co-incubation with lactate and pyruvate enhances IL-10 production and attenuates the release of pro-inflammatory IL-1 beta and IL-6 by LPS-stimulated leukocytes. Our results demonstrate that practicing the breathing exercises acquired during the training program results in increased activity of the Cori cycle. Furthermore, this work uncovers an important role of lactate and pyruvate in the anti-inflammatory phenotype observed in trained subjects.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1413 
KW  - metabolomics
KW  - LPS
KW  - endotoxin
KW  - pyruvate
KW  - lactate
KW  - cytokines
KW  - inflammation
KW  - human endotoxemia
KW  - cori cycle
KW  - warburg effect
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-517784
SN  - 1866-8372
IS  - 4
ER  - 
TY  - GEN
A1  - Amen, Rahma
A1  - Nagel, Rebecca
A1  - Hedt, Maximilian
A1  - Kirschbaum, Frank
A1  - Tiedemann, Ralph
T1  - Morphological differentiation in African weakly electric fish (genus Campylomormyrus) relates to substrate preferences
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Under an ecological speciation scenario, the radiation of African weakly electric fish (genus Campylomormyrus) is caused by an adaptation to different food sources, associated with diversification of the electric organ discharge (EOD). This study experimentally investigates a phenotype-environment correlation to further support this scenario. Our behavioural experiments showed that three sympatric Campylomormyrus species with significantly divergent snout morphology differentially react to variation in substrate structure. While the short snout species (C. tamandua) exhibits preference to sandy substrate, the long snout species (C. rhynchophorus) significantly prefers a stone substrate for feeding. A third species with intermediate snout size (C. compressirostris) does not exhibit any substrate preference. This preference is matched with the observation that long-snouted specimens probe deeper into the stone substrate, presumably enabling them to reach prey more distant to the substrate surface. These findings suggest that the diverse feeding apparatus in the genus Campylomormyrus may have evolved in adaptation to specific microhabitats, i.e., substrate structures where these fish forage. Whether the parallel divergence in EOD is functionally related to this adaptation or solely serves as a prezygotic isolation mechanism remains to be elucidated.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1416 
KW  - ecological speciation
KW  - feeding behaviour
KW  - electric fish
KW  - trophic apparatus
KW  - evolutionary ecology
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-518714
SN  - 1866-8372
IS  - 3
ER  - 
TY  - JOUR
A1  - Amen, Rahma
A1  - Nagel, Rebecca
A1  - Hedt, Maximilian
A1  - Kirschbaum, Frank
A1  - Tiedemann, Ralph
T1  - Morphological differentiation in African weakly electric fish (genus Campylomormyrus) relates to substrate preferences
JF  - Evolutionary Ecology
N2  - Under an ecological speciation scenario, the radiation of African weakly electric fish (genus Campylomormyrus) is caused by an adaptation to different food sources, associated with diversification of the electric organ discharge (EOD). This study experimentally investigates a phenotype-environment correlation to further support this scenario. Our behavioural experiments showed that three sympatric Campylomormyrus species with significantly divergent snout morphology differentially react to variation in substrate structure. While the short snout species (C. tamandua) exhibits preference to sandy substrate, the long snout species (C. rhynchophorus) significantly prefers a stone substrate for feeding. A third species with intermediate snout size (C. compressirostris) does not exhibit any substrate preference. This preference is matched with the observation that long-snouted specimens probe deeper into the stone substrate, presumably enabling them to reach prey more distant to the substrate surface. These findings suggest that the diverse feeding apparatus in the genus Campylomormyrus may have evolved in adaptation to specific microhabitats, i.e., substrate structures where these fish forage. Whether the parallel divergence in EOD is functionally related to this adaptation or solely serves as a prezygotic isolation mechanism remains to be elucidated.
KW  - ecological speciation
KW  - feeding behaviour
KW  - electric fish
KW  - trophic apparatus
KW  - evolutionary ecology
Y1  - 2020
U6  - https://doi.org/10.1007/s10682-020-10043-3
SN  - 0269-7653
SN  - 1573-8477
VL  - 34
IS  - 3
SP  - 427
EP  - 437
PB  - Springer Science
CY  - Dordrecht
ER  - 
TY  - JOUR
A1  - Sabrowski, Wiebke
A1  - Dreymann, Nico
A1  - Möller, Anja
A1  - Czepluch, Denise
A1  - Albani, Patricia P.
A1  - Theodoridis, Dimitrios
A1  - Menger, Marcus M.
T1  - The use of high-affinity polyhistidine binders as masking probes for the selection of an NDM-1 specific aptamer
JF  - Scientific reports
N2  - The emergence of carbapenemase-producing multi-drug resistant Enterobacteriaceae poses a dramatic, world-wide health risk. Limited treatment options and a lack of easy-to-use methods for the detection of infections with multi-drug resistant bacteria leave the health-care system with a fast-growing challenge. Aptamers are single stranded DNA or RNA molecules that bind to their targets with high affinity and specificity and can therefore serve as outstanding detection probes. However, an effective aptamer selection process is often hampered by non-specific binding. When selections are carried out against recombinant proteins, purification tags (e.g. polyhistidine) serve as attractive side targets, which may impede protein target binding. In this study, aptamer selection was carried out against N-terminally hexa-histidine tagged New Delhi metallo-ss-lactamase 1. After 14 selection rounds binding to polyhistidine was detected rather than to New Delhi metallo-ss-lactamase 1. Hence, the selection strategy was changed. As one aptamer candidate showed remarkable binding affinity to polyhistidine, it was used as a masking probe and selection was restarted from selection round 10. Finally, after three consecutive selection rounds, an aptamer with specific binding properties to New Delhi metallo-ss-lactamase 1 was identified. This aptamer may serve as a much-needed detection probe for New Delhi metallo-ss-lactamase 1 expressing Enterobacteriaceae.
Y1  - 2022
U6  - https://doi.org/10.1038/s41598-022-12062-2
SN  - 2045-2322
VL  - 12
IS  - 1
PB  - Macmillan Publishers Limited, part of Springer Nature
CY  - London
ER  - 
TY  - JOUR
A1  - Moreno-Romero, Jordi
A1  - Probst, Aline V.
A1  - Trindade, Inês
A1  - Kalyanikrishna, 
A1  - Engelhorn, Julia
A1  - Farrona, Sara
T1  - Looking At the Past and Heading to the Future
BT  - Meeting Summary of the 6th European Workshop on Plant Chromatin 2019 in Cologne, Germany
JF  - Frontiers in Plant Science
N2  - In June 2019, more than a hundred plant researchers met in Cologne, Germany, for the 6th European Workshop on Plant Chromatin (EWPC). This conference brought together a highly dynamic community of researchers with the common aim to understand how chromatin organization controls gene expression, development, and plant responses to the environment. New evidence showing how epigenetic states are set, perpetuated, and inherited were presented, and novel data related to the three-dimensional organization of chromatin within the nucleus were discussed. At the level of the nucleosome, its composition by different histone variants and their specialized histone deposition complexes were addressed as well as the mechanisms involved in histone post-translational modifications and their role in gene expression. The keynote lecture on plant DNA methylation by Julie Law (SALK Institute) and the tribute session to Lars Hennig, honoring the memory of one of the founders of the EWPC who contributed to promote the plant chromatin and epigenetic field in Europe, added a very special note to this gathering. In this perspective article we summarize some of the most outstanding data and advances on plant chromatin research presented at this workshop.
KW  - EWPC2019
KW  - chromatin
KW  - epigenetics
KW  - transcription
KW  - nucleus
Y1  - 2020
U6  - https://doi.org/10.3389/fpls.2019.01795
SN  - 1664-462X
VL  - 10
IS  - 1795
SP  - 1
EP  - 12
PB  - Frontiers Media
CY  - Lausanne
ER  - 
TY  - GEN
A1  - Moreno-Romero, Jordi
A1  - Probst, Aline V.
A1  - Trindade, Inês
A1  - Kalyanikrishna, 
A1  - Engelhorn, Julia
A1  - Farrona, Sara
T1  - Looking At the Past and Heading to the Future
BT  - Meeting Summary of the 6th European Workshop on Plant Chromatin 2019 in Cologne, Germany
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - In June 2019, more than a hundred plant researchers met in Cologne, Germany, for the 6th European Workshop on Plant Chromatin (EWPC). This conference brought together a highly dynamic community of researchers with the common aim to understand how chromatin organization controls gene expression, development, and plant responses to the environment. New evidence showing how epigenetic states are set, perpetuated, and inherited were presented, and novel data related to the three-dimensional organization of chromatin within the nucleus were discussed. At the level of the nucleosome, its composition by different histone variants and their specialized histone deposition complexes were addressed as well as the mechanisms involved in histone post-translational modifications and their role in gene expression. The keynote lecture on plant DNA methylation by Julie Law (SALK Institute) and the tribute session to Lars Hennig, honoring the memory of one of the founders of the EWPC who contributed to promote the plant chromatin and epigenetic field in Europe, added a very special note to this gathering. In this perspective article we summarize some of the most outstanding data and advances on plant chromatin research presented at this workshop.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1423 
KW  - EWPC2019
KW  - chromatin
KW  - epigenetics
KW  - transcription
KW  - nucleus
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-511942
SN  - 1866-8372
ER  - 
TY  - GEN
A1  - Cao, Xianyong
A1  - Tian, Fang
A1  - Andreev, Andrei
A1  - Anderson, Patricia M.
A1  - Lozhkin, Anatoly V.
A1  - Bezrukova, Elena
A1  - Ni, Jian
A1  - Rudaya, Natalia
A1  - Stobbe, Astrid
A1  - Wieczorek, Mareike
A1  - Herzschuh, Ulrike
T1  - A taxonomically harmonized and temporally standardized fossil pollen dataset from Siberia covering the last 40 kyr
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Pollen records from Siberia are mostly absent in global or Northern Hemisphere synthesis works. Here we present a taxonomically harmonized and temporally standardized pollen dataset that was synthesized using 173 palynological records from Siberia and adjacent areas (northeastern Asia, 42-75 degrees N, 50-180 degrees E). Pollen data were taxonomically harmonized, i.e. the original 437 taxa were assigned to 106 combined pollen taxa. Age-depth models for all records were revised by applying a constant Bayesian age-depth modelling routine. The pollen dataset is available as count data and percentage data in a table format (taxa vs. samples), with age information for each sample. The dataset has relatively few sites covering the last glacial period between 40 and 11.5 ka (calibrated thousands of years before 1950 CE) particularly from the central and western part of the study area. In the Holocene period, the dataset has many sites from most of the area, with the exception of the central part of Siberia. Of the 173 pollen records, 81 % of pollen counts were downloaded from open databases (GPD, EPD, PANGAEA) and 10 % were contributions by the original data gatherers, while a few were digitized from publications. Most of the pollen records originate from peatlands (48 %) and lake sediments (33 %). Most of the records (83 %) have >= 3 dates, allowing the establishment of reliable chronologies. The dataset can be used for various purposes, including pollen data mapping (example maps for Larix at selected time slices are shown) as well as quantitative climate and vegetation reconstructions. The datasets for pollen counts and pollen percentages are available at https://doi.org/10.1594/PANGAEA.898616 (Cao et al., 2019a), also including the site information, data source, original publication, dating data, and the plant functional type for each pollen taxa.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1427 
KW  - Late Quaternary vegetation
KW  - Holocene environmental history
KW  - eastern continental Asia
KW  - plant macrofossil data
KW  - late pleistocene
KW  - paleoenvironmental records
KW  - Verkhoyansk mountains
KW  - climate dynamics
KW  - glacial maximum
KW  - Northern Asia
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-512438
SN  - 1866-8372
IS  - 1
ER  - 
TY  - JOUR
A1  - Cao, Xianyong
A1  - Tian, Fang
A1  - Andreev, Andrei
A1  - Anderson, Patricia M.
A1  - Lozhkin, Anatoly V.
A1  - Bezrukova, Elena
A1  - Ni, Jian
A1  - Rudaya, Natalia
A1  - Stobbe, Astrid
A1  - Wieczorek, Mareike
A1  - Herzschuh, Ulrike
T1  - A taxonomically harmonized and temporally standardized fossil pollen dataset from Siberia covering the last 40 kyr
JF  - Earth System Science Data
N2  - Pollen records from Siberia are mostly absent in global or Northern Hemisphere synthesis works. Here we present a taxonomically harmonized and temporally standardized pollen dataset that was synthesized using 173 palynological records from Siberia and adjacent areas (northeastern Asia, 42-75 degrees N, 50-180 degrees E). Pollen data were taxonomically harmonized, i.e. the original 437 taxa were assigned to 106 combined pollen taxa. Age-depth models for all records were revised by applying a constant Bayesian age-depth modelling routine. The pollen dataset is available as count data and percentage data in a table format (taxa vs. samples), with age information for each sample. The dataset has relatively few sites covering the last glacial period between 40 and 11.5 ka (calibrated thousands of years before 1950 CE) particularly from the central and western part of the study area. In the Holocene period, the dataset has many sites from most of the area, with the exception of the central part of Siberia. Of the 173 pollen records, 81 % of pollen counts were downloaded from open databases (GPD, EPD, PANGAEA) and 10 % were contributions by the original data gatherers, while a few were digitized from publications. Most of the pollen records originate from peatlands (48 %) and lake sediments (33 %). Most of the records (83 %) have >= 3 dates, allowing the establishment of reliable chronologies. The dataset can be used for various purposes, including pollen data mapping (example maps for Larix at selected time slices are shown) as well as quantitative climate and vegetation reconstructions. The datasets for pollen counts and pollen percentages are available at https://doi.org/10.1594/PANGAEA.898616 (Cao et al., 2019a), also including the site information, data source, original publication, dating data, and the plant functional type for each pollen taxa.
KW  - Late Quaternary vegetation
KW  - Holocene environmental history
KW  - eastern continental Asia
KW  - plant macrofossil data
KW  - late pleistocene
KW  - paleoenvironmental records
KW  - Verkhoyansk mountains
KW  - climate dynamics
KW  - glacial maximum
KW  - Northern Asia
Y1  - 2020
U6  - https://doi.org/10.5194/essd-12-119-2020
SN  - 1866-3508
SN  - 1866-3516
VL  - 12
IS  - 1
SP  - 119
EP  - 135
PB  - Copernics Publications
CY  - Katlenburg-Lindau
ER  - 
TY  - JOUR
A1  - Kaech, Heidi
A1  - Dennis, Alice B.
A1  - Vorburger, Christoph
T1  - Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa
JF  - BMC genomics
N2  - Background
Secondary endosymbionts of aphids provide benefits to their hosts, but also impose costs such as reduced lifespan and reproductive output. The aphid Aphis fabae is host to different strains of the secondary endosymbiont Hamiltonella defensa, which encode different putative toxins. These strains have very different phenotypes: They reach different densities in the host, and the costs and benefits (protection against parasitoid wasps) they confer to the host vary strongly.

Results
We used RNA-Seq to generate hypotheses on why four of these strains inflict such different costs to A. fabae. We found different H. defensa strains to cause strain-specific changes in aphid gene expression, but little effect of H. defensa on gene expression of the primary endosymbiont, Buchnera aphidicola. The highly costly and over-replicating H. defensa strain H85 was associated with strongly reduced aphid expression of hemocytin, a marker of hemocytes in Drosophila. The closely related strain H15 was associated with downregulation of ubiquitin-related modifier 1, which is related to nutrient-sensing and oxidative stress in other organisms. Strain H402 was associated with strong differential regulation of a set of hypothetical proteins, the majority of which were only differentially regulated in presence of H402.

Conclusions
Overall, our results suggest that costs of different strains of H. defensa are likely caused by different mechanisms, and that these costs are imposed by interacting with the host rather than the host's obligatory endosymbiont B. aphidicola.
KW  - Aphis fabae
KW  - Buchnera
KW  - Cost of resistance
KW  - Hamiltonella
KW  - Host-symbiont interaction
KW  - RNA-Seq
KW  - Symbiosis
Y1  - 2021
U6  - https://doi.org/10.1186/s12864-021-07742-8
SN  - 1471-2164
VL  - 22
IS  - 1
PB  - BioMed Central
CY  - London
ER  - 
TY  - GEN
A1  - Weyrich, Alexandra
A1  - Yasar, Selma
A1  - Lenz, Dorina
A1  - Fickel, Jörns
T1  - Tissue-specific epigenetic inheritance after paternal heat exposure in male wild guinea pigs
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - External temperature change has been shown to modify epigenetic patterns, such as DNA methylation, which regulates gene expression. DNA methylation is heritable, and as such provides a mechanism to convey environmental information to subsequent generations. Studies on epigenetic response to temperature increase are still scarce in wild mammals, even more so studies that compare tissue-specific epigenetic responses. Here, we aim to address differential epigenetic responses on a gene and gene pathway level in two organs, liver and testis. We chose these organs, because the liver is the main metabolic and thermoregulation organ, and epigenetic modifications in testis are potentially transmitted to the F2 generation. We focused on the transmission of DNA methylation changes to naive male offspring after paternal exposure to an ambient temperature increase of 10 degrees C, and investigated differential methylated regions of sons sired before and after the paternal exposure using Reduced Representation Bisulfite Sequencing. We detected both a highly tissue-specific epigenetic response, reflected in genes involved in organ-specific metabolic pathways, and a more general regulation of single genes epigenetically modified in both organs. We conclude that genomes are context-specifically differentially epigenetically regulated in response to temperature increase. These findings emphasize the epigenetic relevance in cell differentiation, which is essential for the specific function(s) of complex organs, and is represented in a diverse molecular regulation of genes and gene pathways. The results also emphasize the paternal contribution to adaptive processes.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1431 
KW  - DNA methylation
KW  - gene-expression
KW  - CPG Islands
KW  - stress
KW  - hyperthermia
KW  - testis
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-516525
SN  - 1866-8372
IS  - 5-6
ER  - 
TY  - GEN
A1  - Fichtner, Franziska
A1  - Olas, Justyna Jadwiga
A1  - Feil, Regina
A1  - Watanabe, Mutsumi
A1  - Krause, Ursula
A1  - Hoefgen, Rainer
A1  - Stitt, Mark
A1  - Lunn, John Edward
T1  - Functional features of Trehalose-6-Phosphate Synthase 1
BT  - an essential enzyme in Arabidopsis
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Tre6P synthesis by TPS1 is essential for embryogenesis and postembryonic growth in Arabidopsis, and appropriate Suc signaling by Tre6P is dependent on the noncatalytic domains of TPS1. In Arabidopsis (Arabidopsis thaliana), TREHALOSE-6-PHOSPHATE SYNTHASE1 (TPS1) catalyzes the synthesis of the sucrose-signaling metabolite trehalose 6-phosphate (Tre6P) and is essential for embryogenesis and normal postembryonic growth and development. To understand its molecular functions, we transformed the embryo-lethal tps1-1 null mutant with various forms of TPS1 and with a heterologous TPS (OtsA) from Escherichia coli, under the control of the TPS1 promoter, and tested for complementation. TPS1 protein localized predominantly in the phloem-loading zone and guard cells in leaves, root vasculature, and shoot apical meristem, implicating it in both local and systemic signaling of Suc status. The protein is targeted mainly to the nucleus. Restoring Tre6P synthesis was both necessary and sufficient to rescue the tps1-1 mutant through embryogenesis. However, postembryonic growth and the sucrose-Tre6P relationship were disrupted in some complementation lines. A point mutation (A119W) in the catalytic domain or truncating the C-terminal domain of TPS1 severely compromised growth. Despite having high Tre6P levels, these plants never flowered, possibly because Tre6P signaling was disrupted by two unidentified disaccharide-monophosphates that appeared in these plants. The noncatalytic domains of TPS1 ensure its targeting to the correct subcellular compartment and its catalytic fidelity and are required for appropriate signaling of Suc status by Tre6P.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1432 
KW  - cyanobacterial sucrose-phosphatase
KW  - trehalose 6-phosphate
KW  - vegetative growth
KW  - crystal-structure
KW  - gene-expression
KW  - thaliana
KW  - metabolism
KW  - phosphorylation
KW  - reveals
KW  - proteins
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-516532
SN  - 1866-8372
IS  - 6
ER  - 
TY  - JOUR
A1  - Fichtner, Franziska
A1  - Olas, Justyna Jadwiga
A1  - Feil, Regina
A1  - Watanabe, Mutsumi
A1  - Krause, Ursula
A1  - Hoefgen, Rainer
A1  - Stitt, Mark
A1  - Lunn, John Edward
T1  - Functional features of Trehalose-6-Phosphate Synthase 1
BT  - an essential enzyme in Arabidopsis
JF  - The Plant Cell
N2  - Tre6P synthesis by TPS1 is essential for embryogenesis and postembryonic growth in Arabidopsis, and appropriate Suc signaling by Tre6P is dependent on the noncatalytic domains of TPS1. In Arabidopsis (Arabidopsis thaliana), TREHALOSE-6-PHOSPHATE SYNTHASE1 (TPS1) catalyzes the synthesis of the sucrose-signaling metabolite trehalose 6-phosphate (Tre6P) and is essential for embryogenesis and normal postembryonic growth and development. To understand its molecular functions, we transformed the embryo-lethal tps1-1 null mutant with various forms of TPS1 and with a heterologous TPS (OtsA) from Escherichia coli, under the control of the TPS1 promoter, and tested for complementation. TPS1 protein localized predominantly in the phloem-loading zone and guard cells in leaves, root vasculature, and shoot apical meristem, implicating it in both local and systemic signaling of Suc status. The protein is targeted mainly to the nucleus. Restoring Tre6P synthesis was both necessary and sufficient to rescue the tps1-1 mutant through embryogenesis. However, postembryonic growth and the sucrose-Tre6P relationship were disrupted in some complementation lines. A point mutation (A119W) in the catalytic domain or truncating the C-terminal domain of TPS1 severely compromised growth. Despite having high Tre6P levels, these plants never flowered, possibly because Tre6P signaling was disrupted by two unidentified disaccharide-monophosphates that appeared in these plants. The noncatalytic domains of TPS1 ensure its targeting to the correct subcellular compartment and its catalytic fidelity and are required for appropriate signaling of Suc status by Tre6P.
KW  - cyanobacterial sucrose-phosphatase
KW  - trehalose 6-phosphate
KW  - vegetative growth
KW  - crystal-structure
KW  - gene-expression
KW  - thaliana
KW  - metabolism
KW  - phosphorylation
KW  - reveals
KW  - proteins
Y1  - 2020
U6  - https://doi.org/10.1105/tpc.19.00837
SN  - 0032-0781
SN  - 1471-9053
VL  - 32
IS  - 6
SP  - 1949
EP  - 1972
PB  - Oxford University Press
CY  - Oxford
ER  - 
TY  - GEN
A1  - Leimkühler, Silke
T1  - The biosynthesis of the molybdenum cofactors in Escherichia coli
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - The biosynthesis of the molybdenum cofactor (Moco) is highly conserved among all kingdoms of life. In all molybdoenzymes containing Moco, the molybdenum atom is coordinated to a dithiolene group present in the pterin-based 6-alkyl side chain of molybdopterin (MPT). In general, the biosynthesis of Moco can be divided into four steps in in bacteria: (i) the starting point is the formation of the cyclic pyranopterin monophosphate (cPMP) from 5 '-GTP, (ii) in the second step the two sulfur atoms are inserted into cPMP leading to the formation of MPT, (iii) in the third step the molybdenum atom is inserted into MPT to form Moco and (iv) in the fourth step bis-Mo-MPT is formed and an additional modification of Moco is possible with the attachment of a nucleotide (CMP or GMP) to the phosphate group of MPT, forming the dinucleotide variants of Moco. This review presents an update on the well-characterized Moco biosynthesis in the model organism Escherichia coli including novel discoveries from the recent years.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1433 
KW  - periplasmic nitrate reductase
KW  - biotin sulfoxide reductase
KW  - in-vitro-synthesis
KW  - n-oxide reductase
KW  - crystal-structure
KW  - molybdopterin synthase
KW  - formate dehydrogenase
KW  - rhodobacter-capsulatus
KW  - xanthine dehydrogenase
KW  - converting factor
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-516559
SN  - 1866-8372
IS  - 6
ER  - 
TY  - JOUR
A1  - Weise, Hanna
A1  - Auge, Harald
A1  - Baessler, Cornelia
A1  - Bärlund, Ilona
A1  - Bennett, Elena M.
A1  - Berger, Uta
A1  - Bohn, Friedrich
A1  - Bonn, Aletta
A1  - Borchardt, Dietrich
A1  - Brand, Fridolin
A1  - Jeltsch, Florian
A1  - Joshi, Jasmin Radha
A1  - Grimm, Volker
T1  - Resilience trinity
BT  - safeguarding ecosystem functioning and services across three different time horizons and decision contexts
JF  - Oikos
N2  - Ensuring ecosystem resilience is an intuitive approach to safeguard the functioning of ecosystems and hence the future provisioning of ecosystem services (ES). However, resilience is a multi-faceted concept that is difficult to operationalize. Focusing on resilience mechanisms, such as diversity, network architectures or adaptive capacity, has recently been suggested as means to operationalize resilience. Still, the focus on mechanisms is not specific enough. We suggest a conceptual framework, resilience trinity, to facilitate management based on resilience mechanisms in three distinctive decision contexts and time-horizons: 1) reactive, when there is an imminent threat to ES resilience and a high pressure to act, 2) adjustive, when the threat is known in general but there is still time to adapt management and 3) provident, when time horizons are very long and the nature of the threats is uncertain, leading to a low willingness to act. Resilience has different interpretations and implications at these different time horizons, which also prevail in different disciplines. Social ecology, ecology and engineering are often implicitly focussing on provident, adjustive or reactive resilience, respectively, but these different notions of resilience and their corresponding social, ecological and economic tradeoffs need to be reconciled. Otherwise, we keep risking unintended consequences of reactive actions, or shying away from provident action because of uncertainties that cannot be reduced. The suggested trinity of time horizons and their decision contexts could help ensuring that longer-term management actions are not missed while urgent threats to ES are given priority.
KW  - concepts
KW  - ecosystems
KW  - ecosystem services provisioning
KW  - management
KW  - resilience
Y1  - 2020
U6  - https://doi.org/10.1111/oik.07213
SN  - 0030-1299
SN  - 1600-0706
VL  - 129
IS  - 4
SP  - 445
EP  - 456
PB  - Wiley-Blackwell
CY  - Oxford
ER  - 
TY  - GEN
A1  - Weise, Hanna
A1  - Auge, Harald
A1  - Baessler, Cornelia
A1  - Bärlund, Ilona
A1  - Bennett, Elena M.
A1  - Berger, Uta
A1  - Bohn, Friedrich
A1  - Bonn, Aletta
A1  - Borchardt, Dietrich
A1  - Brand, Fridolin
A1  - Jeltsch, Florian
A1  - Joshi, Jasmin Radha
A1  - Grimm, Volker
T1  - Resilience trinity
BT  - Safeguarding ecosystem functioning and services across three different time horizons and decision contexts
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Ensuring ecosystem resilience is an intuitive approach to safeguard the functioning of ecosystems and hence the future provisioning of ecosystem services (ES). However, resilience is a multi-faceted concept that is difficult to operationalize. Focusing on resilience mechanisms, such as diversity, network architectures or adaptive capacity, has recently been suggested as means to operationalize resilience. Still, the focus on mechanisms is not specific enough. We suggest a conceptual framework, resilience trinity, to facilitate management based on resilience mechanisms in three distinctive decision contexts and time-horizons: 1) reactive, when there is an imminent threat to ES resilience and a high pressure to act, 2) adjustive, when the threat is known in general but there is still time to adapt management and 3) provident, when time horizons are very long and the nature of the threats is uncertain, leading to a low willingness to act. Resilience has different interpretations and implications at these different time horizons, which also prevail in different disciplines. Social ecology, ecology and engineering are often implicitly focussing on provident, adjustive or reactive resilience, respectively, but these different notions of resilience and their corresponding social, ecological and economic tradeoffs need to be reconciled. Otherwise, we keep risking unintended consequences of reactive actions, or shying away from provident action because of uncertainties that cannot be reduced. The suggested trinity of time horizons and their decision contexts could help ensuring that longer-term management actions are not missed while urgent threats to ES are given priority.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1444 
KW  - concepts
KW  - ecosystems
KW  - ecosystem services provisioning
KW  - management
KW  - resilience
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-515284
SN  - 1866-8372
IS  - 4
ER  - 
TY  - JOUR
A1  - Korniienko, Yevheniia
A1  - Nguyen, Linh
A1  - Baumgartner, Stephanie
A1  - Vater, Marianne
A1  - Tiedemann, Ralph
A1  - Kirschbaum, Frank
T1  - Correction to: Intragenus F1-hybrids of African weakly electric fish (Mormyridae: Campylomormyrus tamandua male x C. compressirostris female) are fertile (vol 206, pg 571, 2020)
JF  - Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology
Y1  - 2021
U6  - https://doi.org/10.1007/s00359-021-01513-2
SN  - 0340-7594
SN  - 1432-1351
VL  - 207
IS  - 6
SP  - 773
EP  - 773
PB  - Springer
CY  - Heidelberg
ER  - 
TY  - JOUR
A1  - Omranian, Sara
A1  - Nikoloski, Zoran
A1  - Grimm, Dominik G.
T1  - Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward
BT  - present state, challenges, and the way forward
JF  - Computational and structural biotechnology journal
N2  - Physically interacting proteins form macromolecule complexes that drive diverse cellular processes. Advances in experimental techniques that capture interactions between proteins provide us with protein-protein interaction (PPI) networks from several model organisms. These datasets have enabled the prediction and other computational analyses of protein complexes. Here we provide a systematic review of the state-of-the-art algorithms for protein complex prediction from PPI networks proposed in the past two decades. The existing approaches that solve this problem are categorized into three groups, including: cluster-quality-based, node affinity-based, and network embedding-based approaches, and we compare and contrast the advantages and disadvantages. We further include a comparative analysis by computing the performance of eighteen methods based on twelve well-established performance measures on four widely used benchmark protein-protein interaction networks. Finally, the limitations and drawbacks of both, current data and approaches, along with the potential solutions in this field are discussed, with emphasis on the points that pave the way for future research efforts in this field. (c) 2022 The Author(s). Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. This is an open access article under the CC BY license (http://creativecommons. org/licenses/by/4.0/).
KW  - Protein Complex Prediction
KW  - Protein-Protein interaction network
KW  - Network
KW  - Clustering Algorithms
KW  - Network embedding
Y1  - 2022
U6  - https://doi.org/10.1016/j.csbj.2022.05.049
SN  - 2001-0370
VL  - 20
SP  - 2699
EP  - 2712
PB  - Research Network of Computational and Structural Biotechnology (RNCSB)
CY  - Gotenburg
ER  - 
TY  - JOUR
A1  - Haueis, Lisa
A1  - Stech, Marlitt
A1  - Kubick, Stefan
T1  - A Cell-free Expression Pipeline for the Generation and Functional Characterization of Nanobodies
JF  - Frontiers in Bioengineering and Biotechnology
N2  - Cell-free systems are well-established platforms for the rapid synthesis, screening, engineering and modification of all kinds of recombinant proteins ranging from membrane proteins to soluble proteins, enzymes and even toxins. Also within the antibody field the cell-free technology has gained considerable attention with respect to the clinical research pipeline including antibody discovery and production. Besides the classical full-length monoclonal antibodies (mAbs), so-called "nanobodies" (Nbs) have come into focus. A Nb is the smallest naturally-derived functional antibody fragment known and represents the variable domain (VHH, similar to 15 kDa) of a camelid heavy-chain-only antibody (HCAb). Based on their nanoscale and their special structure, Nbs display striking advantages concerning their production, but also their characteristics as binders, such as high stability, diversity, improved tissue penetration and reaching of cavity-like epitopes. The classical way to produce Nbs depends on the use of living cells as production host. Though cell-based production is well-established, it is still time-consuming, laborious and hardly amenable for high-throughput applications. Here, we present for the first time to our knowledge the synthesis of functional Nbs in a standardized mammalian cell-free system based on Chinese hamster ovary (CHO) cell lysates. Cell-free reactions were shown to be time-efficient and easy-to-handle allowing for the "on demand" synthesis of Nbs. Taken together, we complement available methods and demonstrate a promising new system for Nb selection and validation.
KW  - cell-free protein synthesis
KW  - In vitro transcription
KW  - translation
KW  - nanobody
KW  - VHH
KW  - camelid
KW  - CHO cell lysate
Y1  - 2022
U6  - https://doi.org/10.3389/fbioe.2022.896763
SN  - 2296-4185
VL  - 10
PB  - Frontiers Media
CY  - Lausanne
ER  - 
TY  - JOUR
A1  - Olas, Justyna Jadwiga
A1  - Apelt, Federico
A1  - Watanabe, Mutsumi
A1  - Höfgen, Rainer
A1  - Wahl, Vanessa
T1  - Developmental stage-specific metabolite signatures in Arabidopsis thaliana under optimal and mild nitrogen limitation
JF  - Plant science : an international journal of experimental plant biology
N2  - Metabolites influence flowering time, and thus are among the major determinants of yield. Despite the reported role of trehalose 6-phosphate and nitrate signaling on the transition from the vegetative to the reproductive phase, little is known about other metabolites contributing and responding to developmental phase changes. To increase our understanding which metabolic traits change throughout development in Arabidopsis thaliana and to identify metabolic markers for the vegetative and reproductive phases, especially among individual amino acids (AA), we profiled metabolites of plants grown in optimal (ON) and limited nitrogen (N) (LN) conditions, the latter providing a mild but consistent limitation of N. We found that although LN plants adapt their growth to a decreased level of N, their metabolite profiles are strongly distinct from ON plant profiles, with N as the driving factor for the observed differences. We demonstrate that the vegetative and the reproductive phase are not only marked by growth parameters such as biomass and rosette area, but also by specific metabolite signatures including specific single AA. In summary, we identified N-dependent and -independent indicators manifesting developmental stages, indicating that the plant's metabolic status also reports on the developmental phases.
KW  - Amino acids
KW  - Floral induction
KW  - Flowering time
KW  - Nitrogen
KW  - Metabolites
KW  - Vegetative phase
KW  - Reproductive phase
Y1  - 2021
U6  - https://doi.org/10.1016/j.plantsci.2020.110746
SN  - 0168-9452
SN  - 1873-2259
VL  - 303
PB  - Elsevier Science
CY  - Amsterdam [u.a.]
ER  - 
TY  - GEN
A1  - Kunstmann, Ruth Sonja
A1  - Engström, Olof
A1  - Wehle, Marko
A1  - Widmalm, Göran
A1  - Santer, Mark
A1  - Barbirz, Stefanie
T1  - Increasing the affinity of an O-Antigen polysaccharide binding site in Shigella flexneri bacteriophage Sf6 tailspike protein
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - Broad and unspecific use of antibiotics accelerates spread of resistances. Sensitive and robust pathogen detection is thus important for a more targeted application. Bacteriophages contain a large repertoire of pathogen-binding proteins. These tailspike proteins (TSP) often bind surface glycans and represent a promising design platform for specific pathogen sensors. We analysed bacteriophage Sf6 TSP that recognizes the O-polysaccharide of dysentery-causing Shigella flexneri to develop variants with increased sensitivity for sensor applications. Ligand polyrhamnose backbone conformations were obtained from 2D H-1,H-1-trNOESY NMR utilizing methine-methine and methine-methyl correlations. They agreed well with conformations obtained from molecular dynamics (MD), validating the method for further predictions. In a set of mutants, MD predicted ligand flexibilities that were in good correlation with binding strength as confirmed on immobilized S. flexneri O-polysaccharide (PS) with surface plasmon resonance. In silico approaches combined with rapid screening on PS surfaces hence provide valuable strategies for TSP-based pathogen sensor design.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1417 
KW  - carbohydrates
KW  - molecular dynamics simulations
KW  - NMR spectroscopy
KW  - protein-carbohydrate interactions
KW  - surface plasmon resonance
Y1  - 2020
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-519418
SN  - 1866-8372
IS  - 32
ER  - 
TY  - THES
A1  - You, Lili
T1  - Chloroplast engineering for recombinant protein production and stress protection
Y1  - 2024
ER  - 
TY  - THES
A1  - Székely, András Csaba
T1  - Long-distance circadian coordination via a phloem-delivered mobile transcript
Y1  - 2024
ER  - 
TY  - JOUR
A1  - Wendt, Martin
A1  - Senftleben, Nele
A1  - Gros, Patrick
A1  - Schmitt, Thomas
T1  - Coping with environmental extremes
BT  - population ecology and behavioural adaptation of Erebia pronoe, an Alpine butterfly species
JF  - Insects : open access journal
N2  - Simple Summary:& nbsp;High alpine meadows are home to numerous endemic butterfly species. A combination of climate change and changes in agricultural practices has led to a severe decline in many species. A seemingly unaffected representative of this habitat is Erebia pronoe. We studied the behaviour, resource use and population structure of this species to explain its resilience and estimate its future survival potential. This species shows pronounced protandry in combination with serial eclosion. Males were significantly more active and mobile and were also caught significantly more often than females, resulting in a pronounced shift in sex ratio in the predicted population structure. The adults use a wide range of nectar plants and establish homeranges in areas of high habitat quality. Thus, Erebia pronoe adults use a wide array of resources combined with a slight specialisation to avoid niche overlap with closely related species. The resulting ecological flexibility seems to be an adaptation to unpredictable environmental conditions, which should be the result of a long-lasting adaptation process. Moreover, the combination of opportunism and modest specialisation should also be a good basis for coping with future changes caused by climate and land-use change.</p> <br /> <br></p> <br /> A mark-recapture study of the nominotypical Erebia pronoe in the Alps was conducted to survey its ecological demands and characteristics. Population structure analysis revealed a combination of protandry (one-week earlier eclosion of males) and serial eclosion. Significant differences between both sexes were found in population density (males: 580/ha & PLUSMN; 37 SE; females: 241/ha & PLUSMN; 66 SE), sex-ratio (2.4) and behaviour (57.7 vs. 11.9% flying). Both sexes used a wide range of nectar plants (Asteraceae, 77.3%; Dipsacaceae, 12.3%; Gentianaceae, 9.7%). The use of nectar plants shows a non-specific spectrum, which, however, completely avoids overlap with the locally co-occurring species Erebia nivalis. Movement patterns show the establishment of homeranges, which significantly limits the migration potential. Due to its broad ecological niche, E. pronoe will probably be able to react plastically to the consequences of climate change. The formation of high population densities, the unconcerned endangerment status, the unspecific resource spectrum and the sedentary character of the species make E. pronoe a potential indicator of the quality and general resource occurrence of alpine rupicolous grasslands.
KW  - mark-release-recapture
KW  - movement patterns
KW  - opportunistic behaviour
KW  - partial protandry
KW  - population demography
Y1  - 2021
U6  - https://doi.org/10.3390/insects12100896
SN  - 2075-4450
VL  - 12
IS  - 10
PB  - MDPI
CY  - Basel
ER  - 
TY  - JOUR
A1  - Angeleska, Angela
A1  - Omranian, Sara
A1  - Nikoloski, Zoran
T1  - Coherent network partitions
BT  - Characterizations with cographs and prime graphs
JF  - Theoretical computer science : the journal of the EATCS
N2  - We continue to study coherent partitions of graphs whereby the vertex set is partitioned into subsets that induce biclique spanned subgraphs. The problem of identifying the minimum number of edges to obtain biclique spanned connected components (CNP), called the coherence number, is NP-hard even on bipartite graphs. Here, we propose a graph transformation geared towards obtaining an O (log n)-approximation algorithm for the CNP on a bipartite graph with n vertices. The transformation is inspired by a new characterization of biclique spanned subgraphs. In addition, we study coherent partitions on prime graphs, and show that finding coherent partitions reduces to the problem of finding coherent partitions in a prime graph. Therefore, these results provide future directions for approximation algorithms for the coherence number of a given graph.
KW  - Graph partitions
KW  - Network clustering
KW  - Cographs
KW  - Coherent partition
KW  - Prime graphs
Y1  - 2021
U6  - https://doi.org/10.1016/j.tcs.2021.10.002
SN  - 0304-3975
VL  - 894
SP  - 3
EP  - 11
PB  - Elsevier
CY  - Amsterdam [u.a.]
ER  - 
TY  - JOUR
A1  - Andersson, Matilda L.
A1  - Scharnweber, Inga Kristin
A1  - Eklöv, Peter
T1  - The interaction between metabolic rate, habitat choice, and resource use in a polymorphic freshwater species
JF  - Ecology and evolution
N2  - Resource polymorphism is common across taxa and can result in alternate ecotypes with specific morphologies, feeding modes, and behaviors that increase performance in a specific habitat. This can result in high intraspecific variation in the expression of specific traits and the extent to which these traits are correlated within a single population. Although metabolic rate influences resource acquisition and the overall pace of life of individuals it is not clear how metabolic rate interacts with the larger suite of traits to ultimately determine individual fitness. We examined the relationship between metabolic rates and the major differences (habitat use, morphology, and resource use) between littoral and pelagic ecotypes of European perch (Perca fluviatilis) from a single lake in Central Sweden. Standard metabolic rate (SMR) was significantly higher in pelagic perch but did not correlate with resource use or morphology. Maximum metabolic rate (MMR) was not correlated with any of our explanatory variables or with SMR. Aerobic scope (AS) showed the same pattern as SMR, differing across habitats, but contrary to expectations, was lower in pelagic perch. This study helps to establish a framework for future experiments further exploring the drivers of intraspecific differences in metabolism. In addition, since metabolic rates scale with temperature and determine predator energy requirements, our observed differences in SMR across habitats will help determine ecotype-specific vulnerabilities to climate change and differences in top-down predation pressure across habitats.
KW  - intraspecific variation
KW  - metabolic rate
KW  - morphometrics
KW  - Perca
KW  - fluviatilis
KW  - plasticity
KW  - resource use
KW  - respirometry
KW  - stable isotopes
Y1  - 2022
U6  - https://doi.org/10.1002/ece3.9129
SN  - 2045-7758
VL  - 12
IS  - 8
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - JOUR
A1  - Yan, Jiawei
A1  - Frøkjær, Emil Egede
A1  - Engelbrekt, Christian
A1  - Leimkühler, Silke
A1  - Ulstrup, Jens
A1  - Wollenberger, Ulla
A1  - Xiao, Xinxin
A1  - Zhang, Jingdong
T1  - Voltammetry and single-molecule in situ scanning tunnelling microscopy of the redox metalloenzyme human sulfite oxidase
JF  - ChemElectroChem
N2  - Human sulfite oxidase (hSO) is a homodimeric two-domain enzyme central in the biological sulfur cycle. A pyranopterin molybdenum cofactor (Moco) is the catalytic site and a heme b(5) group located in the N-terminal domain. The two domains are connected by a flexible linker region. Electrons produced at the Moco in sulfite oxidation, are relayed via heme b(5) to electron acceptors or an electrode surface. Inter-domain conformational changes between an open and a closed enzyme conformation, allowing "gated" electron transfer has been suggested. We first recorded cyclic voltammetry (CV) of hSO on single-crystal Au(111)-electrode surfaces modified by self-assembled monolayers (SAMs) both of a short rigid thiol, cysteamine and of a longer structurally flexible thiol, omega-amino-octanethiol (AOT). hSO on cysteamine SAMs displays a well-defined pair of voltammetric peaks around -0.207 V vs. SCE in the absence of sulfite substrate, but no electrocatalysis. hSO on AOT SAMs displays well-defined electrocatalysis, but only "fair" quality voltammetry in the absence of sulfite. We recorded next in situ scanning tunnelling spectroscopy (STS) of hSO on AOT modified Au(111)-electrodes, disclosing, a 2-5 % surface coverage of strong molecular scale contrasts, assigned to single hSO molecules, notably with no contrast difference in the absence and presence of sulfite. In situ STS corroborated this observation with a sigmoidal tunnelling current/overpotential correlation.
KW  - cyclic voltammetry
KW  - human sulfite oxidase
KW  - in  situ scanning
KW  - tunnelling spectroscopy
KW  - self-assembled molecular monolayers
KW  - single-crystal gold electrodes
Y1  - 2021
U6  - https://doi.org/10.1002/celc.202001258
SN  - 2196-0216
VL  - 8
IS  - 1
SP  - 164
EP  - 171
PB  - Wiley-VCH
CY  - Weinheim
ER  - 
TY  - JOUR
A1  - Tadjoung Waffo, Armel Franklin
A1  - Mitrova, Biljana
A1  - Tiedemann, Kim
A1  - Iobbi-Nivol, Chantal
A1  - Leimkühler, Silke
A1  - Wollenberger, Ulla
T1  - Electrochemical trimethylamine n-oxide biosensor with enzyme-based oxygen-scavenging membrane for long-term operation under ambient air
JF  - Biosensors : open access journal
N2  - An amperometric trimethylamine N-oxide (TMAO) biosensor is reported, where TMAO reductase (TorA) and glucose oxidase (GOD) and catalase (Cat) were immobilized on the electrode surface, enabling measurements of mediated enzymatic TMAO reduction at low potential under ambient air conditions. The oxygen anti-interference membrane composed of GOD, Cat and polyvinyl alcohol (PVA) hydrogel, together with glucose concentration, was optimized until the O-2 reduction current of a Clark-type electrode was completely suppressed for at least 3 h. For the preparation of the TMAO biosensor, Escherichia coli TorA was purified under anaerobic conditions and immobilized on the surface of a carbon electrode and covered by the optimized O-2 scavenging membrane. The TMAO sensor operates at a potential of -0.8 V vs. Ag/AgCl (1 M KCl), where the reduction of methylviologen (MV) is recorded. The sensor signal depends linearly on TMAO concentrations between 2 mu M and 15 mM, with a sensitivity of 2.75 +/- 1.7 mu A/mM. The developed biosensor is characterized by a response time of about 33 s and an operational stability over 3 weeks. Furthermore, measurements of TMAO concentration were performed in 10% human serum, where the lowest detectable concentration is of 10 mu M TMAO.
KW  - trimethylamine N-oxide
KW  - biosensor
KW  - TMAO-reductase
KW  - oxygen scavenger
KW  - immobilized enzyme
KW  - multienzyme electrode
KW  - viologen
Y1  - 2021
U6  - https://doi.org/10.3390/bios11040098
SN  - 2079-6374
VL  - 11
IS  - 4
PB  - MDPI
CY  - Basel
ER  - 
TY  - JOUR
A1  - Scheffler, Christiane
A1  - Hermanussen, Michael
T1  - Reply to the letter titled:  "Pathologizing normal height or identifying chronic malnutrition: Public health concerns of calling stunting normal" / by Nafis Faizi,  Mohd Yasir Zubair and Fazeelah Tasleem'. -  New York, NY [u.a.] : Wiley Interscience. - 2022. - (American Journal of Human Biology : the Official Journal of the Human Biology Council, 16 Feb 2022. - 34(2022) 5 ). - https://doi.org/10.1002/ajhb.23735
JF  - American journal of human biology : the official journal of the Human Biology Association
Y1  - 2022
U6  - https://doi.org/10.1002/ajhb.23741
SN  - 1520-6300
VL  - 34
IS  - 5
PB  - Wiley Interscience
CY  - New York, NY [u.a.]
ER  - 
TY  - JOUR
A1  - Berg-Mohnicke, Michael
A1  - Nendel, Claas
T1  - A case for object capabilities as the foundation of a distributed environmental model and simulation infrastructure
JF  - Environmental modelling & software with environment data news
N2  - With the advent of increasingly powerful computational architectures, scientists use these possibilities to create simulations of ever-increasing size and complexity. Large-scale simulations of environmental systems require huge amounts of resources. Managing these in an operational way becomes increasingly complex and difficult to handle for individual scientists. State-of-the-art simulation infrastructures usually provide the necessary re-sources in a centralised setup, which often results in an all-or-nothing choice for the user. Here, we outline an alternative approach to handling this complexity, while rendering the use of high-performance hardware and large datasets still possible. It retains a number of desirable properties: (i) a decentralised structure, (ii) easy sharing of resources to promote collaboration and (iii) secure access to everything, including natural delegation of authority across levels and system boundaries. We show that the object capability paradigm will cover these issues, and present the first steps towards developing a simulation infrastructure based on these principles.
KW  - Cap'n proto
KW  - Scientific collaboration
KW  - Co -development
KW  - Communication
KW  - protocol
KW  - Object capability
Y1  - 2022
U6  - https://doi.org/10.1016/j.envsoft.2022.105471
SN  - 1364-8152
SN  - 1873-6726
VL  - 156
PB  - Elsevier
CY  - Oxford
ER  - 
TY  - JOUR
A1  - Çabuk, Uğur
A1  - Ünlü, Ercan Selçuk
T1  - A combined de novo assembly approach increases the quality of prokaryotic draft genomes
JF  - Folia microbiologica : international journal for general, environmental and applied microbiology, and immunology
N2  - Next-generation sequencing methods provide comprehensive data for the analysis of structural and functional analysis of the genome. The draft genomes with low contig number and high N50 value can give insight into the structure of the genome as well as provide information on the annotation of the genome. In this study, we designed a pipeline that can be used to assemble prokaryotic draft genomes with low number of contigs and high N50 value. We aimed to use combination of two de novo assembly tools (SPAdes and IDBA-Hybrid) and evaluate the impact of this approach on the quality metrics of the assemblies. The followed pipeline was tested with the raw sequence data with short reads (< 300) for a total of 10 species from four different genera. To obtain the final draft genomes, we firstly assembled the sequences using SPAdes to find closely related organism using the extracted 16 s rRNA from it. IDBA-Hybrid assembler was used to obtain the second assembly data using the closely related organism genome. SPAdes assembler tool was implemented using the second assembly, produced by IDBA-hybrid as a hint. The results were evaluated using QUAST and BUSCO. The pipeline was successful for the reduction of the contig numbers and increasing the N50 statistical values in the draft genome assemblies while preserving the coverage of the draft genomes.
KW  - De novo assembly
KW  - Prokaryotes
KW  - Bacteria
KW  - NGS
KW  - Short reads
KW  - Draft genome
Y1  - 2022
U6  - https://doi.org/10.1007/s12223-022-00980-7
SN  - 0015-5632
SN  - 1874-9356
VL  - 67
SP  - 801
EP  - 810
PB  - Springer
CY  - Dordrecht
ER  - 
TY  - THES
A1  - Wojciechowska, Izabela
T1  - The journey towards the discovery of new protein-metabolite interactions in Arabidopsis thaliana and further functional characterization of selected binding events
Y1  - 2022
ER  - 
TY  - THES
A1  - Kappel, Sandrine
T1  - Photosynthesis in fluctuating light
BT  - pgr5 suppressor mutant screen : low NPQ mutant identification and characterization
N2  - Light is the essential energy source for plants to drive photosynthesis. In nature, light availability is highly variable and often fluctuates on very short time scales. As a result, plants developed mechanisms to cope with these fluctuations. Understanding how to improve light use efficiency in natural fluctuating light (FL) conditions is a major target for agronomy.

In the first project, we identified an Arabidopsis thaliana plant that showed reduced levels of rapidly inducible non-photochemical quenching (NPQ). This plant was devoid of any T-DNA insertion. Using a mapping-by-sequencing approach, we successfully located the causal genomic region near the end of chromosome 4. Through variant investigations in that region, we identified a deletion of about 20 kb encompassing 9 genes. By complementation analysis, we confirmed that one of the deleted genes, VTC2, is the causal gene responsible for the low NPQ. Loss of VTC2 decreased NPQ particularly in old leaves, with young leaves being only slightly affected. Additionally, ascorbate levels were almost abolished in old leaves, likely causing the NPQ decrease by reducing the activity of the xanthophyll cycle. Although ascorbate levels in younger leaves were reduced compared to wild-type plants, they remained at a comparably higher level. This difference may be due to the VTC2 paralog VTC5, which is expressed at a higher level in young leaves than in old ones.

Plants require the PROTON GRADIENT REGULATION 5 (PGR5) protein for survival in FL. pgr5 mutants die because they fail to increase the luminal proton concentration in response to high light (HL) phases. A rapid elevation in ∆pH is needed to slow down electron transport through the Cytochrome b6 f complex (photosynthetic control). In FL, such lack of control in the pgr5 mutants results in photosystem I (PSI) overreduction, reactive oxygen species (ROS) production, and cell death. Decreases in photosystem II (PSII) activity introduced by crossing pgr5 with PSII deficient mutants
rescued the lethality of pgr5 in FL. PGR5 was suggested to act as part of the ferredoxin-plastoquinone reductase (FQR), involved in cyclic electron transfer around PSI. However, the proposed molecular role of PGR5 remains highly debated. To learn more about PGR5 function, we performed a forward genetic screen in Arabidopsis thaliana to identify EMS-induced suppressor mutants surviving longer when grown in FL compared to pgr5 mutants (referred to as ”suppressor of pgr5 lethality in fluctuating light”, splf ). 11 different candidate genes were identified in a total of 22 splf plants.

Mutants of seven of these genes in the pgr5 background showed low Fv/Fm values when grown in non-fluctuating low light (LL). Five of these 4genes were previously reported to have a role in PSII biogenesis or function. Two others, RPH1 and a DEAD/DEAH box helicase (AT3G02060), have not been linked to PSII function before. Three of splf candidate genes link to primary metabolism, fructose-2,6-bisphosphatase (F2KP ), udp-glucose pyrophosphorylase 1 (UGP1 ) and ferredoxin-dependent glutamate synthase (Fd-GOGAT ). They are characterized by the fact that they survive longer in FL than pgr5 mutants but do not procede beyond the early vegetative
phase and then die.
N2  - Pflanzen wandeln Sonnenlicht durch die Photosynthese in chemische Energie um. In der Natur unterliegt die Verfügbarkeit von Licht jedoch starken Schwankungen, beispielsweise durch kurzzeitige Wolkenverdeckungen. Um mit diesen Veränderungen umzugehen, haben Pflanzen spezielle Mechanismen entwickelt. Das Verständnis, wie die Lichtnutzung unter diesen fluktuierenden Bedingungen optimiert werden kann, stellt eines der Hauptziele in der Landwirtschaft dar. Ziel dieser Arbeit ist es, zu diesem Verständnis beizutragen.

Wir haben eine neue Mutante der Ackerschmalwand identifiziert, die reduzierte Levels des schnell induzierbaren nicht-photochemischen Quenchings (NPQ) aufwies. NPQ ist ein wichtiger Mechanismus, mit dem Pflanzen auf schnelle Wechsel zu stärkerem Licht reagieren können. Die Untersuchung ergab, dass das Fehlen des Gens VTC2 die Ursache für die Reduzierung des NPQ war, mit Auswirkungen auf den Vitamin-C-Spiegel und die Aktivität des Xanthophyllzyklus. Besonders interessant war, dass der Verlust des Gens hauptsächlich ältere Blätter beeinflusste.

Das Gen PGR5 ist für das Überleben von Pflanzen in schwankenden Lichtverhältnissen notwendig. Obwohl viele wissenschaftliche Arbeiten diesem Gen gewidmet sind, sind seine genauen Funktionen nur im Ansatz bekannt. In unserer Studie haben wir Ackerschmalwand Pflanzen ohne dieses Gen mit Chemikalien mutagenisiert und sie dann in schwankenden Lichtverhältnissen wachsen lassen. Dabei konnten wir Suppressormutanten finden, die überlebt haben. Durch diese Herangehensweise haben wir 11 Kandidatengene identifiziert, die eine mögliche Verbindung zum PGR5-Mechanismus aufweisen könnten. Einige dieser Mutanten hemmen das Photosystem II, das für das Einfangen der Lichtenergie verantwortlich ist, während andere Teile den Primärmetabolismus für Zucker und Stickstoff verändern.

Zusammenfassend bietet die Arbeit Einsichten in die Mechanismen, mit denen Pflanzen auf schwankende Lichtbedingungen reagieren, und identifiziert spezifische Gene, die in diesen Prozessen eine Rolle spielen.
KW  - photosynthesis
KW  - fluctuating light
KW  - PGR5
KW  - suppressor mutant screen
KW  - low NPQ
Y1  - 2023
ER  - 
TY  - JOUR
A1  - Olimi, Expedito
A1  - Kusstatscher, Peter
A1  - Wicaksono, Wisnu Adi
A1  - Abdelfattah, Ahmed
A1  - Cernava, Tomislav
A1  - Berg, Gabriele
T1  - Insights into the microbiome assembly during different growth stages and storage of strawberry plants
JF  - Environmental microbiome
N2  - Background: Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. <br /> Results: Strawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (10(7)-10(10) marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. <br /> Conclusion: Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety.
KW  - Fragaria x ananassa
KW  - Microbiome assembly
KW  - Fruit pathogens
KW  - Bacterial
KW  - communities
KW  - Fungal communities
KW  - Amplicon sequencing
KW  - CLSM
Y1  - 2022
U6  - https://doi.org/10.1186/s40793-022-00415-3
SN  - 2524-6372
VL  - 17
IS  - 1
PB  - BMC
CY  - London
ER  - 
TY  - JOUR
A1  - Scheffler, Christiane
A1  - Hermanussen, Michael
A1  - Rogol, Alan D.
T1  - Stunting
BT  - historical lessons that catch-up growth tells us for mapping growth restoration
JF  - Archives of disease in childhood : a peer review journal for health professionals and researchers covering conception to adolescence
Y1  - 2020
U6  - https://doi.org/10.1136/archdischild-2020-319240
SN  - 0003-9888
SN  - 1468-2044
VL  - 106
IS  - 8
SP  - 819
EP  - 820
PB  - BMJ Publishing Group
CY  - London
ER  - 
TY  - JOUR
A1  - Sandhage-Hofmann, Alexandra
A1  - Linstädter, Anja
A1  - Kindermann, Liana
A1  - Angombe, Simon
A1  - Amelung, Wulf
T1  - Conservation with elevated elephant densities sequesters carbon in soils despite losses of woody biomass
JF  - Global change biology
N2  - Nature conservation and restoration in terrestrial ecosystems is often focused on increasing the numbers of megafauna, expecting them to have positive impacts on ecological self-regulation processes and biodiversity. In sub-Saharan Africa, conservation efforts also aspire to protect and enhance biodiversity with particular focus on elephants. However, elephant browsing carries the risk of woody biomass losses. In this context, little is known about how increasing elephant numbers affects carbon stocks in soils, including the subsoils. We hypothesized that (1) increasing numbers of elephants reduce tree biomass, and thus the amount of C stored therein, resulting (2) in a loss of soil organic carbon (SOC). If true, a negative carbon footprint could limit the sustainability of elephant conservation from a global carbon perspective. To test these hypotheses, we selected plots of low, medium, and high elephant densities in two national parks and adjacent conservancies in the Namibian component of the Kavango Zambezi Transfrontier Area (KAZA), and quantified carbon storage in both woody vegetation and soils (1 m). Analyses were supplemented by the assessment of soil carbon isotopic composition. We found that increasing elephant densities resulted in a loss of tree carbon storage by 6.4 t ha(-1). However, and in contrast to our second hypothesis, SOC stocks increased by 4.7 t ha(-1) with increasing elephant densities. These higher SOC stocks were mainly found in the topsoil (0-30 cm) and were largely due to the formation of SOC from woody biomass. A second carbon input source into the soils was megaherbivore dung, which contributed with 0.02-0.323 t C ha(-1) year(-1) to ecosystem carbon storage in the low and high elephant density plots, respectively. Consequently, increasing elephant density does not necessarily lead to a negative C footprint, as soil carbon sequestration and transient C storage in dung almost compensate for losses in tree biomass.
KW  - carbon sequestration
KW  - conservation
KW  - elephants
KW  - soil organic carbon
KW  - woody biomass
Y1  - 2021
U6  - https://doi.org/10.1111/gcb.15779
SN  - 1354-1013
SN  - 1365-2486
VL  - 27
IS  - 19
SP  - 4601
EP  - 4614
PB  - Blackwell Science
CY  - Oxford [u.a.]
ER  - 
TY  - JOUR
A1  - Weyrich, Alexandra
A1  - Guerrero-Altamirano, Tania P.
A1  - Yasar, Selma
A1  - Czirjak, Gábor-Árpád
A1  - Wachter, Bettina
A1  - Fickel, Jörns
T1  - First Steps towards the development of epigenetic biomarkers in female cheetahs (Acinonyx jubatus)
JF  - Life : open access journal
N2  - Free-ranging cheetahs (Acinonyx jubatus) are generally healthy, whereas cheetahs under human care, such as those in zoological gardens, suffer from ill-defined infectious and degenerative pathologies. These differences are only partially explained by husbandry management programs because both groups share low genetic diversity. However, mounting evidence suggests that physiological differences between populations in different environments can be tracked down to differences in epigenetic signatures. Here, we identified differentially methylated regions (DMRs) between free-ranging cheetahs and conspecifics in zoological gardens and prospect putative links to pathways relevant to immunity, energy balance and homeostasis. Comparing epigenomic DNA methylation profiles obtained from peripheral blood mononuclear cells (PBMCs) from eight free-ranging female cheetahs from Namibia and seven female cheetahs living in zoological gardens within Europe, we identified DMRs of which 22 were hypermethylated and 23 hypomethylated. Hypermethylated regions in cheetahs under human care were located in the promoter region of a gene involved in host-pathogen interactions (KLC1) and in an intron of a transcription factor relevant for the development of pancreatic beta-cells, liver, and kidney (GLIS3). The most canonical mechanism of DNA methylation in promoter regions is assumed to repress gene transcription. Taken together, this could indicate that hypermethylation at the promoter region of KLC1 is involved in the reduced immunity in cheetahs under human care. This approach can be generalized to characterize DNA methylation profiles in larger cheetah populations under human care with a more granular longitudinal data collection, which, in the future, could be used to monitor the early onset of pathologies, and ultimately translate into the development of biomarkers with prophylactic and/or therapeutic potential.
KW  - animals under human care
KW  - captivity
KW  - carnivore
KW  - DNA methylation;
KW  - felidae
KW  - free-ranging
KW  - wildlife
Y1  - 2022
U6  - https://doi.org/10.3390/life12060920
SN  - 2075-1729
VL  - 12
IS  - 6
PB  - MDPI
CY  - Basel
ER  - 
TY  - JOUR
A1  - Lischeid, Gunnar
A1  - Webber, Heidi
A1  - Sommer, Michael
A1  - Nendel, Claas
A1  - Ewert, Frank
T1  - Machine learning in crop yield modelling
BT  - A powerful tool, but no surrogate for science
JF  - Agricultural and forest meteorology
N2  - Provisioning a sufficient stable source of food requires sound knowledge about current and upcoming threats to agricultural production. To that end machine learning approaches were used to identify the prevailing climatic and soil hydrological drivers of spatial and temporal yield variability of four crops, comprising 40 years yield data each from 351 counties in Germany. Effects of progress in agricultural management and breeding were subtracted from the data prior the machine learning modelling by fitting smooth non-linear trends to the 95th percentiles of observed yield data. An extensive feature selection approach was followed then to identify the most relevant predictors out of a large set of candidate predictors, comprising various soil and meteorological data. Particular emphasis was placed on studying the uniqueness of identified key predictors. Random Forest and Support Vector Machine models yielded similar although not identical results, capturing between 50% and 70% of the spatial and temporal variance of silage maize, winter barley, winter rapeseed and winter wheat yield. Equally good performance could be achieved with different sets of predictors. Thus identification of the most reliable models could not be based on the outcome of the model study only but required expert's judgement. Relationships between drivers and response often exhibited optimum curves, especially for summer air temperature and precipitation. In contrast, soil moisture clearly proved less relevant compared to meteorological drivers. In view of the expected climate change both excess precipitation and the excess heat effect deserve more attention in breeding as well as in crop modelling.
KW  - Crop modelling
KW  - Machine learning
KW  - Random forests
KW  - Support vector
KW  - machine
KW  - Feature selection
KW  - Equivocality
Y1  - 2021
U6  - https://doi.org/10.1016/j.agrformet.2021.108698
SN  - 0168-1923
SN  - 1873-2240
VL  - 312
PB  - Elsevier
CY  - Amsterdam
ER  - 
TY  - THES
A1  - Bulut, Mustafa
T1  - Assessing the genetic architecture underlying systemic responses to variable environments in crops using multi-omics
N2  - Plant metabolism serves as the primary mechanism for converting assimilated carbon into essential compounds crucial for plant growth and ultimately, crop yield. This renders it a focal point of research with significant implications. Despite notable strides in comprehending the genetic principles underpinning metabolism and yield, there remains a dearth of knowledge regarding the genetic factors responsible for trait variation under varying environmental conditions. Given the burgeoning global population and the advancing challenges posed by climate change, unraveling the intricacies of metabolic and yield responses to water scarcity became increasingly important in safeguarding food security.

Our research group has recently started to work on the genetic resources of legume species. To this end, the study presented here investigates the metabolic diversity across five different legume species at a tissue level, identifying species-specific biosynthesis of alkaloids as well as iso-/flavonoids with diverse functional groups, namely prenylation, phenylacylation as well as methoxylation, to create a resource for follow up studies investigation the metabolic diversity in natural diverse populations of legume species.

Following this, the second study investigates the genetic architecture of drought-induced changes in a global common bean population. Here, a plethora of quantitative trait loci (QTL) associated with various traits are identified by performing genome-wide association studies (GWAS), including for lipid signaling. On this site, overexpression of candidates highlighted the induction of several oxylipins reported to be pivotal in coping with harsh environmental conditions such as water scarcity.

Diverging from the common bean and GWAS, the following study focuses on identifying drought-related QTL in tomato using a bi-parental breeding population. This descriptive study highlights novel multi-omic QTL, including metabolism, photosynthesis as well as fruit setting, some of which are uniquely assigned under drought. Compared to conventional approaches using the bi-parental IL population, the study presented improves the resolution by assessing further backcrossed ILs, named sub-ILs.

In the final study, a photosynthetic gene, namely a PetM subunit of the cytochrome b6f complex encoding gene, involved in electron flow is characterized in an horticultural important crop. While several advances have been made in model organisms, this study highlights the transition of this fundamental knowledge to horticultural important crops, such as tomato, and investigates its function under differing light conditions. Overall, the presented thesis combines different strategies in unveiling the genetic components in multi-omic traits under drought using conventional breeding populations as well as a diverse global population. To this end, it allows a comparison of either approach and highlights their strengths and weaknesses.
N2  - Der pflanzliche Stoffwechsel ist der wichtigste Mechanismus für die Umwandlung von assimiliertem Kohlenstoff in essenzielle Verbindungen, die für das Pflanzenwachstum und letztlich den Ernteertrag entscheidend sind. Dies macht ihn zu einem Schwerpunkt der Forschung mit erheblichen Auswirkungen. Trotz bemerkenswerter Fortschritte beim Verständnis der genetischen Prinzipien, die dem Stoffwechsel und den Erträgen zugrunde liegen, gibt es nach wie vor einen Mangel an Wissen über die genetischen Faktoren, die für die Variation von Merkmalen unter verschiedenen Umweltbedingungen verantwortlich sind. In Anbetracht der wachsenden Weltbevölkerung und der zunehmenden Herausforderungen durch den Klimawandel wird es immer wichtiger, die Feinheiten des Stoffwechsels und des Ertrags auf Wasserknappheit zu entschlüsseln, um die Ernährungssicherheit zu gewährleisten.

Unsere Forschungsgruppe hat vor kurzem damit begonnen, sich mit den genetischen Ressourcen von Leguminosen zu befassen. Zu diesem Zweck untersucht die hier vorgestellte Studie die Stoffwechselvielfalt bei fünf verschiedenen Leguminosen auf Gewebeebene und identifiziert die artspezifische Biosynthese von Alkaloiden sowie Iso-/Flavonoiden mit verschiedenen funktionellen Gruppen, nämlich Prenylierung, Phenylacylierung sowie Methoxylierung, um eine Ressource für Folgestudien zu schaffen, die die Stoffwechselvielfalt in verschiedenen natürlichen Populationen von Leguminosen untersuchen.

Im Anschluss daran wird in der zweiten Studie die genetische Architektur trockenheitsbedingter Veränderungen in einer globalen Bohnenpopulation untersucht. Hier wird eine Vielzahl von quantitativen Merkmalsloci (QTL) identifiziert, die mit verschiedenen Merkmalen assoziiert sind, darunter auch für die Lipidsignalübertragung, unter Durchführung genomweite Assoziationsstudien (GWAS). Die Überexpression von Kandidaten auf dieser Seite hat die Induktion mehrerer Oxylipine hervorgehoben, die Berichten zufolge für die Bewältigung rauer Umweltbedingungen wie Wasserknappheit von zentraler Bedeutung sind.

Abweichend von der Bohne und der GWAS konzentriert sich die folgende Studie auf die Identifizierung trockenheitsbezogener QTL bei der Tomate unter Verwendung einer bi-elterlichen Zuchtpopulation. Diese deskriptive Studie hebt neuartige multi-omische QTL hervor, einschließlich für Stoffwechsel, Photosynthese und Fruchtansatz, von denen einige eindeutig dem Dürre-Stress zugeordnet werden. Im Vergleich zu herkömmlichen Ansätzen, bei denen die bi-elterliche IL-Population verwendet wird, verbessert die vorgestellte Studie die Auflösung, indem weitere rückgekreuzte ILs, so genannte sub-ILs, untersucht werden.

In der letzten Studie wird ein photosynthetisches Gen, nämlich eine PetM-Untereinheit des Cytochrom b6fKomplexes, das am Elektronenfluss beteiligt ist, in einer für den Gartenbau wichtigen Pflanze charakterisiert. Während bei Modellorganismen bereits zahlreiche wissenschaftliche Fortschritte erzielt wurden, beleuchtet diese Studie den Übergang dieses grundlegenden Wissens auf wichtige Gartenbaupflanzen wie die Tomate und untersucht ihre Funktion unter verschiedenen Lichtbedingungen.

Insgesamt werden in der vorliegenden Arbeit verschiedene Strategien kombiniert, um die genetischen Komponenten multi-omischer Merkmale bei Trockenheit aufzudecken, wobei sowohl konventionelle Zuchtpopulationen als auch eine vielfältige globale Population verwendet werden. Zu diesem Zweck ermöglicht sie einen Vergleich beider Ansätze und zeigt ihre Stärken und Schwächen auf.
KW  - genomics
KW  - metabolomics
KW  - phenomics
KW  - genome-wide association studies (GWAS)
KW  - genotype-by-Environmental interaction (GxE)
KW  - plasticity
Y1  - 2023
ER  - 
TY  - JOUR
A1  - Agarwal, Saloni
A1  - Warmt, Christian
A1  - Henkel, Jörg
A1  - Schrick, Livia
A1  - Nitsche, Andreas
A1  - Bier, Frank Fabian
T1  - Lateral flow-based nucleic acid detection of SARS-CoV-2 using enzymatic incorporation of biotin-labeled dUTP for POCT use
JF  - Analytical and bioanalytical chemistry : a merger of Fresenius' journal of analytical chemistry, Analusis and Quimica analitica
N2  - The degree of detrimental effects inflicted on mankind by the COVID-19 pandemic increased the need to develop ASSURED (Affordable, Sensitive, Specific, User-friendly, Rapid and Robust, Equipment-free, and Deliverable) POCT (point of care testing) to overcome the current and any future pandemics. Much effort in research and development is currently advancing the progress to overcome the diagnostic pressure built up by emerging new pathogens. LAMP (loop-mediated isothermal amplification) is a well-researched isothermal technique for specific nucleic acid amplification which can be combined with a highly sensitive immunochromatographic readout via lateral flow assays (LFA). Here we discuss LAMP-LFA robustness, sensitivity, and specificity for SARS-CoV-2 N-gene detection in cDNA and clinical swab-extracted RNA samples. The LFA readout is designed to produce highly specific results by incorporation of biotin and FITC labels to 11-dUTP and LF (loop forming forward) primer, respectively. The LAMP-LFA assay was established using cDNA for N-gene with an accuracy of 95.65%. To validate the study, 82 SARS-CoV-2-positive RNA samples were tested. Reverse transcriptase (RT)-LAMP-LFA was positive for the RNA samples with an accuracy of 81.66%; SARS-CoV-2 viral RNA was detected by RT-LAMP-LFA for as low as CT-33. Our method reduced the detection time to 15 min and indicates therefore that RT-LAMP in combination with LFA represents a promising nucleic acid biosensing POCT platform that combines with smartphone based semi-quantitative data analysis.
KW  - Point of care testing (POCT)
KW  - Lateral flow assay (LFA)
KW  - COVID-19
KW  - Reverse transcription loop-mediated isothermal amplification (RT-LAMP);
KW  - SARS-CoV-2 N-gene
Y1  - 2022
U6  - https://doi.org/10.1007/s00216-022-03880-4
SN  - 1618-2642
SN  - 1618-2650
VL  - 414
IS  - 10
SP  - 3177
EP  - 3186
PB  - Springer
CY  - Heidelberg
ER  - 
TY  - JOUR
A1  - Laun, Konstantin
A1  - Duffus, Benjamin R.
A1  - Wahlefeld, Stefan
A1  - Katz, Sagie
A1  - Belger, Dennis Heinz
A1  - Hildebrandt, Peter
A1  - Mroginski, Maria Andrea
A1  - Leimkühler, Silke
A1  - Zebger, Ingo
T1  - Infrared spectroscopy flucidates the inhibitor binding sites in a metal-dependent formate dehydrogenase
JF  - Chemistry - a European journal
N2  - Biological carbon dioxide (CO2) reduction is an important step by which organisms form valuable energy-richer molecules required for further metabolic processes. The Mo-dependent formate dehydrogenase (FDH) from Rhodobacter capsulatus catalyzes reversible formate oxidation to CO2 at a bis-molybdopterin guanine dinucleotide (bis-MGD) cofactor. To elucidate potential substrate binding sites relevant for the mechanism, we studied herein the interaction with the inhibitory molecules azide and cyanate, which are isoelectronic to CO2 and charged as formate. We employed infrared (IR) spectroscopy in combination with density functional theory (DFT) and inhibition kinetics. One distinct inhibitory molecule was found to bind to either a non-competitive or a competitive binding site in the secondary coordination sphere of the active site. Site-directed mutagenesis of key amino acid residues in the vicinity of the bis-MGD cofactor revealed changes in both non-competitive and competitive binding, whereby the inhibitor is in case of the latter interaction presumably bound between the cofactor and the adjacent Arg587.
KW  - CO2 reduction
KW  - DFT
KW  - formate oxidation
KW  - inhibition kinetics
KW  - IR
KW  - spectroscopy
KW  - molybdoenzyme
Y1  - 2022
U6  - https://doi.org/10.1002/chem.202201091
SN  - 0947-6539
SN  - 1521-3765
PB  - Wiley-VCH
CY  - Weinheim
ER  - 
TY  - JOUR
A1  - Gryzik, Stefanie
A1  - Hoang, Yen
A1  - Lischke, Timo
A1  - Mohr, Elodie
A1  - Venzke, Melanie
A1  - Kadner, Isabelle
A1  - Pötzsch, Josephine
A1  - Groth, Detlef
A1  - Radbruch, Andreas
A1  - Hutloff, Andreas
A1  - Baumgrass, Ria
T1  - Identification of a super-functional Tfh-like subpopulation in murine lupus by pattern perception
JF  - eLife
N2  - Dysregulated cytokine expression by T cells plays a pivotal role in the pathogenesis of autoimmune diseases. However, the identification of the corresponding pathogenic subpopulations is a challenge, since a distinction between physiological variation and a new quality in the expression of protein markers requires combinatorial evaluation. Here, we were able to identify a super-functional follicular helper T cell (Tfh)-like subpopulation in lupus-prone NZBxW mice with our binning approach "pattern recognition of immune cells (PRI)". PRI uncovered a subpopulation of IL-21(+) IFN-gamma(high) PD-1(low) CD40L(high) CXCR5(-) Bcl-6(-) T cells specifically expanded in diseased mice. In addition, these cells express high levels of TNF-alpha and IL-2, and provide B cell help for IgG production in an IL-21 and CD40L dependent manner. This super-functional T cell subset might be a superior driver of autoimmune processes due to a polyfunctional and high cytokine expression combined with Tfh-like properties.
Y1  - 2020
U6  - https://doi.org/10.7554/eLife.53226
SN  - 2050-084X
VL  - 9
PB  - eLife Sciences Publications
CY  - Cambridge
ER  - 
TY  - JOUR
A1  - Cordeiro, Andre M.
A1  - Andrade, Luis
A1  - Monteiro, Catarina C.
A1  - Leitao, Guilherme
A1  - Wigge, Philip Anthony
A1  - Saibo, Nelson J. M.
T1  - Phytochrome-interacting factors
BT  - a promising tool to improve crop productivity
JF  - Journal of experimental botany
N2  - Review exploring the regulation of PHYTOCHROME-INTERACTING FACTORS by light, their role in abiotic stress tolerance and plant architecture, and their influence on crop productivity. 
Light is a key determinant for plant growth, development, and ultimately yield. Phytochromes, red/far-red photoreceptors, play an important role in plant architecture, stress tolerance, and productivity. In the model plant Arabidopsis, it has been shown that PHYTOCHROME-INTERACTING FACTORS (PIFs; bHLH transcription factors) act as central hubs in the integration of external stimuli to regulate plant development. Recent studies have unveiled the importance of PIFs in crops. They are involved in the modulation of plant architecture and productivity through the regulation of cell division and elongation in response to different environmental cues. These studies show that different PIFs have overlapping but also distinct functions in the regulation of plant growth. Therefore, understanding the molecular mechanisms by which PIFs regulate plant development is crucial to improve crop productivity under both optimal and adverse environmental conditions. In this review, we discuss current knowledge of PIFs acting as integrators of light and other signals in different crops, with particular focus on the role of PIFs in responding to different environmental conditions and how this can be used to improve crop productivity.
KW  - Cold
KW  - drought
KW  - grain size
KW  - heat
KW  - light signaling
KW  - phytochrome
KW  - PIF
KW  - plant architecture
KW  - plant breeding
KW  - plant yield
KW  - salinity
Y1  - 2022
U6  - https://doi.org/10.1093/jxb/erac142
SN  - 0022-0957
SN  - 1460-2431
VL  - 73
IS  - 12
SP  - 3881
EP  - 3897
PB  - Oxford Univ. Press
CY  - Oxford
ER  - 
TY  - JOUR
A1  - Aichner, Bernhard
A1  - Dubbert, David
A1  - Kiel, Christine
A1  - Kohnert, Katrin
A1  - Ogashawara, Igor
A1  - Jechow, Andreas
A1  - Harpenslager, Sarah-Faye
A1  - Hölker, Franz
A1  - Nejstgaard, Jens Christian
A1  - Grossart, Hans-Peter
A1  - Singer, Gabriel
A1  - Wollrab, Sabine
A1  - Berger, Stella Angela
T1  - Spatial and seasonal patterns of water isotopes in northeastern German lakes
JF  - Earth system science data : ESSD
N2  - Water stable isotopes (delta O-18 and delta H-2) were analyzed in samples collected in lakes, associated with riverine systems in northeastern Germany, throughout 2020. The dataset (Aichner et al., 2021; https://doi.org/10.1594/PANGAEA.935633) is derived from water samples collected at (a) lake shores (sampled in March and July 2020), (b) buoys which were temporarily installed in deep parts of the lake (sampled monthly from March to October 2020), (c) multiple spatially distributed spots in four selected lakes (in September 2020), and (d) the outflow of Muggelsee (sampled biweekly from March 2020 to January 2021). At shores, water was sampled with a pipette from 40-60 cm below the water surface and directly transferred into a measurement vial, while at buoys a Limnos water sampler was used to obtain samples from 1 m below the surface. Isotope analysis was conducted at IGB Berlin, using a Picarro L2130-i cavity ring-down spectrometer, with a measurement uncertainty of < 0.15 parts per thousand (delta O-18) and < 0.0 parts per thousand (delta H-2). The data give information about the vegetation period and the full seasonal isotope amplitude in the sampled lakes and about spatial isotope variability in different branches of the associated riverine systems.
Y1  - 2022
U6  - https://doi.org/10.5194/essd-14-1857-2022
SN  - 1866-3508
SN  - 1866-3516
VL  - 14
IS  - 4
SP  - 1857
EP  - 1867
PB  - Copernicus
CY  - Göttingen
ER  - 
TY  - JOUR
A1  - Prüfer, Mareike
A1  - Wenger, Christian
A1  - Bier, Frank Fabian
A1  - Laux, Eva-Maria
A1  - Hölzel, Ralph
T1  - Activity of AC electrokinetically immobilized horseradish peroxidase
JF  - Electrophoresis : microfluidics, nanoanalysis & proteomics
N2  - Dielectrophoresis (DEP) is an AC electrokinetic effect mainly used to manipulate cells. Smaller particles, like virions, antibodies, enzymes, and even dye molecules can be immobilized by DEP as well. In principle, it was shown that enzymes are active after immobilization by DEP, but no quantification of the retained activity was reported so far. In this study, the activity of the enzyme horseradish peroxidase (HRP) is quantified after immobilization by DEP. For this, HRP is immobilized on regular arrays of titanium nitride ring electrodes of 500 nm diameter and 20 nm widths. The activity of HRP on the electrode chip is measured with a limit of detection of 60 fg HRP by observing the enzymatic turnover of Amplex Red and H2O2 to fluorescent resorufin by fluorescence microscopy. The initial activity of the permanently immobilized HRP equals up to 45% of the activity that can be expected for an ideal monolayer of HRP molecules on all electrodes of the array. Localization of the immobilizate on the electrodes is accomplished by staining with the fluorescent product of the enzyme reaction. The high residual activity of enzymes after AC field induced immobilization shows the method's suitability for biosensing and research applications.
KW  - AC electrokinetics
KW  - dielectrophoresis
KW  - enzyme activity
KW  - immobilization;
KW  - nanoelectrodes
Y1  - 2022
U6  - https://doi.org/10.1002/elps.202200073
SN  - 0173-0835
SN  - 1522-2683
SP  - 1920
EP  - 1933
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - JOUR
A1  - Kiemel, Katrin
A1  - De Cahsan, Binia
A1  - Paraskevopoulou, Sofia
A1  - Weithoff, Guntram
A1  - Tiedemann, Ralph
T1  - Mitochondrial genomes of the freshwater monogonont rotifer Brachionus fernandoi and of two additional B. calyciflorus sensu stricto lineages from Germany and the USA (Rotifera, Brachionidae)
JF  - Mitochondrial DNA. Part B-Resources
N2  - The Brachionus calyciflorus species complex was recently subdivided into four species, but genetic resources to resolve phylogenetic relationships within this complex are still lacking. We provide two complete mitochondrial (mt) genomes from B. calyciflorus sensu stricto (Germany, USA) and the mt coding sequences (cds) from a German B. fernandoi. Phylogenetic analysis placed our B. calyciflorus sensu stricto strains close to the published genomes of B. calyciflorus, forming the putative sister species to B. fernandoi. Global representatives of B. calyciflorus sensu stricto (i.e. Europe, USA, and China) are genetically closer related to each other than to B. fernandoi (average pairwise nucleotide diversity 0.079 intraspecific vs. 0.254 interspecific).
KW  - Mitogenome
KW  - cryptic species
KW  - Brachionus calyciflorus s
KW  - Brachionus
KW  - fernandoi
KW  - monogonont rotifer
Y1  - 2022
U6  - https://doi.org/10.1080/23802359.2022.2060765
SN  - 2380-2359
VL  - 7
IS  - 4
SP  - 646
EP  - 648
PB  - Routledge, Taylor & Francis Group
CY  - Abingdon
ER  - 
TY  - JOUR
A1  - Kernecker, Maria
A1  - Fienitz, Meike
A1  - Nendel, Claas
A1  - Paetzig, Marlene
A1  - Walzl, Karin Pirhofer
A1  - Raatz, Larissa
A1  - Schmidt, Martin
A1  - Wulf, Monika
A1  - Zscheischler, Jana
T1  - Transition zones across agricultural field boundaries for integrated landscape research and management of biodiversity and yields
JF  - Ecological solutions and evidence
N2  - Biodiversity conservation and agricultural production have been largely framed as separate goals for landscapes in the discourse on land use. Although there is an increasing tendency to move away from this dichotomy in theory, the tendency is perpetuated by the spatially explicit approaches used in research and management practice. Transition zones (TZ) have previously been defined as areas where two adjacent fields or patches interact, and so they occur abundantly throughout agricultural landscapes. Biodiversity patterns in TZ have been extensively studied, but their relationship to yield patterns and social-ecological dimensions has been largely neglected. Focusing on European, temperate agricultural landscapes, we outline three areas of research and management that together demonstrate how TZ might be used to facilitate an integrated landscape approach: (i) plant and animal species' use and response to boundaries and the resulting effects on yield, for a deeper understanding of how landscape structure shapes quantity and quality of TZ; (ii) local knowledge on field or patch-level management and its interactions with biodiversity and yield in TZ, and (iii) conflict prevention and collaborative management across land-use boundaries.
KW  - ecotones
KW  - field boundaries
KW  - functional traits
KW  - landscape complexity;
KW  - land-use conflicts
KW  - local knowledge
KW  - spillovers
Y1  - 2022
U6  - https://doi.org/10.1002/2688-8319.12122
SN  - 2688-8319
VL  - 3
IS  - 1
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - JOUR
A1  - Palma-Vera, Sergio E.
A1  - Reyer, Henry
A1  - Langhammer, Martina
A1  - Reinsch, Norbert
A1  - Derezanin, Lorena
A1  - Fickel, Jörns
A1  - Qanbari, Saber
A1  - Weitzel, Joachim M.
A1  - Franzenburg, Soeren
A1  - Hemmrich-Stanisak, Georg
A1  - Schön, Jennifer
T1  - Genomic characterization of the world's longest selection experiment in mouse reveals the complexity of polygenic traits
JF  - BMC Biology
N2  - Background
Long-term selection experiments are a powerful tool to understand the genetic background of complex traits. The longest of such experiments has been conducted in the Research Institute for Farm Animal Biology (FBN), generating extreme mouse lines with increased fertility, body mass, protein mass and endurance. For >140 generations, these lines have been maintained alongside an unselected control line, representing a valuable resource for understanding the genetic basis of polygenic traits. However, their history and genomes have not been reported in a comprehensive manner yet. Therefore, the aim of this study is to provide a summary of the breeding history and phenotypic traits of these lines along with their genomic characteristics. We further attempt to decipher the effects of the observed line-specific patterns of genetic variation on each of the selected traits. 

Results
Over the course of >140 generations, selection on the control line has given rise to two extremely fertile lines (>20 pups per litter each), two giant growth lines (one lean, one obese) and one long-distance running line. Whole genome sequencing analysis on 25 animals per line revealed line-specific patterns of genetic variation among lines, as well as high levels of homozygosity within lines. This high degree of distinctiveness results from the combined effects of long-term continuous selection, genetic drift, population bottleneck and isolation. Detection of line-specific patterns of genetic differentiation and structural variation revealed multiple candidate genes behind the improvement of the selected traits. 

Conclusions
The genomes of the Dummerstorf trait-selected mouse lines display distinct patterns of genomic variation harbouring multiple trait-relevant genes. Low levels of within-line genetic diversity indicate that many of the beneficial alleles have arrived to fixation alongside with neutral alleles. This study represents the first step in deciphering the influence of selection and neutral evolutionary forces on the genomes of these extreme mouse lines and depicts the genetic complexity underlying polygenic traits.
KW  - Mouse
KW  - Fertility
KW  - Body mass
KW  - Endurance
KW  - Selective breeding
KW  - Genetic
KW  - drift
KW  - Bottleneck
KW  - Whole genome sequencing
KW  - Single-nucleotide
KW  - polymorphism
KW  - Structural variation
Y1  - 2022
U6  - https://doi.org/10.1186/s12915-022-01248-9
SN  - 1741-7007
VL  - 20
IS  - 1
PB  - BMC
CY  - London
ER  - 
TY  - JOUR
A1  - Apriyanto, Ardha
A1  - Compart, Julia
A1  - Fettke, Jörg
T1  - A review of starch, a unique biopolymer - structure, metabolism and in planta modifications
JF  - Plant science : an international journal of experimental plant biology
N2  - Starch is a complex carbohydrate polymer produced by plants and especially by crops in huge amounts. It consists of amylose and amylopectin, which have alpha-1,4-and alpha-1,6-linked glucose units. Despite this simple chemistry, the entire starch metabolism is complex, containing various (iso)enzymes/proteins. However, whose interplay is still not yet fully understood. Starch is essential for humans and animals as a source of nutrition and energy. Nowadays, starch is also commonly used in non-food industrial sectors for a variety of purposes. However, native starches do not always satisfy the needs of a wide range of (industrial) applications. This review summarizes the structural properties of starch, analytical methods for starch characterization, and in planta starch modifications.
KW  - starch
KW  - starch structure
KW  - starch surface
KW  - starch modifications;
KW  - analytics
Y1  - 2022
U6  - https://doi.org/10.1016/j.plantsci.2022.111223
SN  - 0168-9452
SN  - 1873-2259
VL  - 318
PB  - Elsevier Science
CY  - Amsterdam [u.a.]
ER  - 
TY  - JOUR
A1  - Wiebke, Ullmann
T1  - Warum hat Bayern mehr Feldhasen als Brandenburg?
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 46
EP  - 47
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - JOUR
A1  - Teckentrup, Lisa
T1  - Gefahr an jeder Ecke
BT  - wie die Landschaftsstruktur die Verteilung von Beutetieren beeinflusst
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 54
EP  - 55
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - JOUR
A1  - Schäfer, Merlin
T1  - Mut macht einsam
BT  - der Einfluss von Persönlichkeit auf das Zusammenleben von Tieren
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 52
EP  - 53
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - JOUR
A1  - Kowalski, Gabriele Joanna
T1  - Auf dem Sprung
BT  - wie bewegen sich Tiere durch die Landschaft?
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 41
EP  - 42
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - JOUR
A1  - Raatz, Larissa
T1  - Wirtschaften in einer reich strukturierten Landschaft - geht das ?
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 32
EP  - 33
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - JOUR
A1  - Lozada Gobilard, Sissi Donna
T1  - Können auch Pflanzen zwischen den Söllen "wandern"
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 30
EP  - 31
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - JOUR
A1  - Litwin, Magdalena
A1  - Colangeli, Pierluigi
T1  - Wie und wohin reisen Wasserflöhe?
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 28
EP  - 29
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - JOUR
A1  - Maaß, Stefanie
T1  - Blick in die Zukunft
BT  - wie werden sich Pflanzengemeinschaften in Brandenburg verändern?
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 24
EP  - 25
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - JOUR
A1  - Weiß, Lina
A1  - Wulff, Monika
T1  - Veränderung der Landnutzung in der nord-westlichen Uckermark von 1780 bis heute
JF  - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018
Y1  - 2019
SP  - 20
EP  - 21
PB  - oerding print GmbH
CY  - Braunschweig
ER  - 
TY  - BOOK
ED  - Berlin-Brandenburgisches Institut für Biodiverstätsforschung, 
T1  - Vielfalt in der Uckermark
BT  - Forschungsprojekte 2015 - 2018
Y1  - 2019
PB  - oerding print GmbH
CY  - Braunschweig
ER  -