TY - GEN A1 - Paraskevopoulou, Sofia A1 - Dennis, Alice B. A1 - Weithoff, Guntram A1 - Hartmann, Stefanie A1 - Tiedemann, Ralph T1 - Within species expressed genetic variability and gene expression response to different temperatures in the rotifer Brachionus calyciflorus sensu stricto T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Genetic divergence is impacted by many factors, including phylogenetic history, gene flow, genetic drift, and divergent selection. Rotifers are an important component of aquatic ecosystems, and genetic variation is essential to their ongoing adaptive diversification and local adaptation. In addition to coding sequence divergence, variation in gene expression may relate to variable heat tolerance, and can impose ecological barriers within species. Temperature plays a significant role in aquatic ecosystems by affecting species abundance, spatio-temporal distribution, and habitat colonization. Recently described (formerly cryptic) species of the Brachionus calyciflorus complex exhibit different temperature tolerance both in natural and in laboratory studies, and show that B. calyciflorus sensu stricto (s.s.) is a thermotolerant species. Even within B. calyciflorus s.s., there is a tendency for further temperature specializations. Comparison of expressed genes allows us to assess the impact of stressors on both expression and sequence divergence among disparate populations within a single species. Here, we have used RNA-seq to explore expressed genetic diversity in B. calyciflorus s.s. in two mitochondrial DNA lineages with different phylogenetic histories and differences in thermotolerance. We identify a suite of candidate genes that may underlie local adaptation, with a particular focus on the response to sustained high or low temperatures. We do not find adaptive divergence in established candidate genes for thermal adaptation. Rather, we detect divergent selection among our two lineages in genes related to metabolism (lipid metabolism, metabolism of xenobiotics). T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 796 Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-441050 SN - 1866-8372 IS - 796 ER - TY - JOUR A1 - Paraskevopoulou, Sofia A1 - Dennis, Alice B. A1 - Weithoff, Guntram A1 - Hartmann, Stefanie A1 - Tiedemann, Ralph T1 - Within species expressed genetic variability and gene expression response to different temperatures in the rotifer Brachionus calyciflorus sensu stricto JF - PLoS ONE N2 - Genetic divergence is impacted by many factors, including phylogenetic history, gene flow, genetic drift, and divergent selection. Rotifers are an important component of aquatic ecosystems, and genetic variation is essential to their ongoing adaptive diversification and local adaptation. In addition to coding sequence divergence, variation in gene expression may relate to variable heat tolerance, and can impose ecological barriers within species. Temperature plays a significant role in aquatic ecosystems by affecting species abundance, spatio-temporal distribution, and habitat colonization. Recently described (formerly cryptic) species of the Brachionus calyciflorus complex exhibit different temperature tolerance both in natural and in laboratory studies, and show that B. calyciflorus sensu stricto (s.s.) is a thermotolerant species. Even within B. calyciflorus s.s., there is a tendency for further temperature specializations. Comparison of expressed genes allows us to assess the impact of stressors on both expression and sequence divergence among disparate populations within a single species. Here, we have used RNA-seq to explore expressed genetic diversity in B. calyciflorus s.s. in two mitochondrial DNA lineages with different phylogenetic histories and differences in thermotolerance. We identify a suite of candidate genes that may underlie local adaptation, with a particular focus on the response to sustained high or low temperatures. We do not find adaptive divergence in established candidate genes for thermal adaptation. Rather, we detect divergent selection among our two lineages in genes related to metabolism (lipid metabolism, metabolism of xenobiotics). Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0223134 SN - 1932-6203 VL - 9 IS - 14 PB - PLoS ONE CY - San Francisco, California ER - TY - JOUR A1 - Raatz, Larissa T1 - Wirtschaften in einer reich strukturierten Landschaft - geht das ? JF - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018 Y1 - 2019 SP - 32 EP - 33 PB - oerding print GmbH CY - Braunschweig ER - TY - JOUR A1 - Busch, Verena A1 - Klaus, Valentin Helmut A1 - Schaefer, Deborah A1 - Prati, Daniel A1 - Boch, Steffen A1 - Müller, Jörg A1 - Chiste, Melanie A1 - Mody, Karsten A1 - Blüthgen, Nico A1 - Fischer, Markus A1 - Hölzel, Norbert A1 - Kleinebecker, Till T1 - Will I stay or will I go? Plant species-specific response and tolerance to high land-use intensity in temperate grassland ecosystems JF - Journal of vegetation science KW - community composition KW - ecological strategies KW - Ellenberg indicator values KW - land-use intensity niche KW - plant functional traits KW - species-specific niche breadth KW - species-specific niche optima KW - temperate grasslands KW - vegetation dynamics Y1 - 2019 U6 - https://doi.org/10.1111/jvs.12749 SN - 1100-9233 SN - 1654-1103 VL - 30 IS - 4 SP - 674 EP - 686 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Litwin, Magdalena A1 - Colangeli, Pierluigi T1 - Wie und wohin reisen Wasserflöhe? JF - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018 Y1 - 2019 SP - 28 EP - 29 PB - oerding print GmbH CY - Braunschweig ER - TY - JOUR A1 - Wiebke, Ullmann T1 - Warum hat Bayern mehr Feldhasen als Brandenburg? JF - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018 Y1 - 2019 SP - 46 EP - 47 PB - oerding print GmbH CY - Braunschweig ER - TY - GEN A1 - Dierschke, Hartmut A1 - Heinken, Thilo T1 - Vorwort T2 - Tuexenia : Mitteilungen der Floristisch-Soziologischen Arbeitsgemeinschaft Y1 - 2019 UR - https://www.tuexenia.de/publications/tuexenia/Tuexenia_2019_NS_039_0007-0007.pdf SN - 0722-494X IS - 39 SP - 7 EP - 7 PB - Floristisch-Soziologische Arbeitsgemeinschaft CY - Göttingen ER - TY - BOOK ED - Berlin-Brandenburgisches Institut für Biodiverstätsforschung, T1 - Vielfalt in der Uckermark BT - Forschungsprojekte 2015 - 2018 Y1 - 2019 PB - oerding print GmbH CY - Braunschweig ER - TY - JOUR A1 - Weiß, Lina A1 - Wulff, Monika T1 - Veränderung der Landnutzung in der nord-westlichen Uckermark von 1780 bis heute JF - Vielfalt in der Uckermark : Forschungsprojekte 2015 - 2018 Y1 - 2019 SP - 20 EP - 21 PB - oerding print GmbH CY - Braunschweig ER - TY - JOUR A1 - Tabares Jimenez, Ximena del Carmen A1 - Zimmermann, Heike Hildegard A1 - Dietze, Elisabeth A1 - Ratzmann, Gregor A1 - Belz, Lukas A1 - Vieth-Hillebrand, Andrea A1 - Dupont, Lydie A1 - Wilkes, Heinz A1 - Mapani, Benjamin A1 - Herzschuh, Ulrike T1 - Vegetation state changes in the course of shrub encroachment in an African savanna since about 1850 CE and their potential drivers JF - Ecology and evolution N2 - Shrub encroachment has far-reaching ecological and economic consequences in many ecosystems worldwide. Yet, compositional changes associated with shrub encroachment are often overlooked despite having important effects on ecosystem functioning. We document the compositional change and potential drivers for a northern Namibian Combretum woodland transitioning into a Terminalia shrubland. We use a multiproxy record (pollen, sedimentary ancient DNA, biomarkers, compound-specific carbon (delta C-13) and deuterium (delta D) isotopes, bulk carbon isotopes (delta(13)Corg), grain size, geochemical properties) from Lake Otjikoto at high taxonomical and temporal resolution. We provide evidence that state changes in semiarid environments may occur on a scale of one century and that transitions between stable states can span around 80 years and are characterized by a unique vegetation composition. We demonstrate that the current grass/woody ratio is exceptional for the last 170 years, as supported by n-alkane distributions and the delta C-13 and delta(13)Corg records. Comparing vegetation records to environmental proxy data and census data, we infer a complex network of global and local drivers of vegetation change. While our delta D record suggests physiological adaptations of woody species to higher atmospheric pCO(2) concentration and drought, our vegetation records reflect the impact of broad-scale logging for the mining industry, and the macrocharcoal record suggests a decrease in fire activity associated with the intensification of farming. Impact of selective grazing is reflected by changes in abundance and taxonomical composition of grasses and by an increase of nonpalatable and trampling-resistant taxa. In addition, grain-size and spore records suggest changes in the erodibility of soils because of reduced grass cover. Synthesis. We conclude that transitions to an encroached savanna state are supported by gradual environmental changes induced by management strategies, which affected the resilience of savanna ecosystems. In addition, feedback mechanisms that reflect the interplay between management legacies and climate change maintain the encroached state. KW - climate change KW - fossil pollen KW - land-use change KW - savanna ecology KW - sedimentary ancient DNA KW - state and transition KW - tree-grass interactions Y1 - 2019 U6 - https://doi.org/10.1002/ece3.5955 SN - 2045-7758 VL - 10 IS - 2 SP - 962 EP - 979 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Guislain, Alexis A1 - Beisner, Beatrix E. A1 - Köhler, Jan T1 - Variation in species light acquisition traits under fluctuating light regimes BT - implications for non-equilibrium coexistence JF - Oikos N2 - Resource distribution heterogeneity offers niche opportunities for species with different functional traits to develop and potentially coexist. Available light (photosynthetically active radiation or PAR) for suspended algae (phytoplankton) may fluctuate greatly over time and space. Species-specific light acquisition traits capture important aspects of the ecophysiology of phytoplankton and characterize species growth at either limiting or saturating daily PAR supply. Efforts have been made to explain phytoplankton coexistence using species-specific light acquisition traits under constant light conditions, but not under fluctuating light regimes that should facilitate non-equilibrium coexistence. In the well-mixed, hypertrophic Lake TaiHu (China), we incubated the phytoplankton community in bottles placed either at fixed depths or moved vertically through the water column to mimic vertical mixing. Incubations at constant depths received only the diurnal changes in light, while the moving bottles received rapidly fluctuating light. Species-specific light acquisition traits of dominant cyanobacteria (Anabaena flos-aquae, Microcystis spp.) and diatom (Aulacoseira granulata, Cyclotella pseudostelligera) species were characterized from their growth-light relationships that could explain relative biomasses along the daily PAR gradient under both constant and fluctuating light. Our study demonstrates the importance of interspecific differences in affinities to limiting and saturating light for the coexistence of phytoplankton species in spatially heterogeneous light conditions. Furthermore, we observed strong intraspecific differences in light acquisition traits between incubation under constant and fluctuating light - leading to the reversal of light utilization strategies of species. This increased the niche space for acclimated species, precluding competitive exclusion. These observations could enhance our understanding of the mechanisms behind the Paradox of the Plankton. KW - niche partitioning KW - phytoplankton photoacclimation Y1 - 2018 U6 - https://doi.org/10.1111/oik.05297 SN - 0030-1299 SN - 1600-0706 VL - 128 IS - 5 SP - 716 EP - 728 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Grafen, Anika A1 - Schumacher, Fabian A1 - Chithelen, Janice A1 - Kleuser, Burkhard A1 - Beyersdorf, Niklas A1 - Schneider-Schaulies, Jürgen T1 - Use of Acid Ceramidase and Sphingosine Kinase Inhibitors as Antiviral Compounds Against Measles Virus Infection of Lymphocytes in vitro JF - Frontiers in Cell and Developmental Biology N2 - As structural membrane components and signaling effector molecules sphingolipids influence a plethora of host cell functions, and by doing so also the replication of viruses. Investigating the effects of various inhibitors of sphingolipid metabolism in primary human peripheral blood lymphocytes (PBL) and the human B cell line BJAB we found that not only the sphingosine kinase (SphK) inhibitor SKI-II, but also the acid ceramidase inhibitor ceranib-2 efficiently inhibited measles virus (MV) replication. Virus uptake into the target cells was not grossly altered by the two inhibitors, while titers of newly synthesized MV were reduced by approximately 1 log (90%) in PBL and 70-80% in BJAB cells. Lipidomic analyses revealed that in PBL SKI-II led to increased ceramide levels, whereas in BJAB cells ceranib-2 increased ceramides. SKI-II treatment decreased sphingosine-1-phosphate (S1P) levels in PBL and BJAB cells. Furthermore, we found that MV infection of lymphocytes induced a transient (0.5-6 h) increase in S1P, which was prevented by SKI-II. Investigating the effect of the inhibitors on the metabolic (mTORC1) activity we found that ceranib-2 reduced the phosphorylation of p70 S6K in PBL, and that both inhibitors, ceranib-2 and SKI-II, reduced the phosphorylation of p70 S6K in BJAB cells. As mTORC1 activity is required for efficient MV replication, this effect of the inhibitors is one possible antiviral mechanism. In addition, reduced intracellular S1P levels affect a number of signaling pathways and functions including Hsp90 activity, which was reported to be required for MV replication. Accordingly, we found that pharmacological inhibition of Hsp90 with the inhibitor 17-AAG strongly impaired MV replication in primary PBL. Thus, our data suggest that treatment of lymphocytes with both, acid ceramidase and SphK inhibitors, impair MV replication by affecting a number of cellular activities including mTORC1 and Hsp90, which alter the metabolic state of the cells causing a hostile environment for the virus. KW - measles virus KW - sphingolipids KW - acid ceramidase KW - acid ceramidase inhibitor ceranib-2 KW - sphingosine kinase KW - sphingosine kinase inhibitor SKI-II Y1 - 2019 U6 - https://doi.org/10.3389/fcell.2019.00218 SN - 2296-634X VL - 7 PB - Frontiers Research Foundation CY - Lausanne ER - TY - THES A1 - Numberger, Daniela T1 - Urban wastewater and lakes as habitats for bacteria and potential vectors for pathogens T1 - Urbane Abwässer und Seen als Habitat für Bakterien und potentielle Vektoren für Krankheitserreger N2 - Wasser ist lebensnotwendig und somit eine essentielle Ressource. Jedoch sind unsere Süßwasser-Ressourcen begrenzt und ihre Erhaltung daher besonders wichtig. Verschmutzungen mit Chemikalien und Krankheitserregern, die mit einer wachsenden Bevölkerung und Urbanisierung einhergehen, verschlechtern die Qualität unseres Süßwassers. Außerdem kann Wasser als Übertragungsvektor für Krankheitserreger dienen und daher wasserbürtige Krankheiten verursachen. Der Leibniz-Forschungsverbund INFECTIONS‘21 untersuchte innerhalb der interdisziplinären Forschungsgruppe III - „Wasser", Gewässer als zentralen Mittelpunkt für Krankheiterreger. Dabei konzentrierte man sich auf Clostridioides difficile sowie aviäre Influenza A-Viren, von denen angenommen wird, dass sie in die Gewässer ausgeschieden werden. Ein weiteres Ziel bestand darin, die bakterielle Gemeinschaften eines Klärwerkes der deutschen Hauptstadt Berlin zu charakterisieren, um anschließend eine Bewertung des potentiellen Gesundheitsrisikos geben zu können. Bakterielle Gemeinschaften des Roh- und Klarwassers aus dem Klärwerk unterschieden sich signifikant voneinander. Der Anteil an Darm-/Fäkalbakterien war relativ niedrig und potentielle Darmpathogene wurden größtenteils aus dem Rohwasser entfernt. Ein potentielles Gesundheitsrisiko konnte allerdings von potentiell pathogenen Legionellen wie L. lytica festgestellt werden, deren relative Abundanz im Klarwasser höher war als im Rohwasser. Es wurden außerdem drei C. difficile-Isolate aus den Klärwerk-Rohwasser und einem städtischen Badesee in Berlin (Weisser See) gewonnen und sequenziert. Die beiden Isolate aus dem Klärwerk tragen keine Toxin-Gene, wohingegen das Isolat aus dem See Toxin-Gene besitzt. Alle drei Isolate sind sehr nah mit humanen Stämmen verwandt. Dies deutet auf ein potentielles, wenn auch sporadisches Gesundheitsrisiko hin. (Aviäre) Influenza A-Viren wurden in 38.8% der untersuchten Sedimentproben mittels PCR detektiert, aber die Virusisolierung schlug fehl. Ein Experiment mit beimpften Wasser- und Sedimentproben zeigte, dass für die Isolierung aus Sedimentproben eine relativ hohe Viruskonzentration nötig ist. In Wasserproben ist jedoch ein niedriger Titer an Influenza A-Viren ausreichend, um eine Infektion auszulösen. Es konnte zudem auch festgestellt werden, dass sich „Madin-Darby Canine Kidney (MDCK)―-Zellkulturen im Gegensatz zu embryonierten Hühnereiern besser eignen, um Influenza A-Viren aus Sediment zu isolieren. Zusammenfassend lässt sich sagen, dass diese Arbeit mögliche Gesundheitsrisiken aufgedeckt hat, wie etwa durch Legionellen im untersuchten Berliner Klärwerk, deren relative Abundanz in geklärtem Abwasser höher ist als im Rohwasser. Desweiteren wird indiziert, dass Abwasser und Gewässer als Reservoir und Vektor für pathogene Organismen dienen können, selbst für nicht-typische Wasser-Pathogene wie C. difficile. N2 - Water is essential to life and thus, an essential resource. However, freshwater resources are limited and their maintenance is crucial. Pollution with chemicals and pathogens through urbanization and a growing population impair the quality of freshwater. Furthermore, water can serve as vector for the transmission of pathogens resulting in water-borne illness. The Interdisciplinary Research Group III – "Water" of the Leibniz alliance project INFECTIONS‘21 investigated water as a hub for pathogens focusing on Clostridioides difficile and avian influenza A viruses that may be shed into the water. Another aim of this study was to characterize the bacterial communities in a wastewater treatment plant (WWTP) of the capital Berlin, Germany to further assess potential health risks associated with wastewater management practices. Bacterial communities of WWTP inflow and effluent differed significantly. The proportion of fecal/enteric bacteria was relatively low and OTUs related to potential enteric pathogens were largely removed from inflow to effluent. However, a health risk might exist as an increased relative abundance of potential pathogenic Legionella spp. such as L. lytica was observed. Three Clostridioides difficile isolates from wastewater inflow and an urban bathing lake in Berlin (‗Weisser See‘) were obtained and sequenced. The two isolates from the wastewater did not carry toxin genes, whereas the isolate from the lake was positive for the toxin genes. All three isolates were closely related to human strains. This indicates a potential, but rather sporadic health risk. Avian influenza A viruses were detected in 38.8% of sediment samples by PCR, but virus isolation failed. An experiment with inoculated freshwater and sediment samples showed that virus isolation from sediment requires relatively high virus concentrations and worked much better in Madin-Darby Canine Kidney (MDCK) cell cultures than in embryonated chicken eggs, but low titre of influenza contamination in freshwater samples was sufficient to recover virus. In conclusion, this work revealed potential health risks coming from bacterial groups with pathogenic potential such as Legionella spp. whose relative abundance is higher in the released effluent than in the inflow of the investigated WWTP. It further indicates that water bodies such as wastewater and lake sediments can serve as reservoir and vector, even for non-typical water-borne or water-transmitted pathogens such as C. difficile. KW - water KW - Wasser KW - bacteria KW - Bakterien KW - influenza A viruses KW - Influenza A Viren KW - pathogens KW - Krankheitserreger Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-437095 ER - TY - JOUR A1 - Tarazona, Natalia A. A1 - Machatschek, Rainhard Gabriel A1 - Lendlein, Andreas T1 - Unraveling the interplay between abiotic hydrolytic degradation and crystallization of bacterial polyesters comprising short and medium side-chain-length Polyhydroxyalkanoates JF - Biomacromolecules : an interdisciplinary journal focused at the interface of polymer science and the biological sciences N2 - Polyhydroxyalkanoates (PHAs) have attracted attention as degradable (co)polyesters which can be produced by microorganisms with variations in the side chain. This structural variation influences not only the thermomechanical properties of the material but also its degradation behavior. Here, we used Langmuir monolayers at the air-water (A-W) interface as suitable models for evaluating the abiotic degradation of two PHAs with different side-chain lengths and crystallinity. By controlling the polymer state (semi crystalline, amorphous), the packing density, the pH, and the degradation mechanism, we could draw several significant conclusions. (i) The maximum degree of crystallinity for a PHA film to be efficiently degraded up to pH = 12.3 is 40%. (ii) PHA made of repeating units with shorter side-chain length are more easily hydrolyzed under alkaline conditions. The efficiency of alkaline hydrolysis decreased by about 65% when the polymer was 40% crystalline. (iii) In PHA films with a relatively high initial crystallinity, abiotic degradation initiated a chemicrystallization phenomenon, detected as an increase in the storage modulus (E'). This could translate into an increase in brittleness and reduction in the material degradability. Finally, we demonstrate the stability of the measurement system for long-term experiments, which allows degradation conditions for polymers that could closely simulate real-time degradation. Y1 - 2019 U6 - https://doi.org/10.1021/acs.biomac.9b01458 SN - 1525-7797 SN - 1526-4602 VL - 21 IS - 2 SP - 761 EP - 771 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Dehm, Daniel A1 - Krumbholz, Julia A1 - Baunach, Martin A1 - Wiebach, Vincent A1 - Hinrichs, Katrin A1 - Guljamow, Arthur A1 - Tabuchi, Takeshi A1 - Jenke-Kodama, Holger A1 - Süssmuth, Roderich D. A1 - Dittmann-Thünemann, Elke T1 - Unlocking the spatial control of secondary metabolism uncovers hidden natural product diversity in nostoc punctiforme JF - ACS chemical biology N2 - Filamentous cyanobacteria belong to the most prolific producers of structurally unique and biologically active natural products, yet the majority of biosynthetic gene clusters predicted for these multicellular collectives are currently orphan. Here, we present a systems analysis of secondary metabolite gene expression in the model strain Nostoc punctiforme PCC73102 using RNA-seq and fluorescence reporter analysis. Our data demonstrate that the majority of the cryptic gene clusters are not silent but are expressed with regular or sporadic pattern. Cultivation of N. punctiforme using high-density fermentation overrules the spatial control and leads to a pronounced upregulation of more than 50% of biosynthetic gene clusters. Our data suggest that a combination of autocrine factors, a high CO2 level, and high light account for the upregulation of individual pathways. Our overarching study not only sheds light on the strategies of filamentous cyanobacteria to share the enormous metabolic burden connected with the production of specialized molecules but provides an avenue for the genome-based discovery of natural products in multicellular cyanobacteria as exemplified by the discovery of highly unusual variants of the tricyclic peptide microviridin. Y1 - 2019 U6 - https://doi.org/10.1021/acschembio.9b00240 SN - 1554-8929 SN - 1554-8937 VL - 14 IS - 6 SP - 1271 EP - 1279 PB - American Chemical Society CY - Washington ER - TY - THES A1 - Teckentrup, Lisa T1 - Understanding predator-prey interactions T1 - Verstehen von Räuber-Beute-Interaktionen BT - the role of fear in structuring prey communities BT - die Rolle der Angst bei der Strukturierung von Beutetiergemeinschaften N2 - Predators can have numerical and behavioral effects on prey animals. While numerical effects are well explored, the impact of behavioral effects is unclear. Furthermore, behavioral effects are generally either analyzed with a focus on single individuals or with a focus on consequences for other trophic levels. Thereby, the impact of fear on the level of prey communities is overlooked, despite potential consequences for conservation and nature management. In order to improve our understanding of predator-prey interactions, an assessment of the consequences of fear in shaping prey community structures is crucial. In this thesis, I evaluated how fear alters prey space use, community structure and composition, focusing on terrestrial mammals. By integrating landscapes of fear in an existing individual-based and spatially-explicit model, I simulated community assembly of prey animals via individual home range formation. The model comprises multiple hierarchical levels from individual home range behavior to patterns of prey community structure and composition. The mechanistic approach of the model allowed for the identification of underlying mechanism driving prey community responses under fear. My results show that fear modified prey space use and community patterns. Under fear, prey animals shifted their home ranges towards safer areas of the landscape. Furthermore, fear decreased the total biomass and the diversity of the prey community and reinforced shifts in community composition towards smaller animals. These effects could be mediated by an increasing availability of refuges in the landscape. Under landscape changes, such as habitat loss and fragmentation, fear intensified negative effects on prey communities. Prey communities in risky environments were subject to a non-proportional diversity loss of up to 30% if fear was taken into account. Regarding habitat properties, I found that well-connected, large safe patches can reduce the negative consequences of habitat loss and fragmentation on prey communities. Including variation in risk perception between prey animals had consequences on prey space use. Animals with a high risk perception predominantly used safe areas of the landscape, while animals with a low risk perception preferred areas with a high food availability. On the community level, prey diversity was higher in heterogeneous landscapes of fear if individuals varied in their risk perception compared to scenarios in which all individuals had the same risk perception. Overall, my findings give a first, comprehensive assessment of the role of fear in shaping prey communities. The linkage between individual home range behavior and patterns at the community level allows for a mechanistic understanding of the underlying processes. My results underline the importance of the structure of the landscape of fear as a key driver of prey community responses, especially if the habitat is threatened by landscape changes. Furthermore, I show that individual landscapes of fear can improve our understanding of the consequences of trait variation on community structures. Regarding conservation and nature management, my results support calls for modern conservation approaches that go beyond single species and address the protection of biotic interactions. N2 - Raubtiere beeinflussen ihre Beute durch die Verringerung der Anzahl (numerische Effekte) und durch das Hervorrufen von Verhaltensänderungen (Verhaltenseffekte). Während die Auswirkungen von numerischen Effekten gut erforscht sind, sind die Auswirkungen von Verhaltenseffekten unklar. Außerdem werden bei Verhaltensänderungen selten die Auswirkungen auf die Beutetiergemeinschaft betrachtet, sondern nur die Effekte auf einzelne Individuen bzw. Arten oder auf andere Stufen der Nahrungskette. Eine Betrachtung auf der Stufe der Beutetiergemeinschaft ist jedoch sehr wichtig, da nur so ein umfassendes Verständnis von Räuber-Beute-Gemeinschaften möglich ist. In der vorliegenden Arbeit habe ich die Auswirkungen von Verhaltenseffekten auf die Raumnutzung und die Struktur von Beutetiergemeinschaften untersucht. Dazu habe ich ein räumliches Modell benutzt, welches die Bildung von Beutetiergemeinschaften über den individuellen Aufbau von Aktionsräumen der Beutetiere simuliert. Die Einrichtung von Aktionsräumen basiert dabei auf der Nahrungsverfügbarkeit in der Landschaft und auf dem vom Beutetier wahrgenommenen Risiko von einem Räuber gefressen zu werden. Die räumliche Verteilung des wahrgenommenen Risikos wird auch als Landschaft der Angst bezeichnet. Meine Ergebnisse zeigen, dass sich die Raumnutzung und die Struktur der Beutetiergemeinschaft durch Verhaltenseffekte verändern. Unter dem Einfluss von Angst haben die Beutetiere ihre Aktionsräume in sicherere Bereiche der Landschaft verlegt. Außerdem hat sich in risikoreichen Landschaften die Vielfalt der Beutetiere verringert und die Zusammensetzung zu Arten mit einem geringen Körpergewicht verschoben. Wenn die Beutetiergemeinschaft Landschaftsveränderungen wie z.B. dem Verlust oder der Zerschneidung von Lebensraum ausgesetzt war, haben sich die Auswirkungen von Verhaltenseffekten weiter verstärkt. Durch eine Erhöhung der Größe und Anzahl von Rückzugsräumen, die nicht von Räubern erreicht werden können, sowie deren Verbindung in der Landschaft, kann die Stärke dieser Effekte jedoch begrenzt werden. In einem weiteren Schritt habe ich die Auswirkungen von Unterschieden in der Risikowahrnehmung zwischen Individuen untersucht. Diese Unterschiede haben dazu geführt, dass Tiere mit einer hohen Risikowahrnehmung sich ihren Aktionsraum vornehmlich in sicheren Bereichen gesucht haben, während Tiere mit einer geringen Risikowahrnehmung Bereiche mit einer hohen Nahrungsverfügbarkeit genutzt haben. Dadurch konnten sich in Landschaften mit unterschiedlichen Risiken, vielfältigere Beutetiergemeinschaften etablieren, als in Landschaften mit gleichmäßigem Risiko. Insgesamt geben meine Ergebnisse einen guten Überblick über die Auswirkungen von Verhaltenseffekten auf Beutetiergemeinschaften. Die Verknüpfung von individuellem Verhalten mit Mustern auf der Gemeinschaftsebene erlaubt es die zugrundeliegenden Mechanismen zu identifizieren und zu verstehen. In Bezug auf den Naturschutz unterstützen meine Ergebnisse den Ruf nach modernen Schutzmaßnahmen, die über den Erhalt von einzelnen Arten hinausgehen und den Schutz von Beziehungen zwischen Arten einbeziehen. KW - ecology KW - landscape of fear KW - predator-prey KW - movement KW - biodiversity KW - Ökologie KW - Landschaft der Angst KW - Räuber-Beute KW - Bewegung KW - Biodiversität Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-431624 ER - TY - THES A1 - Schäfer, Merlin T1 - Understanding and predicting global change impacts on migratory birds T1 - Verständnis und Vorhersage von Auswirkungen des globalen Wandels auf Zugvögel N2 - This is a publication-based dissertation comprising three original research stud-ies (one published, one submitted and one ready for submission; status March 2019). The dissertation introduces a generic computer model as a tool to investigate the behaviour and population dynamics of animals in cyclic environments. The model is further employed for analysing how migratory birds respond to various scenarios of altered food supply under global change. Here, ecological and evolutionary time-scales are considered, as well as the biological constraints and trade-offs the individual faces, which ultimately shape response dynamics at the population level. Further, the effect of fine-scale temporal patterns in re-source supply are studied, which is challenging to achieve experimentally. My findings predict population declines, altered behavioural timing and negative carry-over effects arising in migratory birds under global change. They thus stress the need for intensified research on how ecological mechanisms are affected by global change and for effective conservation measures for migratory birds. The open-source modelling software created for this dissertation can now be used for other taxa and related research questions. Overall, this thesis improves our mechanistic understanding of the impacts of global change on migratory birds as one prerequisite to comprehend ongoing global biodiversity loss. The research results are discussed in a broader ecological and scientific context in a concluding synthesis chapter. N2 - Dies ist eine publikationsbasierte Dissertation, welche aus drei wissenschaftlichen Originalstudien (eine publiziert, eine eingereicht und eine einreichbar; Stand März 2019) besteht. Die Dissertation stellt ein generisches Computermodell bereit, um das Verhalten und die Populationsdynamik von Tieren zu untersuchen, welche saisonale Umweltbedingungen erfahren. Mit diesem Computermodell untersuche ich in der vorliegenden Thesis, wie Zugvögel auf verschiedene Szenarien veränderter Nahrungsverfügbarkeit reagieren, welche im Rahmen des globalen Wandels wahrscheinlich sind. Dabei werden ökologische und evolutionäre Zeitskalen berücksichtigt. Außerdem werden biologisch bedingte Einschränkungen und Zielkonflikte einbezogen, welche das einzelne Individuum erfährt, die aber letztendlich auch das Geschehen auf Populationsebene bestimmen. Weiterhin studiere ich mit dem erstellten Computermodell am Beispiel des Weißstorchs, wie sich feinskalige Zeitmuster in der Nahrungsverfügbarkeit auf Zugvögel auswirken. Solche Studien würden eine enorme experimentelle Herausforderung darstellen. Die im Rahmen dieser Dissertation entstandene frei verfügbare Modellierungs-Software kann nun für andere Taxa und verwandte Forschungsfragen eingesetzt werden. Nach meinen Ergebnissen ist im Zuge des globalen Wandels mit verstärkten Populationsabnahmen bei Zugvögeln zu rechnen, sowie mit Änderungen im zeitlichen Verhaltensablauf und nichtlinearen negativen Carry-over-Effekten. Dies verdeutlicht, wie wichtig es ist, die vom globalen Wandel betroffenen ökologischen Mechanismen näher zu erforschen sowie effektive Schutzmaßnahmen für Zugvögel zu entwickeln. Allgemein erhöht die Dissertation unser mechanistisches Verständnis davon, wie sich der globale Wandel auf bedrohte Zugvogelarten auswirkt und damit die globale Biodiversität beeinflusst. Die Forschungsergebnisse werden in einem abschließenden Synthese-Kapitel zusammenführend diskutiert. KW - global change KW - migratory birds KW - life-history theory KW - movement ecology KW - bird migration KW - optimal annual routine model KW - stochastic dynamic programming KW - full annual cycle KW - population dynamics KW - carry-over effects KW - white stork KW - behavioural ecology KW - adaptation KW - mechanistic model KW - energetics KW - behavioural timing KW - reproduction KW - globaler Wandel KW - Zugvögel KW - Lebenszyklustheorie KW - Bewegungsökologie KW - Vogelzug KW - "Optimal annual routine"-Modell KW - stochastisch-dynamische Optimierung KW - vollständiger Jahreszyklus KW - Populationsdynamik KW - Carry-over-Effekte KW - Weißstorch KW - Verhaltensökologie KW - Anpassung KW - mechanistisches Modell KW - Energetik KW - Verhaltens-Timing KW - Reproduktion Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-439256 ER - TY - JOUR A1 - Betke, Alexander A1 - Lokstein, Heiko T1 - Two-photon excitation spectroscopy of photosynthetic light-harvesting complexes and pigments JF - Faraday discussions N2 - In addition to (bacterio)chlorophylls, (B)Chls, light-harvesting complexes (LHCs) bind carotenoids, and/or their oxygen derivatives, xanthophylls. Xanthophylls/carotenoids have pivotal functions in LHCs: in stabilization of the structure, as accessory light-harvesting pigments and, probably most importantly, in photoprotection. Xanthophylls are assumed to be involved in the not yet fully understood mechanism of energy-dependent (qE) non-photochemical quenching of Chl fluorescence (NPQ) in higher plants and algae. The so called "xanthophyll cycle" appears to be crucial in this regard. The molecular mechanism(s) of xanthophyll involvement in qE/NPQ have not been established, yet. Moreover, excitation energy transfer (EET) processes involving carotenoids are also difficult to study, due to the fact that transitions between the ground state (S-0, 1(1)A(g)(-)) and the lowest excited singlet state (S-1, 2(1)A(g)(-)) of carotenoids are optically one-photon forbidden ("dark"). Two-photon excitation spectroscopic techniques have been used for more than two decades to study one-photon forbidden states of carotenoids. In the current study, two-photon excitation profiles of LHCII samples containing different xanthophyll complements were measured in the presumed 1(1)A(g)(-) -> 2(1)A(g)(-) (S-0 -> S-1) transition spectral region of the xanthophylls, as well as for isolated chlorophylls a and b in solution. The results indicate that direct two-photon excitation of Chls in this spectral region is dominant over that by xanthophylls. Implications of the results for proposed mechanism(s) of qE/NPQ will be discussed. Y1 - 2019 U6 - https://doi.org/10.1039/c8fd00198g SN - 1359-6640 SN - 1364-5498 VL - 216 SP - 494 EP - 506 PB - Royal Society of Chemistry CY - Cambridge ER - TY - GEN A1 - Radchuk, Viktoriia A1 - Kramer-Schadt, Stephanie A1 - Grimm, Volker T1 - Transferability of mechanistic ecological models is about emergence T2 - Trends in ecology and evolution Y1 - 2019 U6 - https://doi.org/10.1016/j.tree.2019.01.010 SN - 0169-5347 SN - 1872-8383 VL - 34 IS - 6 SP - 487 EP - 488 PB - Elsevier CY - London ER - TY - THES A1 - Jehle, Franziska T1 - Tracking self-assembly of hierarchically structured soft matter Y1 - 2019 ER - TY - JOUR A1 - Fages, Antoine A1 - Hanghoj, Kristian A1 - Khan, Naveed A1 - Gaunitz, Charleen A1 - Seguin-Orlando, Andaine A1 - Leonardi, Michela A1 - Constantz, Christian McCrory A1 - Gamba, Cristina A1 - Al-Rasheid, Khaled A. S. A1 - Albizuri, Silvia A1 - Alfarhan, Ahmed H. A1 - Allentoft, Morten A1 - Alquraishi, Saleh A1 - Anthony, David A1 - Baimukhanov, Nurbol A1 - Barrett, James H. A1 - Bayarsaikhan, Jamsranjav A1 - Benecke, Norbert A1 - Bernaldez-Sanchez, Eloisa A1 - Berrocal-Rangel, Luis A1 - Biglari, Fereidoun A1 - Boessenkool, Sanne A1 - Boldgiv, Bazartseren A1 - Brem, Gottfried A1 - Brown, Dorcas A1 - Burger, Joachim A1 - Crubezy, Eric A1 - Daugnora, Linas A1 - Davoudi, Hossein A1 - Damgaard, Peter de Barros A1 - de Chorro y de Villa-Ceballos, Maria de los Angeles A1 - Deschler-Erb, Sabine A1 - Detry, Cleia A1 - Dill, Nadine A1 - Oom, Maria do Mar A1 - Dohr, Anna A1 - Ellingvag, Sturla A1 - Erdenebaatar, Diimaajav A1 - Fathi, Homa A1 - Felkel, Sabine A1 - Fernandez-Rodriguez, Carlos A1 - Garcia-Vinas, Esteban A1 - Germonpre, Mietje A1 - Granado, Jose D. A1 - Hallsson, Jon H. A1 - Hemmer, Helmut A1 - Hofreiter, Michael A1 - Kasparov, Aleksei A1 - Khasanov, Mutalib A1 - Khazaeli, Roya A1 - Kosintsev, Pavel A1 - Kristiansen, Kristian A1 - Kubatbek, Tabaldiev A1 - Kuderna, Lukas A1 - Kuznetsov, Pavel A1 - Laleh, Haeedeh A1 - Leonard, Jennifer A. A1 - Lhuillier, Johanna A1 - von Lettow-Vorbeck, Corina Liesau A1 - Logvin, Andrey A1 - Lougas, Lembi A1 - Ludwig, Arne A1 - Luis, Cristina A1 - Arruda, Ana Margarida A1 - Marques-Bonet, Tomas A1 - Silva, Raquel Matoso A1 - Merz, Victor A1 - Mijiddorj, Enkhbayar A1 - Miller, Bryan K. A1 - Monchalov, Oleg A1 - Mohaseb, Fatemeh A. A1 - Morales, Arturo A1 - Nieto-Espinet, Ariadna A1 - Nistelberger, Heidi A1 - Onar, Vedat A1 - Palsdottir, Albina H. A1 - Pitulko, Vladimir A1 - Pitskhelauri, Konstantin A1 - Pruvost, Melanie A1 - Sikanjic, Petra Rajic A1 - Papesa, Anita Rapan A1 - Roslyakova, Natalia A1 - Sardari, Alireza A1 - Sauer, Eberhard A1 - Schafberg, Renate A1 - Scheu, Amelie A1 - Schibler, Jorg A1 - Schlumbaum, Angela A1 - Serrand, Nathalie A1 - Serres-Armero, Aitor A1 - Shapiro, Beth A1 - Seno, Shiva Sheikhi A1 - Shevnina, Irina A1 - Shidrang, Sonia A1 - Southon, John A1 - Star, Bastiaan A1 - Sykes, Naomi A1 - Taheri, Kamal A1 - Taylor, William A1 - Teegen, Wolf-Rudiger A1 - Vukicevic, Tajana Trbojevic A1 - Trixl, Simon A1 - Tumen, Dashzeveg A1 - Undrakhbold, Sainbileg A1 - Usmanova, Emma A1 - Vahdati, Ali A1 - Valenzuela-Lamas, Silvia A1 - Viegas, Catarina A1 - Wallner, Barbara A1 - Weinstock, Jaco A1 - Zaibert, Victor A1 - Clavel, Benoit A1 - Lepetz, Sebastien A1 - Mashkour, Marjan A1 - Helgason, Agnar A1 - Stefansson, Kari A1 - Barrey, Eric A1 - Willerslev, Eske A1 - Outram, Alan K. A1 - Librado, Pablo A1 - Orlando, Ludovic T1 - Tracking five millennia of horse management with extensive ancient genome time series JF - Cell N2 - Horse domestication revolutionized warfare and accelerated travel, trade, and the geographic expansion of languages. Here, we present the largest DNA time series for a non-human organism to date, including genome-scale data from 149 ancient animals and 129 ancient genomes (>= 1-fold coverage), 87 of which are new. This extensive dataset allows us to assess the modem legacy of past equestrian civilisations. We find that two extinct horse lineages existed during early domestication, one at the far western (Iberia) and the other at the far eastern range (Siberia) of Eurasia. None of these contributed significantly to modern diversity. We show that the influence of Persian-related horse lineages increased following the Islamic conquests in Europe and Asia. Multiple alleles associated with elite-racing, including at the MSTN "speed gene," only rose in popularity within the last millennium. Finally, the development of modem breeding impacted genetic diversity more dramatically than the previous millennia of human management. Y1 - 2019 U6 - https://doi.org/10.1016/j.cell.2019.03.049 SN - 0092-8674 SN - 1097-4172 VL - 177 IS - 6 SP - 1419 EP - 1435 PB - Cell Press CY - Cambridge ER - TY - GEN A1 - Moga, A. A1 - Robinson, T. A1 - Leimkühler, Silke T1 - Towards reconstituting a biosynthetic pathway within compartmentalized GUVs T2 - European biophysics journal : with biophysics letters ; an international journal of biophysics Y1 - 2019 SN - 0175-7571 SN - 1432-1017 VL - 48 SP - S218 EP - S218 PB - Springer CY - New York ER - TY - JOUR A1 - Heger, Tina A1 - Bernard-Verdier, Maud A1 - Gessler, Arthur A1 - Greenwood, Alex D. A1 - Grossart, Hans-Peter A1 - Hilker, Monika A1 - Keinath, Silvia A1 - Kowarik, Ingo A1 - Küffer, Christoph A1 - Marquard, Elisabeth A1 - Mueller, Johannes A1 - Niemeier, Stephanie A1 - Onandia, Gabriela A1 - Petermann, Jana S. A1 - Rillig, Matthias C. A1 - Rodel, Mark-Oliver A1 - Saul, Wolf-Christian A1 - Schittko, Conrad A1 - Tockner, Klement A1 - Joshi, Jasmin Radha A1 - Jeschke, Jonathan M. T1 - Towards an Integrative, Eco-Evolutionary Understanding of Ecological Novelty: Studying and Communicating Interlinked Effects of Global Change JF - Bioscience N2 - Global change has complex eco-evolutionary consequences for organisms and ecosystems, but related concepts (e.g., novel ecosystems) do not cover their full range. Here we propose an umbrella concept of "ecological novelty" comprising (1) a site-specific and (2) an organism-centered, eco-evolutionary perspective. Under this umbrella, complementary options for studying and communicating effects of global change on organisms, ecosystems, and landscapes can be included in a toolbox. This allows researchers to address ecological novelty from different perspectives, e.g., by defining it based on (a) categorical or continuous measures, (b) reference conditions related to sites or organisms, and (c) types of human activities. We suggest striving for a descriptive, non-normative usage of the term "ecological novelty" in science. Normative evaluations and decisions about conservation policies or management are important, but require additional societal processes and engagement with multiple stakeholders. KW - Anthropocene KW - eco-evolutionary experience KW - global change KW - novel ecosystems KW - shifting baselines Y1 - 2019 U6 - https://doi.org/10.1093/biosci/biz095 SN - 0006-3568 SN - 1525-3244 VL - 69 IS - 11 SP - 888 EP - 899 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Ma, Xuemin A1 - Balazadeh, Salma A1 - Mueller-Roeber, Bernd T1 - Tomato fruit ripening factor NOR controls leaf senescence JF - Journal of experimental botany N2 - NAC transcription factors (TFs) are important regulators of expressional reprogramming during plant development, stress responses, and leaf senescence. NAC TFs also play important roles in fruit ripening. In tomato (Solanum lycopersicum), one of the best characterized NACs involved in fruit ripening is NON-RIPENING (NOR), and the non-ripening (nor) mutation has been widely used to extend fruit shelf life in elite varieties. Here, we show that NOR additionally controls leaf senescence. Expression of NOR increases with leaf age, and developmental as well as dark-induced senescence are delayed in the nor mutant, while overexpression of NOR promotes leaf senescence. Genes associated with chlorophyll degradation as well as senescence-associated genes (SAGs) show reduced and elevated expression, respectively, in nor mutants and NOR overexpressors. Overexpression of NOR also stimulates leaf senescence in Arabidopsis thaliana. In tomato, NOR supports senescence by directly and positively regulating the expression of several senescence-associated genes including, besides others, SlSAG15 and SlSAG113, SlSGR1, and SlYLS4. Finally, we find that another senescence control NAC TF, namely SlNAP2, acts upstream of NOR to regulate its expression. Our data support a model whereby NAC TFs have often been recruited by higher plants for both the control of leaf senescence and fruit ripening. KW - Aging KW - leaf KW - NAC KW - non-ripening KW - NOR KW - senescence KW - tomato KW - transcription factor Y1 - 2019 U6 - https://doi.org/10.1093/jxb/erz098 SN - 0022-0957 SN - 1460-2431 VL - 70 IS - 10 SP - 2727 EP - 2740 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Olas, Justyna Jadwiga A1 - Wahl, Vanessa T1 - Tissue-specific NIA1 and NIA2 expression in Arabidopsis thaliana JF - Plant Signaling & Behavior N2 - Nitrogen (N) is an essential macronutrient for optimal plant growth and ultimately for crop productivity Nitrate serves as the main N source for most plants. Although it seems a well-established fact that nitrate concentration affects flowering, its molecular mode of action in flowering time regulation was poorly understood. We recently found how nitrate, present at the shoot apical meristem (SAM), controls flowering time In this short communication, we present data on the tissue-specific expression patterns of NITRATE REDUCTASE 1 (NIA1) and NIA2 in planta. We show that transcripts of both genes are present throughout the life cycle of Arabidopsis thaliana plants with NIA1 being predominantly active in leaves and NIA2 in meristematic tissues. KW - Arabidopsis KW - NIA1 KW - NIA2 KW - nitrate assimilation KW - plant development KW - RNA in situ hybridization KW - expression KW - cell KW - and tissue-specificity Y1 - 2019 U6 - https://doi.org/10.1080/15592324.2019.1656035 SN - 1559-2316 SN - 1559-2324 VL - 14 IS - 11 PB - Taylor & Francis Group CY - Philadelphia ER - TY - JOUR A1 - Broeker, Nina K. A1 - Roske, Yvette A1 - Valleriani, Angelo A1 - Stephan, Mareike Sophia A1 - Andres, Dorothee A1 - Koetz, Joachim A1 - Heinemann, Udo A1 - Barbirz, Stefanie T1 - Time-resolved DNA release from an O-antigen-specific Salmonella bacteriophage with a contractile tail JF - The journal of biological chemistry N2 - Myoviruses, bacteriophages with T4-like architecture, must contract their tails prior to DNA release. However, quantitative kinetic data on myovirus particle opening are lacking, although they are promising tools in bacteriophage-based antimicrobial strategies directed against Gram-negative hosts. For the first time, we show time-resolved DNA ejection from a bacteriophage with a contractile tail, the multi-O-antigen-specific Salmonella myovirus Det7. DNA release from Det7 was triggered by lipopolysaccharide (LPS) O-antigen receptors and notably slower than in noncontractile-tailed siphoviruses. Det7 showed two individual kinetic steps for tail contraction and particle opening. Our in vitro studies showed that highly specialized tailspike proteins (TSPs) are necessary to attach the particle to LPS. A P22-like TSP confers specificity for the Salmonella Typhimurium O-antigen. Moreover, crystal structure analysis at 1.63 angstrom resolution confirmed that Det7 recognized the Salmonella Anatum O-antigen via an E15-like TSP, DettilonTSP. DNA ejection triggered by LPS from either host showed similar velocities, so particle opening is thus a process independent of O-antigen composition and the recognizing TSP. In Det7, at permissive temperatures TSPs mediate O-antigen cleavage and couple cell surface binding with DNA ejection, but no irreversible adsorption occurred at low temperatures. This finding was in contrast to short-tailed Salmonella podoviruses, illustrating that tailed phages use common particle-opening mechanisms but have specialized into different infection niches. KW - bacteriophage KW - lipopolysaccharide (YLPS) KW - structural biology KW - DNA viruses KW - glycobiology KW - fluorescence KW - Salmonella enterica KW - contractile tail KW - DNA ejection KW - O-antigen specificity KW - Salmonella myovirus KW - tailspike protein KW - molecular machine Y1 - 2019 U6 - https://doi.org/10.1074/jbc.RA119.008133 SN - 1083-351X VL - 294 IS - 31 SP - 11751 EP - 11761 PB - American Society for Biochemistry and Molecular Biology CY - Bethesda ER - TY - JOUR A1 - Tang, Jing A1 - Werchmeister, Rebecka Maria Larsen A1 - Preda, Loredana A1 - Huang, Wei A1 - Zheng, Zhiyong A1 - Leimkühler, Silke A1 - Wollenberger, Ulla A1 - Xiao, Xinxin A1 - Engelbrekt, Christian A1 - Ulstrup, Jens A1 - Zhang, Jingdong T1 - Three-dimensional sulfite oxidase bioanodes based on graphene functionalized carbon paper for sulfite/O-2 biofuel cells JF - ACS catalysis N2 - We have developed a three-dimensional (3D) graphene electrode suitable for the immobilization of human sulfite oxidase (hSO), which catalyzes the electrochemical oxidation of sulfite via direct electron transfer (DET). The electrode is fabricated by drop-casting graphene-polyethylenimine (G-P) composites on carbon papers (CPs) precoated with graphene oxide (GO). The negatively charged hSO can be adsorbed electrostatically on the positively charged matrix (G-P) on CP electrodes coated with GO (CPG), with a proper orientation for accelerated DET. Notably, further electrochemical reduction of G-P on CPG electrodes leads to a 9-fold increase of the saturation catalytic current density (j(m)) for sulfite oxidation reaching 24.4 +/- 0.3 mu A to cm(-2), the highest value among reported DET-based hSO bioelectrodes. The increased electron transfer rate plays a dominating role in the enhancement of direct enzymatic current because of the improved electric contact of hSO with the electrode, The optimized hSO bioelectrode shows a significant catalytic rate (k(cat): 25.6 +/- 0.3 s(-1)) and efficiency (k(cat)/K-m: 0.231 +/- 0.003 s(-1) mu M-1) compared to the reported hSO bioelectrodes. The assembly of the hSO bioanode and a commercial platinum biocathode allows the construction of sulfite/O-2 enzymatic biofuel cells (EBFCs) with flowing fuels. The optimized EBFC displays an open-circuit voltage (OCV) of 0.64 +/- 0.01 V and a maximum power density of 61 +/- 6 mu W cm(-2) (122 +/- 12 mW m(-3)) at 30 degrees C, which exceeds the best reported value by more than 6 times. KW - enzymatic biofuel cell KW - reduced graphene oxide KW - sulfite oxidase KW - carbon paper KW - direct electron transfer Y1 - 2019 U6 - https://doi.org/10.1021/acscatal.9b01715 SN - 2155-5435 VL - 9 IS - 7 SP - 6543 EP - 6554 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Werchmeister, Rebecka Maria Larsen A1 - Tang, Jing A1 - Xiao, Xinxin A1 - Wollenberger, Ulla A1 - Hjuler, Hans Aage A1 - Ulstrup, Jens A1 - Zhang, Jingdong T1 - Three-Dimensional Bioelectrodes Utilizing Graphene Based Bioink JF - Journal of The Electrochemical Society N2 - Enzyme immobilization using nanomaterials offers new approaches to enhanced bioelectrochemical performance and is essential for the preparation of bioelectrodes with high reproducibility and low cost. In this report, we describe the development of new three-dimensional (3D) bioelectrodes by immobilizing a "bioink" of glucose oxidase (GOD) in a matrix of reduced graphene oxides (RGOs), polyethylenimine (PEI), and ferrocene carboxylic acid (FcCOOH) on carbon paper (CP). CP with 3D interwoven carbon fibers serves as a solid porous and electronically conducting skeleton, providing large surface areas and space for loading the bioink and diffusion of substrate molecules, respectively. RGO enhances contact between the GOD-matrix and CP, maintaining high conductivity. The composition of the bioink has been systematically optimized. The GOD bioelectrodes show linearly increasing electrocatalytic oxidation current toward glucose concentration up to 48 mM. A hybrid enzymatic biofuel cell equipped with the GOD bioelectrode as a bioanode and a platinum cathode furthermore registers a maximum power density of 5.1 mu W cm(-2) and an open circuit voltage of 0.40 V at 25 degrees C. The new method reported of preparing a bioelectrode by drop-casting the bioink onto the substrate electrode is facile and versatile, with the potential of application also for other enzymatic bioelectrodes. Y1 - 2019 U6 - https://doi.org/10.1149/2.0261916jes SN - 0013-4651 SN - 1945-7111 VL - 166 IS - 16 SP - G170 EP - G177 PB - The Electrochemical Society CY - Pennington ER - TY - THES A1 - Behm, Laura Vera Johanna T1 - Thermoresponsive Zellkultursubstrate für zeitlich-räumlich gesteuertes Auswachsen neuronaler Zellen T1 - Thermoresponsive cell culture substrates for spatio-temporal controlled outgrowth of neuronal cells N2 - Ein wichtiges Ziel der Neurowissenschaften ist das Verständnis der komplexen und zugleich faszinierenden, hochgeordneten Vernetzung der Neurone im Gehirn, welche neuronalen Prozessen, wie zum Beispiel dem Wahrnehmen oder Lernen wie auch Neuropathologien zu Grunde liegt. Für verbesserte neuronale Zellkulturmodelle zur detaillierten Untersuchung dieser Prozesse ist daher die Rekonstruktion von geordneten neuronalen Verbindungen dringend erforderlich. Mit Oberflächenstrukturen aus zellattraktiven und zellabweisenden Beschichtungen können neuronale Zellen und ihre Neuriten in vitro strukturiert werden. Zur Kontrolle der neuronalen Verbindungsrichtung muss das Auswachsen der Axone zu benachbarten Zellen dynamisch gesteuert werden, zum Beispiel über eine veränderliche Zugänglichkeit der Oberfläche. In dieser Arbeit wurde untersucht, ob mit thermoresponsiven Polymeren (TRP) beschichtete Zellkultursubstrate für eine dynamische Kontrolle des Auswachsens neuronaler Zellen geeignet sind. TRP können über die Temperatur von einem zellabweisenden in einen zellattraktiven Zustand geschaltet werden, womit die Zugänglichkeit der Oberfläche für Zellen dynamisch gesteuert werden kann. Die TRP-Beschichtung wurde mikrostrukturiert, um einzelne oder wenige neuronale Zellen zunächst auf der Oberfläche anzuordnen und das Auswachsen der Zellen und Neuriten über definierte TRP-Bereiche in Abhängigkeit der Temperatur zeitlich und räumlich zu kontrollieren. Das Protokoll wurde mit der neuronalen Zelllinie SH-SY5Y etabliert und auf humane induzierte Neurone übertragen. Die Anordnung der Zellen konnte bei Kultivierung im zellabweisenden Zustand des TRPs für bis zu 7 Tage aufrecht erhalten werden. Durch Schalten des TRPs in den zellattraktiven Zustand konnte das Auswachsen der Neuriten und Zellen zeitlich und räumlich induziert werden. Immunozytochemische Färbungen und Patch-Clamp-Ableitungen der Neurone demonstrierten die einfache Anwendbarkeit und Zellkompatibilität der TRP-Substrate. Eine präzisere räumliche Kontrolle des Auswachsens der Zellen sollte durch lokales Schalten der TRP-Beschichtung erreicht werden. Dafür wurden Mikroheizchips mit Mikroelektroden zur lokalen Jouleschen Erwärmung der Substratoberfläche entwickelt. Zur Evaluierung der generierten Temperaturprofile wurde eine Temperaturmessmethode entwickelt und die erhobenen Messwerte mit numerisch simulierten Werten abgeglichen. Die Temperaturmessmethode basiert auf einfach zu applizierenden Sol-Gel-Schichten, die den temperatursensitiven Fluoreszenzfarbstoff Rhodamin B enthalten. Sie ermöglicht oberflächennahe Temperaturmessungen in trockener und wässriger Umgebung mit hoher Orts- und Temperaturauflösung. Numerische Simulationen der Temperaturprofile korrelierten gut mit den experimentellen Daten. Auf dieser Basis konnten Geometrie und Material der Mikroelektroden hinsichtlich einer lokal stark begrenzten Temperierung optimiert werden. Ferner wurden für die Kultvierung der Zellen auf den Mikroheizchips eine Zellkulturkammer und Kontaktboard für die elektrische Kontaktierung der Mikroelektroden geschaffen. Die vorgestellten Ergebnisse demonstrieren erstmalig das enorme Potential thermoresponsiver Zellkultursubstrate für die zeitlich und räumlich gesteuerte Formation geordneter neuronaler Verbindungen in vitro. Zukünftig könnte dies detaillierte Studien zur neuronalen Informationsverarbeitung oder zu Neuropathologien an relevanten, humanen Zellmodellen ermöglichen. N2 - An important goal of neurosciences is to understand the fascinating, complex and highly ordered neuronal circuits of the brain that are underlying important neuronal processes such as learning and memory, as well as neuropathologies. For detailed studies of these processes improved neuronal cell culture models that allow a reconstruction of ordered neuronal connections are crucial. Neuronal cells can be patterned in vitro with structured surface coatings of cell repellent and cell attractive substances. For controlling also the direction of neuronal cell connections the outgrowth of the axons towards neighbouring cells needs to be dynamically controlled, which can be achieved for example by surface structures that can be changed due to switchable surface properties. The main goal of this work was to explore if cell culture substrates with coatings of thermoresponsive polymer (TRP) are suitable for dynamically controlling the outgrowth of neuronal cells. TRPs can be switched via temperature between a cell repellent and a cell attractive state, which enables a dynamic change of surface properties. The TRP coating was microstructured in order to pattern neuronal cells and to spatio-temporally control the outgrowth of cells and neurites across defined TRP-coated areas in dependence of the temperature. The protocol was established with the neuronal cell line SH-SY5Y and transferred to human induced neuronal cells. The cell patterns could be maintained for up to 7 days of cultivation when the TRP was kept in the cell repellent state. By switching the TRP to the cell attractive state the outgrowth of neurites and cells was induced at defined time points and areas. Immunocytochemical staining and patch-clamp recordings of the neurons demonstrated the cell compatibility and easy applicability of these TRP-substrates. A more precise spatial control of the outgrowth of cells should be further achieved by local switching of the TRP-coating. Therefore, microheaters comprising microelectrodes were developed for locally heating the substrate surface. For evaluation of the generated temperature profiles a thermometry method was developed and the values obtained were correlated with numerically simulated data. The thermometry method is based on easily applicable sol-gel-films containing the temperature-sensitive fluorophore Rhodamine B. It allows temperature measurements close to the surface under both dry and liquid conditions with high resolution regarding space (lower µm-range) and temperature (≤ 1°C). Numerical simulations of the temperature profiles correlated well with experimental data. On this basis geometry and material of the microelectrodes were optimized with regard to locally restricted temperature changes. Furthermore, a chip environment for cultivating the cells on the microheater chips was developed comprising a cell culture chamber and a contact board for electrically contacting the microelectrodes. The results presented in this work demonstrate for the first time the great potential of thermoresponsive cell culture substrates for a spatio-temporally controlled formation of neuronal connections in vitro. In future this could facilitate detailed studies of information processing in neuronal networks or of neuropathologies using relevant human neuronal cell models. KW - neuronale Netzwerke KW - Mikrostrukturierung KW - Neuritenwachstum KW - thermoresponsive Polymere KW - Lab-on-a-chip KW - Rhodamin B KW - Thermometrie KW - Mikroheizung KW - Oberflächentemperatur KW - Sol-Gel KW - Zelladhäsionskontrolle KW - neuronal networks KW - microstructures KW - neurite outgrowth KW - thermoresponsive polymers KW - lab-on-a-chip KW - Rhodamine B KW - thermometry KW - microheating KW - surface temperature KW - sol-gel KW - cell adhesion control Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-436196 ER - TY - JOUR A1 - Block, Benjamin D. A1 - Denfeld, Blaize A. A1 - Stockwell, Jason D. A1 - Flaim, Giovanna A1 - Grossart, Hans-Peter A1 - Knoll, Lesley B. A1 - Maier, Dominique B. A1 - North, Rebecca L. A1 - Rautio, Milla A1 - Rusak, James A. A1 - Sadro, Steve A1 - Weyhenmeyer, Gesa A. A1 - Bramburger, Andrew J. A1 - Branstrator, Donn K. A1 - Salonen, Kalevi A1 - Hampton, Stephanie E. T1 - The unique methodological challenges of winter limnology JF - Limnology and Oceanography: Methods N2 - Winter is an important season for many limnological processes, which can range from biogeochemical transformations to ecological interactions. Interest in the structure and function of lake ecosystems under ice is on the rise. Although limnologists working at polar latitudes have a long history of winter work, the required knowledge to successfully sample under winter conditions is not widely available and relatively few limnologists receive formal training. In particular, the deployment and operation of equipment in below 0 degrees C temperatures pose considerable logistical and methodological challenges, as do the safety risks of sampling during the ice-covered period. Here, we consolidate information on winter lake sampling and describe effective methods to measure physical, chemical, and biological variables in and under ice. We describe variation in snow and ice conditions and discuss implications for sampling logistics and safety. We outline commonly encountered methodological challenges and make recommendations for best practices to maximize safety and efficiency when sampling through ice or deploying instruments in ice-covered lakes. Application of such practices over a broad range of ice-covered lakes will contribute to a better understanding of the factors that regulate lakes during winter and how winter conditions affect the subsequent ice-free period. Y1 - 2018 U6 - https://doi.org/10.1002/lom3.10295 SN - 1541-5856 VL - 17 IS - 1 SP - 42 EP - 57 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Teckentrup, Lisa A1 - Kramer-Schadt, Stephanie A1 - Jeltsch, Florian T1 - The risk of ignoring fear: underestimating the effects of habitat loss and fragmentation on biodiversity JF - Landscape ecology KW - Predator-prey interactions KW - Fragmentation KW - Habitat loss KW - Landscape of fear KW - Biodiversity KW - Community Y1 - 2019 U6 - https://doi.org/10.1007/s10980-019-00922-8 SN - 0921-2973 SN - 1572-9761 VL - 34 IS - 12 SP - 2851 EP - 2868 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Song, Yu A1 - Li, Gang A1 - Nowak, Jacqueline A1 - Zhang, Xiaoqing A1 - Xu, Dongbei A1 - Yang, Xiujuan A1 - Huang, Guoqiang A1 - Liang, Wanqi A1 - Yang, Litao A1 - Wang, Canhua A1 - Bulone, Vincent A1 - Nikoloski, Zoran A1 - Hu, Jianping A1 - Persson, Staffan A1 - Zhang, Dabing T1 - The Rice Actin-Binding Protein RMD Regulates Light-Dependent Shoot Gravitropism JF - Plant physiology : an international journal devoted to physiology, biochemistry, cellular and molecular biology, biophysics and environmental biology of plants N2 - Light and gravity are two key determinants in orientating plant stems for proper growth and development. The organization and dynamics of the actin cytoskeleton are essential for cell biology and critically regulated by actin-binding proteins. However, the role of actin cytoskeleton in shoot negative gravitropism remains controversial. In this work, we report that the actin-binding protein Rice Morphology Determinant (RMD) promotes reorganization of the actin cytoskeleton in rice (Oryza sativa) shoots. The changes in actin organization are associated with the ability of the rice shoots to respond to negative gravitropism. Here, light-grown rmd mutant shoots exhibited agravitropic phenotypes. By contrast, etiolated rmd shoots displayed normal negative shoot gravitropism. Furthermore, we show that RMD maintains an actin configuration that promotes statolith mobility in gravisensing endodermal cells, and for proper auxin distribution in light-grown, but not dark-grown, shoots. RMD gene expression is diurnally controlled and directly repressed by the phytochrome-interacting factor-like protein OsPIL16. Consequently, overexpression of OsPIL16 led to gravisensing and actin patterning defects that phenocopied the rmd mutant. Our findings outline a mechanism that links light signaling and gravity perception for straight shoot growth in rice. Y1 - 2019 U6 - https://doi.org/10.1104/pp.19.00497 SN - 0032-0889 SN - 1532-2548 VL - 181 IS - 2 SP - 630 EP - 644 PB - American Society of Plant Physiologists CY - Rockville ER - TY - JOUR A1 - Heinze, Johannes A1 - Simons, Nadja K. A1 - Seibold, Sebastian A1 - Wacker, Alexander A1 - Weithoff, Guntram A1 - Gossner, Martin M. A1 - Prati, Daniel A1 - Bezemer, T. Martijn A1 - Joshi, Jasmin Radha T1 - The relative importance of plant-soil feedbacks for plant-species performance increases with decreasing intensity of herbivory JF - Oecologia N2 - Under natural conditions, aboveground herbivory and plant-soil feedbacks (PSFs) are omnipresent interactions strongly affecting individual plant performance. While recent research revealed that aboveground insect herbivory generally impacts the outcome of PSFs, no study tested to what extent the intensity of herbivory affects the outcome. This, however, is essential to estimate the contribution of PSFs to plant performance under natural conditions in the field. Here, we tested PSF effects both with and without exposure to aboveground herbivory for four common grass species in nine grasslands that formed a gradient of aboveground invertebrate herbivory. Without aboveground herbivores, PSFs for each of the four grass species were similar in each of the nine grasslands-both in direction and in magnitude. In the presence of herbivores, however, the PSFs differed from those measured under herbivory exclusion, and depended on the intensity of herbivory. At low levels of herbivory, PSFs were similar in the presence and absence of herbivores, but differed at high herbivory levels. While PSFs without herbivores remained similar along the gradient of herbivory intensity, increasing herbivory intensity mostly resulted in neutral PSFs in the presence of herbivores. This suggests that the relative importance of PSFs for plant-species performance in grassland communities decreases with increasing intensity of herbivory. Hence, PSFs might be more important for plant performance in ecosystems with low herbivore pressure than in ecosystems with large impacts of insect herbivores. KW - Plant-soil feedback KW - Herbivorous insects KW - Field conditions KW - Selective herbivory KW - Nutritional quality Y1 - 2019 U6 - https://doi.org/10.1007/s00442-019-04442-9 SN - 0029-8549 SN - 1432-1939 VL - 190 IS - 3 SP - 651 EP - 664 PB - Springer CY - New York ER - TY - JOUR A1 - Zupok, Arkadiusz A1 - Iobbi-Nivol, Chantal A1 - Mejean, Vincent A1 - Leimkühler, Silke T1 - The regulation of Moco biosynthesis and molybdoenzyme gene expression by molybdenum and iron in bacteria JF - Metallomics : integrated biometal science N2 - Bacterial molybdoenzymes are key enzymes involved in the global sulphur, nitrogen and carbon cycles. These enzymes require the insertion of the molybdenum cofactor (Moco) into their active sites and are able to catalyse a large range of redox-reactions. Escherichia coli harbours nineteen different molybdoenzymes that require a tight regulation of their synthesis according to substrate availability, oxygen availability and the cellular concentration of molybdenum and iron. The synthesis and assembly of active molybdoenzymes are regulated at the level of transcription of the structural genes and of translation in addition to the genes involved in Moco biosynthesis. The action of global transcriptional regulators like FNR, NarXL/QP, Fur and ArcA and their roles on the expression of these genes is described in detail. In this review we focus on what is known about the molybdenum- and iron-dependent regulation of molybdoenzyme and Moco biosynthesis genes in the model organism E. coli. The gene regulation in E. coli is compared to two other well studied model organisms Rhodobacter capsulatus and Shewanella oneidensis. Y1 - 2019 U6 - https://doi.org/10.1039/c9mt00186g SN - 1756-5901 SN - 1756-591X VL - 11 IS - 10 SP - 1602 EP - 1624 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Zhang, Yunming A1 - Ramming, Anna A1 - Heinke, Lisa A1 - Altschmied, Lothar A1 - Slotkin, R. Keith A1 - Becker, Jörg D. A1 - Kappel, Christian A1 - Lenhard, Michael T1 - The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA-methylation pathway in sporophyte and pollen development JF - The plant journal N2 - RNA-based processes play key roles in the regulation of eukaryotic gene expression. This includes both the processing of pre-mRNAs into mature mRNAs ready for translation and RNA-based silencing processes, such as RNA-directed DNA methylation (RdDM). Polyadenylation of pre-mRNAs is one important step in their processing and is carried out by three functionally specialized canonical nuclear poly(A) polymerases in Arabidopsis thaliana. Null mutations in one of these, termed PAPS1, result in a male gametophytic defect. Using a fluorescence-labelling strategy, we have characterized this defect in more detail using RNA and small-RNA sequencing. In addition to global defects in the expression of pollen-differentiation genes, paps1 null-mutant pollen shows a strong overaccumulation of transposable element (TE) transcripts, yet a depletion of 21- and particularly 24-nucleotide-long short interfering RNAs (siRNAs) and microRNAs (miRNAs) targeting the corresponding TEs. Double-mutant analyses support a specific functional interaction between PAPS1 and components of the RdDM pathway, as evident from strong synergistic phenotypes in mutant combinations involving paps1, but not paps2 paps4, mutations. In particular, the double-mutant of paps1 and rna-dependent rna polymerase 6 (rdr6) shows a synergistic developmental phenotype disrupting the formation of the transmitting tract in the female gynoecium. Thus, our findings in A. thaliana uncover a potentially general link between canonical poly(A) polymerases as components of mRNA processing and RdDM, reflecting an analogous interaction in fission yeast. KW - poly(A) polymerase KW - RNA-directed DNA methylation KW - pollen development KW - siRNAs KW - transposable elements KW - gynoecium development KW - Arabidopsis thaliana Y1 - 2019 U6 - https://doi.org/10.1111/tpj.14348 SN - 0960-7412 SN - 1365-313X VL - 99 IS - 4 SP - 655 EP - 672 PB - Wiley CY - Hoboken ER - TY - GEN A1 - Arnold, Patrick T1 - The origin of morphological integration and modularity in the Mammalian Neck T2 - Journal of morphology Y1 - 2019 U6 - https://doi.org/10.1002/jmor.21003 SN - 0362-2525 SN - 1097-4687 VL - 280 SP - S13 EP - S13 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Lebedeva, Lidia A1 - Groth, Detlef A1 - Hermanussen, Michael A1 - Scheffler, Christiane A1 - Godina, Elena T1 - The network effects on conscripts' height in the central provinces of Russian empire in the middle of XIX century BT - at the beginning of XX century JF - Journal of biological and clinical anthropology : Anthropologischer Anzeiger ; Mitteilungsorgan der Gesellschaft für Anthropologie N2 - Background: We investigated average body height in the central provinces of the Russian empire in the middle of XIX century in view of the concept of "community effects on height". We analyzed body height correlations between neighboring districts at this time. We added information about secular changes in body height during the 19th century of this territory. Material and methods: The study used height data of conscripts, which were born in the years 1853-1863, and age 21 at the time of measurement. The territory of seven provinces was considered as a network with 105 nodes, each node representing one district with information on average male body height. In order to define neighboring districts three different approaches were used: based on the "common borders" method, based on Euclidean distances (from 60 to 120 km), based on real road connections. Results: Small but significant correlation coefficients were observed between 1st order districts in the network based on Euclidean distance of 100 km (r = 0.256, p-value = 0.006) and based on "the common borders" approach (r = 0.25, p-value = 0.02). Wherein no significant correlations were observed in the network based on road connections and between second order neighbors regardless of the method. Conclusion: Height correlation coefficients between 1st order neighboring districts observed in the Russian districts were very similar to values observed in the Polish study (r = 0.24). The considered Russian territory and the territory of Poland have a lot in common. They consist of both plains without mountains. In contradistinction to Poland the transport infrastructure in Russia was weakly developed in the middle of XIX century. In addition, the mobility of people was limited by serfdom. In this context the absent of significant correlation of second order neighbors can be explained by low population density and lack of migration and communication between the districts. KW - body height KW - correlation KW - conscripts KW - community effect on height KW - Russian empire Y1 - 2019 U6 - https://doi.org/10.1127/anthranz/2019/0984 SN - 0003-5548 VL - 76 IS - 5 SP - 371 EP - 377 PB - Schweizerbart CY - Stuttgart ER - TY - JOUR A1 - Batista, Rita A. A1 - Moreno-Romero, Jordi A1 - Qiu, Yichun A1 - van Boven, Joram A1 - Santos-Gonzalez, Juan A1 - Figueiredo, Duarte Dionisio A1 - Köhler, Claudia T1 - The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons JF - eLife N2 - MADS-box transcription factors (TFs) are ubiquitous in eukaryotic organisms and play major roles during plant development. Nevertheless, their function in seed development remains largely unknown. Here, we show that the imprinted Arabidopsis thaliana MADS-box TF PHERES1 (PHE1) is a master regulator of paternally expressed imprinted genes, as well as of non-imprinted key regulators of endosperm development. PHE1 binding sites show distinct epigenetic modifications on maternal and paternal alleles, correlating with parental-specific transcriptional activity. Importantly, we show that the CArG-box-like DNA-binding motifs that are bound by PHE1 have been distributed by RC/Helitron transposable elements. Our data provide an example of the molecular domestication of these elements which, by distributing PHE1 binding sites throughout the genome, have facilitated the recruitment of crucial endosperm regulators into a single transcriptional network. Y1 - 2019 U6 - https://doi.org/10.7554/eLife.50541 SN - 2050-084X VL - 8 PB - eLife Sciences Publications CY - Cambridge ER - TY - THES A1 - Kolk, Jens T1 - The long-term legacy of historical land cover changes T1 - Die Langzeitfolgen historischer Landbedeckungsveränderungen BT - patterns and dynamics in herb-layer species richness in deciduous forests of the Prignitz region (NE Germany) BT - Muster und Dynamik der Artenvielfalt von Waldpflanzengemeinschaften in Laubwäldern der Prignitz (Nordostdeutschland) N2 - Over the last years there is an increasing awareness that historical land cover changes and associated land use legacies may be important drivers for present-day species richness and biodiversity due to time-delayed extinctions or colonizations in response to historical environmental changes. Historically altered habitat patches may therefore exhibit an extinction debt or colonization credit and can be expected to lose or gain species in the future. However, extinction debts and colonization credits are difficult to detect and their actual magnitudes or payments have rarely been quantified because species richness patterns and dynamics are also shaped by recent environmental conditions and recent environmental changes. In this thesis we aimed to determine patterns of herb-layer species richness and recent species richness dynamics of forest herb layer plants and link those patterns and dynamics to historical land cover changes and associated land use legacies. The study was conducted in the Prignitz, NE-Germany, where the forest distribution remained stable for the last ca. 100 years but where a) the deciduous forest area had declined by more than 90 per cent (leaving only remnants of "ancient forests"), b) small new forests had been established on former agricultural land ("post-agricultural forests"). Here, we analyzed the relative importance of land use history and associated historical land cover changes for herb layer species richness compared to recent environmental factors and determined magnitudes of extinction debt and colonization credit and their payment in ancient and post-agricultural forests, respectively. We showed that present-day species richness patterns were still shaped by historical land cover changes that ranged back to more than a century. Although recent environmental conditions were largely comparable we found significantly more forest specialists, species with short-distance dispersal capabilities and clonals in ancient forests than in post-agricultural forests. Those species richness differences were largely contingent to a colonization credit in post-agricultural forests that ranged up to 9 species (average 4.7), while the extinction debt in ancient forests had almost completely been paid. Environmental legacies from historical agricultural land use played a minor role for species richness differences. Instead, patch connectivity was most important. Species richness in ancient forests was still dependent on historical connectivity, indicating a last glimpse of an extinction debt, and the colonization credit was highest in isolated post-agricultural forests. In post-agricultural forests that were better connected or directly adjacent to ancient forest patches the colonization credit was way smaller and we were able to verify a gradual payment of the colonization credit from 2.7 species to 1.5 species over the last six decades. N2 - In den vergangenen Jahren reift immer mehr die Erkenntnis, dass historische Landnutzungsveränderungen und deren Folgewirkungen einen wichtigen Einfluss auf die heutige Artenvielfalt und Biodiversität haben können. In Habitaten, deren Landnutzung und Fläche sich in historischer Zeit verändert hat kann aufgrund von verzögerten Aussterbe- und Einwanderungsprozessen eine erhöhte oder verringerte Artenvielfalt vorliegen, die nicht den heutigen Umweltbedingungen entspricht. Es liegen Aussterbeschulden oder Einwanderungs- bzw. Kolonisierungskredite vor, welcher über die Zeit mit Artverlusten oder Zugewinnen von Arten bezahlt werden. Aussterbeschulden oder Einwanderungskredite und deren Bezahlung sind schwierig zu ermitteln, da einerseits Informationen zu historischen Landnutzungsveränderungen oft fehlen und andererseits auch heutige Umweltfaktoren einen wichtigen Einfluss auf die Artenvielfalt haben. Das Ziel dieser Arbeit war es die heutigen Muster der Artenvielfalt von Waldbodenpflanzen in Laub- und Mischwäldern und deren Veränderungen über die letzten 60 Jahre zu ermitteln und diese Muster im Hinblick auf historische Landnutzungsveränderungen zu untersuchen. Das Studiengebiet umfasst große Teile der Prignitz (Brandenburg und angrenzende Teile von Sachsen-Anhalt), ein Gebiet, dessen Waldanteil sich in den letzten 100 Jahren kaum verändert hat, in dem sich jedoch seit dem Ende des 19ten Jahrhunderts der Anteil historisch alter Wälder (ohne historische nachgewiesene agrarliche Nutzung) um mehr als 90% reduziert hat, während an anderer Stelle wenige neue Wälder auf vorigen Agrarflächen etabliert wurden. Im Rahmen dieser Studie wurde zunächst die Artenvielfalt und deren aktuelle Veränderung in historisch-alten Wäldern und neu etablierten Wäldern untersucht und verglichen. Um den Einfluss von historischen Landnutzungsveränderungen auf die Artenvielfalt zu ermittlen, wurde die historische und heutige Vernetzung der Waldflächen analysiert, die Umweltbedingungen in historisch-alten Wäldern und neu etablierten Wäldern verglichen und der Umfang und die Bezahlung der Aussterbeschulden und der Kolonisierungskredite ermittelt. Die Arbeit zeigt, dass historische Landnutzungsveränderungen die heutige Artenvielfalt noch immer beeinflussen. Obwohl die heutigen Umweltbedingungen in historisch-alten und neu etablierten Wäldern vergleichbar waren, war die Gesamtartenzahl in historisch-alten Wäldern signifikant höher und in diesen Wäldern wurden insbesondere mehr Waldspezialisten und sich nur über kurze Enfernung ausbreitende Pflanzenarten gefunden. Die Unterschiede in den Artenzahlen sind vor allem auf einen Kolonisierungskredit in neu etablierten Wäldern zurückzuführen, während die Aussterbeschulden in historisch-alten Wäldern weitgehend bezahlt wurden. Der Kolonisierungskredits war am höchsten in isoliert gelegenen Waldflächen und belief sich auf bis zu 9 Arten (im Mittel 4,7). Der Kolonisierungskredit in besser vernetzten und in direkt an historisch-alten Wäldern angrenzenden Flächen war deutlich geringer. In diesen Wäldern konnte eine Verringerung des Kolonisierungskredites von im Mittel 2,7 zu 1,5 Arten über die letzten sechs Jahrzehnte nachgewiesen werden. KW - ecology KW - plant science KW - extinction debt KW - colonization credit KW - species richness KW - land use history KW - Ökologie KW - Pflanzenwissenschaften KW - Botanik KW - Aussterbeschuld KW - Einwanderungskredit KW - Biodiversität KW - Landnutzungshistorie Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-439398 ER - TY - JOUR A1 - Pennekamp, Frank A1 - Iles, Alison C. A1 - Garland, Joshua A1 - Brennan, Georgina A1 - Brose, Ulrich A1 - Gaedke, Ursula A1 - Jacob, Ute A1 - Kratina, Pavel A1 - Matthews, Blake A1 - Munch, Stephan A1 - Novak, Mark A1 - Palamara, Gian Marco A1 - Rall, Bjorn C. A1 - Rosenbaum, Benjamin A1 - Tabi, Andrea A1 - Ward, Colette A1 - Williams, Richard A1 - Ye, Hao A1 - Petchey, Owen L. T1 - The intrinsic predictability of ecological time series and its potential to guide forecasting JF - Ecological monographs : a publication of the Ecological Society of America. KW - empirical dynamic modelling KW - forecasting KW - information theory KW - permutation entropy KW - population dynamics KW - time series analysis Y1 - 2019 U6 - https://doi.org/10.1002/ecm.1359 SN - 0012-9615 SN - 1557-7015 VL - 89 IS - 2 PB - Wiley CY - Hoboken ER - TY - GEN A1 - Hermanussen, Michael A1 - Bogin, Barry A1 - Scheffler, Christiane T1 - The impact of social identity and social dominance on the regulation of human growth: A viewpoint T2 - Acta paediatrica : nurturing the child Y1 - 2019 U6 - https://doi.org/10.1111/apa.14970 SN - 0803-5253 SN - 1651-2227 VL - 108 IS - 12 SP - 2132 EP - 2134 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Cook, Katherine V. A1 - Li, Chuang A1 - Cai, Haiyuan A1 - Krumholz, Lee R. A1 - Hambright, K. David A1 - Paerl, Hans W. A1 - Steffen, Morgan M. A1 - Wilson, Alan E. A1 - Burford, Michele A. A1 - Grossart, Hans-Peter A1 - Hamilton, David P. A1 - Jiang, Helong A1 - Sukenik, Assaf A1 - Latour, Delphine A1 - Meyer, Elisabeth I. A1 - Padisak, Judit A1 - Qin, Boqiang A1 - Zamor, Richard M. A1 - Zhu, Guangwei T1 - The global Microcystis interactome JF - Limnology and oceanography N2 - Bacteria play key roles in the function and diversity of aquatic systems, but aside from study of specific bloom systems, little is known about the diversity or biogeography of bacteria associated with harmful cyanobacterial blooms (cyanoHABs). CyanoHAB species are known to shape bacterial community composition and to rely on functions provided by the associated bacteria, leading to the hypothesized cyanoHAB interactome, a coevolved community of synergistic and interacting bacteria species, each necessary for the success of the others. Here, we surveyed the microbiome associated with Microcystis aeruginosa during blooms in 12 lakes spanning four continents as an initial test of the hypothesized Microcystis interactome. We predicted that microbiome composition and functional potential would be similar across blooms globally. Our results, as revealed by 16S rRNA sequence similarity, indicate that M. aeruginosa is cosmopolitan in lakes across a 280 degrees longitudinal and 90 degrees latitudinal gradient. The microbiome communities were represented by a wide range of operational taxonomic units and relative abundances. Highly abundant taxa were more related and shared across most sites and did not vary with geographic distance, thus, like Microcystis, revealing no evidence for dispersal limitation. High phylogenetic relatedness, both within and across lakes, indicates that microbiome bacteria with similar functional potential were associated with all blooms. While Microcystis and the microbiome bacteria shared many genes, whole-community metagenomic analysis revealed a suite of biochemical pathways that could be considered complementary. Our results demonstrate a high degree of similarity across global Microcystis blooms, thereby providing initial support for the hypothesized Microcystis interactome. Y1 - 2019 U6 - https://doi.org/10.1002/lno.11361 SN - 0024-3590 SN - 1939-5590 VL - 65 SP - S194 EP - S207 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Tanabe, Tomohisa Sebastian A1 - Leimkühler, Silke A1 - Dahl, Christiane ED - Poole, RK T1 - The functional diversity of the prokaryotic sulfur carrier protein TusA JF - Advances in microbial physiology N2 - Persulfide groups participate in a wide array of biochemical pathways and are chemically very versatile. The TusA protein has been identified as a central element supplying and transferring sulfur as persulfide to a number of important biosynthetic pathways, like molybdenum cofactor biosynthesis or thiomodifications in nucleosides of tRNAs. In recent years, it has furthermore become obvious that this protein is indispensable for the oxidation of sulfur compounds in the cytoplasm. Phylogenetic analyses revealed that different TusA protein variants exists in certain organisms, that have evolved to pursue specific roles in cellular pathways. The specific TusA-like proteins thereby cannot replace each other in their specific roles and are rather specific to one sulfur transfer pathway or shared between two pathways. While certain bacteria like Escherichia coli contain several copies of TusA-like proteins, in other bacteria like Allochromatium vinosum a single copy of TusA is present with an essential role for this organism. Here, we give an overview on the multiple roles of the various TusA-like proteins in sulfur transfer pathways in different organisms to shed light on the remaining mysteries of this versatile protein. Y1 - 2019 SN - 978-0-12-817715-0 SN - 978-0-12-817714-3 U6 - https://doi.org/10.1016/bs.ampbs.2019.07.004 SN - 0065-2911 VL - 75 SP - 233 EP - 277 PB - Elsevier Acad. Press CY - Amsterdam ER - TY - JOUR A1 - Kettner, Marie Therese A1 - Oberbeckmann, Sonja A1 - Labrenz, Matthias A1 - Grossart, Hans-Peter T1 - The Eukaryotic Life on Microplastics in Brackish Ecosystems JF - Frontiers in Microbiology N2 - Microplastics (MP) constitute a widespread contaminant all over the globe. Rivers and wastewater treatment plants (WWTP) transport annually several million tons of MP into freshwaters, estuaries and oceans, where they provide increasing artificial surfaces for microbial colonization. As knowledge on MP-attached communities is insufficient for brackish ecosystems, we conducted exposure experiments in the coastal Baltic Sea, an in-flowing river and a WWTP within the drainage basin. While reporting on prokaryotic and fungal communities from the same set-up previously, we focus here on the entire eukaryotic communities. Using high-throughput 18S rRNA gene sequencing, we analyzed the eukaryotes colonizing on two types of MP, polyethylene and polystyrene, and compared them to the ones in the surrounding water and on a natural surface (wood). More than 500 different taxa across almost all kingdoms of the eukaryotic tree of life were identified on MP, dominated by Alveolata, Metazoa, and Chloroplastida. The eukaryotic community composition on MP was significantly distinct from wood and the surrounding water, with overall lower diversity and the potentially harmful dinoflagellate Pfiesteria being enriched on MP. Co-occurrence networks, which include prokaryotic and eukaryotic taxa, hint at possibilities for dynamic microbial interactions on MP. This first report on total eukaryotic communities on MP in brackish environments highlights the complexity of MP-associated biofilms, potentially leading to altered microbial activities and hence changes in ecosystem functions. KW - microeukaryotes KW - plastic-associated biofilms KW - Baltic Sea KW - polyethylene KW - polystyrene KW - diversity profiles KW - network analysis KW - next-generation sequencing Y1 - 2019 U6 - https://doi.org/10.3389/fmicb.2019.00538 SN - 1664-302X VL - 10 PB - Frontiers Media CY - Lausanne ER - TY - GEN A1 - Kettner, Marie Therese A1 - Oberbeckmann, Sonja A1 - Labrenz, Matthias A1 - Grossart, Hans-Peter T1 - The Eukaryotic Life on Microplastics in Brackish Ecosystems T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Microplastics (MP) constitute a widespread contaminant all over the globe. Rivers and wastewater treatment plants (WWTP) transport annually several million tons of MP into freshwaters, estuaries and oceans, where they provide increasing artificial surfaces for microbial colonization. As knowledge on MP-attached communities is insufficient for brackish ecosystems, we conducted exposure experiments in the coastal Baltic Sea, an in-flowing river and a WWTP within the drainage basin. While reporting on prokaryotic and fungal communities from the same set-up previously, we focus here on the entire eukaryotic communities. Using high-throughput 18S rRNA gene sequencing, we analyzed the eukaryotes colonizing on two types of MP, polyethylene and polystyrene, and compared them to the ones in the surrounding water and on a natural surface (wood). More than 500 different taxa across almost all kingdoms of the eukaryotic tree of life were identified on MP, dominated by Alveolata, Metazoa, and Chloroplastida. The eukaryotic community composition on MP was significantly distinct from wood and the surrounding water, with overall lower diversity and the potentially harmful dinoflagellate Pfiesteria being enriched on MP. Co-occurrence networks, which include prokaryotic and eukaryotic taxa, hint at possibilities for dynamic microbial interactions on MP. This first report on total eukaryotic communities on MP in brackish environments highlights the complexity of MP-associated biofilms, potentially leading to altered microbial activities and hence changes in ecosystem functions. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 741 KW - microeukaryotes KW - plastic-associated biofilms KW - Baltic Sea KW - polyethylene KW - polystyrene KW - diversity profiles KW - network analysis KW - next-generation sequencing Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-434996 SN - 1866-8372 IS - 741 ER - TY - GEN A1 - Ceulemans, Ruben A1 - Gaedke, Ursula A1 - Klauschies, Toni A1 - Guill, Christian T1 - The effects of functional diversity on biomass production, variability, and resilience of ecosystem functions in a tritrophic system T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Diverse communities can adjust their trait composition to altered environmental conditions, which may strongly influence their dynamics. Previous studies of trait-based models mainly considered only one or two trophic levels, whereas most natural system are at least tritrophic. Therefore, we investigated how the addition of trait variation to each trophic level influences population and community dynamics in a tritrophic model. Examining the phase relationships between species of adjacent trophic levels informs about the strength of top-down or bottom-up control in non-steadystate situations. Phase relationships within a trophic level highlight compensatory dynamical patterns between functionally different species, which are responsible for dampening the community temporal variability. Furthermore, even without trait variation, our tritrophic model always exhibits regions with two alternative states with either weak or strong nutrient exploitation, and correspondingly low or high biomass production at the top level. However, adding trait variation increased the basin of attraction of the high-production state, and decreased the likelihood of a critical transition from the high- to the lowproduction state with no apparent early warning signals. Hence, our study shows that trait variation enhances resource use efficiency, production, stability, and resilience of entire food webs. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 744 KW - early-warning signals KW - top-down control KW - community ecology KW - regime shifts KW - food webs KW - compensatory dynamics KW - consumer diversity KW - metabolic theory KW - rapid evolution KW - stable states Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-435439 SN - 1866-8372 IS - 744 ER - TY - JOUR A1 - Ceulemans, Ruben A1 - Gaedke, Ursula A1 - Klauschies, Toni A1 - Guill, Christian T1 - The effects of functional diversity on biomass production, variability, and resilience of ecosystem functions in a tritrophic system JF - Scientific Reports N2 - Diverse communities can adjust their trait composition to altered environmental conditions, which may strongly influence their dynamics. Previous studies of trait-based models mainly considered only one or two trophic levels, whereas most natural system are at least tritrophic. Therefore, we investigated how the addition of trait variation to each trophic level influences population and community dynamics in a tritrophic model. Examining the phase relationships between species of adjacent trophic levels informs about the strength of top-down or bottom-up control in non-steadystate situations. Phase relationships within a trophic level highlight compensatory dynamical patterns between functionally different species, which are responsible for dampening the community temporal variability. Furthermore, even without trait variation, our tritrophic model always exhibits regions with two alternative states with either weak or strong nutrient exploitation, and correspondingly low or high biomass production at the top level. However, adding trait variation increased the basin of attraction of the high-production state, and decreased the likelihood of a critical transition from the high- to the lowproduction state with no apparent early warning signals. Hence, our study shows that trait variation enhances resource use efficiency, production, stability, and resilience of entire food webs. KW - early-warning signals KW - top-down control KW - community ecology KW - regime shifts KW - food webs KW - compensatory dynamics KW - consumer diversity KW - metabolic theory KW - rapid evolution KW - stable states Y1 - 2019 U6 - https://doi.org/10.1038/s41598-019-43974-1 SN - 2045-2322 VL - 9 PB - Macmillan Publishers Limited CY - London ER - TY - JOUR A1 - Middeldorp, Christel M. A1 - Mahajan, Anubha A1 - Horikoshi, Momoko A1 - Robertson, Neil R. A1 - Beaumont, Robin N. A1 - Bradfield, Jonathan P. A1 - Bustamante, Mariona A1 - Cousminer, Diana L. A1 - Day, Felix R. A1 - De Silva, N. Maneka A1 - Guxens, Monica A1 - Mook-Kanamori, Dennis O. A1 - St Pourcain, Beate A1 - Warrington, Nicole M. A1 - Adair, Linda S. A1 - Ahlqvist, Emma A1 - Ahluwalia, Tarunveer Singh A1 - Almgren, Peter A1 - Ang, Wei A1 - Atalay, Mustafa A1 - Auvinen, Juha A1 - Bartels, Meike A1 - Beckmann, Jacques S. A1 - Bilbao, Jose Ramon A1 - Bond, Tom A1 - Borja, Judith B. A1 - Cavadino, Alana A1 - Charoen, Pimphen A1 - Chen, Zhanghua A1 - Coin, Lachlan A1 - Cooper, Cyrus A1 - Curtin, John A. A1 - Custovic, Adnan A1 - Das, Shikta A1 - Davies, Gareth E. A1 - Dedoussis, George V. A1 - Duijts, Liesbeth A1 - Eastwood, Peter R. A1 - Eliasen, Anders U. A1 - Elliott, Paul A1 - Eriksson, Johan G. A1 - Estivill, Xavier A1 - Fadista, Joao A1 - Fedko, Iryna O. A1 - Frayling, Timothy M. A1 - Gaillard, Romy A1 - Gauderman, W. James A1 - Geller, Frank A1 - Gilliland, Frank A1 - Gilsanz, Vincente A1 - Granell, Raquel A1 - Grarup, Niels A1 - Groop, Leif A1 - Hadley, Dexter A1 - Hakonarson, Hakon A1 - Hansen, Torben A1 - Hartman, Catharina A. A1 - Hattersley, Andrew T. A1 - Hayes, M. Geoffrey A1 - Hebebrand, Johannes A1 - Heinrich, Joachim A1 - Helgeland, Oyvind A1 - Henders, Anjali K. A1 - Henderson, John A1 - Henriksen, Tine B. A1 - Hirschhorn, Joel N. A1 - Hivert, Marie-France A1 - Hocher, Berthold A1 - Holloway, John W. A1 - Holt, Patrick A1 - Hottenga, Jouke-Jan A1 - Hypponen, Elina A1 - Iniguez, Carmen A1 - Johansson, Stefan A1 - Jugessur, Astanand A1 - Kahonen, Mika A1 - Kalkwarf, Heidi J. A1 - Kaprio, Jaakko A1 - Karhunen, Ville A1 - Kemp, John P. A1 - Kerkhof, Marjan A1 - Koppelman, Gerard H. A1 - Korner, Antje A1 - Kotecha, Sailesh A1 - Kreiner-Moller, Eskil A1 - Kulohoma, Benard A1 - Kumar, Ashish A1 - Kutalik, Zoltan A1 - Lahti, Jari A1 - Lappe, Joan M. A1 - Larsson, Henrik A1 - Lehtimaki, Terho A1 - Lewin, Alexandra M. A1 - Li, Jin A1 - Lichtenstein, Paul A1 - Lindgren, Cecilia M. A1 - Lindi, Virpi A1 - Linneberg, Allan A1 - Liu, Xueping A1 - Liu, Jun A1 - Lowe, William L. A1 - Lundstrom, Sebastian A1 - Lyytikainen, Leo-Pekka A1 - Ma, Ronald C. W. A1 - Mace, Aurelien A1 - Magi, Reedik A1 - Magnus, Per A1 - Mamun, Abdullah A. A1 - Mannikko, Minna A1 - Martin, Nicholas G. A1 - Mbarek, Hamdi A1 - McCarthy, Nina S. A1 - Medland, Sarah E. A1 - Melbye, Mads A1 - Melen, Erik A1 - Mohlke, Karen L. A1 - Monnereau, Claire A1 - Morgen, Camilla S. A1 - Morris, Andrew P. A1 - Murray, Jeffrey C. A1 - Myhre, Ronny A1 - Najman, Jackob M. A1 - Nivard, Michel G. A1 - Nohr, Ellen A. A1 - Nolte, Ilja M. A1 - Ntalla, Ioanna A1 - Oberfield, Sharon E. A1 - Oken, Emily A1 - Oldehinkel, Albertine J. A1 - Pahkala, Katja A1 - Palviainen, Teemu A1 - Panoutsopoulou, Kalliope A1 - Pedersen, Oluf A1 - Pennell, Craig E. A1 - Pershagen, Goran A1 - Pitkanen, Niina A1 - Plomin, Robert A1 - Power, Christine A1 - Prasad, Rashmi B. A1 - Prokopenko, Inga A1 - Pulkkinen, Lea A1 - Raikkonen, Katri A1 - Raitakari, Olli T. A1 - Reynolds, Rebecca M. A1 - Richmond, Rebecca C. A1 - Rivadeneira, Fernando A1 - Rodriguez, Alina A1 - Rose, Richard J. A1 - Salem, Rany A1 - Santa-Marina, Loreto A1 - Saw, Seang-Mei A1 - Schnurr, Theresia M. A1 - Scott, James G. A1 - Selzam, Saskia A1 - Shepherd, John A. A1 - Simpson, Angela A1 - Skotte, Line A1 - Sleiman, Patrick M. A. A1 - Snieder, Harold A1 - Sorensen, Thorkild I. A. A1 - Standl, Marie A1 - Steegers, Eric A. P. A1 - Strachan, David P. A1 - Straker, Leon A1 - Strandberg, Timo A1 - Taylor, Michelle A1 - Teo, Yik-Ying A1 - Thiering, Elisabeth A1 - Torrent, Maties A1 - Tyrrell, Jessica A1 - Uitterlinden, Andre G. A1 - van Beijsterveldt, Toos A1 - van der Most, Peter J. A1 - van Duijn, Cornelia M. A1 - Viikari, Jorma A1 - Vilor-Tejedor, Natalia A1 - Vogelezang, Suzanne A1 - Vonk, Judith M. A1 - Vrijkotte, Tanja G. M. A1 - Vuoksimaa, Eero A1 - Wang, Carol A. A1 - Watkins, William J. A1 - Wichmann, H-Erich A1 - Willemsen, Gonneke A1 - Williams, Gail M. A1 - Wilson, James F. A1 - Wray, Naomi R. A1 - Xu, Shujing A1 - Xu, Cheng-Jian A1 - Yaghootkar, Hanieh A1 - Yi, Lu A1 - Zafarmand, Mohammad Hadi A1 - Zeggini, Eleftheria A1 - Zemel, Babette S. A1 - Hinney, Anke A1 - Lakka, Timo A. A1 - Whitehouse, Andrew J. O. A1 - Sunyer, Jordi A1 - Widen, Elisabeth E. A1 - Feenstra, Bjarke A1 - Sebert, Sylvain A1 - Jacobsson, Bo A1 - Njolstad, Pal R. A1 - Stoltenberg, Camilla A1 - Smith, George Davey A1 - Lawlor, Debbie A. A1 - Paternoster, Lavinia A1 - Timpson, Nicholas J. A1 - Ong, Ken K. A1 - Bisgaard, Hans A1 - Bonnelykke, Klaus A1 - Jaddoe, Vincent W. V. A1 - Tiemeier, Henning A1 - Jarvelin, Marjo-Riitta A1 - Evans, David M. A1 - Perry, John R. B. A1 - Grant, Struan F. A. A1 - Boomsma, Dorret I. A1 - Freathy, Rachel M. A1 - McCarthy, Mark I. A1 - Felix, Janine F. T1 - The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia BT - design, results and future prospects JF - European journal of epidemiology N2 - The impact of many unfavorable childhood traits or diseases, such as low birth weight and mental disorders, is not limited to childhood and adolescence, as they are also associated with poor outcomes in adulthood, such as cardiovascular disease. Insight into the genetic etiology of childhood and adolescent traits and disorders may therefore provide new perspectives, not only on how to improve wellbeing during childhood, but also how to prevent later adverse outcomes. To achieve the sample sizes required for genetic research, the Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia were established. The majority of the participating cohorts are longitudinal population-based samples, but other cohorts with data on early childhood phenotypes are also involved. Cohorts often have a broad focus and collect(ed) data on various somatic and psychiatric traits as well as environmental factors. Genetic variants have been successfully identified for multiple traits, for example, birth weight, atopic dermatitis, childhood BMI, allergic sensitization, and pubertal growth. Furthermore, the results have shown that genetic factors also partly underlie the association with adult traits. As sample sizes are still increasing, it is expected that future analyses will identify additional variants. This, in combination with the development of innovative statistical methods, will provide detailed insight on the mechanisms underlying the transition from childhood to adult disorders. Both consortia welcome new collaborations. Policies and contact details are available from the corresponding authors of this manuscript and/or the consortium websites. KW - Genetics KW - Consortium KW - Childhood traits and disorders KW - Longitudinal Y1 - 2019 U6 - https://doi.org/10.1007/s10654-019-00502-9 SN - 0393-2990 SN - 1573-7284 VL - 34 IS - 3 SP - 279 EP - 300 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Radchuk, Viktoriia A1 - De Laender, Frederik A1 - Cabral, Juliano Sarmento A1 - Boulangeat, Isabelle A1 - Crawford, Michael Scott A1 - Bohn, Friedrich A1 - De Raedt, Jonathan A1 - Scherer, Cedric A1 - Svenning, Jens-Christian A1 - Thonicke, Kirsten A1 - Schurr, Frank M. A1 - Grimm, Volker A1 - Kramer-Schadt, Stephanie T1 - The dimensionality of stability depends on disturbance type JF - Ecology letters N2 - Ecosystems respond in various ways to disturbances. Quantifying ecological stability therefore requires inspecting multiple stability properties, such as resistance, recovery, persistence and invariability. Correlations among these properties can reduce the dimensionality of stability, simplifying the study of environmental effects on ecosystems. A key question is how the kind of disturbance affects these correlations. We here investigated the effect of three disturbance types (random, species-specific, local) applied at four intensity levels, on the dimensionality of stability at the population and community level. We used previously parameterized models that represent five natural communities, varying in species richness and the number of trophic levels. We found that disturbance type but not intensity affected the dimensionality of stability and only at the population level. The dimensionality of stability also varied greatly among species and communities. Therefore, studying stability cannot be simplified to using a single metric and multi-dimensional assessments are still to be recommended. KW - Community model KW - disturbance intensity KW - disturbance type KW - extinction KW - individual-based model KW - invariability KW - persistence KW - recovery KW - resistance Y1 - 2019 U6 - https://doi.org/10.1111/ele.13226 SN - 1461-023X SN - 1461-0248 VL - 22 IS - 4 SP - 674 EP - 684 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Masigol, Hossein A1 - Khodaparast, Seyed Akbar A1 - Woodhouse, Jason Nicholas A1 - Rojas Jiménez, Keilor A1 - Fonvielle, Jeremy Andre A1 - Rezakhani, Forough A1 - Mostowfizadeh-Ghalamfarsa, Reza A1 - Neubauer, Darshan A1 - Goldhammer, Tobias A1 - Grossart, Hans-Peter T1 - The contrasting roles of aquatic fungi and oomycetes in the degradation and transformation of polymeric organic matter JF - Limnology and oceanography N2 - Studies on the ecological role of fungi and, to a lesser extent, oomycetes, are receiving increasing attention, mainly due to their participation in the cycling of organic matter in aquatic ecosystems. To unravel their importance in humification processes, we isolated several strains of fungi and oomycetes from Anzali lagoon, Iran. We then performed taxonomic characterization by morphological and molecular methods, analyzed the ability to degrade several polymeric substrates, performed metabolic fingerprinting with Ecoplates, and determined the degradation of humic substances (HS) using liquid chromatography-organic carbon detection. Our analyses highlighted the capacity of aquatic fungi to better degrade a plethora of organic molecules, including complex polymers. Specifically, we were able to demonstrate not only the utilization of these complex polymers, but also the role of fungi in the production of HS. In contrast, oomycetes, despite some morphological and physiological similarities with aquatic fungi, exhibited a propensity toward opportunism, quickly benefitting from the availability of small organic molecules, while exhibiting sensitivity toward more complex polymers. Despite their contrasting roles, our study highlights the importance of both oomycetes and fungi in aquatic organic matter transformation and cycling with potential implications for the global carbon cycle. Y1 - 2019 SN - 0024-3590 SN - 1939-5590 VL - 64 IS - 6 SP - 2662 EP - 2678 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - De Cahsan, Binia A1 - Westbury, Michael V. A1 - Drews, Hauke A1 - Tiedemann, Ralph T1 - The complete mitochondrial genome of a European fire-bellied toad (Bombina bombina) from Germany JF - Mitochondrial DNA Part B N2 - The European fire-bellied toad, Bombina bombina, is a small aquatic toad belonging to the family Bombinatoridae. The species is native to the lowlands of Central and Eastern Europe, where population numbers have been in decline in recent past decades. Here, we present the first complete mitochondrial genome of the endangered European fire-bellied toad from Northern Germany recovered using iterative mapping. Phylogenetic analyses including other representatives of the Bombinatoridae placed our German specimen as sister to a Polish B. bombina sequence with high support. This finding is congruent with the postulated Pleistocene history of the species. Our complete mitochondrial genome represents an important resource for further population analysis of the European fire-bellied toad, especially those found within Germany. KW - Bombina bombina KW - Fire-bellied toad KW - mitogenome KW - conservation genetics KW - population delimitation Y1 - 2019 U6 - https://doi.org/10.1080/23802359.2018.1547143 SN - 2380-2359 VL - 4 IS - 1 SP - 498 EP - 500 PB - Taylor & Francis Group CY - London ER - TY - GEN A1 - De Cahsan, Binia A1 - Westbury, Michael V. A1 - Drews, Hauke A1 - Tiedemann, Ralph T1 - The complete mitochondrial genome of a European fire-bellied toad (Bombina bombina) from Germany T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - The European fire-bellied toad, Bombina bombina, is a small aquatic toad belonging to the family Bombinatoridae. The species is native to the lowlands of Central and Eastern Europe, where population numbers have been in decline in recent past decades. Here, we present the first complete mitochondrial genome of the endangered European fire-bellied toad from Northern Germany recovered using iterative mapping. Phylogenetic analyses including other representatives of the Bombinatoridae placed our German specimen as sister to a Polish B. bombina sequence with high support. This finding is congruent with the postulated Pleistocene history of the species. Our complete mitochondrial genome represents an important resource for further population analysis of the European fire-bellied toad, especially those found within Germany. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 532 KW - Bombina bombina KW - Fire-bellied toad KW - mitogenome KW - conservation genetics KW - population delimitation Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-423222 SN - 1866-8372 IS - 532 ER - TY - JOUR A1 - Melin, Johanna Stina Elisabet A1 - Hartung, Niklas A1 - Parra-Guillen, Zinnia Patricia A1 - Whitaker, Martin J. A1 - Ross, Richard J. A1 - Kloft, Charlotte T1 - The circadian rhythm of corticosteroid-binding globulin has little impact on cortisol exposure after hydrocortisone dosing JF - Clinical endocrinology N2 - Context Optimization of hydrocortisone replacement therapy is important to prevent under- and over dosing. Hydrocortisone pharmacokinetics is complex as circulating cortisol is protein bound mainly to corticosteroid-binding globulin (CBG) that has a circadian rhythm. Objective A detailed analysis of the CBG circadian rhythm and its impact on cortisol exposure after hydrocortisone administration. Design and Methods CBG was measured over 24 hours in 14 healthy individuals and, employing a modelling and simulation approach using a semi-mechanistic hydrocortisone pharmacokinetic model, we evaluated the impact on cortisol exposure (area under concentration-time curve and maximum concentration of total cortisol) of hydrocortisone administration at different clock times and of the changing CBG concentrations. Results The circadian rhythm of CBG was well described with two cosine terms added to the baseline of CBG: baseline CBG was 21.8 mu g/mL and interindividual variability 11.9%; the amplitude for the 24 and 12 hours cosine functions were relatively small (24 hours: 5.53%, 12 hours: 2.87%) and highest and lowest CBG were measured at 18:00 and 02:00, respectively. In simulations, the lowest cortisol exposure was observed after administration of hydrocortisone at 23:00-02:00, whereas the highest was observed at 15:00-18:00. The differences between the highest and lowest exposure were minor (<= 12.2%), also regarding the free cortisol concentration and free fraction (<= 11.7%). Conclusions Corticosteroid-binding globulin has a circadian rhythm but the difference in cortisol exposure is <= 12.2% between times of highest and lowest CBG concentrations; therefore, hydrocortisone dose adjustment based on time of dosing to adjust for the CBG concentrations is unlikely to be of clinical benefit. KW - circadian rhythm KW - hydrocortisone KW - pharmacokinetics KW - transcortin Y1 - 2019 U6 - https://doi.org/10.1111/cen.13969 SN - 0300-0664 SN - 1365-2265 VL - 91 IS - 1 SP - 33 EP - 40 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Ryser, Remo A1 - Häussler, Johanna A1 - Stark, Markus A1 - Brose, Ulrich A1 - Rall, Björn C. A1 - Guill, Christian T1 - The biggest losers: habitat isolation deconsructs complex food webs from top to bottom JF - Proceedings of the Royal Society of London : B, Biological sciences N2 - Habitat fragmentation threatens global biodiversity. To date, there is only limited understanding of how the different aspects of habitat fragmentation (habitat loss, number of fragments and isolation) affect species diversity within complex ecological networks such as food webs. Here, we present a dynamic and spatially explicit food web model which integrates complex food web dynamics at the local scale and species-specific dispersal dynamics at the landscape scale, allowing us to study the interplay of local and spatial processes in metacommunities. We here explore how the number of habitat patches, i.e. the number of fragments, and an increase of habitat isolation affect the species diversity patterns of complex food webs (alpha-,beta-,gamma-, diversities). We specifically test whether there is a trophic dependency in the effect of these two factors on species diversity. In our model, habitat isolation is the main driver causing species loss and diversity decline. Our results emphasize that large-bodied consumer species at high trophic positions go extinct faster than smaller species at lower trophic levels, despite being superior dispersers that connect fragmented landscapes better. We attribute the loss of top species to a combined effect of higher biomass loss during dispersal with increasing habitat isolation in general, and the associated energy limitation in highly fragmented landscapes, preventing higher trophic levels to persist. To maintain trophic-complex and species-rich communities calls for effective conservation planning which considers the interdependence of trophic and spatial dynamics as well as the spatial context of a landscape and its energy availability. KW - food webs KW - allometry KW - bioenergetic model KW - metacommunity dynamics KW - dispersal mortality KW - landscape structure Y1 - 2019 U6 - https://doi.org/10.1098/rspb.2019.1177 SN - 0962-8452 SN - 1471-2954 VL - 286 IS - 1908 PB - Royal Society CY - London ER - TY - GEN A1 - Riedel, Simona A1 - Siemiatkowska, Beata A1 - Watanabe, Mutsumi A1 - Müller, Christina S. A1 - Schünemann, Volker A1 - Hoefgen, Rainer A1 - Leimkühler, Silke T1 - The ABCB7-Like Transporter PexA in Rhodobacter capsulatus Is Involved in the Translocation of Reactive Sulfur Species T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - The mitochondrial ATP-binding cassette (ABC) transporters ABCB7 in humans, Atm1 in yeast and ATM3 in plants, are highly conserved in their overall architecture and particularly in their glutathione binding pocket located within the transmembrane spanning domains. These transporters have attracted interest in the last two decades based on their proposed role in connecting the mitochondrial iron sulfur (Fe–S) cluster assembly with its cytosolic Fe–S cluster assembly (CIA) counterpart. So far, the specific compound that is transported across the membrane remains unknown. In this report we characterized the ABCB7-like transporter Rcc02305 in Rhodobacter capsulatus, which shares 47% amino acid sequence identity with its mitochondrial counterpart. The constructed interposon mutant strain in R. capsulatus displayed increased levels of intracellular reactive oxygen species without a simultaneous accumulation of the cellular iron levels. The inhibition of endogenous glutathione biosynthesis resulted in an increase of total glutathione levels in the mutant strain. Bioinformatic analysis of the amino acid sequence motifs revealed a potential aminotransferase class-V pyridoxal-50-phosphate (PLP) binding site that overlaps with the Walker A motif within the nucleotide binding domains of the transporter. PLP is a well characterized cofactor of L-cysteine desulfurases like IscS and NFS1 which has a role in the formation of a protein-bound persulfide group within these proteins. We therefore suggest renaming the ABCB7-like transporter Rcc02305 in R. capsulatus to PexA for PLP binding exporter. We further suggest that this ABC-transporter in R. capsulatus is involved in the formation and export of polysulfide species to the periplasm. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 740 KW - ABCB7 KW - persulfide KW - polysulfide KW - glutathione KW - ABC transporter KW - Walker A motif KW - pyridoxal-50-phosphate Y1 - 1019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-434975 SN - 1866-8372 IS - 740 ER - TY - JOUR A1 - Riedel, Simona A1 - Siemiatkowska, Beata A1 - Watanabe, Mutsumi A1 - Müller, Christina S. A1 - Schünemann, Volker A1 - Hoefgen, Rainer A1 - Leimkühler, Silke T1 - The ABCB7-Like Transporter PexA in Rhodobacter capsulatus Is Involved in the Translocation of Reactive Sulfur Species JF - Frontiers in Microbiology N2 - The mitochondrial ATP-binding cassette (ABC) transporters ABCB7 in humans, Atm1 in yeast and ATM3 in plants, are highly conserved in their overall architecture and particularly in their glutathione binding pocket located within the transmembrane spanning domains. These transporters have attracted interest in the last two decades based on their proposed role in connecting the mitochondrial iron sulfur (Fe–S) cluster assembly with its cytosolic Fe–S cluster assembly (CIA) counterpart. So far, the specific compound that is transported across the membrane remains unknown. In this report we characterized the ABCB7-like transporter Rcc02305 in Rhodobacter capsulatus, which shares 47% amino acid sequence identity with its mitochondrial counterpart. The constructed interposon mutant strain in R. capsulatus displayed increased levels of intracellular reactive oxygen species without a simultaneous accumulation of the cellular iron levels. The inhibition of endogenous glutathione biosynthesis resulted in an increase of total glutathione levels in the mutant strain. Bioinformatic analysis of the amino acid sequence motifs revealed a potential aminotransferase class-V pyridoxal-50-phosphate (PLP) binding site that overlaps with the Walker A motif within the nucleotide binding domains of the transporter. PLP is a well characterized cofactor of L-cysteine desulfurases like IscS and NFS1 which has a role in the formation of a protein-bound persulfide group within these proteins. We therefore suggest renaming the ABCB7-like transporter Rcc02305 in R. capsulatus to PexA for PLP binding exporter. We further suggest that this ABC-transporter in R. capsulatus is involved in the formation and export of polysulfide species to the periplasm. KW - ABCB7 KW - persulfide KW - polysulfide KW - glutathione KW - ABC transporter KW - Walker A motif KW - pyridoxal-50-phosphate Y1 - 2019 U6 - https://doi.org/10.3389/fmicb.2019.00406 SN - 1664-302X VL - 10 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Koebsch, Franziska A1 - Winkel, Matthias A1 - Liebner, Susanne A1 - Liu, Bo A1 - Westphal, Julia A1 - Schmiedinger, Iris A1 - Spitzy, Alejandro A1 - Gehre, Matthias A1 - Jurasinski, Gerald A1 - Köhler, Stefan A1 - Unger, Viktoria A1 - Koch, Marian A1 - Sachs, Torsten A1 - Böttcher, Michael E. T1 - Sulfate deprivation triggers high methane production in a disturbed and rewetted coastal peatland JF - Biogeosciences N2 - In natural coastal wetlands, high supplies of marine sulfate suppress methanogenesis. Coastal wetlands are, however, often subject to disturbance by diking and drainage for agricultural use and can turn to potent methane sources when rewetted for remediation. This suggests that preceding land use measures can suspend the sulfate-related methane suppressing mechanisms. Here, we unravel the hydrological relocation and biogeochemical S and C transformation processes that induced high methane emissions in a disturbed and rewetted peatland despite former brackish impact. The underlying processes were investigated along a transect of increasing distance to the coastline using a combination of concentration patterns, stable isotope partitioning, and analysis of the microbial community structure. We found that diking and freshwater rewetting caused a distinct freshening and an efficient depletion of the brackish sulfate reservoir by dissimilatory sulfate reduction (DSR). Despite some legacy effects of brackish impact expressed as high amounts of sedimentary S and elevated electrical conductivities, contemporary metabolic processes operated mainly under sulfate-limited conditions. This opened up favorable conditions for the establishment of a prospering methanogenic community in the top 30-40 cm of peat, the structure and physiology of which resemble those of terrestrial organic-rich environments. Locally, high amounts of sulfate persisted in deeper peat layers through the inhibition of DSR, probably by competitive electron acceptors of terrestrial origin, for example Fe(III). However, as sulfate occurred only in peat layers below 30-40 cm, it did not interfere with high methane emissions on an ecosystem scale. Our results indicate that the climate effect of disturbed and remediated coastal wetlands cannot simply be derived by analogy with their natural counterparts. From a greenhouse gas perspective, the re-exposure of diked wetlands to natural coastal dynamics would literally open up the floodgates for a replenishment of the marine sulfate pool and therefore constitute an efficient measure to reduce methane emissions. Y1 - 2019 U6 - https://doi.org/10.5194/bg-16-1937-2019 SN - 1726-4170 SN - 1726-4189 VL - 16 IS - 9 SP - 1937 EP - 1953 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Heim, D. M. A1 - Heim, Olga A1 - Zeng, P. A. A1 - Zheng, Jeffrey T1 - Successful Creation of Regular Patterns in Variant Maps from Bat Echolocation Calls JF - Variant Construction from Theoretical Foundation to Applications N2 - We created variant maps based on bat echolocation call recordings and outline here the transformation process and describe the resulting visual features. The maps show regular patterns while characteristic features change when bat call recording properties change. By focusing on specific visual features, we found a set of projection parameters which allowed us to classify the variant maps into two distinct groups. These results are promising indicators that variant maps can be used as basis for new echolocation call classification algorithms. KW - Echolocation KW - Algorithms KW - Morphometry KW - Fourier KW - Analysis KW - Quaternions Y1 - 2019 SN - 978-981-13-2282-2 SN - 978-981-13-2281-5 U6 - https://doi.org/10.1007/978-981-13-2282-2_25 SP - 391 EP - 400 PB - Springer CY - Singapore ER - TY - GEN A1 - Hermanussen, Michael A1 - Scheffler, Christiane A1 - Groth, Detlef A1 - Bogin, Barry T1 - Student work on trends in infant and child growth BT - an editorial T2 - Journal of biological and clinical anthropology : Anthropologischer Anzeiger : Mitteilungsorgan der Gesellschaft für Anthropologie KW - nutrition KW - impact on growth KW - geographic neighborhood KW - mortality bias KW - limb disproportions KW - physical activity KW - socioeconomic status KW - parental age KW - statistical tools Y1 - 2019 U6 - https://doi.org/10.1127/anthranz/2019/1052 SN - 0003-5548 VL - 76 IS - 5 SP - 363 EP - 364 PB - Schweizerbart CY - Stuttgart ER - TY - GEN A1 - Schieferdecker, Anne A1 - Wendler, Petra T1 - Structural mapping of missense mutations in the Pex1/Pex6 complex T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Peroxisome biogenesis disorders (PBDs) are nontreatable hereditary diseases with a broad range of severity. Approximately 65% of patients are affected by mutations in the peroxins Pex1 and Pex6. The proteins form the heteromeric Pex1/Pex6 complex, which is important for protein import into peroxisomes. To date, no structural data are available for this AAA+ ATPase complex. However, a wealth of information can be transferred from low-resolution structures of the yeast scPex1/scPex6 complex and homologous, well-characterized AAA+ ATPases. We review the abundant records of missense mutations described in PBD patients with the aim to classify and rationalize them by mapping them onto a homology model of the human Pex1/Pex6 complex. Several mutations concern functionally conserved residues that are implied in ATP hydrolysis and substrate processing. Contrary to fold destabilizing mutations, patients suffering from function-impairing mutations may not benefit from stabilizing agents, which have been reported as potential therapeutics for PBD patients. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1072 KW - Zellweger syndrome spectrum disorder (ZSSD) KW - Zellweger KW - structure KW - Pex1 KW - Pex6 KW - mutation Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-472843 SN - 1866-8372 IS - 1072 ER - TY - JOUR A1 - Schieferdecker, Anne A1 - Wendler, Petra T1 - Structural Mapping of Missense Mutations in the Pex1/Pex6 Complex JF - International journal of molecular sciences N2 - Peroxisome biogenesis disorders (PBDs) are nontreatable hereditary diseases with a broad range of severity. Approximately 65% of patients are affected by mutations in the peroxins Pex1 and Pex6. The proteins form the heteromeric Pex1/Pex6 complex, which is important for protein import into peroxisomes. To date, no structural data are available for this AAA+ ATPase complex. However, a wealth of information can be transferred from low-resolution structures of the yeast scPex1/scPex6 complex and homologous, well-characterized AAA+ ATPases. We review the abundant records of missense mutations described in PBD patients with the aim to classify and rationalize them by mapping them onto a homology model of the human Pex1/Pex6 complex. Several mutations concern functionally conserved residues that are implied in ATP hydrolysis and substrate processing. Contrary to fold destabilizing mutations, patients suffering from function-impairing mutations may not benefit from stabilizing agents, which have been reported as potential therapeutics for PBD patients. KW - Zellweger syndrome spectrum disorder (ZSSD) KW - Zellweger KW - structure KW - Pex1 KW - Pex6 KW - mutation Y1 - 2019 U6 - https://doi.org/10.3390/ijms20153756 SN - 1422-0067 VL - 20 IS - 15 PB - MDPI CY - Basel ER - TY - JOUR A1 - Höfer, C. T. A1 - Di Lella, S. A1 - Dahmani, Ismail A1 - Jungnick, N. A1 - Bordag, N. A1 - Bobone, Sara A1 - Huang, Q. A1 - Keller, S. A1 - Herrmann, A. A1 - Chiantia, Salvatore T1 - Structural determinants of the interaction between influenza A virus matrix protein M1 and lipid membranes JF - Biochimica et biophysica acta : Biomembranes N2 - Influenza A virus is a pathogen responsible for severe seasonal epidemics threatening human and animal populations every year. One of the ten major proteins encoded by the viral genome, the matrix protein M1, is abundantly produced in infected cells and plays a structural role in determining the morphology of the virus. During assembly of new viral particles, M1 is recruited to the host cell membrane where it associates with lipids and other viral proteins. The structure of M1 is only partially known. In particular, structural details of M1 interactions with the cellular plasma membrane as well as M1 protein interactions and multimerization have not been clarified, yet. In this work, we employed a set of complementary experimental and theoretical tools to tackle these issues. Using raster image correlation, surface plasmon resonance and circular dichroism spectroscopies, we quantified membrane association and oligomerization of full-length M1 and of different genetically engineered M1 constructs (i.e., N- and C-terminally truncated constructs and a mutant of the polybasic region, residues 95-105). Furthermore, we report novel information on structural changes in M1 occurring upon binding to membranes. Our experimental results are corroborated by an all-atom model of the full-length M1 protein bound to a negatively charged lipid bilayer. KW - Virus assembly KW - Protein-lipid interaction KW - Fluorescence microscopy KW - SPR KW - CD spectroscopy KW - Influenza A virus Y1 - 2019 U6 - https://doi.org/10.1016/j.bbamem.2019.03.013 SN - 0005-2736 SN - 1879-2642 VL - 1861 IS - 6 SP - 1123 EP - 1134 PB - Elsevier CY - Amsterdam ER - TY - THES A1 - Raatz, Michael T1 - Strategies within predator-prey interactions – from individuals to ecosystems T1 - Strategien in Räuber-Beute Interaktionen – vom Individuum bis zum Ökosystem N2 - Predator-prey interactions provide central links in food webs. These interaction are directly or indirectly impacted by a number of factors. These factors range from physiological characteristics of individual organisms, over specifics of their interaction to impacts of the environment. They may generate the potential for the application of different strategies by predators and prey. Within this thesis, I modelled predator-prey interactions and investigated a broad range of different factors driving the application of certain strategies, that affect the individuals or their populations. In doing so, I focused on phytoplankton-zooplankton systems as established model systems of predator-prey interactions. At the level of predator physiology I proposed, and partly confirmed, adaptations to fluctuating availability of co-limiting nutrients as beneficial strategies. These may allow to store ingested nutrients or to regulate the effort put into nutrient assimilation. We found that these two strategies are beneficial at different fluctuation frequencies of the nutrients, but may positively interact at intermediate frequencies. The corresponding experiments supported our model results. We found that the temporal structure of nutrient fluctuations indeed has strong effects on the juvenile somatic growth rate of {\itshape Daphnia}. Predator colimitation by energy and essential biochemical nutrients gave rise to another physiological strategy. High-quality prey species may render themselves indispensable in a scenario of predator-mediated coexistence by being the only source of essential biochemical nutrients, such as cholesterol. Thereby, the high-quality prey may even compensate for a lacking defense and ensure its persistence in competition with other more defended prey species. We found a similar effect in a model where algae and bacteria compete for nutrients. Now, being the only source of a compound that is required by the competitor (bacteria) prevented the competitive exclusion of the algae. In this case, the essential compounds were the organic carbon provided by the algae. Here again, being indispensable served as a prey strategy that ensured its coexistence. The latter scenario also gave rise to the application of the two metabolic strategies of autotrophy and heterotrophy by algae and bacteria, respectively. We found that their coexistence allowed the recycling of resources in a microbial loop that would otherwise be lost. Instead, these resources were made available to higher trophic levels, increasing the trophic transfer efficiency in food webs. The predation process comprises the next higher level of factors shaping the predator-prey interaction, besides these factors that originated from the functioning or composition of individuals. Here, I focused on defensive mechanisms and investigated multiple scenarios of static or adaptive combinations of prey defense and predator offense. I confirmed and extended earlier reports on the coexistence-promoting effects of partially lower palatability of the prey community. When bacteria and algae are coexisting, a higher palatability of bacteria may increase the average predator biomass, with the side effect of making the population dynamics more regular. This may facilitate experimental investigations and interpretations. If defense and offense are adaptive, this allows organisms to maximize their growth rate. Besides this fitness-enhancing effect, I found that co-adaptation may provide the predator-prey system with the flexibility to buffer external perturbations. On top of these rather internal factors, environmental drivers also affect predator-prey interactions. I showed that environmental nutrient fluctuations may create a spatio-temporal resource heterogeneity that selects for different predator strategies. I hypothesized that this might favour either storage or acclimation specialists, depending on the frequency of the environmental fluctuations. We found that many of these factors promote the coexistence of different strategies and may therefore support and sustain biodiversity. Thus, they might be relevant for the maintenance of crucial ecosystem functions that also affect us humans. Besides this, the richness of factors that impact predator-prey interactions might explain why so many species, especially in the planktonic regime, are able to coexist. N2 - Organismen interagieren miteinander und mit ihrer Umwelt. Innerhalb dieses Netzwerks von Interaktionen sind Fraßbeziehungen zwischen Räubern und ihrer Beute von zentraler Bedeutung. Sie werden auf verschiedenen Ebenen von unterschiedlichen Faktoren beeinflusst, was zur Ausprägung von diversen Strategien von Räuber oder Beute führen kann. Diese Faktoren und die Strategien die sie hervor bringen sind Gegenstand dieser Doktorarbeit. In mehreren Modellierungsstudien habe ich vielseitige Faktoren untersucht, die sich dem Aufbau einzelner Organismen, Verteidigungs- und Angriffsmechanismen sowie Umwelteinflüssen zuordnen lassen. Dabei konzentrierte ich mich auf ein etabliertes Modellsystem zur Erforschung von Räuber-Beute-Dynamiken und untersuchte die Fraßbeziehung zwischen Phytoplankton als Beute und Zooplankton als Räuber. Ich fand heraus, dass die Bereitstellung von essentiellen Ressourcen für Konkurrenten oder Räuber eine Strategie sein kann, mit der Beutearten sich vor dem Aussterben schützen können. Auch die direkte Verteidigung gegen den Räuber ist eine häufige Strategie zur Verringerung des Fraßdrucks und kann ebenfalls Koexistenz fördern. Für anpassungsfähige Verteidigung der Beute und Angriffsstärke des Räubers konnte ich zeigen, dass dies sowohl die Fitness erhöhen, als auch die Robustheit der Räuber-Beute-Dynamiken gegen äußere Störungen erhöhen kann. Weiterhin fand ich heraus, dass physiologische Anpassungsmechanismen wie Speicherung oder anpassungsfähige Aufnahme von Nährstoffen die Wachstumsrate des Räubers verbessern können, wenn die Qualität der verfügbaren Beute in der Umwelt des Räubers fluktuiert. Viele der Strategien, die ich in dieser Arbeit herausgestellt habe, können die Koexistenz von verschiedenen Arten fördern und damit zu erhöhter Biodiversität beitragen, welche wiederum entscheidend ist für die Stabilität von Ökosystemen und deren Nutzbarkeit. KW - predator-prey KW - biodiversity KW - modelling KW - Räuber-Beute KW - Biodiversität KW - Modellierung Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-426587 ER - TY - JOUR A1 - Martiel, Isabelle A1 - Müller-Werkmeister, Henrike A1 - Cohen, Aina E. T1 - Strategies for sample delivery for femtosecond crystallography JF - Acta Crystallographica : Section D, Structural biology N2 - Highly efficient data-collection methods are required for successful macromolecular crystallography (MX) experiments at X-ray free-electron lasers (XFELs). XFEL beamtime is scarce, and the high peak brightness of each XFEL pulse destroys the exposed crystal volume. It is therefore necessary to combine diffraction images from a large number of crystals (hundreds to hundreds of thousands) to obtain a final data set, bringing about sample-refreshment challenges that have previously been unknown to the MX synchrotron community. In view of this experimental complexity, a number of sample delivery methods have emerged, each with specific requirements, drawbacks and advantages. To provide useful selection criteria for future experiments, this review summarizes the currently available sample delivery methods, emphasising the basic principles and the specific sample requirements. Two main approaches to sample delivery are first covered: (i) injector methods with liquid or viscous media and (ii) fixed-target methods using large crystals or using microcrystals inside multi-crystal holders or chips. Additionally, hybrid methods such as acoustic droplet ejection and crystal extraction are covered, which combine the advantages of both fixed-target and injector approaches. KW - sample delivery KW - serial femtosecond crystallography KW - protein microcrystals KW - XFELs Y1 - 2019 U6 - https://doi.org/10.1107/S2059798318017953 SN - 2059-7983 SN - 0907-4449 VL - 75 SP - 160 EP - 177 PB - Bognor Regis CY - Wiley ER - TY - JOUR A1 - Seitz, Aaron P. A1 - Schumacher, Fabian A1 - Baker, Jennifer A1 - Soddemann, Matthias A1 - Wilker, Barbara A1 - Caldwell, Charles C. A1 - Gobble, Ryan M. A1 - Kamler, Markus A1 - Becker, Katrin Anne A1 - Beck, Sascha A1 - Kleuser, Burkhard A1 - Edwards, Michael J. A1 - Gulbins, Erich T1 - Sphingosine-coating of plastic surfaces prevents ventilator-associated pneumonia JF - Journal of molecular medicine N2 - Ventilator-associated pneumonia (VAP) is a major cause of morbidity and mortality in critically ill patients. Here, we employed the broad antibacterial effects of sphingosine to prevent VAP by developing a novel method of coating surfaces of endotracheal tubes with sphingosine and sphingosine analogs. Sphingosine and phytosphingosine coatings of endotracheal tubes prevent adherence and mediate killing of Pseudomonas aeruginosa, Acinetobacter baumannii, and Staphylococcus aureus, even in biofilms. Most importantly, sphingosine-coating of endotracheal tubes also prevented P. aeruginosa and S. aureus pneumonia in vivo. Coating of the tubes with sphingosine was stable, without obvious side effects on tracheal epithelial cells and did not induce inflammation. In summary, we describe a novel method to coat plastic surfaces and provide evidence for the application of sphingosine and phytosphingosine as novel antimicrobial coatings to prevent bacterial adherence and induce killing of pathogens on the surface of endotracheal tubes with potential to prevent biofilm formation and VAP.Key messagesNovel dip-coating method to coat plastic surfaces with lipids.Sphingosine and phytosphingosine as novel antimicrobial coatings on plastic surface.Sphingosine coatings of endotracheal tubes prevent bacterial adherence and biofilms.Sphingosine coatings of endotracheal tubes induce killing of pathogens.Sphingosine coatings of endotracheal tubes ventilator-associated pneumonia. KW - Coating KW - Plastic surfaces KW - Sphingosine KW - Ventilation KW - Acinetobacter baumannii KW - Pseudomonas aeruginosa KW - Staphylococcus aureus Y1 - 2019 U6 - https://doi.org/10.1007/s00109-019-01800-1 SN - 0946-2716 SN - 1432-1440 VL - 97 IS - 8 SP - 1195 EP - 1211 PB - Springer CY - Heidelberg ER - TY - THES A1 - Ramming, Anna T1 - Specific Roles of POLY(A) POLYMERASE1 in the male Gametophyte and Beyond Y1 - 2019 ER - TY - JOUR A1 - Bubner, Ben A1 - Buchheit, Ramona A1 - Friedrich, Frank A1 - Kummer, Volker A1 - Scholler, Markus T1 - Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov. JF - MycoKeys N2 - Species of rust fungi of the genus Milesina (Pucciiastraceae, Pucciniales) are distributed mainly in northern temperate regions. They host-alternate between needles of fir (Abies spp.) and fronds of ferns (species of Polypodiales). Milesina species are distinguished based on host taxonomy and urediniospore morphology. In this study, 12 species of Milesina from Europe were revised. Specimens were examined by light and scanning electron microscopy for urediniospore morphology with a focus on visualising germ pores (number, size and position) and echinulation. In addition, barcode loci (ITS, nad6, 28S) were used for species delimitation and for molecular phylogenetic analyses. Barcodes of 72 Milesina specimens were provided, including 11 of the 12 species. Whereas urediniospore morphology features were sufficient to distinguish all 12 Milesina species except for 2 (M. blechni and M. kriegeriana), ITS sequences separated only 4 of 11 species. Sequencing with 28S and nad6 did not improve species resolution. Phylogenetic analysis, however, revealed four phylogenetic groups within Milesina that also correlate with specific urediniospore characters (germ pore number and position and echinulation). These groups are proposed as new sections within Milesina (sections Milesina, Vogesiacae M. Scholler & Bubner, sect. nov., Scolopendriorum M. Scholler & Bubner, sect. nov. and Carpaticae M. Scholler & Bubner, sect. nov.). In addition, Milesina woodwardiana Buchheit & M. Scholler, sp. nov. on Woodwardia radicans, a member of the type section Milesina, is newly described. An identification key for European Milesina species, based on urediniospore features, is provided. KW - Abies alba KW - Polypodiales KW - GBOL KW - germ pores KW - host alternation KW - Uredinopsis KW - Europe Y1 - 2019 U6 - https://doi.org/10.3897/mycokeys.48.30350 SN - 1314-4057 SN - 1314-4049 IS - 48 SP - 1 EP - 40 PB - Pensoft Publishers CY - Sofia ER - TY - JOUR A1 - Penone, Caterina A1 - Allan, Eric A1 - Soliveres, Santiago A1 - Felipe-Lucia, Maria R. A1 - Gossner, Martin M. A1 - Seibold, Sebastian A1 - Simons, Nadja K. A1 - Schall, Peter A1 - van der Plas, Fons A1 - Manning, Peter A1 - Manzanedo, Ruben D. A1 - Boch, Steffen A1 - Prati, Daniel A1 - Ammer, Christian A1 - Bauhus, Juergen A1 - Buscot, Francois A1 - Ehbrecht, Martin A1 - Goldmann, Kezia A1 - Jung, Kirsten A1 - Mueller, Joerg A1 - Mueller, Joerg C. A1 - Pena, Rodica A1 - Polle, Andrea A1 - Renner, Swen C. A1 - Ruess, Liliane A1 - Schoenig, Ingo A1 - Schrumpf, Marion A1 - Solly, Emily F. A1 - Tschapka, Marco A1 - Weisser, Wolfgang W. A1 - Wubet, Tesfaye A1 - Fischer, Markus T1 - Specialisation and diversity of multiple trophic groups are promoted by different forest features JF - Ecology letters N2 - While forest management strongly influences biodiversity, it remains unclear how the structural and compositional changes caused by management affect different community dimensions (e.g. richness, specialisation, abundance or completeness) and how this differs between taxa. We assessed the effects of nine forest features (representing stand structure, heterogeneity and tree composition) on thirteen above- and belowground trophic groups of plants, animals, fungi and bacteria in 150 temperate forest plots differing in their management type. Canopy cover decreased light resources, which increased community specialisation but reduced overall diversity and abundance. Features increasing resource types and diversifying microhabitats (admixing of oaks and conifers) were important and mostly affected richness. Belowground groups responded differently to those aboveground and had weaker responses to most forest features. Our results show that we need to consider forest features rather than broad management types and highlight the importance of considering several groups and community dimensions to better inform conservation. KW - biodiversity exploratories KW - dark diversity KW - forest management KW - global change KW - land-use KW - multidiversity KW - specialisation KW - temperate forests Y1 - 2018 U6 - https://doi.org/10.1111/ele.13182 SN - 1461-023X SN - 1461-0248 VL - 22 IS - 1 SP - 170 EP - 180 PB - Wiley CY - Hoboken ER - TY - THES A1 - Schiro, Gabriele T1 - Spatial distribution of phyllosphere fungi in topographically heterogeneous wheat fields BT - an analysis of abiotic and biotic driving factors Y1 - 2019 ER - TY - JOUR A1 - Chaturvedi, Neha A1 - Mehrotra, Bagish A1 - Kumari, Sangeeta A1 - Gupta, Saurabh A1 - Subramanya, Hosahalli A1 - Saberwal, Gayatri T1 - Some data quality issues at ClinicalTrials.gov JF - Trials KW - ClinicalTrials KW - gov KW - Drugs KW - Biologicals KW - Clinical trial KW - Principal Investigator KW - Data quality KW - Database errors Y1 - 2019 U6 - https://doi.org/10.1186/s13063-019-3408-2 SN - 1745-6215 VL - 20 PB - BMC CY - London ER - TY - THES A1 - Reeg, Jette T1 - Simulating the impact of herbicide drift exposure on non-target terrestrial plant communities T1 - Simulation der Auswirkungen von Herbizid-Drift-Expositionen auf Gemeinschaften von Nichtzielpflanzen N2 - In Europe, almost half of the terrestrial landscape is used for agriculture. Thus, semi-natural habitats such as field margins are substantial for maintaining diversity in intensively managed farmlands. However, plants located at field margins are threatened by agricultural practices such as the application of pesticides within the fields. Pesticides are chemicals developed to control for undesired species within agricultural fields to enhance yields. The use of pesticides implies, however, effects on non-target organisms within and outside of the agricultural fields. Non-target organisms are organisms not intended to be sprayed or controlled for. For example, plants occurring in field margins are not intended to be sprayed, however, can be impaired due to herbicide drift exposure. The authorization of plant protection products such as herbicides requires risk assessments to ensure that the application of the product has no unacceptable effects on the environment. For non-target terrestrial plants (NTTPs), the risk assessment is based on standardized greenhouse studies on plant individual level. To account for the protection of plant populations and communities under realistic field conditions, i.e. extrapolating from greenhouse studies to field conditions and from individual-level to community-level, assessment factors are applied. However, recent studies question the current risk assessment scheme to meet the specific protection goals for non-target terrestrial plants as suggested by the European Food Safety Authority (EFSA). There is a need to clarify the gaps of the current risk assessment and to include suitable higher tier options in the upcoming guidance document for non-target terrestrial plants. In my thesis, I studied the impact of herbicide drift exposure on NTTP communities using a mechanistic modelling approach. I addressed main gaps and uncertainties of the current risk assessment and finally suggested this modelling approach as a novel higher tier option in future risk assessments. Specifically, I extended the plant community model IBC-grass (Individual-based community model for grasslands) to reflect herbicide impacts on plant individuals. In the first study, I compared model predictions of short-term herbicide impacts on artificial plant communities with empirical data. I demonstrated the capability of the model to realistically reflect herbicide impacts. In the second study, I addressed the research question whether or not reproductive endpoints need to be included in future risk assessments to protect plant populations and communities. I compared the consequences of theoretical herbicide impacts on different plant attributes for long-term plant population dynamics in the community context. I concluded that reproductive endpoints only need to be considered if the herbicide effect is assumed to be very high. The endpoints measured in the current vegetative vigour and seedling emergence studies had high impacts for the dynamic of plant populations and communities already at lower effect intensities. Finally, the third study analysed long-term impacts of herbicide application for three different plant communities. This study highlighted the suitability of the modelling approach to simulate different communities and thus detecting sensitive environmental conditions. Overall, my thesis demonstrates the suitability of mechanistic modelling approaches to be used as higher tier options for risk assessments. Specifically, IBC-grass can incorporate available individual-level effect data of standardized greenhouse experiments to extrapolate to community-level under various environmental conditions. Thus, future risk assessments can be improved by detecting sensitive scenarios and including worst-case impacts on non-target plant communities. N2 - Fast die Hälfte der gesamten Landfläche in Europa wird für landwirtschaftliche Zwecke genutzt. Daher sind halb-natürliche Gebiete, wie zum Beispiel Ackerränder, von besonderer Bedeutung für den Artenreichtum in intensiv genutzten Ackerlandschaften. Vor allem in den intensiv genutzten Äckern werden Chemikalien eingesetzt um die Erträge zu erhöhen. So werden zum Beispiel Pflanzenschutzmittel eingesetzt, um Unkräuter im Acker zu vernichten. Allerdings kann dieser Einsatz auch Auswirkungen auf sogenannte Nicht-Zielarten haben. Dies sind solche Arten oder Artindividuen, die z.B. innerhalb vom Acker nicht in Konkurrenz mit den darauf wachsenden Getreidesorten stehen oder sich nicht innerhalb vom Feld befinden aber dennoch den Pflanzenschutzmitteln ausgesetzt sind. Um den Artenreichtum in halb-natürlichen Gebieten zu schützen, ist es daher notwendig eine Risikoabschätzung durchzuführen bevor ein Pflanzenschutzmittel für den Verkauf und die Anwendung zugelassen wird. Für terrestrische Nicht-Zielpflanzen erfolgt eine solche Risikoabschätzung basierend auf standardisierten Gewächshausexperimenten, in denen die Effekte auf der Ebene von Einzelindividuen gemessen werden. Um das letztliche Risiko im Freiland für ganze Pflanzengemeinschaften abzuschätzen, werden sogenannte Unsicherheitsfaktoren hinzugenommen. Allerdings stellen neuere Studien in Frage, ob der derzeitige Ansatz ausreichend sicher ist. Dies gilt vor allem in Bezug auf die aktuellen speziellen Schutzziele, die den Fokus auf den Schutz von Pflanzengemeinschaften und Artenreichtum legen. Es ist daher zwingend notwendig die Wissenslücken der derzeitigen Risikoabschätzung zu schließen und Optionen zu weiteren Studien zu geben, die das Risiko vom Einsatz von Pflanzenschutzmitteln für Nicht-Zielpflanzen realistischer abschätzen können. In meiner Dissertation nutze ich einen mechanistischen Modellierungsansatz um den Einfluss von Pflanzenschutzmitteln auf Nicht-Zielpflanzengemeinschaften zu untersuchen. Hierbei spreche ich die wesentlichen Wissenslücken und Unklarheiten der aktuellen Risikoabschätzung an und schlage zusammenfassend eine neue Option für eine realistischere Abschätzung des Risikos vor. Hierzu integriere ich den Einfluss von Herbiziden auf Einzelindividuen in das Pflanzengemeinschaftsmodell IBC-grass. In meiner ersten Studie vergleiche ich Modellvorhersagen von kurzzeitigen Herbizideffekten in künstlichen Artgemeinschaften mit experimentellen Daten. Mit der Studie zeige ich, dass das Modell den Einfluss von Herbiziden auf die Pflanzengemeinschaft realistisch vorhersagen kann. In der zweiten Studie fokussiere ich mich auf die Frage, ob Effekte auf weitere Pflanzeneigenschaften, insbesondere Fortpflanzungseigenschaften, wie zum Beispiel die Samenproduktion, im Rahmen der standardisierten Gewächshausstudien gemessen werden sollten. Die Studie zeigt, dass die derzeitig gemessenen Pflanzeneigenschaften am meisten Einfluss auf die Dynamiken einer Pflanzengesellschaft haben und somit schon geringe Schädigungen dieser Eigenschaften auf Individuenebene Auswirkungen für die Gemeinschaft haben. Dahingegen führten nur sehr starke Effekte auf die Fortpflanzungseigenschaften zu einem Einfluss auf Gemeinschaftsebene. Mit der letzten Studie zeige ich, dass der Modellansatz dazu genutzt werden kann Auswirkungen für unterschiedliche Pflanzengemeinschaften darzustellen. Zusammengefasst zeigen die Studien meiner Dissertation, dass mechanistische Modellierung eine geeignete Option für eine realistischere Risikoabschätzung ist. Auf Grund des besonderen Designs von IBC-grass können die durch derzeitige Gewächshausstudien zur Verfügung stehenden empirischen Daten in das Modell eingearbeitet werden und somit das Risiko auf Gemeinschaftsebene abgeschätzt werden. Mit Hilfe des Modells können mehrere Umweltbedingungen getestet werden und somit Extremszenarien abgedeckt werden. Meine Studien tragen dazu bei, zukünftige Risikoabschätzungen für Nicht-Zielpflanzen zu verbessern. KW - ecological modelling KW - pesticide KW - risk assessment KW - plant community KW - non-target organisms KW - ökologische Modellierung KW - Pestizide KW - Risikoabschätzung KW - Pflanzengemeinschaft KW - Nicht-Zielorganismen Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-429073 ER - TY - THES A1 - Langhammer, Maria T1 - Simulating biodiversity responses to land use mosaics in agricultural landscapes BT - an overview of the possibilities and potential Y1 - 2019 ER - TY - JOUR A1 - Hering, Robert A1 - Hauptfleisch, Morgan A1 - Geissler, Katja A1 - Marquart, Arnim A1 - Schoenen, Maria A1 - Blaum, Niels T1 - Shrub encroachment is not always land degradation BT - Insights from ground‐dwelling beetle species niches along a shrub cover gradient in a semi‐arid Namibian savanna JF - Land degradation & development N2 - Shrub encroachment in semi-arid savannas is induced by interacting effects of climate, fire suppression, and unsustainable livestock farming; it carries a severe risk of land degradation and strongly influences natural communities that provide key ecosystem functions. However, species-specific effects of shrub cover on many animal groups that act as indicators of degradation remain largely unknown. We analysed the consequences of shrub encroachment for ground-dwelling beetles in a semi-arid Namibian savanna rangeland, where beetles and vegetation were recorded along a shrub cover gradient (30%). Focusing on species niche breadths and optima, we identified two crucial shrub cover thresholds (2.9% and 10.0%), corresponding to major changes in the beetle communities with implications for savanna ecosystem functioning. Niche optima of most species were between the first and second thresholds; beyond the second threshold, saprophagous, coprophagous, and rare predatory beetles declined in numbers and diversity. This is problematic because beetles provide important ecosystem functions, such as decomposition and nutrient cycling. However, we also found that certain species were adapted to high shrub cover, thus providing examples of niche differentiation. Despite the predominantly negative effects of heavy shrub encroachment on beetle communities, shrubs in their early life stages apparently provide essential structures, which enhance habitat quality for ground-dwelling beetles. Our results demonstrate that shrub encroachment can have mixed effects on ground-dwelling beetle communities and hence on savanna ecosystem functioning. We, therefore, conclude that rangeland management and restoration should consider the complex trade-offs between species-specific effects and the level of encroachment for sustainable land use. KW - Coleoptera KW - rangeland KW - semi-arid savanna KW - shrub encroachment KW - species niche KW - threshold Y1 - 2018 U6 - https://doi.org/10.1002/ldr.3197 SN - 1085-3278 SN - 1099-145X VL - 30 IS - 1 SP - 14 EP - 24 PB - Wiley CY - Chichester ER - TY - JOUR A1 - Lemaire, Olivier N. A1 - Honore, Flora A. A1 - Tempel, Sebastien A1 - Fortier, Emma M. A1 - Leimkühler, Silke A1 - Mejean, Vincent A1 - Iobbi-Nivol, Chantal T1 - Shewanella decolorationis LDS1 Chromate Resistance JF - Applied and environmental microbiology N2 - The genus Shewanella is well known for its genetic diversity, its outstanding respiratory capacity, and its high potential for bioremediation. Here, a novel strain isolated from sediments of the Indian Ocean was characterized. A 16S rRNA analysis indicated that it belongs to the species Shewanella decolorationis. It was named Shewanella decolorationis LDS1. This strain presented an unusual ability to grow efficiently at temperatures from 24 degrees C to 40 degrees C without apparent modifications of its metabolism, as shown by testing respiratory activities or carbon assimilation, and in a wide range of salt concentrations. Moreover, S. decolorationis LDS1 tolerates high chromate concentrations. Indeed, it was able to grow in the presence of 4 mM chromate at 28 degrees C and 3 mM chromate at 40 degrees C. Interestingly, whatever the temperature, when the culture reached the stationary phase, the strain reduced the chromate present in the growth medium. In addition, S. decolorationis LDS1 degrades different toxic dyes, including anthraquinone, triarylmethane, and azo dyes. Thus, compared to Shewanella oneidensis, this strain presented better capacity to cope with various abiotic stresses, particularly at high temperatures. The analysis of genome sequence preliminary data indicated that, in contrast to S. oneidensis and S. decolorationis S12, S. decolorationis LDS1 possesses the phosphorothioate modification machinery that has been described as participating in survival against various abiotic stresses by protecting DNA. We demonstrate that its heterologous production in S. oneidensis allows it to resist higher concentrations of chromate. IMPORTANCE Shewanella species have long been described as interesting microorganisms in regard to their ability to reduce many organic and inorganic compounds, including metals. However, members of the Shewanella genus are often depicted as cold-water microorganisms, although their optimal growth temperature usually ranges from 25 to 28 degrees C under laboratory growth conditions. Shewanella decolorationis LDS1 is highly attractive, since its metabolism allows it to develop efficiently at temperatures from 24 to 40 degrees C, conserving its ability to respire alternative substrates and to reduce toxic compounds such as chromate or toxic dyes. Our results clearly indicate that this novel strain has the potential to be a powerful tool for bioremediation and unveil one of the mechanisms involved in its chromate resistance. KW - Shewanella KW - bioremediation KW - chromium KW - decolorization KW - dndBCDE KW - dyes KW - temperature Y1 - 2019 U6 - https://doi.org/10.1128/AEM.00777-19 SN - 0099-2240 SN - 1098-5336 VL - 85 IS - 18 PB - American Society for Microbiology CY - Washington ER - TY - JOUR A1 - Sperber, Hannah Sabeth A1 - Welke, Robert-William A1 - Petazzi, Roberto Arturo A1 - Bergmann, Ronny A1 - Schade, Matthias A1 - Shai, Yechiel A1 - Chiantia, Salvatore A1 - Herrmann, Andreas A1 - Schwarzer, Roland T1 - Self-association and subcellular localization of Puumala hantavirus envelope proteins JF - Scientific reports N2 - Hantavirus assembly and budding are governed by the surface glycoproteins Gn and Gc. In this study, we investigated the glycoproteins of Puumala, the most abundant Hantavirus species in Europe, using fluorescently labeled wild-type constructs and cytoplasmic tail (CT) mutants. We analyzed their intracellular distribution, co-localization and oligomerization, applying comprehensive live, single-cell fluorescence techniques, including confocal microscopy, imaging flow cytometry, anisotropy imaging and Number&Brightness analysis. We demonstrate that Gc is significantly enriched in the Golgi apparatus in absence of other viral components, while Gn is mainly restricted to the endoplasmic reticulum (ER). Importantly, upon co-expression both glycoproteins were found in the Golgi apparatus. Furthermore, we show that an intact CT of Gc is necessary for efficient Golgi localization, while the CT of Gn influences protein stability. Finally, we found that Gn assembles into higher-order homo-oligomers, mainly dimers and tetramers, in the ER while Gc was present as mixture of monomers and dimers within the Golgi apparatus. Our findings suggest that PUUV Gc is the driving factor of the targeting of Gc and Gn to the Golgi region, while Gn possesses a significantly stronger self-association potential. Y1 - 2019 U6 - https://doi.org/10.1038/s41598-018-36879-y SN - 2045-2322 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Eugenia Tietze, Hedwig Selma A1 - Joshi, Jasmin Radha A1 - Pugnaire, Francisco Ignacio A1 - Dechoum, Michele de Sa T1 - Seed germination and seedling establishment of an invasive tropical tree species under different climate change scenarios JF - Austral ecology N2 - Increasing air temperature and atmospheric CO2 levels may affect the distribution of invasive species. Whereas there is wide knowledge on the effect of global change on temperate species, responses of tropical invasive species to these two global change drivers are largely unknown. We conducted a greenhouse experiment on Terminalia catappa L. (Combretaceae), an invasive tree species on Brazilian coastal areas, to evaluate the effects of increased air temperature and CO2 concentration on seed germination and seedling growth on the island of Santa Catarina (Florianopolis, Brazil). Seeds of the invasive tree were subjected to two temperature levels (ambient and +1.6 degrees C) and two CO2 levels (ambient and 650 ppmv) with a factorial design. Increased temperature enhanced germination rate and shortened germination time of T. catappa seeds. It also increased plant height, number of leaves and above-ground biomass. By contrast, increased atmospheric CO2 concentration had no significant effects, and the interaction between temperature and CO2 concentration did not affect any of the measured traits. Terminalia catappa adapts to a relatively broad range of environmental conditions, being able to tolerate cooler temperatures in its invasive range. As T. catappa is native to tropical areas, global warming might favour its establishment along the coast of subtropical South America, while increased CO2 levels seem not to have significant effects on seed germination or seedling growth. KW - CO2 concentration KW - coastal dunes KW - establishment KW - invasive plant KW - plant invasion KW - temperature KW - Terminalia catappa Y1 - 2019 U6 - https://doi.org/10.1111/aec.12809 SN - 1442-9985 SN - 1442-9993 VL - 44 IS - 8 SP - 1351 EP - 1358 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Scherer, Cedric A1 - Radchuk, Viktoriia A1 - Staubach, Christoph A1 - Mueller, Sophie A1 - Blaum, Niels A1 - Thulke, Hans-Hermann A1 - Kramer-Schadt, Stephanie T1 - Seasonal host life-history processes fuel disease dynamics at different spatial scales JF - Journal of animal ecology : a journal of the British Ecological Society N2 - Understanding the drivers underlying disease dynamics is still a major challenge in disease ecology, especially in the case of long-term disease persistence. Even though there is a strong consensus that density-dependent factors play an important role for the spread of diseases, the main drivers are still discussed and, more importantly, might differ between invasion and persistence periods. Here, we analysed long-term outbreak data of classical swine fever, an important disease in both wild boar and livestock, prevalent in the wild boar population from 1993 to 2000 in Mecklenburg-Vorpommern, Germany. We report outbreak characteristics and results from generalized linear mixed models to reveal what factors affected infection risk on both the landscape and the individual level. Spatiotemporal outbreak dynamics showed an initial wave-like spread with high incidence during the invasion period followed by a drop of incidence and an increase in seroprevalence during the persistence period. Velocity of spread increased with time during the first year of outbreak and decreased linearly afterwards, being on average 7.6 km per quarter. Landscape- and individual-level analyses of infection risk indicate contrasting seasonal patterns. During the persistence period, infection risk on the landscape level was highest during autumn and winter seasons, probably related to spatial behaviour such as increased long-distance movements and contacts induced by rutting and escaping movements. In contrast, individual-level infection risk peaked in spring, probably related to the concurrent birth season leading to higher densities, and was significantly higher in piglets than in reproductive animals. Our findings highlight that it is important to investigate both individual- and landscape-level patterns of infection risk to understand long-term persistence of wildlife diseases and to guide respective management actions. Furthermore, we highlight that exploring different temporal aggregation of the data helps to reveal important seasonal patterns, which might be masked otherwise. KW - classical swine fever KW - disease invasion KW - infection risk KW - pathogen persistence KW - seasonality KW - Sus scrofa KW - wild boar KW - wildlife disease Y1 - 2019 U6 - https://doi.org/10.1111/1365-2656.13070 SN - 0021-8790 SN - 1365-2656 VL - 88 IS - 11 SP - 1812 EP - 1824 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Mayer, Martin A1 - Ullmann, Wiebke A1 - Heinrich, Rebecca A1 - Fischer, Christina A1 - Blaum, Niels A1 - Sunde, Peter T1 - Seasonal effects of habitat structure and weather on the habitat selection and home range size of a mammal in agricultural landscapes JF - Landscape ecology N2 - Context Human land use intensified over the last century and simultaneously, extreme weather events have become more frequent. However, little is known about the interplay between habitat structure, direct short-term weather effects and indirect seasonal effects on animal space use and behavior. Objectives We used the European hare (Lepus europaeus) as model to investigate how habitat structure and weather conditions affect habitat selection and home range size, predictors for habitat quality and energetic requirements. Methods Using > 100,000 GPS positions of 60 hares in three areas in Denmark and Germany, we analyzed habitat selection and home range size in response to seasonally changing habitat structure, measured as vegetation height and agricultural field size, and weather. We compared daily and monthly home ranges to disentangle between direct short-term weather effects and indirect seasonal effects of climate. Results Habitat selection and home range size varied seasonally as a response to changing habitat structure, potentially affecting the availability of food and shelter. Overall, habitat structure and seasonality were more important in explaining hare habitat selection and home range size compared to direct weather conditions. Nevertheless, hares adjusted habitat selection and daily home range size in response to temperature, wind speed and humidity, possibly in response to thermal constrains and predation risk. Conclusions For effective conservation, habitat heterogeneity should be increased, e.g. by reducing agricultural field sizes and the implementation of set-asides that provide both forage and shelter, especially during the colder months of the year. KW - European hare KW - GPS KW - Habitat selection KW - Home range KW - Lepus europaeus KW - Weather Y1 - 2019 U6 - https://doi.org/10.1007/s10980-019-00878-9 SN - 0921-2973 SN - 1572-9761 VL - 34 IS - 10 SP - 2279 EP - 2294 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Börtlein, Charlene A1 - Schumacher, Fabian A1 - Kleuser, Burkhard A1 - Dölken, Lars A1 - Avota, Elita T1 - Role of Neutral Sphingomyelinase-2 (NSM 2) in the Control of T Cell Plasma Membrane Lipid Composition and Cholesterol Homeostasis JF - Frontiers in cell and developmental biology N2 - The activity of neutral sphingomyelinase-2 (NSM2) to catalyze the conversion of sphingomyelin (SM) to ceramide and phosphocholine at the cytosolic leaflet of plasma membrane (PM) is important in T cell receptor (TCR) signaling. We recently identified PKC zeta as a major NSM2 downstream effector which regulates microtubular polarization. It remained, however, unclear to what extent NSM2 activity affected overall composition of PM lipids and downstream effector lipids in antigen stimulated T cells. Here, we provide a detailed lipidomics analyses on PM fractions isolated from TCR stimulated wild type and NSM2 deficient (Delta NSM) Jurkat T cells. This revealed that in addition to that of sphingolipids, NSM2 depletion also affected concentrations of many other lipids. In particular, NSM2 ablation resulted in increase of lyso-phosphatidylcholine (LPC) and lyso-phosphatidylethanolamine (LPE) which both govern PM biophysical properties. Crucially, TCR dependent upregulation of the important T cell signaling lipid diacylglycerol (DAG), which is fundamental for activation of conventional and novel PKCs, was abolished in Delta NSM cells. Moreover, NSM2 activity was found to play an important role in PM cholesterol transport to the endoplasmic reticulum (ER) and production of cholesteryl esters (CE) there. Most importantly, CE accumulation was essential to sustain human T cell proliferation. Accordingly, inhibition of CE generating enzymes, the cholesterol acetyltransferases ACAT1/SOAT1 and ACAT2/SOAT2, impaired TCR driven expansion of both CD4(+) and CD8(+) T cells. In summary, our study reveals an important role of NSM2 in regulating T cell functions by its multiple effects on PM lipids and cholesterol homeostasis. KW - neutral sphingomyelinase-2 KW - T cell receptor KW - plasma membrane KW - lyso-phospholipids KW - diacylglycerol KW - cholesteryl ester Y1 - 2019 U6 - https://doi.org/10.3389/fcell.2019.00226 SN - 2296-634X VL - 7 PB - Frontiers Research Foundation CY - Lausanne ER - TY - GEN A1 - Breedveld, Merel Cathelijne A1 - Folkertsma, Remco A1 - Eccard, Jana T1 - Rodent mothers increase vigilance behaviour when facing infanticide risk T2 - Postprints der Universität Potsdam Mathematisch- Naturwissenschaftliche Reihe N2 - Infanticide, the killing of unrelated young, is widespread and frequently driven by sexual conflict. especially in mammals with exclusive maternal care, infanticide by males is common and females suffer fitness costs. Recognizing infanticide risk and adjusting offspring protection accordingly should therefore be adaptive in female mammals. Using a small mammal (Myodes glareolus) in outdoor enclosures, we investigated whether lactating mothers adjust offspring protection, and potential mate search behaviour, in response to different infanticide risk levels. We presented the scent of the litter’s sire or of a stranger male near the female’s nest, and observed female nest presence and movement by radiotracking. While both scents simulated a mating opportunity, they represented lower (sire) and higher (stranger) infanticide risk. compared to the sire treatment, females in the stranger treatment left their nest more often, showed increased activity and stayed closer to the nest, suggesting offspring protection from outside the nest through elevated alertness and vigilance. females with larger litters spent more time investigating scents and used more space in the sire but not in the stranger treatment. Thus, current investment size affected odour inspection and resource acquisition under higher risk. Adjusting nest protection and resource acquisition to infanticide risk could allow mothers to elicit appropriate (fitness-saving) counterstrategies, and thus, may be widespread. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 766 KW - vole clethrionomys-glareolus KW - male bank voles KW - maternal aggression KW - reproductive strategies KW - offspring-defense KW - myodes-glareolus KW - predation risk KW - prairie vole KW - recognition KW - costs Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-438074 SN - 1866-8372 IS - 766 ER - TY - JOUR A1 - Breedveld, Merel Cathelijne A1 - Folkertsma, Remco A1 - Eccard, Jana T1 - Rodent mothers increase vigilance behaviour when facing infanticide risk JF - Scientific Reports N2 - Infanticide, the killing of unrelated young, is widespread and frequently driven by sexual conflict. especially in mammals with exclusive maternal care, infanticide by males is common and females suffer fitness costs. Recognizing infanticide risk and adjusting offspring protection accordingly should therefore be adaptive in female mammals. Using a small mammal (Myodes glareolus) in outdoor enclosures, we investigated whether lactating mothers adjust offspring protection, and potential mate search behaviour, in response to different infanticide risk levels. We presented the scent of the litter’s sire or of a stranger male near the female’s nest, and observed female nest presence and movement by radiotracking. While both scents simulated a mating opportunity, they represented lower (sire) and higher (stranger) infanticide risk. compared to the sire treatment, females in the stranger treatment left their nest more often, showed increased activity and stayed closer to the nest, suggesting offspring protection from outside the nest through elevated alertness and vigilance. females with larger litters spent more time investigating scents and used more space in the sire but not in the stranger treatment. Thus, current investment size affected odour inspection and resource acquisition under higher risk. Adjusting nest protection and resource acquisition to infanticide risk could allow mothers to elicit appropriate (fitness-saving) counterstrategies, and thus, may be widespread. KW - vole clethrionomys-glareolus KW - male bank voles KW - maternal aggression KW - reproductive strategies KW - offspring-defense KW - myodes-glareolus KW - predation risk KW - prairie vole KW - recognition KW - costs Y1 - 2019 U6 - https://doi.org/10.1038/s41598-019-48459-9 SN - 2045-2322 VL - 9 PB - Macmillan Publishers Limited, part of Springer Nature CY - London ER - TY - JOUR A1 - Hofman, Maarten P. G. A1 - Hayward, M. W. A1 - Heim, M. A1 - Marchand, P. A1 - Rolandsen, C. M. A1 - Mattisson, Jenny A1 - Urbano, F. A1 - Heurich, M. A1 - Mysterud, A. A1 - Melzheimer, J. A1 - Morellet, N. A1 - Voigt, Ulrich A1 - Allen, B. L. A1 - Gehr, Benedikt A1 - Rouco Zufiaurre, Carlos A1 - Ullmann, Wiebke A1 - Holand, O. A1 - Jorgensen, n H. A1 - Steinheim, G. A1 - Cagnacci, F. A1 - Kroeschel, M. A1 - Kaczensky, P. A1 - Buuveibaatar, B. A1 - Payne, J. C. A1 - Palmegiani, I A1 - Jerina, K. A1 - Kjellander, P. A1 - Johansson, O. A1 - LaPoint, S. A1 - Bayrakcismith, R. A1 - Linnell, J. D. C. A1 - Zaccaroni, M. A1 - Jorge, M. L. S. A1 - Oshima, J. E. F. A1 - Songhurst, A. A1 - Fischer, C. A1 - Mc Bride, R. T. A1 - Thompson, J. J. A1 - Streif, S. A1 - Sandfort, R. A1 - Bonenfant, Christophe A1 - Drouilly, M. A1 - Klapproth, M. A1 - Zinner, Dietmar A1 - Yarnell, Richard A1 - Stronza, A. A1 - Wilmott, L. A1 - Meisingset, E. A1 - Thaker, Maria A1 - Vanak, A. T. A1 - Nicoloso, S. A1 - Graeber, R. A1 - Said, S. A1 - Boudreau, M. R. A1 - Devlin, A. A1 - Hoogesteijn, R. A1 - May-Junior, J. A. A1 - Nifong, J. C. A1 - Odden, J. A1 - Quigley, H. B. A1 - Tortato, F. A1 - Parker, D. M. A1 - Caso, A. A1 - Perrine, J. A1 - Tellaeche, C. A1 - Zieba, F. A1 - Zwijacz-Kozica, T. A1 - Appel, C. L. A1 - Axsom, I A1 - Bean, W. T. A1 - Cristescu, B. A1 - Periquet, S. A1 - Teichman, K. J. A1 - Karpanty, S. A1 - Licoppe, A. A1 - Menges, V A1 - Black, K. A1 - Scheppers, Thomas L. A1 - Schai-Braun, S. C. A1 - Azevedo, F. C. A1 - Lemos, F. G. A1 - Payne, A. A1 - Swanepoel, L. H. A1 - Weckworth, B. A1 - Berger, A. A1 - Bertassoni, Alessandra A1 - McCulloch, G. A1 - Sustr, P. A1 - Athreya, V A1 - Bockmuhl, D. A1 - Casaer, J. A1 - Ekori, A. A1 - Melovski, D. A1 - Richard-Hansen, C. A1 - van de Vyver, D. A1 - Reyna-Hurtado, R. A1 - Robardet, E. A1 - Selva, N. A1 - Sergiel, A. A1 - Farhadinia, M. S. A1 - Sunde, P. A1 - Portas, R. A1 - Ambarli, Hüseyin A1 - Berzins, R. A1 - Kappeler, P. M. A1 - Mann, G. K. A1 - Pyritz, L. A1 - Bissett, C. A1 - Grant, T. A1 - Steinmetz, R. A1 - Swedell, Larissa A1 - Welch, R. J. A1 - Armenteras, D. A1 - Bidder, O. R. A1 - Gonzalez, T. M. A1 - Rosenblatt, A. A1 - Kachel, S. A1 - Balkenhol, N. T1 - Right on track? BT - Performance of satellite telemetry in terrestrial wildlife research JF - PLoS one N2 - Satellite telemetry is an increasingly utilized technology in wildlife research, and current devices can track individual animal movements at unprecedented spatial and temporal resolutions. However, as we enter the golden age of satellite telemetry, we need an in-depth understanding of the main technological, species-specific and environmental factors that determine the success and failure of satellite tracking devices across species and habitats. Here, we assess the relative influence of such factors on the ability of satellite telemetry units to provide the expected amount and quality of data by analyzing data from over 3,000 devices deployed on 62 terrestrial species in 167 projects worldwide. We evaluate the success rate in obtaining GPS fixes as well as in transferring these fixes to the user and we evaluate failure rates. Average fix success and data transfer rates were high and were generally better predicted by species and unit characteristics, while environmental characteristics influenced the variability of performance. However, 48% of the unit deployments ended prematurely, half of them due to technical failure. Nonetheless, this study shows that the performance of satellite telemetry applications has shown improvements over time, and based on our findings, we provide further recommendations for both users and manufacturers. Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0216223 SN - 1932-6203 VL - 14 IS - 5 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Gendre, Delphine A1 - Baral, Anirban A1 - Dang, Xie A1 - Esnay, Nicolas A1 - Boutte, Yohann A1 - Stanislas, Thomas A1 - Vain, Thomas A1 - Claverol, Stephane A1 - Gustavsson, Anna A1 - Lin, Deshu A1 - Grebe, Markus A1 - Bhalerao, Rishikesh P. T1 - Rho-of-plant activated root hair formation requires Arabidopsis YIP4a/b gene function JF - Development : Company of Biologists N2 - Root hairs are protrusions from root epidermal cells with crucial roles in plant soil interactions. Although much is known about patterning, polarity and tip growth of root hairs, contributions of membrane trafficking to hair initiation remain poorly understood. Here, we demonstrate that the trans-Golgi network-localized YPT-INTERACTING PROTEIN 4a and YPT-INTERACTING PROTEIN 4b (YIP4a/b) contribute to activation and plasma membrane accumulation of Rho-of-plant (ROP) small GTPases during hair initiation, identifying YIP4a/b as central trafficking components in ROP-dependent root hair formation. KW - ROP KW - YIP KW - Root hair KW - Secretion KW - Trans-Golgi network Y1 - 2019 U6 - https://doi.org/10.1242/dev.168559 SN - 0950-1991 SN - 1477-9129 VL - 146 IS - 5 PB - The Company of Biologists CY - Cambridge ER - TY - JOUR A1 - Coraman, Emrah A1 - Dietz, Christian A1 - Hempel, Elisabeth A1 - Ghazaryan, Astghik A1 - Levin, Eran A1 - Presetnik, Primoz A1 - Zagmajster, Maja A1 - Mayer, Frieder T1 - Reticulate evolutionary history of a Western Palaearctic Bat Complex explained by multiple mtDNA introgressions in secondary contacts JF - Journal of biogeography N2 - Aim There is an increasing evidence showing that species within various taxonomic groups have reticulate evolutionary histories with several cases of introgression events. Investigating the phylogeography of species complexes can provide insight into these introgressions, and when and where these hybridizations occurred. In this study, we investigate the biogeography of a widely distributed Western Palaearctic bat species complex, namely Myotis nattereri sensu lato. This complex exhibits high genetic diversity and in its western distribution range is composed of deeply diverged genetical lineages. However, little is known about the genetic structure of the eastern populations. We also infer the conservation and taxonomical implications of the identified genetic divergences. Taxon Myotis nattereri sensu lato including M. schaubi. Location Western Palaearctic. Methods We analysed 161 specimens collected from 67 locations and sequenced one mitochondrial and four nuclear DNA markers, and combined these with the available GenBank sequences. We used haplotype networks, PCA, t-SNE and Bayesian clustering algorithms to investigate the population structure and Bayesian trees to infer the phylogenetic relationship of the lineages. Results We identified deeply divergent genetical lineages. In some cases, nuclear and mitochondrial markers were discordant, which we interpret are caused by hybridization between lineages. We identified three such introgression events. These introgressions occurred when spatially separated lineages came into contact after range expansions. Based on the genetic distinction of the identified lineages, we suggest a revision in the taxonomy of this species group with two possible new species: M. hoveli and M. tschuliensis. Main conclusions Our findings suggest that the M. nattereri complex has a reticulate evolutionary history with multiple cases of hybridizations between some of the identified lineages. KW - cryptic species KW - glacial refugia KW - hybridization KW - introgression KW - range expansions KW - the Caucasus Y1 - 2019 U6 - https://doi.org/10.1111/jbi.13509 SN - 0305-0270 SN - 1365-2699 VL - 46 IS - 2 SP - 343 EP - 354 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Jacques, Mauricio Tavares A1 - Bornhorst, Julia A1 - Soares, Marcell Valandro A1 - Schwerdtle, Tanja A1 - Garcia, Solange A1 - Avila, Daiana Silva T1 - Reprotoxicity of glyphosate-based formulation in Caenorhabditis elegans is not due to the active ingredient only JF - Environmental pollution N2 - Pesticides guarantee us high productivity in agriculture, but the long-term costs have proved too high. Acute and chronic intoxication of humans and animals, contamination of soil, water and food are the consequences of the current demand and sales of these products. In addition, pesticides such as glyphosate are sold in commercial formulations which have inert ingredients, substances with unknown composition and proportion. Facing this scenario, toxicological studies that investigate the interaction between the active principle and the inert ingredients are necessary. The following work proposed comparative toxicology studies between glyphosate and its commercial formulation using the alternative model Caenorhabditis elegans. Worms were exposed to different concentrations of the active ingredient (glyphosate in monoisopropylamine salt) and its commercial formulation. Reproductive capacity was evaluated through brood size, morphological analysis of oocytes and through the MD701 strain (bcIs39), which allows the visualization of germ cells in apoptosis. In addition, the metal composition in the commercial formulation was analyzed by ICP-MS. Only the commercial formulation of glyphosate showed significant negative effects on brood size, body length, oocyte size, and the number of apoptotic cells. Metal analysis showed the presence of Hg, Fe, Mn, Cu, Zn, As, Cd and Pb in the commercial formulation, which did not cause reprotoxicity at the concentrations found. However, metals can bio-accumulate in soil and water and cause environmental impacts. Finally, we demonstrated that the addition of inert ingredients increased the toxic profile of the active ingredient glyphosate in C. elegans, which reinforces the need of components description in the product labels. (C) 2019 Elsevier Ltd. All rights reserved. KW - Glyphosate KW - Inert ingredients KW - Reproduction KW - Oocytes KW - Development KW - Metals Y1 - 2019 U6 - https://doi.org/10.1016/j.envpol.2019.06.099 SN - 0269-7491 SN - 1873-6424 VL - 252 SP - 1854 EP - 1862 PB - Elsevier CY - Oxford ER - TY - THES A1 - Nguyen, Manh Duy Linh T1 - Reproduction, development and reproductive isolation barriers of the mormyrid fish (genus Campylomormyrus, Teleostei) T1 - Fortpflanzung, Entwicklung und reproduktive Isolationsbarrieren von Mormyriden (Gattung Campylomormyrus, Teleostei) N2 - Weakly electric mormyrid fish comprise about 200 species. 15 species of the genus Campylomormyrus have been described. These are very diverse concerning the trunk-like snout and the shape and duration of the electric organ discharge (EOD) and the anatomy of the electric organ. In this dissertation data on the reproduction in captivity of four species and on the ontogeny of the EOD and the EO of three species are presented. Reproduction of the four species C. compressirostris, C. rhynchophorus, C. tshokwe and C. numenius: Cyclical reproduction was provoked by changing only water conductivity (C): decreasing C led to gonadal recrudescence, an increase induced gonad regression. Data on the reproduction and development of three species are presented (in C. numenius gonad development could only be achieved in males). Agonistic behavior in the C. tshokwe pair forced us to divide the breeding tank; therefore, only ovipositions occurred. However, injection of an artificial GnRH hormone allowed us to obtain ripe eggs and sperm and to perform successful artificial reproduction. All three species (C. compressirostris, C. rhynchophorus, C. tshokwe) are indeterminate fractional spawners. Spawnings/ovipositions occurred during the second half of the night; no parental care was observed; no special spawning substrates were necessary. C. compressirostris successfully spawned in breeding groups, C. rhynchophorus as pair. Spawning intervals ranged from 6 to 66 days in C. rhynchophorus, 10–75 days in C. tshokwe, and 18 days in C. compressirostris (calculated values). Fecundities (eggs per fractional spawning) ranged from 70 to 1570 eggs in C. rhynchophorus, 100–1192 in C. tshokwe, and 38–246 in C. compressirostris. All three species produce yolky, slightly sticky eggs. Egg diameter ranges from 2.3–3.0 mm. Hatching occurred on day 3, feeding started on day 11. Transition from larval to juvenile stage occurred at around 20 mm total length (TL). At this size C. rhynchophorus developed a higher body than the two other species and differences between the species in the melanin pigmentation of the unpaired fins occurred. Between 32 and 35 mm TL the upper and lower jaws developed. C. compressirostris and C. tamandua are similar in morphology and both produce short EODs of ca. 150-200 μs duration. Both species reproduce easily in captivity. We tried to obtain natural hybrids in two breeding groups, 1) four males of C. compressirostris and three females of C. tamandua and 2) six females of C. compressirostris and four males of C. tamandua. In both combinations several times oviposition occurred, however, we never found fertilized eggs. In subsequent experiments, not described here, we obtained hybrids between these two species by means of artificial reproduction. Ontogeny of the EOD and the EO: The Campylomormyrus species are very diverse both concerning the shape and the duration of their EODs. There are species with very short EODs, e.g. C. compressirostris duration, a species with an EOD length of about 4-8 ms duration (C. tshokwe) and species with very long EODs of about 25 ms duration (e.g. C. rhynchophorus). Due to the successful breeding of the three species in captivity, we were able to investigate in detail the ontogeny of the EOD. Larvae of the three species C. compressirostris, C. tshokwe and C. rhynchophorus first produce a biphasic larval EOD typical for these small larvae. The first activity of the adult electric organ in the caudal peduncle is a biphasic juvenile EOD. Juvenile C. compressirostris and C. tshokwe start out with a short biphasic EOD of about 160 – 200 μs duration at sizes between 25 mm (C. compressirostris) and 37 mm (C. tshokwe). Adult C. compressirostris show an EOD identical to that of the juvenile. In C. tshokwe, the juvenile EOD changes continuously during development both concerning duration, amplitude increase and shape. 18 cm long C. tshokwe still do not yet produce an EOD typical for the adult fish. Juveniles of C. rhynchophorus produce at 33 mm total length a juvenile biphasic EOD, however, of longer duration (about 640 μs) than the two species mentioned above. This juvenile EOD changes continuously both in form, amplitude increase and duration with growth until the adult EOD waveform appears at about 15 cm body length. In juveniles about seven cm long the triphasic feature of the EOD starts to develop due to the appearance of a second head positive phase. Specific EOD stages are produced in relation to size and not to age. Individual differences in the EOD both concerning shape and duration are very small. The basic anatomy of the electrocytes is very similar in all three species: the main stalk which receives the innervation, is located at the caudal face of the electrocyte. Membrane penetrations of the stalks do not occur. However, there are differences in the fine structure of the electrocytes in the three species. Papillae, proliferations of the membrane, which increase the surface area of the electrocyte and are thought to incrase the EOD-duration, are only found in C. tshokwe and C. rhynchophorus. In these two species in addition, holes develop in the electrocytes during ontogeny. This might also have an impact on EOD duration. N2 - Von den mehr als 200 Arten der schwach elektrischen Nilhechte gehören 15 zur Gattung Campylomormyrus. Diese spezialisierten Fische besitzen eine rüsselartige Schnauze. Auch produzieren manche Arten relativ kurze elektrische Entladungen (EODs) von mehreren hundert µs Dauer, andere ungewöhnlich lange EODs von bis zu 25 ms Dauer. Es werden Daten zur Reproduktion von vier Arten vorgestellt, um das Wissen über die Fortpflanzungs-biologie der Nilhechte zu erweitern und zum ersten Mal detaillierte Daten zur Ontogenese der elektrischen Organe (EO) und EODs von Arten mit extrem langen EODs zu beschreiben. Bei C. compressirostris, C. rhynchophorus, C. tshokwe und C. numenius konnte die Gonadenreifung durch Absenkung der elektrischen Leitfähigkeit des Wassers ausgelöst werden. Danach laichten C. compressirostris und C. rhynchophorus regelmäßig ab; bei C. tshokwe konnte eine Vermehrung mit Hilfe einer künstlichen Vermehrung erreicht werden; bei C. numenius konnte nur bei den Männchen eine Gonadenreifung ausgelöst werden. Die drei Arten C. compressirostris, C. rhynchophorus und C. tshokwe zeigen folgende reproduktiven Merkmale: das Ablaichen erfolgt in der zweiten Nachthälfte, die Eizahlen liegen bei mehreren Hundert pro Ablaichen, die Ablaichintervalle liegen bei wenigen Wochen. Embryonen schlüpfen nach drei Tagen, die exogene Nahrungsaufnahme beginnt am Tag 11. Es wurde versucht, natürliche Hybriden zwischen den Arten C. compressirostris und C. tamandua zu erhalten. Es kam zwar zur Abgabe von Eiern, diese waren aber nie befruchtet. Die Ontogenese der EOD zeigte, dass die Entladung bei allen drei untersuchten Arten mit einer biphasischen Juvenilentladung von ca. 200 µs (C. compressirostris, C. tshokwe) bzw. ca. 600 µs Dauer (C. rhynchophorus) beginnt. Diese Entladung verändert sich im Verlauf der Ontogenese bei C. compressirostris nicht mehr, bei den beiden anderen Arten kommt es zu einer kontinuierlichen Veränderung bezüglich Form und Dauer bis hin zu der Adult-Entladung. Papillen, Oberflächenvergrößerungen der elektrischen Zellen, könnten eine Erklärung für die längere Entladung bei C. tshokwe und C. rhynchophorus sein. KW - fish KW - weakly electric fish KW - tropical freshwater fish KW - Fisch KW - schwach elektrische Fische KW - tropische Süßwasser Fische Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-437197 ER - TY - JOUR A1 - Martin, Craig E. A1 - Herppich, Werner B. A1 - Roscher, Yvonne A1 - Burkart, Michael T1 - Relationships between leaf succulence and Crassulacean acid metabolism in the genus Sansevieria (Asparagaceae) JF - Flora : morphology, distribution, functional ecology of plants N2 - Relationships between different measures of succulence and Crassulacean acid metabolism (CAM; defined here as nocturnal increases in tissue acidity) were investigated in leaves of ten species of Sansevieria under greenhouse conditions. CAM was found in seven of the ten species investigated, and CAM correlated negatively with leaf thickness and leaf hydrenchyma/chlorenchyma ratio. Similarly, CAM correlated negatively with leaf water content, but only when expressed on a fresh mass basis. CAM was not correlated with "mesophyll succulence", but weakly with leaf chlorophyll concentration. These results indicate that CAM is associated more with "all-cell succulence" and not with the amount of leaf hydrenchyma in the genus Sansevieria. The findings of this study emphasize the importance of defining the nature of "leaf succulence" in studies of photosynthetic pathways and leaf morphology. Evidence is also provided that CAM and succulence arose multiple times in the genus Sansevieria. KW - Anatomy KW - CAM KW - Chlorenchyma KW - Chlorophyll KW - Hydrenchyma KW - Morphology KW - Phylogeny Y1 - 2019 U6 - https://doi.org/10.1016/j.flora.2019.151489 SN - 0367-2530 SN - 1618-0585 VL - 261 PB - Elsevier CY - München ER - TY - JOUR A1 - Dong, Yang A1 - Jantzen, Friederike A1 - Stacey, Nicola A1 - Langowski, Lukasz A1 - Moubayidin, Laila A1 - Simura, Jan A1 - Ljung, Karin A1 - Ostergaard, Lars T1 - Regulatory Diversification of INDEHISCENT in the Capsella Genus Directs Variation in Fruit Morphology JF - Current biology N2 - Evolution of gene-regulatory sequences is considered the primary driver of morphological variation [1-3]. In animals, the diversity of body plans between distantly related phyla is due to the differential expression patterns of conserved "toolkit' genes [4]. In plants, variation in expression domains similarly underlie most of the reported diversity of organ shape both in natural evolution and in the domestication of crops [5-9]. The heart-shaped fruit from members of the Capsella genus is a morphological novelty that has evolved after Capsella diverged from Arabidopsis similar to 8 mya [10]. Comparative studies of fruit growth in Capsella and Arabidopsis revealed that the difference in shape is caused by local control of anisotropic growth [11]. Here, we show that sequence variation in regulatory domains of the fruit-tissue identity gene, INDEHISCENT (IND), is responsible for expansion of its expression domain in the heart-shaped fruits from Capsella rubella. We demonstrate that expression of this CrIND gene in the apical part of the valves in Capsella contributes to the heart-shaped appearance. While studies on morphological diversity have revealed the importance of cis-regulatory sequence evolution, few examples exist where the downstream effects of such variation have been characterized in detail. We describe here how CrIND exerts its function on Capsella fruit shape by binding sequence elements of auxin biosynthesis genes to activate their expression and ensure auxin accumulation into highly localized maxima in the fruit valves. Thus, our data provide a direct link between changes in expression pattern and altered hormone homeostasis in the evolution of morphological novelty. Y1 - 2019 U6 - https://doi.org/10.1016/j.cub.2019.01.057 SN - 0960-9822 SN - 1879-0445 VL - 29 IS - 6 SP - 1038 EP - 1046 PB - Cell Press CY - Cambridge ER - TY - THES A1 - Schumacher, Julia T1 - Regulation and function of STERILE APETALA in Arabidopsis flower development N2 - STERILE APETALA (SAP) is known to be an essential regulator of flower development for over 20 years. Loss of SAP function in the model plant Arabidopsis thaliana is associated with a reduction of floral organ number, size and fertility. In accordance with the function of SAP during early flower development, its spatial expression in flowers is confined to meristematic stages and to developing ovules. However, to date, despite extensive research, the molecular function of SAP and the regulation of its spatio-temporal expression still remain elusive. In this work, amino acid sequence analysis and homology modeling revealed that SAP belongs to the rare class of plant F-box proteins with C-terminal WD40 repeats. In opisthokonts, this type of F-box proteins constitutes the substrate binding subunit of SCF complexes, which catalyze the ubiquitination of proteins to initiate their proteasomal degradation. With LC-MS/MS-based protein complex isolation, the interaction of SAP with major SCF complex subunits was confirmed. Additionally, candidate substrate proteins, such as the growth repressor PEAPOD 1 and 2 (PPD1/2), could be revealed during early stages of flower development. Also INDOLE-3-BUTYRIC ACID RESPONSE 5 (IBR5) was identified among putative interactors. Genetic analyses indicated that, different from substrate proteins, IBR5 is required for SAP function. Protein complex isolation together with transcriptome profiling emphasized that the SCFSAP complex integrates multiple biological processes, such as proliferative growth, vascular development, hormonal signaling and reproduction. Phenotypic analysis of sap mutant and SAP overexpressing plants positively correlated SAP function with plant growth during reproductive and vegetative development. Furthermore, to elaborate on the transcriptional regulation of SAP, publicly available ChIP-seq data of key floral homeotic proteins were reanalyzed. Here, it was shown that the MADS-domain transcription factors APETALA 1 (AP1), APETALA 3 (AP3), PISTILLATA (PI), AGAMOUS (AG) and SEPALLATA 3 (SEP3) bind to the SAP locus, which indicates that SAP is expressed in a floral organ-specific manner. Reporter gene analyses in combination with CRISPR/Cas9-mediated deletion of putative regulatory regions further demonstrated that the intron contains major regulatory elements of SAP in Arabidopsis thaliana. In conclusion, these data indicate that SAP is a pleiotropic developmental regulator that acts through tissue-specific destabilization of proteins. The presumed transcriptional regulation of SAP by the floral MADS-domain transcription factors could provide a missing link between the specification of floral organ identity and floral organ growth pathways. KW - STERILE APETALA KW - SAP KW - flower development KW - organ size KW - F-box KW - WD40 KW - SCF complex KW - ubiquitin KW - proteasomal degradation KW - MADS Y1 - 2019 ER - TY - CHAP A1 - Duffus, Benjamin R. A1 - Hartmann, Tobias A1 - Teutloff, Christian A1 - Leimkühler, Silke T1 - Refining catalytic insights toward the chemical mechanism of R. capsulatus formate dehydrogenase via EPR spectroscopy T2 - Abstracts of papers : joint conference / The Chemical Institute of Cananda, CIC, American Chemical Society, ACS Y1 - 2019 SN - 0065-7727 VL - 257 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Reimann, Anna A1 - Beyer, Rudolf A1 - Mumm, Rebekka A1 - Scheffler, Christiane T1 - Reference tables with centiles of limb to body height ratios of healthy human adults for assessing potential thalidomide embryopathy JF - Journal of biological and clinical anthropology : Anthropologischer Anzeiger ; Mitteilungsorgan der Gesellschaft für Anthropologie N2 - Background: Over 60 years ago the biggest drug catastrophe in Germany took place. The drug thalidomide, sold by the German pharmaceutical company Chemie Grunenthal GmbH starting in 1957 under the name "Contergan", caused severe birth defects in newborns. Chemie Grunenthal withdraw Contergan in 1961. Until nearly 30 years later in 1988 there were already over 10.000 children born with severe birth defects (e.g. dysmelia, amelia, congenital heart defect). Due to the high variability of the birth defects caused by thalidomide, later called thalidomide embryopathy, there is still no detailed information about the proportions of limbs. Aim: The aim is to develop reference centiles for limb measurements of men and women aged 19-70 years old. Method: For the calculation, data of healthy men and women (m = 2984, f = 2838) from former East Germany were used and centiles using the LMS-method were developed. Results: Centile tables for arm and leg length of men and women are presented in the results. The variability is small due to a homogeneous distribution of the measurements. A test with randomly chosen patient data shows that women under 171 cm stature and men under 180 cm stature can be assessed correctly. A severe shortening of limbs can be detected with this method. KW - thalidomide embryopathy KW - contergan KW - anthropometry KW - body proportions Y1 - 2019 U6 - https://doi.org/10.1127/anthranz/2019/0981 SN - 0003-5548 VL - 76 IS - 5 SP - 391 EP - 400 PB - Schweizerbart CY - Stuttgart ER - TY - JOUR A1 - Numberger, Daniela A1 - Dreier, Carole A1 - Vullioud, Colin A1 - Gabriel, Gülsah A1 - Greenwood, Alex D. A1 - Grossart, Hans-Peter T1 - Recovery of influenza a viruses from lake water and sediments by experimental inoculation JF - PLoS one N2 - Influenza A viruses (IAV) are zoonotic pathogens relevant to human, domestic animal and wildlife health. Many avian IAVs are transmitted among waterfowl via a faecal-oral-route. Therefore, environmental water where waterfowl congregate may play an important role in the ecology and epidemiology of avian IAV. Water and sediment may sustain and transmit virus among individuals or species. It is unclear at what concentrations waterborne viruses are infectious or remain detectable. To address this, we performed lake water and sediment dilution experiments with varying concentrations or infectious doses of four IAV strains from seal, turkey, duck and gull. To test for infectivity of the IAV strains in a concentration dependent manner, we applied cultivation to specific pathogen free (SPF) embryonated chicken eggs and Madin-Darby Canine Kidney (MDCK) cells. IAV recovery was more effective from embryonated chicken eggs than MDCK cells for freshwater lake dilutions, whereas, MDCK cells were more effective for viral recovery from sediment samples. Low infectious dose (1 PFU/200 mu L) was sufficient in most cases to detect and recover IAV from lake water dilutions. Sediment required higher initial infectious doses (>= 100 PFU/200 mu L). Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0216880 SN - 1932-6203 VL - 14 IS - 5 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Feiner, Rebecca Christine A1 - Teschner, Julian A1 - Teschner, Kathrin E. A1 - Radukic, Marco T. A1 - Baumann, Tobias A1 - Hagen, Sven A1 - Hannappel, Yvonne A1 - Biere, Niklas A1 - Anselmetti, Dario A1 - Arndt, Katja Maren A1 - Müller, Kristian Mark T1 - rAAV Engineering for Capsid-Protein Enzyme Insertions and Mosaicism Reveals Resilience to Mutational, Structural and Thermal Perturbations JF - International journal of molecular sciences N2 - Recombinant adeno-associated viruses (rAAV) provide outstanding options for customization and superior capabilities for gene therapy. To access their full potential, facile genetic manipulation is pivotal, including capsid loop modifications. Therefore, we assessed capsid tolerance to modifications of the structural VP proteins in terms of stability and plasticity. Flexible glycine-serine linkers of increasing sizes were, at the genetic level, introduced into the 587 loop region of the VP proteins of serotype 2, the best studied AAV representative. Analyses of biological function and thermal stability with respect to genome release of viral particles revealed structural plasticity. In addition, insertion of the 29 kDa enzyme beta-lactamase into the loop region was tested with a complete or a mosaic modification setting. For the mosaic approach, investigation of VP2 trans expression revealed that a Kozak sequence was required to prevent leaky scanning. Surprisingly, even the full capsid modification with beta-lactamase allowed for the assembly of capsids with a concomitant increase in size. Enzyme activity assays revealed lactamase functionality for both rAAV variants, which demonstrates the structural robustness of this platform technology. KW - adeno-associated-virus KW - beta-lactamase KW - inverted terminal repeat (ITR) KW - loop modification KW - capsid stability Y1 - 2019 U6 - https://doi.org/10.3390/ijms20225702 SN - 1422-0067 VL - 20 IS - 22 PB - MDPI CY - Basel ER - TY - GEN A1 - Luckner, Madlen A1 - Dunsing, Valentin A1 - Drüke, Markus A1 - Zuehlke, B. A1 - Petazzi, Roberto Arturo A1 - Chiantia, Salvatore A1 - Herrmann, A. T1 - Quantifying protein oligomerization directly in living cells BT - a systematic comparison of fluorescent proteins and application to Influenza A virus infection T2 - European biophysics journal : with biophysics letters ; an international journal of biophysics Y1 - 2019 SN - 0175-7571 SN - 1432-1017 VL - 48 SP - S183 EP - S183 PB - Springer CY - New York ER - TY - THES A1 - Küçükgöze, Gökhan T1 - Purification and characterization of mouse aldehyde oxidases T1 - Aufreinigung und Charakterisierung von Maus-Aldehyd-Oxidasen N2 - Mouse aldehyde oxidases (mAOXs) have a homodimeric structure and belong to xanthine oxidase family of molybdo-flavoenzymes. In general, each dimer is characterized by three subdomains: a 20 kDa N-terminal 2x[2Fe2S] cluster containing domain, a 40 kDa central FAD-containing domain and an 85 kDa C-terminal molybdenum cofactor (Moco) containing domain. Aldehyde oxidases have a broad substrate specificity including the oxidation of different aldehydes and N-heterocyclic compounds. AOX enzymes are present in mainly all eukaryotes. Four different homologs of AOX were identified to be present with varying numbers among species and rodents like mice and rats contain the highest number of AOX isoenzymes. There are four identified homologs in mouse named mAOX1, mAOX3, mAOX2, and mAOX4. The AOX homologs in mice are expressed in a tissue-specific manner. Expression of mAOX1 and mAOX3 are almost superimposable and predominantly synthesized in liver, lung, and testis. The richest source of mAOX4 is the Harderian gland, which is found within the eye's orbit in tetrapods. Expression of mAOX2 is strictly restricted to the Bowman’s gland, the main secretory organ of the nasal mucosa. In this study, the four catalytically active mAOX enzymes were expressed in a heterologous expression system in Escherichia coli and purified in a catalytically active form. Thirty different structurally related aromatic, aliphatic and N-heterocyclic compounds were used as substrates, and the kinetic parameters of all four mAOX enzymes were directly compared. The results showed that all enzymes can catalyze a broad range of substrates. Generally, no major differences between mAOX1, mAOX3 and mAOX2 were identified and the substrate specificity of mAOX1, mAOX3, and mAOX2 was broader compared to that of mAOX4 since mAOX4 showed no activity with substrates like methoxy-benzaldehydes, phenanthridine, N1-methyl-nicotinamide, and cinnamaldehyde and 4-(dimethylamino)cinnamaldehyde. We investigated differences at the flavin site of the mAOX enzymes by measuring the ability of the four mAOX enzymes to oxidize NADH in the absence of oxygen. NADH was able to reduce only mAOX3. The four mouse AOXs are also characterized by quantitative differences in their ability to produce superoxide radicals. mAOX2 is the enzyme generating the largest rate of superoxide radicals of around 40% in relation to moles of substrate converted and it is followed by mAOX1 with a ratio of 30%. To understand the factors that contribute to the substrate specificity of mAOX4, site-directed mutagenesis was applied to substitute amino acids in the substrate-binding funnel by the ones present in mAOX1, mAOX3, and mAOX2. The amino acids Val1016, Ile1018 and Met1088 were selected as targets. An increase in activity was obtained by the amino acid exchange M1088V in the active site identified to be specific for mAOX4, to the amino acid identified in mAOX3. N2 - Mouse aldehyde oxidases (mAOXs) have a homodimeric structure and belong to xanthine oxidase family of molybdo-flavoenzymes. In general, each dimer is characterized by three subdomains: a 20 kDa N-terminal 2x[2Fe2S] cluster containing domain, a 40 kDa central FAD-containing domain and an 85 kDa C-terminal molybdenum cofactor (Moco) containing domain. Aldehyde oxidases have a broad substrate specificity including the oxidation of different aldehydes and N-heterocyclic compounds. AOX enzymes are present in mainly all eukaryotes. Four different homologs of AOX were identified to be present with varying numbers among species and rodents like mice and rats contain the highest number of AOX isoenzymes. There are four identified homologs in mouse named mAOX1, mAOX3, mAOX2, and mAOX4. The AOX homologs in mice are expressed in a tissue-specific manner. Expression of mAOX1 and mAOX3 are almost superimposable and predominantly synthesized in liver, lung, and testis. The richest source of mAOX4 is the Harderian gland, which is found within the eye's orbit in tetrapods. Expression of mAOX2 is strictly restricted to the Bowman’s gland, the main secretory organ of the nasal mucosa. In this study, the four catalytically active mAOX enzymes were expressed in a heterologous expression system in Escherichia coli and purified in a catalytically active form. Thirty different structurally related aromatic, aliphatic and N-heterocyclic compounds were used as substrates, and the kinetic parameters of all four mAOX enzymes were directly compared. The results showed that all enzymes can catalyze a broad range of substrates. Generally, no major differences between mAOX1, mAOX3 and mAOX2 were identified and the substrate specificity of mAOX1, mAOX3, and mAOX2 was broader compared to that of mAOX4 since mAOX4 showed no activity with substrates like methoxy-benzaldehydes, phenanthridine, N1-methyl-nicotinamide, and cinnamaldehyde and 4-(dimethylamino)cinnamaldehyde. We investigated differences at the flavin site of the mAOX enzymes by measuring the ability of the four mAOX enzymes to oxidize NADH in the absence of oxygen. NADH was able to reduce only mAOX3. The four mouse AOXs are also characterized by quantitative differences in their ability to produce superoxide radicals. mAOX2 is the enzyme generating the largest rate of superoxide radicals of around 40% in relation to moles of substrate converted and it is followed by mAOX1 with a ratio of 30%. To understand the factors that contribute to the substrate specificity of mAOX4, site-directed mutagenesis was applied to substitute amino acids in the substrate-binding funnel by the ones present in mAOX1, mAOX3, and mAOX2. The amino acids Val1016, Ile1018 and Met1088 were selected as targets. An increase in activity was obtained by the amino acid exchange M1088V in the active site identified to be specific for mAOX4, to the amino acid identified in mAOX3. KW - aldehyde oxidase KW - drug metabolism KW - molybdenum cofactor KW - enzyme isoforms KW - enzyme kinetics KW - Aldehyd-oxidase KW - Metabolismus von Medikamenten KW - Molybdänkofaktor KW - Isoenzyme KW - Enzymkinetik Y1 - 2019 ER - TY - JOUR A1 - Dunsing, Valentin A1 - Irmscher, Tobias A1 - Barbirz, Stefanie A1 - Chiantia, Salvatore T1 - Purely Polysaccharide-Based Biofilm Matrix Provides Size-Selective Diffusion Barriers for Nanoparticles and Bacteriophages JF - Biomacromolecules : an interdisciplinary journal focused at the interface of polymer science and the biological sciences N2 - Biofilms are complex mixtures of proteins, DNA, and polysaccharides surrounding bacterial communities as protective barriers that can be biochemically modified during the bacterial life cycle. However, their compositional heterogeneity impedes a precise analysis of the contributions of individual matrix components to the biofilm structural organization. To investigate the structural properties of glycan-based biofilms, we analyzed the diffusion dynamics of nanometer-sized objects in matrices of the megadalton-sized anionic polysaccharide, stewartan, the major biofilm component of the plant pathogen, Pantoea stewartii. Fluorescence correlation spectroscopy and single-particle tracking of nanobeads and bacteriophages indicated notable subdiffusive dynamics dependent on probe size and stewartan concentration, in contrast to free diffusion of small molecules. Stewartan enzymatic depolymerization by bacteriophage tailspike proteins rapidly restored unhindered diffusion. We, thus, hypothesize that the glycan polymer stewartan determines the major physicochemical properties of the biofilm, which acts as a selective diffusion barrier for nanometer-sized objects and can be controlled by enzymes. Y1 - 2019 U6 - https://doi.org/10.1021/acs.biomac.9b00938 SN - 1525-7797 SN - 1526-4602 VL - 20 IS - 10 SP - 3842 EP - 3854 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Heim, Ramona J. A1 - Hölzel, Norbert A1 - Heinken, Thilo A1 - Kamp, Johannes A1 - Thomas, Alexander A1 - Darman, Galina F. A1 - Smirenski, Sergei M. A1 - Heim, Wieland T1 - Post-burn and long-term fire effects on plants and birds in floodplain wetlands of the Russian Far East JF - Biodiversity and conservation N2 - Wildfires affect biodiversity at multiple levels. While vegetation is directly changed by fire events, animals are often indirectly affected through changes in habitat and food availability. Globally, fire frequency and the extent of fires are predicted to increase in the future. The impact of fire on the biodiversity of temperate wetlands has gained little attention so far. We compared species richness and abundance of plants and birds in burnt and unburnt areas in the Amur floodplain/Russian Far East in the year of fire and 1 year after. We also analysed vegetation recovery in relation to time since fire over a period of 18 years. Plant species richness was higher in burnt compared to unburnt plots in the year of the fire, but not in the year after. This suggests that fire has a positive short-term effect on plant diversity. Bird species richness and abundance were lower on burnt compared to unburnt plots in the year of the fire, but not in the year after. Over a period of 18 years, high fire frequency led to an increase in herb cover and a decrease in grass cover. We show that the effects on biodiversity are taxon- and species-specific. Fire management strategies in temperate wetlands should consider fire frequency as a key driving force of vegetation structure, with carry-over effects on higher trophic levels. Designing fire refuges, i.e., areas that do not burn annually, might locally be necessary to maintain high species richness. KW - Disturbance KW - Bird species richness KW - Vegetation structure KW - Fire frequency KW - Amur River Y1 - 2019 U6 - https://doi.org/10.1007/s10531-019-01746-3 SN - 0960-3115 SN - 1572-9710 VL - 28 IS - 6 SP - 1611 EP - 1628 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Luis Horreo, Jose A1 - Luisa Pelaez, Maria A1 - Breedveld, Merel Cathelijne A1 - Suarez, Teresa A1 - Urieta, Maria A1 - Fitze, Patrick S. T1 - Population structure of the oviparous South-West European common lizard JF - European journal of wildlife research N2 - Gene flow is an important factor determining the evolution of a species, since it directly affects population structure and species’ adaptation. Here, we investigated population structure, population history, and migration among populations covering the entire distribution of the geographically isolated South-West European common lizard (Zootoca vivipara louislantzi) using 34 newly developed polymorphic microsatellite markers. The analyses unravelled the presence of isolation by distance, inbreeding, recent bottlenecks, genetic differentiation, and low levels of migration among most populations, suggesting that Z. vivipara louislantzi is threatened. The results point to discontinuous populations and are in line with physical barriers hindering longitudinal migration south to the central Pyrenean cordillera and latitudinal migration in the central Pyrenees. In contrast, evidence for longitudinal migration exists from the lowlands north to the central Pyrenean cordillera and the Cantabrian Mountains. The locations of the populations south to the central Pyrenean cordillera were identified as the first to be affected by global warming; thus, management actions aimed at avoiding population declines should start in this area. KW - Climate change KW - Conservation KW - First-generation migrant KW - gene flow KW - IBD KW - Zootoca vivipara Y1 - 2019 U6 - https://doi.org/10.1007/s10344-018-1242-6 SN - 1612-4642 SN - 1439-0574 VL - 65 IS - 1 PB - Springer CY - New York ER - TY - JOUR A1 - Kunde, Miriam N. A1 - Martins, Renata Filipa A1 - Premier, Joe A1 - Fickel, Jörns A1 - Förster, Daniel W. T1 - Population and landscape genetic analysis of the Malayan sun bear Helarctos malayanus JF - Conservation genetics N2 - Conservation genetics can provide data needed by conservation practitioners for their decisions regarding the management of vulnerable or endangered species, such as the sun bear Helarctos malayanus. Throughout its range, the sun bear is threatened by loss and fragmentation of its habitat and the illegal trade of both live bears and bear parts. Sharply declining population numbers and population sizes, and a lack of natural dispersal between populations all threaten the genetic diversity of the remaining populations of this species. In this first population genetics study of sun bears using microsatellite markers, we analyzed 68 sun bear samples from Cambodia to investigate population structure and genetic diversity. We found evidence for two genetically distinct populations in the West and East of Cambodia. Ongoing or recent gene flow between these populations does not appear sufficient to alleviate loss of diversity in these populations, one of which (West Cambodia) is characterized by significant inbreeding. We were able to assign 85% of sun bears of unknown origin to one of the two populations with high confidence (assignment probability >= 85%), providing valuable information for future bear reintroduction programs. Further, our results suggest that developed land (mostly agricultural mosaics) acts as a barrier to gene flow for sun bears in Cambodia. We highlight that regional sun bear conservation action plans should consider promoting population connectivity and enforcing wildlife protection of this threatened species. KW - Sun bear KW - Helarctos malayanus KW - Microsatellite KW - Population genetics Y1 - 2019 U6 - https://doi.org/10.1007/s10592-019-01233-w SN - 1566-0621 SN - 1572-9737 VL - 21 IS - 1 SP - 123 EP - 135 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Friebel, Francis A1 - Hermanussen, Michael A1 - Scheffler, Christiane T1 - Popular ideas and convictions about factors influencing the growth as well as the adult height of children BT - a German-French comparison JF - Journal of biological and clinical anthropology : Anthropologischer Anzeiger ; Mitteilungsorgan der Gesellschaft für Anthropologie N2 - Common knowledge suggests that growth in height is influenced by nutrition, genetics, health, and environmental and general living conditions. In addition, modern studies showed that also social mobility and dominance within the social group, may significantly affect adolescent growth and final height. The aim of the study was to investigate the impact of popular ideas and beliefs about factors influencing the growth on the biology of child and adolescent growth. We hypothesized that these beliefs are culture-specific and age-dependent. We investigated 307 French and 315 German participants of all age-groups. We collected polarising statements by questionnaire that the participants had to agree or disagree on. French participants see a connection between nutrition and the body height of children. This is different in Germany and may be due to the fact that French food culture is more traditional. Genetic factors were generally overestimated and considered as the most important determinants of longitudinal-growth. The participants denied an influence of disease and social status. Participants over 35 years of age considered adult height to be independent of environmental factors. In conclusion, popular beliefs partly depend on culture and appear to change with age as a result of growing experience. KW - nutrition KW - genetics KW - health KW - environmental and general living conditions KW - child growth KW - adolescent growth KW - final height Y1 - 2019 U6 - https://doi.org/10.1127/anthranz/2019/0972 SN - 0003-5548 VL - 76 IS - 5 SP - 365 EP - 370 PB - Schweizerbart CY - Stuttgart ER -