TY - JOUR A1 - Kummer, Volker T1 - Zusammenstellung lokaler Pilzliteratur 2004 - 2008 Y1 - 2010 SN - 0232-4598 ER - TY - JOUR A1 - Scheffler, Ingo A1 - Hiller, Andre T1 - Zur Ektoparasitenfauna der Fledermäuse in Niedersachsen : Neue Funde am Iberg bei Bad Grund N2 - Bei einer aktuellen Studie am Iberg in Bad Grund konnten im September 2010 acht Fledermausarten parasitologisch untersucht werden. Die Faenge ergaben Nachweise von 11 Ektoparasitenarten (Fledermausfliegen, Floehe, Flughaut- und Ohrmilben), wobei einige davon Erstfunde fuer Niedersachsen sind. Aus den Fundangaben wurden Parasitenspektren fuer die einzelnen Wirtsarten erstellt und durch weitere unveroeffentlichte Meldungen ergaenzt. Fuer den Vergleich von Ektoparasitenspektren verschiedener Wirtsarten erfolgte die Einfuehrung einer Formel, die die Berechnung einer allgemeinen "Parasitenlast" ermoeglicht. Die Betrachtung der Verteilung von Ektoparasiten auf Individuen zeigte eine starke Trennung verschiedener Parasitengruppen, ein synchrones Vorkommen wurde nur selten registriert. Moeglicherweise ist die Konkurrenz zwischen Ektoparasitenarten ein bisher unterschaetzter determinierender Faktor fuer die Praesenz auf einem Wirt. Y1 - 2010 ER - TY - THES A1 - Lengefeld, Jan T1 - Zirkulardichroismus-Messungen mit Synchrotronstrahlung am BESSY : Möglichkeiten und Grenzen bei der Untersuchung biologischer Proben T1 - Synchrotron radiation circular dichroism measurements at BESSY : potentials and limitations investigating biological samples N2 - In dieser Arbeit wurden die Möglichkeiten und Grenzen für Zirkulardichroismus-Messungen mit Synchrotronstrahlung untersucht. Dazu wurde ein Messaufbau für Zirkulardichroismus-Messungen an zwei Strahlrohren am Berliner Elektronenspeicherring für Synchrotronstrahlung eingesetzt, die für Messungen im Bereich des ultravioletten Lichts geeignet sind. Eigenschaften der Strahlrohre und des Messaufbau wurden in einigen wichtigen Punkten mit kommerziellen Zirkulardichroismus-Spektrometern verglichen. Der Schwerpunkt lag auf der Ausdehnung des zugänglichen Wellenlängenbereichs unterhalb von 180 nm zur Untersuchung des Zirkulardichroismus von Proteinen in diesem Bereich. In diesem Bereich ist es nicht nur die Lichtquelle sondern vor allem die Absorption des Lichts durch Wasser, die den Messbereich bei der Messung biologischer Proben in wässriger Lösung einschränkt. Es wurden Bedingungen gefunden, unter denen der Messbereich auf etwa 160 nm, in einigen Fällen bis auf 130 nm ausgedehnt werden konnte. Dazu musste die Pfadlänge deutlich reduziert werden und verschieden Probenküvetten wurden getestet. Der Einfluss der dabei auftretenden Spannungsdoppelbrechung in den Probenküvetten auf das Messsignal konnte mit einem alternativen Messaufbau deutlich reduziert werden. Systematische Fehler im Messsignal und auftretende Strahlenschäden begrenzen jedoch die Zuverlässigkeit der gemessenen Spektren. Bei Proteinfilmen schränkt die Absorption von Wasser den Messbereich kaum ein. Es wurden jedoch meist deutliche Unterschiede zwischen den Spektren von Proteinfilmen und den Spektren von Proteinen in wässriger Lösung festgestellt. Solange diese Unterschiede nicht minimiert werden können, stellen Proteinfilme keine praktikable Alternative zu Messungen in wässriger Lösung dar. N2 - The possibilities and limitations for synchrotron radiation circular dichroism measurements were investigated in this thesis. Therefore an experimental setup to measure circular dichroism was used at two beamlines at the “Berliner Elektronenspeicherring für Synchrotronstrahlung”(BESSY), which were suitable in the ultraviolet range of light. Properties of the beamlines and the experimental setup were compared to those of commercial circular dichroism spectrometer in some important points. The focus was on the extension of the accessible wavelength range below 180 nm, with the aim to investigate the circular dichroism of proteins in that range. It is not only the light source that limits measurements with aqueous solutions in that range, but mainly the absorption of the light by water. Conditions were found under which the wavelength range was extended to about 160 nm, in some cases even to 130 nm. To achieve this, a significant reduction of the pathlength was necessary. Several sample cells were tested for their usability. The effect of birefringence within the sample cells on the circular dichroism signal could be reduced strongly with an alternative experimental setup. However systematic errors in the circular dichroism signal and appearing radiation damage of the proteins limits the reliability of the measured spectra. By using protein films, the light absorption by water is not a problem anymore. However, significant differences between the circular dichroism spectra of protein films and proteins in aqueous solution occurred in most of the cases. Unless these differences can be eliminated, measuring protein films is not an alternative to measurements in aqueous solution. KW - Synchrotronstrahlung KW - Zirkulardichroismus KW - BESSY KW - Wasserabsorption KW - Protein KW - synchrotron radiation KW - circular dichroism KW - BESSY KW - water absorbance KW - protein Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-44263 ER - TY - JOUR A1 - Appelhagen, Ingo A1 - Huep, Gunnar A1 - Lu, Gui-Hua A1 - Strompen, Georg A1 - Weisshaar, Bernd A1 - Sagasser, Martin T1 - Weird fingers : functional analysis of WIP domain proteins N2 - WIP proteins form a plant specific subfamily of C2H2 zinc finger (ZF) proteins. In this study, we functionally characterized the WIP domain, which consists of four ZF motifs, and discuss molecular functions for WIP proteins. Mutations in each of the ZFs lead to loss of function of the TT1/WIP1 protein in Arabiopsis thaliana. SV40 type nuclear localisation signals were detected in two of the ZFs and functionally characterized using GFP fusions as well as new mutant alleles identified by TILLING. Promoter swap experiments showed that selected WIP proteins are partially able to take over TT1 function. Activity of the AtBAN promoter, a potential TT1 target, could be increased by the addition of TT1 to the TT2-TT8-TTG1 regulatory complex. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00145793 U6 - https://doi.org/10.1016/j.febslet.2010.06.007 SN - 0014-5793 ER - TY - THES A1 - Uhlig, Katja T1 - Untersuchungen PEG-basierter thermo-responsiver Polymeroberflächen zur Steuerung der Zelladhäsion T1 - Analysis of PEG-based thermo-responsive polymer surfaces to control cell adhesion N2 - Moderne Methoden für die Einzelzellanalyse werden dank der fortschreitenden Weiterentwicklung immer sensitiver. Dabei steigen jedoch auch die Anforderungen an das Probenmaterial. Viele Aufbereitungsprotokolle adhärenter Zellen beinhalten eine enzymatische Spaltung der Oberflächenproteine, um die Ablösung vom Zellkultursubstrat zu ermöglichen. Verschiedene Methoden, wie die Patch-Clamp-Technik oder eine auf der Markierung extrazellulärer Domänen von Membranproteinen basierende Durchflusszytometrie können dann nur noch eingeschränkt eingesetzt werden. Daher ist die Etablierung neuer Zellablösemethoden dringend notwendig. In der vorliegenden Arbeit werden erstmals PEG-basierte thermo-responsive Oberflächen erfolgreich für die Zellkultur eingesetzt. Dabei wird das zerstörungsfreie Ablösen verschiedener Zelllinien von den Oberflächen durch Temperatursenkung realisiert. Die Funktionalität der Oberflächen wird durch Variation der Polymerstruktur, sowie der Konzentration der Beschichtungslösung, durch Beschichtung der Oberflächen mit einem zelladhäsionsfördernden Protein (Fibronektin) und durch Adsorption zelladhäsionsvermittelnder Peptide (RGD) optimiert. Um den Zellablösungsprozess detaillierter zu untersuchen, wird hier zum ersten Mal der direkte Zellkontakt mit thermo-responsiven Oberflächen mittels oberflächensensitiver Mikroskopie (TIRAF) sichtbar gemacht. Mit dieser Technik sind die exakte Quantifizierung und die Analyse der Reduktion der Zelladhäsionsfläche während des Abkühlens möglich. Hierbei werden in Abhängigkeit von der Zelllinie Unterschiede im Zellverhalten während des Ablösens festgestellt: Zellen, wie eine Brustkrebszelllinie und eine Ovarzelllinie, die bekanntermaßen stärker mit ihrer Umgebung in Kontakt treten, vergrößern im Verlauf des Beobachtungszeitraumes den Abstand zwischen Zellmembran und Oberfläche, reduzieren jedoch ihre Zell-Substratkontaktfläche kaum. Mausfibroblasten hingegen verkleinern drastisch die Zelladhäsionsfläche. Der Ablösungsprozess wird vermutlich aktiv von den Zellen gesteuert. Diese Annahme wird durch zwei Beobachtungen gestützt: Erstens verläuft die Reduktion der Zelladhäsionsfläche bei Einschränkung des Zellmetabolismus durch eine Temperatursenkung auf 4 °C verzögert. Zweitens hinterlassen die Zellen Spuren, die nach dem Ablösen der Zellen auf den Oberflächen zurückbleiben. Mittels Kombination von TIRAF- und TIRF-Mikroskopie werden die Zelladhäsionsfläche und die Aktinstruktur gleichzeitig beobachtet. Die Verknüpfung beider Methoden stellt eine neue Möglichkeit dar, intrazelluläre Prozesse mit der Zellablösung von thermo-responsiven Oberflächen zu korrelieren. N2 - Modern methods for single-cell analysis are becoming increasingly sensitive. At the same time, requirements for the sample material are on the rise. Today, sample preparation of adherent cells usually includes steps of enzymatic treatment to digest surface proteins thus, inducing cell detachment from culture substrates. This strongly limits the application of different techniques like patch clamp or labelling of extracellular domains of membrane proteins for flow cytometry. Therefore, a new cell detachment method is urgently required. In the present work, new PEG-based thermo-responsive polymers are used for cell culture for the first time. Here, non-destructive detachment of different cell lines from polymer-coated surfaces is realised by controlled temperature reduction. The surface functionality is systematically optimised by varying the concentration of the coating solutions, by artificial surface coating of a cell adhesion-mediating protein (fibronectin) and by co-adsorption of a cell adhesion-mediating peptide (RGD). For detailed analysis of the cell detachment process, TIRF microscopy is used to directly visualise the cell contacts on the thermo-responsive surfaces. Using this technique allows both the quantification and analysis of the reduction of the cell adhesion area during sample cooling. Furthermore, for several cell lines, different behaviours in cell detachment are observed. Cells that have close contact to their substrate like MCF-7 breast cancer cell line and CHO-K1 ovary cells increase the distance between cell membrane and surface, but there is only little decrease of cell-substrate adhesion area. In contrast, L929 fibroblasts reduce the cell adhesion area drastically. Furthermore, the hypothesis that the cell detachment is an active process is shown by lowering the cell metabolism by temperature reduction to 4 °C and by the cell traces that are left behind after rinsing the surfaces. A combination of TIRAF and TIRF enables visualising the cell adhesion area and actin structures. Measuring both parameters simultaneously opens up new possibilities to correlate intracellular and cell detachment processes on thermo-responsive surfaces. KW - thermo-responsive Polymere KW - Polyethylenglykol KW - TIRF KW - Zelladhäsion KW - thermo-responsive polymers KW - polyethylene glycol KW - TIRF KW - cell adhesion Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-47784 ER - TY - JOUR A1 - Wronski, Torsten A1 - Wacher, Timothy A1 - Hammond, Robert L. A1 - Winney, Bruce A1 - Hundertmark, Kris J. A1 - Blacket, Mark J. A1 - Mohammed, Osama B. A1 - Flores, Benito A1 - Omer, Sawsan A. A1 - Macasero, William A1 - Plath, Martin A1 - Tiedemann, Ralph A1 - Bleidorn, Christoph T1 - Two reciprocally monophyletic mtDNA lineages elucidate the taxonomic status of Mountain gazelles (Gazella gazella) N2 - Mountain gazelles (Gazella gazella) rank among the most critically endangered mammals on the Arabian Peninsula. Past conservation efforts have been plagued by confusion about the phylogenetic relationship among various 'phenotypically discernable' populations, and even the question of species boundaries was far from being certain. This lack of knowledge has had a direct impact on conservation measures, especially ex situ breeding programmes, hampering the assignment of captive stocks to potential conservation units. Here, we provide a phylogenetic framework, based on the analysis of mtDNA sequences (360 bp cytochrome b and 213 bp Control Region) of 126 individuals collected from the wild throughout the Arabian Peninsula and from captive stocks. Our analyses revealed two reciprocally monophyletic genetic lineages within the presumed species Gazella gazella: one 'northern clade' on the Golan Heights (Israel/Syrian border) and one genetically diverse larger clade from the rest of the Arabian Peninsula including the Arava Valley (Negev, Israel). Applying the Strict Phylogenetic Species Concept (sensu Mishler & Theriot, 2000) allows assigning species status to these two major clades. Y1 - 2010 UR - http://www.informaworld.com/smpp/title~content=t913521959~db=all U6 - https://doi.org/10.1080/14772001003613192 SN - 1477-2000 ER - TY - JOUR A1 - Valleriani, Angelo A1 - Ignatova, Zoya A1 - Nagar, Apoorva A1 - Lipowsky, Reinhard T1 - Turnover of messenger RNA : polysome statistics beyond the steady state N2 - The interplay between turnover or degradation and ribosome loading of messenger RNA (mRNA) is studied theoretically using a stochastic model that is motivated by recent experimental results. Random mRNA degradation affects the statistics of polysomes, i.e., the statistics of the number of ribosomes per mRNA as extracted from cells. Since ribosome loading of newly created mRNA chains requires some time to reach steady state, a fraction of the extracted mRNA/ ribosome complexes does not represent steady state conditions. As a consequence, the mean ribosome density obtained from the extracted complexes is found to be inversely proportional to the mRNA length. On the other hand, the ribosome density profile shows an exponential decrease along the mRNA for prokaryotes and becomes uniform in eukaryotic cells. Copyright (C) EPLA, 2010 Y1 - 2010 UR - http://iopscience.iop.org/0295-5075/ U6 - https://doi.org/10.1209/0295-5075/89/58003 SN - 0295-5075 ER - TY - THES A1 - Pieritz, Janin T1 - Transport von Proteinen und mikro RNAs im Pholoem von Brassica napus und Arabidopsis thaliana Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Hameed, Muhammad Waqar T1 - Transcriptional and translational control of mitochondrial gene expression in plants Y1 - 2010 CY - Potsdam ER - TY - BOOK A1 - Dittmann-Thünemann, Elke T1 - Toxische Cyanobakterien auf dem Vormarsch : Überlebenskünstler und Meister der Naturstoffsynthese : Antrittsvorlesung 2010-06-16 Y1 - 2010 UR - http://info.ub.uni-potsdam.de/multimedia/show_projekt.php?projekt_id=59 PB - Univ.-Bibl. CY - Potsdam ER - TY - THES A1 - Santos, Francisca dos T1 - Towards a mechanistic understanding of species and community responses to climate change : the role of disturbances interaction Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Lehmann, Andreas A1 - Scheffler, Christiane A1 - Hermanussen, Michael T1 - The variation in age at menarche : an indicator of historic developmental tempo N2 - Ample literature describes the history of the association between the advances in the health and wealth of people, and mortality rates, life expectancy and adult height. Twentynine German studies with n > 200 subjects published since 1848 on menarcheal age, were reanalyzed, and 101 studies from various other European and non-European countries. On average, mean age at menarche declined since the mid-19(th) century. Historic urban samples tended to decline earlier than rural groups, upper class women earlier than working class women. In Germany, minimum values for the age at menarche were seen already between the two World Wars (Leipzig 12.6 years in 1934, Halle 13.3 years in 1939). Values for mean age and SD for age at menarche were strongly associated. With improving historic circumstances, the two parameters declined in parallel. The standard deviation for menarcheal age dropped from over 2.5 years in mid-19th century France to little more or even less than 1 year in most modern countries. In the German studies the correlation between menarcheal age and SD was almost complete with r = 0.96 (y = 0.35x - 3.53). Similar associations between mean age at menarche and SD for age were found in other European countries. The obvious and immediate effects of historic events on menarcheal age, and particularly on the age distribution, indicate that menarche is a sensitive indicator of public health and wealth, and may be an appropriate estimator for the socio-economic background of historic populations. Y1 - 2010 UR - http://www.ingentaconnect.com/content/schweiz/aa U6 - https://doi.org/10.1127/0003-5548/2010/0086 SN - 0003-5548 ER - TY - JOUR A1 - Tschöpe, Okka A1 - Tielbörger, Katja T1 - The role of successional stage and small-scale disturbance for establishment of pioneer grass Corynephorus canescens N2 - Question Which mechanisms promote the maintenance of the protected pioneer grass Corynephorus canescens in a mosaic landscape? Which are the interactive effects of small-scale disturbances, successional stage and year-to-year variation on early establishment probabilities of C. canescens? Location Brandenburg, NE Germany. Methods We measured emergence and survival rates over 3 yr in a sowing-experiment conducted in three successional stages (C. canescens- dominated site, ruderal forb site and pioneer forest) under two different regimes of mechanical ground disturbance (disturbed versus undisturbed control). Results Overall, disturbance led to higher emergence in a humid year and to lower emergence in a very dry year. Apparently, when soil moisture was sufficient, the main factor limiting C. canescens' establishment was competition, while in the dry year, water became the limiting factor. Survival rates were not affected by disturbance. In humid years, C. canescens emerged in higher numbers in open successional stages while in the dry year, emergence rates were higher in late stages, suggesting an important role of late successional stages for the persistence of C. canescens. Conclusions Our results suggest that small-scale disturbances can promote germination of C. canescens. However, disturbances should be carefully planned. The optimal strategy for promoting C. canescens is to apply disturbances just before seed dispersal and not during dry years. At the landscape scale, a mosaic of different vegetation types is beneficial for the protected pioneer grass as facilitation by late-successional species may be an important mechanism for the persistence of C. canescens, especially in dry years. Y1 - 2010 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1654-109X.2009.01072.x/full U6 - https://doi.org/10.1111/j.1654-109X.2009.01072.x SN - 1402-2001 ER - TY - JOUR A1 - Verlinden, Heleen A1 - Vleugels, Rut A1 - Marchal, Elisabeth A1 - Badisco, Liesbeth A1 - Pflüger, Hans-Joachim A1 - Blenau, Wolfgang A1 - Vanden Broeck, Jozef T1 - The role of octopamine in locusts and other arthropods N2 - The biogenic amine octopamine and its biological precursor tyramine are thought to be the invertebrate functional homologues of the vertebrate adrenergic transmitters. Octopamine functions as a neuromodulator, neurotransmitter and neurohormone in insect nervous systems and prompts the whole organism to "dynamic action". A growing number of studies suggest a prominent role for octopamine in modulating multiple physiological and behavioural processes in invertebrates, as for example the phase transition in Schistocerca gregaria. Both octopamine and tyramine exert their effects by binding to specific receptor proteins that belong to the superfamily of G protein-coupled receptors. Since these receptors do not appear to be present in vertebrates, they may present very suitable and specific insecticide and acaricide targets. (C) 2010 Elsevier Ltd. All rights reserved. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00221910 U6 - https://doi.org/10.1016/j.jinsphys.2010.05.018 SN - 0022-1910 ER - TY - JOUR A1 - Hemp, Claudia A1 - Heller, Klaus-Gerhard A1 - Kehl, Siegfried A1 - Warchalowska-Sliwa, Elzbieta A1 - Waegele, Johann Wolfgang A1 - Hemp, Andreas T1 - The Phlesirtes complex (Orthoptera, Tettigoniidae, Conocephalinae, Conocephalini) reviewed : integrating morphological, molecular, chromosomal and bioacoustic data N2 - The tettigoniid genus Phlesirtes Bolivar and its allies are reviewed. Morphological, ecological and molecular data prompt the erection of the new genus Chortoscirtes gen.n. with type species Xiphidion meruense Sjostedt. The genera Phlesirtes, Chortoscirtes, Karniella and Naskreckiella are characterized by morphological characters supported by molecular, acoustic, ecological and chromosomal data. Four species, Chortoscirtes pseudomeruensis sp.n., C. masaicus sp.n., C. puguensis sp.n. and C. serengeti sp.n., are described from localities in northern and coastal Tanzania and one Karniella, K. crassicerca sp.n., is described from Uganda. The following comb n. are proposed: Phlesirtes kibonotensis (Sjostedt) and Phlesirtes kilimandjaricus (Sjostedt). Subtribal status is proposed for the four investigated African genera. A key to the Chortoscirtes species is provided. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0307-6970 U6 - https://doi.org/10.1111/j.1365-3113.2009.00512.x SN - 0307-6970 ER - TY - JOUR A1 - Hejazi, Mahdi A1 - Fettke, Jörg A1 - Koetting, Oliver A1 - Zeeman, Samuel C. A1 - Steup, Martin T1 - The Laforin-like dual-specificity phosphatase SEX4 from Arabidopsis hydrolyzes both C6-and C3-phosphate esters introduced by starch-related dikinases and thereby affects phase transition of alpha-glucans N2 - The biochemical function of the Laforin-like dual-specific phosphatase AtSEX4 (EC 3.1.3.48) has been studied. Crystalline maltodextrins representing the A- or the B-type allomorph were prephosphorylated using recombinant glucan, water dikinase (StGWD) or the successive action of both plastidial dikinases (StGWD and AtPWD). AtSEX4 hydrolyzed carbon 6-phosphate esters from both the prephosphorylated A- and B-type allomorphs and the kinetic constants are similar. The phosphatase also acted on prelabeled carbon-3 esters from both crystalline maltodextrins. Similarly, native starch granules prelabeled in either the carbon-6 or carbon-3 position were also dephosphorylated by AtSEX4. The phosphatase did also hydrolyze phosphate esters of both prephosphorylated maltodextrins when the (phospho)glucans had been solubilized by heat treatment. Submillimolar concentrations of nonphosphorylated maltodextrins inhibited AtSEX4 provided they possessed a minimum of length and had been solubilized. As opposed to the soluble phosphomaltodextrins, the AtSEX4- mediated dephosphorylation of the insoluble substrates was incomplete and at least 50% of the phosphate esters were retained in the pelletable (phospho) glucans. The partial dephosphorylation of the insoluble glucans also strongly reduced the release of nonphosphorylated chains into solution. Presumably, this effect reflects fast structural changes that following dephosphorylation occur near the surface of the maltodextrin particles. A model is proposed defining distinct stages within the phosphorylation/dephosphorylation-dependent transition of alpha-glucans from the insoluble to the soluble state. Y1 - 2010 UR - http://www.plantphysiol.org/ U6 - https://doi.org/10.1104/pp.109.149914 SN - 0032-0889 ER - TY - JOUR A1 - Doorduin, Leonie J. A1 - van den Hof, Kevin A1 - Vrieling, Klaas A1 - Joshi, Jasmin Radha T1 - The lack of genetic bottleneck in invasive Tansy ragwort populations suggests multiple source populations N2 - Jacobaea vulgaris (Asteraceae) is a species of Eurasian origin that has become a serious non-indigenous weed in Australia, New Zealand, and North America. We used neutral molecular markers to (1) test for genetic bottlenecks in invasive populations and (2) to investigate the invasion pathways. It is for the first time that molecular markers were used to unravel the process of introduction in this species. The genetic variation of 15 native populations from Europe and 16 invasive populations from Australia, New Zealand and North America were compared using the amplified fragment length polymorphisms (AFLP's). An analysis of molecular variance showed that a significant part (10%) of the total genetic variations between all individuals could be explained by native or invasive origin. Significant among-population differentiation was detected only in the native range, whereas populations from the invasive areas did not significantly differ from each other; nor did the Australian, New Zealand and North American regions differ within the invasive range. The result that native populations differed significantly from each other and that the amount of genetic variation, measured as the number of polymorphic bands, did not differ between the native and invasive area, strongly suggests that introductions from multiple source populations have occurred. The lack of differentiation between invasive regions suggests that either introductions may have occurred from the same native sources in all invasive regions or subsequent introductions took place from one into another invasive region and the same mix of genotypes was subsequently introduced into all invasive regions. An assignment test showed that European populations from Ireland, the Netherlands and the United Kingdom most resembled the invasive populations. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/14391791 U6 - https://doi.org/10.1016/j.baae.2009.12.007 SN - 1439-1791 ER - TY - JOUR A1 - Jing, Runchun A1 - Vershinin, Alexander A1 - Grzebyta, Jacek A1 - Shaw, Paul A1 - Smïykal, Petr A1 - Marshall, David A1 - Ambrose, Michael J. A1 - Ellis, Noel A1 - Flavell, Andrew J. T1 - The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis Y1 - 2010 UR - http://www.biomedcentral.com/1471-2148/10/44 U6 - https://doi.org/10.1186/1471-2148-10-44 SN - 1471-2148 ER - TY - JOUR A1 - Verlinden, Heleen A1 - Vleugels, Rut A1 - Marchal, Elisabeth A1 - Badisco, Liesbeth A1 - Tobback, Julie A1 - Pflüger, Hans-Joachim A1 - Blenau, Wolfgang A1 - Vanden Broeck, Jozef T1 - The cloning, phylogenetic relationship and distribution pattern of two new putative GPCR-type octopamine receptors in the desert locust (Schistocerca gregaria) N2 - The biogenic amine octopamine functions as a neuromodulator, neurotransmitter and neurohormone in insect nervous systems. It plays a prominent role in modulating multiple physiological and behavioural processes in invertebrates. Octopamine exerts its effects by binding to specific receptor proteins that belong to the superfamily of G protein-coupled receptors. We found two partial sequences of putative octopamine receptors in the desert locust Schistocerca gregaria (SgOct alpha R and SgOct beta R) and investigated their transcript levels in males and females of both phases and during the transition between long-term solitarious and gregarious locusts. The transcript levels of SgOctaR are the highest in the central nervous system, whereas those of SgOct beta R are the highest in the flight muscles, followed by the central nervous system. Both SgOct alpha R and SgOct beta R show higher transcript levels in long-term gregarious locusts as compared to solitarious ones. The rise of SgOct beta R transcript levels already appears during the first 4 h of gregarisation, during which also the behavioural changes take place. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00221910 U6 - https://doi.org/10.1016/j.jinsphys.2010.03.003 SN - 0022-1910 ER - TY - JOUR A1 - Andres, Dorothee A1 - Hanke, Christin A1 - Baxa, Ulrich A1 - Seul, Anait A1 - Barbirz, Stefanie A1 - Seckler, Robert T1 - Tailspike interactions with lipopolysaccharide effect DNA ejection from phage P22 particles in vitro N2 - Initial attachment of bacteriophage P22 to the Salmonella host cell is known to be mediated by interactions between lipopolysaccharide (LPS) and the phage tailspike proteins (TSP), but the events that subsequently lead to DNA injection into the bacterium are unknown. We used the binding of a fluorescent dye and DNA accessibility to DNase and restriction enzymes to analyze DNA ejection from phage particles in vitro. Ejection was specifically triggered by aggregates of purified Salmonella LPS but not by LPS with different O-antigen structure, by lipid A, phospholipids, or soluble O-antigen polysaccharide. This suggests that P22 does not use a secondary receptor at the bacterial outer membrane surface. Using phage particles reconstituted with purified mutant TSP in vitro, we found that the endorhamnosidase activity of TSP degrading the O-antigen polysaccharide was required prior to DNA ejection in vitro and DNA replication in vivo. If, however, LPS was pre-digested with soluble TSP, it was no longer able to trigger DNA ejection, even though it still contained five O-antigen oligosaccharide repeats. Together with known data on the structure of LPS and phage P22, our results suggest a molecular model. In this model, tail-spikes position the phage particles on the outer membrane surface for DNA ejection. They force gp26, the central needle and plug protein of the phage tail machine, through the core oligosaccharide layer and into the hydrophobic portion of the outer membrane, leading to refolding of the gp26 lazo-domain, release of the plug, and ejection of DNA and pilot proteins. Y1 - 2010 UR - http://www.jbc.org/ U6 - https://doi.org/10.1074/jbc.M110.169003 SN - 0021-9258 ER - TY - THES A1 - Tronci, Giuseppe T1 - Synthesis, characterization, and biological evaluation of gelatin-based scaffolds T1 - Synthese, Charakterisierung und biologische Evaluierung Gelatine-basierter Scaffolds N2 - This work presents the development of entropy-elastic gelatin based networks in the form of films or scaffolds. The materials have good prospects for biomedical applications, especially in the context of bone regeneration. Entropy-elastic gelatin based hydrogel films with varying crosslinking densities were prepared with tailored mechanical properties. Gelatin was covalently crosslinked above its sol gel transition, which suppressed the gelatin chain helicity. Hexamethylene diisocyanate (HDI) or ethyl ester lysine diisocyanate (LDI) were applied as chemical crosslinkers, and the reaction was conducted either in dimethyl sulfoxide (DMSO) or water. Amorphous films were prepared as measured by Wide Angle X-ray Scattering (WAXS), with tailorable degrees of swelling (Q: 300-800 vol. %) and wet state Young’s modulus (E: 70 740 kPa). Model reactions showed that the crosslinking reaction resulted in a combination of direct crosslinks (3-13 mol.-%), grafting (5-40 mol.-%), and blending of oligoureas (16-67 mol.-%). The knowledge gained with this bulk material was transferred to the integrated process of foaming and crosslinking to obtain porous 3-D gelatin-based scaffolds. For this purpose, a gelatin solution was foamed in the presence of a surfactant, Saponin, and the resulting foam was fixed by chemical crosslinking with a diisocyanate. The amorphous crosslinked scaffolds were synthesized with varied gelatin and HDI concentrations, and analyzed in the dry state by micro computed tomography (µCT, porosity: 65±11–73±14 vol.-%), and scanning electron microscopy (SEM, pore size: 117±28–166±32 µm). Subsequently, the work focused on the characterization of the gelatin scaffolds in conditions relevant to biomedical applications. Scaffolds showed high water uptake (H: 630-1680 wt.-%) with minimal changes in outer dimension. Since a decreased scaffold pore size (115±47–130±49 µm) was revealed using confocal laser scanning microscopy (CLSM) upon wetting, the form stability could be explained. Shape recoverability was observed after removal of stress when compressing wet scaffolds, while dry scaffolds maintained the compressed shape. This was explained by a reduction of the glass transition temperature upon equilibration with water (dynamic mechanical analysis at varied temperature (DMTA)). The composition dependent compression moduli (Ec: 10 50 kPa) were comparable to the bulk micromechanical Young’s moduli, which were measured by atomic force microscopy (AFM). The hydrolytic degradation profile could be adjusted, and a controlled decrease of mechanical properties was observed. Partially-degraded scaffolds displayed an increase of pore size. This was likely due to the pore wall disintegration during degradation, which caused the pores to merge. The scaffold cytotoxicity and immunologic responses were analyzed. The porous scaffolds enabled proliferation of human dermal fibroblasts within the implants (up to 90 µm depth). Furthermore, indirect eluate tests were carried out with L929 cells to quantify the material cytotoxic response. Here, the effect of the sterilization method (Ethylene oxide sterilization), crosslinker, and surfactant were analyzed. Fully cytocompatible scaffolds were obtained by using LDI as crosslinker and PEO40 PPO20-PEO40 as surfactant. These investigations were accompanied by a study of the endotoxin material contamination. The formation of medical-grade materials was successfully obtained (<0.5 EU/mL) by using low-endotoxin gelatin and performing all synthetic steps in a laminar flow hood. N2 - Diese Arbeit beschreibt die Entwicklung Entropie-elastischer Gelatine-basierter Netzwerke als Filme und Scaffolds. Mögliche Anwendungen für die entwickelten Materialien liegen im biomedizinischen Bereich, insbesondere der Knochenregeneration. Im ersten Schritt der Arbeit wurden Entropie-elastische, Gelatine-basierte Hydrogel-Filme entwickelt, deren mechanische Eigenschaften durch die Veränderung der Quervernetzungsdichte eingestellt werden konnten. Dazu wurde Gelatine in Lösung oberhalb der Gel-Sol-Übergangstemperatur kovalent quervernetzt, wodurch die Ausbildung helikaler Konformationen unterdrückt wurde. Als Quervernetzer wurden Hexamethylendiisocyanat (HDI) oder Lysindiisocyanat ethylester (LDI) verwendet, und die Reaktionen wurden in Dimethylsulfoxid (DMSO) oder Wasser durchgeführt. Weitwinkel Röntgenstreuungs Spektroskopie (WAXS) zeigte, dass die Netzwerke amorph waren. Der Quellungsgrad (Q: 300-800 vol. %) und der Elastizitätsmodul (E: 70 740 kPa) konnten dabei durch die systematische Veränderung der Quervernetzungsdichte eingestellt werden. Die Analyse der Quervernetzungsreaktion durch Modellreaktionen zeigte, dass die Stabilisierung der Hydrogele sowohl auf kovalente Quervernetzungen (3-13 mol.-%) als auch auf Grafting von (5-40 mol.-%) und Verblendung mit Oligoharnstoffen (16-67 mol.-%) zurückgeführt werden kann. Die Erkenntnisse aus dem Umgang mit dem Bulk-Material wurden dann auf einen integrierten Prozess der Verschäumung und chemischen Quervernetzung transferiert, so dass poröse, dreidimensionale Scaffolds erhalten wurden. Dafür wurde eine wässrige Gelatinelösung in Gegenwart eines Tensids, Saponin, verschäumt, und durch chemische Quervernetzung mit einem Diisocyanat zu einem Scaffold fixiert. Die Scaffolds hergestellt mit unterschiedlichen Mengen HDI und Gelatine, wurden im trockenen Zustand mittels Mikro Computertomographie (µCT, Porosität: 65±11–73±14 vol.-%) und Rasterelektronenmikroskopie (SEM, Porengröße: 117±28–166±32) charakterisiert. Anschließend wurden die Scaffolds unter Bedingungen charakterisiert, die für biomedizinische Anwendungen relevant sind. Die Scaffolds nahmen große Mengen Wasser auf (H: 630 1680 wt.-%) bei nur minimalen Änderungen der äußeren Dimensionen. Konfokale Laser Scanning Mikroskopie zeigte, dass die Wasseraufnahme zu einer verminderten Porengröße führte (115±47–130±49 µm), wodurch die Formstabilität erklärbar ist. Eine Formrückstellung der Scaffolds wurde beobachtet, wenn Scaffolds im nassen Zustand komprimiert wurden und dann entlastet wurden, während trockene Proben in der komprimierten Formen blieben (kalte Deformation). Dieses Entropie-elastische Verhalten der nassen Scaffolds konnte durch die Verminderung der Glasübergangstemperatur des Netzwerks nach Wasseraufnahme erklärt werden (DMTA). Die zusammensetzungsabhängigen Kompressionsmoduli (Ec: 10 50 kPa) waren mit den mikromechanischen Young’s moduli vergleichbar, die mittels Rasterkraftmikroskopie (AFM) gemessen wurden. Das hydrolytische Degradationsprofil konnte variiert werden, und während des Abbaus kam es nur zu kontrolliert-graduellen Änderungen der mechanischen Eigenschaften. Während der Degradation konnte ein Anstieg der mittleren Porengröße beobachtet werden, was durch das Verschmelzen von Poren durch den Abbau der Wände erklärt werden kann. Die Endotoxinbelastung und die Zytotoxizität der Scaffolds wurden untersucht. Humane Haut-Fibroblasten wuchsen auf und innerhalb der Scaffolds (bis zu einer Tiefe von 90 µm). Indirekte Eluat-Tests mit L929 Mausfibroblasten wurden genutzt, um die Zytotoxizität der Materialien, insbesondere den Einfluss des Quervernetzertyps und des Tensids, zu bestimmen. Vollständig biokompatible Materialien wurden erzielt, wenn LDI als Quervernetzer und PEO40 PPO20-PEO40 als Tensid verwendet wurden. Durch den Einsatz von Gelatine mit geringem Endotoxin-Gehalt, und die Synthese in einer Sterilarbeitsblank konnten Materialien für medizinische Anwendungen (Endotoxin-Gehalt < 0.5 EU/mL) hergestellt werden. KW - Hydrogele KW - Polymer-Netzwerke KW - Gelatine KW - poröse Gerüste KW - Abbau KW - regenerative Medizin KW - hydrogels KW - polymer networks KW - gelatin KW - porous scaffolds KW - degradation KW - regenerative medicine Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-49727 ER - TY - JOUR A1 - Staab, Paul R. A1 - Walossek, Jörg A1 - Nellessen, David A1 - Grünberg, Raik A1 - Arndt, Katja Maren A1 - Müller, Kristian M. T1 - SynBioWave : a real-time communication platform for molecular and synthetic biology N2 - Synthetic Biology is advanced by many users and relies on the assembly of genetic elements to devices, systems and finally genomes. SynBioWave is a software suite that enables multiple distributed users to analyze and construct genetic parts in real-time collaboration. It builds on Google Wave and provides an extensible robot-robot-user communication framework, a menu driven user interface, biological data handling including DAS and an internal database communication. We demonstrate its use by implementing robots for gene-data retrieval, manipulation and display. The initial development of SynBioWave demonstrates the power of the underlying Google Wave protocol for Synthetic Biology and lays the foundation for continuous and user-friendly extensions. Specialized wave-robots with a manageable set of capabilities will divide and conquer the complex task of creating a genome in silico. Y1 - 2010 UR - http://bioinformatics.oxfordjournals.org/ U6 - https://doi.org/10.1093/bioinformatics/btq518 SN - 1367-4803 ER - TY - JOUR A1 - Grießner, Matthias A1 - Hartig, Dave A1 - Christmann, Alexander A1 - Ehrentreich-Förster, Eva A1 - Warsinke, Axel A1 - Bier, Frank Fabian T1 - Surface regeneration of microfluidic microarray printheads through plasma techniques N2 - This work describes a method for surface regeneration of microfluidic microarray printheads through plasma techniques. Modification procedures were chosen in a way to obtain high reproducibility with a minimum of time consumption. The idea behind this is a complete regeneration of a microarray printhead before or after usage to achieve best printing results over a typical print job. A sequence of low-pressure oxygen-plasma and plasma polymerization with hexamethyldisiloxane (HMDSO) was used to regenerate printheads. Proof of the concept is given through quality control performed with a spotter implemented CCD camera, contact angle measurements and a typical hybridization experiment. Stable printing results were obtained over 3000 activations showing that the presented method is suitable for treatment of microarray printheads. Y1 - 2010 UR - http://iopscience.iop.org/0960-1317/ U6 - https://doi.org/10.1088/0960-1317/20/3/037002 SN - 0960-1317 ER - TY - JOUR A1 - Spricigo, Roberto A1 - Richter, Claudia A1 - Leimkühler, Silke A1 - Gorton, Lo A1 - Scheller, Frieder W. A1 - Wollenberger, Ursula T1 - Sulfite biosensor based on osmium redox polymer wired sulfite oxidase N2 - A biosensor, based on a redoxactive osmium polymer and sulfite oxidase on screen-printed electrodes, is presented here as a promising method for the detection of sulfite. A catalytic oxidative current was generated when a sample containing sulfite was pumped over the carbon screen-printed electrode modified with osmium redox polymer wired sulfite oxidase. A stationary value was reached after approximately 50 s and a complete measurement lasted no more than 3 min. The electrode polarized at -0.1 V (vs. Ag vertical bar AgCl 1M KCl) permits minimizing the influence of interfering substances, since these compounds can be unspecific oxidized at higher potentials. Because of the good stability of the protein film on the electrode surface, a well functioning biosensor-flow system was possible to construct. The working stability and reproducibility were further enhanced by the addition of bovine serum albumin generating a more long-term stable and biocompatible protein environment. The optimized biosensor showed a stable signal for more than a week of operation and a coefficient of variation of 4.8% for 12 successive measurements. The lower limit of detection of the sensor was 0.5 mu M sulfite and the response was linear until 100 mu M. The high sensitivity permitted a 1:500 dilution of wine samples. The immobilization procedure and the operational conditions granted minimized interferences. Additionally, repeating the immobilization procedure to form several layers of wired SO further increased the sensitivity of such a sensor. Finally. the applicability of the developed sulfite biosensor was tested on real samples, such as white and red wines. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/09277757 U6 - https://doi.org/10.1016/j.colsurfa.2009.09.001 SN - 0927-7757 ER - TY - THES A1 - Bromke, Mariusz Aleksander T1 - Studies on the metabolic, transcriptomic and genomic aspects of the sulfur metabolism in marine diatom Thalassiosira pseudonana Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Neuendorf, Antje T1 - Studien zur Reinigung, Monomerisierung und Aggragation von Huntingtin : Exon 1 Proteinkonstrukten Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Timmer, Marco A1 - Theiss, Hans A1 - Jürchott, Katrin A1 - Ries, Christian A1 - Paron, Igor A1 - Franz, W. A1 - Selbig, Joachim A1 - Guo, Ketai A1 - Tonn, Jörg A1 - Schichor, Christian T1 - Stromal-Derived Factor 1a (Sdf-1a), a Homing Factor for Mesenchymal Progenitor Cells, Is Elevated in Tumor Tissue and Plasma of Glioma Patients N2 - Malignant gliomas are a fatal disease lacking sufficient possibilities for early diagnosis and chemical markers to detect remission or relapse. The recruitment of progenitor cells such as mesenchymal stem cells (MSC) is a main feature of gliomas. Stromal cell-derived factor-1 (SDF-1), a chemokine produced in glioma cell lines, enhances migration in MSC and has been associated with cell survival and apoptosis in gliomas. Therefore, this study was performed to evaluate (i) whether SDF-1 and its receptors are expressed in human malignant gliomas in situ and (ii) if SDF-1 might potentially play a role in recruiting MSCs into human glioma. In glioblastoma tissue, immunohistochemistry revealed that SDF-1 and its receptor CXCR4 are expressed in regions of angiogenesis and necrosis, and qPCR showed that SDF-1 is elevated. Public expression data indicated that CXCR4 was upregulated. The latter data also illustrate that SDF-1 could be up- or downregulated in glioma compared to normal brain in a transcript-specific manner. In plasma, SDF-1 is elevated in glioma patients. The level is reduced by both dexamethasone intake and surgery. Dexamethasone also decreased SDF-1 production in cells in vitro. The undirected migration of human MSC (hMSC) was not enhanced by the addition of SDF-1. However, SDF-1 stimulated directed invasion of hMSC in a dose-dependent manner. Taken together, we show that SDF-1 is a potent chemoattractant of progenitor cells such as hMSCs and that its expression is elevated in glioma tissue, which results in elevated SDF-1 levels in the patient's plasma samples with concomittant decrease after tumor resection. The fact that elevated SDF-1 plasma levels are significantly decreased after tumor surgery could be a first hint that SDF-1 might act as tumor marker for malignant gliomas in order to detect disease progression or remission, respectively. Y1 - 2010 UR - http://neuro-oncology.oxfordjournals.org/ SN - 1522-8517 ER - TY - JOUR A1 - Abraham, Andreas A1 - Gruss, Michael T1 - Stress inoculation facilitates active avoidance learning of the semi-precocial rodent Octodon degus N2 - A growing body of evidence highlights the impact of the early social environment for the adequate development of brain and behavior in animals and humans. Disturbances of this environment were found to be both maladaptive and adaptive to emotional and cognitive function. Using the semi-precocial, biparental rodent Octodon degus, we aimed to examine (i) the impact of age (juvenile/adult), sex (male/female), and (ii) "motivation" to solve the task (by applying increasing foot-shock-intensities) on two-way active avoidance (TWA) learning in socially reared degus, and (iii) whether early life stress inoculation by 1 h daily parental separation during the first three weeks of life has maladaptive or adaptive consequences on cognitive function as measured by TWA learning. Our results showed that (i) juvenile degus, unlike altricial rats of the same age, can successfully learn the TWA task comparable to adults, and (ii) that learning performance improves with increasing "task motivation", irrespective of age and sex. Furthermore, we revealed that (iii) stress inoculation improves avoidance learning, particularly in juvenile males, quantitatively and qualitatively depending on "task motivation". In conclusion, the present study describes for the first time associative learning in O. degus and its modulation by early life stress experience as an animal model to study the underlying mechanisms of learning and memory in the stressed and unstressed brain. Although, stress is commonly viewed as being maladaptive, our data indicate that early life stress inoculation triggers developmental cascades of adaptive functioning, which may improve cognitive and emotional processing of stressors later in life. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/01664328 U6 - https://doi.org/10.1016/j.bbr.2010.05.018 SN - 0166-4328 ER - TY - JOUR A1 - Steinberg, Christian E. W. A1 - Ouerghemmi, Nadia A1 - Herrmann, Steffen A1 - Bouchnak, Rihab A1 - Timofeyev, Maxim A. A1 - Menzel, Ralph T1 - Stress by poor food quality and exposure to humic substances : daphnia magna responds with oxidative stress, lifespan extension, but reduced offspring numbers N2 - In freshwater systems, many abiotic and biotic factors determine the natural fluctuation of Daphnia spec. populations: climatic and water quality parameters, quantitative and qualitative food quality and quantity, predation, and humic substances. Many factors/stressors act in concert. In this contribution, we supplied Daphnia magna with two different diets (chlorococcal alga Pseudokirchneriella subcapitata and baker's yeast) fed ad libitum and exposed it to an environmentally realistic concentration of humic substances (HSs). Exposure to HSs caused a transcriptionally controlled stress response with studied genes; cat and hsp60, for the latter partial sequences have been identified. Furthermore, the exposure to HSs reduced the antioxidant capacity. Yet, a much stronger oxidative stress is caused by feeding yeast, which reduced the anti-oxidative capacity to values of approximately 50% of the green algal diet. This reduction is most likely due to the yeast's cell wall to resist digestion rather than to the elemental ratio or deficiency in long-chained unsaturated fatty acids, because both diets were deficient in fatty acids with back bones of more than 20 C-atoms. We assume that the biochemical machinery in the gut continuously activated oxygen to cleave the yeast's cell wall and, hence, reduced the antioxidative capacity of the animals. Neither the analyzed oxidant, H2O2, nor the antioxidants, total apparent ascorbic acid nor free proline, reflected the oxidative stress situations properly. In addition to the stress, HS exposure extended the mean lifespan of algae-fed D. magna, but at the expense of offspring numbers; so did also the pure yeast diet as compared to the algae diet. The first lifespan extension can be explained by the potential of HSs to block the pathway via the insulin-like growth factor 1 (IGF), whereas the second matches the, in aging papers, well described, but mechanistically poorly understood caloric restriction. Yeast-fed animals, exposed to HSs changed the energy allocation by reducing life span, but increasing offspring numbers. With the lifespan and offspring numbers, ecologically relevant parameters are differently affected by the simultaneous action of two environmentally relevant stressors. Y1 - 2010 UR - http://www.springerlink.com/content/100271 U6 - https://doi.org/10.1007/s10750-010-0334-4 SN - 0018-8158 ER - TY - JOUR A1 - Wong-Ekkabut, Jirasak A1 - Miettinen, Markus S. A1 - Dias, Christiano A1 - Karttunen, Mikko T1 - Static charges cannot drive a continuous flow of water molecules through a carbon nanotube Y1 - 2010 UR - http://www.nature.com/nnano U6 - https://doi.org/10.1038/nnano.2010.152 SN - 1748-3387 ER - TY - JOUR A1 - Lohmann, Daniel A1 - Stacey, Nicola A1 - Breuninger, Holger A1 - Jikumaru, Yusuke A1 - Müller, Dörte A1 - Sicard, Adrien A1 - Leyser, Ottoline A1 - Yamaguchi, Shinjiro A1 - Lenhard, Michael T1 - SLOW MOTION is required for within-plant auxin homeostasis and normal timing of lateral organ initiation at the shoot meristem in Arabidopsis Y1 - 2010 SN - 1040-4651 ER - TY - JOUR A1 - Childs, Liam H. A1 - Witucka-Wall, Hanna A1 - Guenther, Torsten A1 - Sulpice, Ronan A1 - Korff, Maria V. A1 - Stitt, Mark A1 - Walther, Dirk A1 - Schmid, Karl J. A1 - Altmann, Thomas T1 - Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth- related metabolic traits in Arabidopsis thaliana N2 - Background: Natural accessions of Arabidopsis thaliana are characterized by a high level of phenotypic variation that can be used to investigate the extent and mode of selection on the primary metabolic traits. A collection of 54 A. thaliana natural accession-derived lines were subjected to deep genotyping through Single Feature Polymorphism (SFP) detection via genomic DNA hybridization to Arabidopsis Tiling 1.0 Arrays for the detection of selective sweeps, and identification of associations between sweep regions and growth-related metabolic traits. Results: A total of 1,072,557 high-quality SFPs were detected and indications for 3,943 deletions and 1,007 duplications were obtained. A significantly lower than expected SFP frequency was observed in protein-, rRNA-, and tRNA-coding regions and in non- repetitive intergenic regions, while pseudogenes, transposons, and non-coding RNA genes are enriched with SFPs. Gene families involved in plant defence or in signalling were identified as highly polymorphic, while several other families including transcription factors are depleted of SFPs. 198 significant associations between metabolic genes and 9 metabolic and growth-related phenotypic traits were detected with annotation hinting at the nature of the relationship. Five significant selective sweep regions were also detected of which one associated significantly with a metabolic trait. Conclusions: We generated a high density polymorphism map for 54 A. thaliana accessions that highlights the variability of resistance genes across geographic ranges and used it to identify selective sweeps and associations between metabolic genes and metabolic phenotypes. Several associations show a clear biological relationship, while many remain requiring further investigation. Y1 - 2010 UR - http://www.biomedcentral.com/1471-2164/ U6 - https://doi.org/10.1186/1471-2164-11-188 SN - 1471-2164 ER - TY - THES A1 - von Deuster, Carola T1 - Simulations on several scales: Studies on protein-ligand binding kinetics and on the antimicrobial peptide NK-2 Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Disney, Mathias I. A1 - Kalogirou, Vasileios A1 - Lewis, Philip A1 - Prieto-Blanco, Ana A1 - Hancock, Steve A1 - Pfeifer, Marion T1 - Simulating the impact of discrete-return lidar system and survey characteristics over young conifer and broadleaf forests N2 - We present a model-based investigation of the effect of discrete-return lidar system and survey characteristics on the signal recorded over young forest environments. A Monte Carlo ray tracing (MCRT) model of canopy scattering was used to examine the sensitivity of model estimates of lidar-derived canopy height, h(lidar) to signal triggering method, canopy structure, footprint size, sampling density and scanning angle, for broadleaf and conifer canopies of varying density. Detailed 3D models of Scots pine (Pinus sylvestris) and Downy birch (Betula pubescens) were used to simulate lidar response, with minimal assumptions about canopy structure. Use of such models allowed the impact of lidar parameters on canopy height retrieval to be tested under a range of conditions typically not possible in practice. Retrieved h(lidar) was generally found to be an underestimate of 'true' canopy height, h(canopy), but with exceptions. Choice of signal triggering method caused h(lidar), to underestimate h(canopy) by similar to 4% for birch and similar to 7% for pine (up to 66% in extreme cases). Variations in canopy structure resulted on average in underestimation of h(canopy) by 13% for birch and between 29 and 48% for pine depending on age, but with over-estimates in some cases of up to 10%. Increasing footprint diameter from 0.1 to 1 m increased retrieved h(lidar) from significant underestimates of h(canopy) to values indistinguishable from h(canopy). Increased sampling density led to slightly increased values of h(lidar) to close to h(canopy), but not significantly. Increasing scan angle increased h(lidar) by up to 8% for birch, and 19% for pine at a scan angle of 30 degrees. The impact of scan angle was greater for conifers as a result of large variation in crown height. Results showed that interactions between physically modelled (hypothetical) within canopy returns are similar to findings made in other studies using actual lidar systems, and that these modelled returns can depend strongly on the type of canopy and the lidar acquisition characteristics, as well as interactions between these properties. Physical models of laser pulse/canopy interactions may provide additional information on pulse interactions within the canopy, but require validation and testing before they are applied to actual survey planning and logistics. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00344257 U6 - https://doi.org/10.1016/j.rse.2010.02.009 SN - 0034-4257 ER - TY - JOUR A1 - Czech, Andreas A1 - Fedyunin, Ivan A1 - Zhang, Gong A1 - Ignatova, Zoya T1 - Silent mutations in sight : co-variations in tRNA abundance as a key to unravel consequences of silent mutations N2 - Mutations that alter the amino acid sequence are known to potentially exert deleterious effects on protein function, whereas substitutions of nucleotides without amino acid change are assumed to be neutral for the protein's functionality. However, cumulative evidence suggests that synonymous substitutions might also induce phenotypic variability by affecting splicing accuracy, translation fidelity, and conformation and function of proteins. tRNA isoacceptors mediate the translation of codons to amino acids, and asymmetric tRNA abundance causes variations in the rate of translation of each single triplet. Consequently, the effect of a silent point mutation in the coding region could be significant due to differential abundances of the cognate tRNA(s), emphasizing the importance of precise assessment of tRNA composition. Here, we provide an overview of the methods used to quantitatively determine the concentrations of tRNA species and discuss synonymous mutations in the context of tRNA composition of the cell, thus providing a new twist on the detrimental impact of the silent mutations. Y1 - 2010 UR - http://www.rsc.org/Publishing/Journals/mb/index.asp U6 - https://doi.org/10.1039/C004796c SN - 1742-206X ER - TY - JOUR A1 - de Frenne, Pieter A1 - Graae, Bente Jessen A1 - Kolb, Annette A1 - Brunet, Jörg A1 - Chabrerie, Olivier A1 - Cousins, Sara A. O. A1 - Decocq, Guillaume A1 - Dhondt, Rob A1 - Diekmann, Martin A1 - Eriksson, Olof A1 - Heinken, Thilo A1 - Hermy, Martin A1 - Jögar, uelle A1 - Saguez, Robert A1 - Shevtsova, Anna A1 - Stanton, Sharon A1 - Zindel, Renate A1 - Zobel, Martin A1 - Verheyen, Kris T1 - Significant effects of temperature on the reproductive output of the forest herb Anemone nemorosa L. N2 - Climate warming is already influencing plant migration in different parts of the world. Numerous models have been developed to forecast future plant distributions. Few studies, however, have investigated the potential effect of warming on the reproductive output of plants. Understorey forest herbs in particular, have received little attention in the debate on climate change impacts. This study focuses on the effect of temperature on sexual reproductive output (number of seeds, seed mass, germination percentage and seedling mass) of Anemone nemorosa L., a model species for slow colonizing herbaceous forest plants. We sampled seeds of A. nemorosa in populations along a 2400 km latitudinal gradient from northern France to northern Sweden during three growing seasons (2005,2006 and 2008). This study design allowed us to isolate the effects of accumulated temperature (Growing Degree Hours; GDH) from latitude and the local abiotic and biotic environment. Germination and seed sowing trials were performed in incubators, a greenhouse and under field conditions in a forest. Finally, we disentangled correlations between the different reproductive traits of A. nemorosa along the latitudinal gradient. We found a clear positive relationship between accumulated temperature and seed and seedling traits: reproductive output of A. nemorosa improved with increasing GDH along the latitudinal gradient. Seed mass and seedling mass, for instance, increased by 9.7% and 10.4%, respectively, for every 1000 degrees C h increase in GDH. We also derived strong correlations between several seed and seedling traits both under field conditions and in incubators. Our results indicate that seed mass, incubator-based germination percentage (Germ%(Inc)) and the output of germinable seeds (product of number of seeds and Germ%(Inc) divided by 100) from plants grown along a latitudinal gradient (i.e. at different temperature regimes) provide valuable proxies to parameterize key population processes in models. We conclude that (1) climate warming may have a pronounced positive impact on sexual reproduction of A. nemorosa and (2) climate models forecasting plant distributions would benefit from including the temperature sensitivity of key seed traits and population processes. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/03781127 U6 - https://doi.org/10.1016/j.foreco.2009.04.038 SN - 0378-1127 ER - TY - JOUR A1 - Esther, Alexandra A1 - Groeneveld, Juergen A1 - Enright, Neal J. A1 - Miller, Ben P. A1 - Lamont, Byron B. A1 - Perry, George L. W. A1 - Blank, F. Benjamin A1 - Jeltsch, Florian T1 - Sensitivity of plant functional types to climate change : classification tree analysis of a simulation model N2 - Question: The majority of studies investigating the impact of climate change on local plant communities ignores changes in regional processes, such as immigration from the regional seed pool. Here we explore: (i) the potential impact of climate change on composition of the regional seed pool, (ii) the influence of changes in climate and in the regional seed pool on local community structure, and (iii) the combinations of life history traits, i.e. plant functional types (PFTs), that are most affected by environmental changes. Location: Fire-prone, Mediterranean-type shrublands in southwestern Australia. Methods: Spatially explicit simulation experiments were conducted at the population level under different rainfall and fire regime scenarios to determine the effect of environmental change on the regional seed pool for 38 PFTs. The effects of environmental and seed immigration changes on local community dynamics were then derived from community-level experiments. Classification tree analyses were used to investigate PFT- specific vulnerabilities to climate change. Results: The classification tree analyses revealed that responses of PFTs to climate change are determined by specific trait characteristics. PFT-specific seed production and community patterns responded in a complex manner to climate change. For example, an increase in annual rainfall caused an increase in numbers of dispersed seeds for some PFTs, but decreased PFT diversity in the community. Conversely, a simulated decrease in rainfall reduced the number of dispersed seeds and diversity of PFTs. Conclusions: PFT interactions and regional processes must be considered when assessing how local community structure will be affected by environmental change. Y1 - 2010 UR - http://www3.interscience.wiley.com/journal/121642345/home U6 - https://doi.org/10.1111/j.1654-1103.2009.01155.x SN - 1100-9233 ER - TY - JOUR A1 - Scheffler, Ingo T1 - Rote Waldameisen (Formica rufa) und Rauhhautfledermäuse (Pipistrellus nathusii) : eine symbiotische Beziehung? N2 - In einer Wochenstubengesellschaft der Rauhhautfledermaus (Pipistrellus nathusii), in der Schorfheide im Norden Brandenburgs, wurde ein starkes Vorkommen der Roten Waldameise (Formica rufa) festgestellt. Die Fledermäuse waren offensichtlich durch die Anwesenheit der Ameisen nicht beunruhigt. Der ungewöhnlich enge Kontakt zwischen Ameisen und Fledermäusen führte zur Überlegung, dass es regelmässige Interaktionen zwischen Ameisen und Fledermäusen geben könnte, die beiden Seiten Vorteile bieten. Vergleichbare Beziehungen wurden bisher hauptsächlich bei Vögeln als anting beschrieben. Interaktionen zum gegenseitigen Vorteil sind zwischen Fledermäusen und Ameisen bisher kaum beachtet worden, so dass weitere Untersuchungen notwendig sind. Y1 - 2010 ER - TY - JOUR A1 - Voelker, Camilla A1 - Gomez-Porras, Judith Lucia A1 - Becker, Dirk A1 - Hamamoto, Shin A1 - Uozumi, Nobuyuki A1 - Gambale, Franco A1 - Müller-Röber, Bernd A1 - Czempinski, Katrin A1 - Dreyer, Ingo T1 - Roles of tandem-pore K plus channels in plants : a puzzle still to be solved N2 - The group of voltage-independent K+ channels in Arabidopsis thaliana consists of six members, five tandem-pore channels (TPK1-TPK5) and a single K-ir-like channel (KCO3). All TPK/KCO channels are located at the vacuolar membrane except for TPK4, which was shown to be a plasma membrane channel in pollen. The vacuolar channels interact with 14-3-3 proteins (also called General Regulating Factors, GRFs), indicating regulation at the level of protein-protein interactions. Here we review current knowledge about these ion channels and their genes, and highlight open questions that need to be urgently addressed in future studies to fully appreciate the physiological functions of these ion channels. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=1435-8603 U6 - https://doi.org/10.1111/j.1438-8677.2010.00353.x SN - 1435-8603 ER - TY - THES A1 - Gajdanowicz, Pawel T1 - Regulation of voltage-gated plant potassium channels Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Ramírez Aguilar, Santiago Javier T1 - Regulation of respiration in plants : molecular mechanisms in metabolism and in the mitochondrial electron transport chain Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Sezer, Murat A1 - Spricigo, Roberto A1 - Utesch, Tillmann A1 - Millo, Diego A1 - Leimkühler, Silke A1 - Mroginski, Maria A. A1 - Wollenberger, Ursula A1 - Hildebrandt, Peter A1 - Weidinger, Inez M. T1 - Redox properties and catalytic activity of surface-bound human sulfite oxidase studied by a combined surface enhanced resonance Raman spectroscopic and electrochemical approach N2 - Human sulfite oxidase (hSO) was immobilised on SAM-coated silver electrodes under preservation of the native heme pocket structure of the cytochrome b5 (Cyt b5) domain and the functionality of the enzyme. The redox properties and catalytic activity of the entire enzyme were studied by surface enhanced resonance Raman (SERR) spectroscopy and cyclic voltammetry (CV) and compared to the isolated heme domain when possible. It is shown that heterogeneous electron transfer and catalytic activity of hSO sensitively depend on the local environment of the enzyme. Increasing the ionic strength of the buffer solution leads to an increase of the heterogeneous electron transfer rate from 17 s(-1) to 440 s(- 1) for hSO as determined by SERR spectroscopy. CV measurements demonstrate an increase of the apparent turnover rate for the immobilised hSO from 0.85 s(-1) in 100 mM buffer to 5.26 s(-1) in 750 mM buffer. We suggest that both effects originate from the increased mobility of the surface-bound enzyme with increasing ionic strength. In agreement with surface potential calculations we propose that at high ionic strength the enzyme is immobilised via the dimerisation domain to the SAM surface. The flexible loop region connecting the Moco and the Cyt b5 domain allows alternating contact with the Moco interaction site and the SAM surface, thereby promoting the sequential intramolecular and heterogeneous electron transfer from Moco via Cyt b5 to the electrode. At lower ionic strength, the contact time of the Cyt b5 domain with the SAM surface is longer, corresponding to a slower overall electron transfer process. Y1 - 2010 UR - http://www.rsc.org/Publishing/Journals/CP/index.asp U6 - https://doi.org/10.1039/B927226g SN - 1463-9076 ER - TY - JOUR A1 - Burkart, Michael A1 - Alsleben, Katja A1 - Lachmuth, Susanne A1 - Schumacher, Juliane A1 - Hofmann, Ralf A1 - Jeltsch, Florian A1 - Schurr, Frank Martin T1 - Recruitment requirements of the rare and threatened Juncus atratus N2 - The long-term persistence of populations and species depends on the successful recruitment of individuals. The generative recruitment of plants may be limited by a lack of suitable germination and establishment conditions. Establishment limitation may especially be caused by the competitive effect of surrounding dense vegetation, which is believed to restrict the recruitment success of many plant species to small open patches ('safe sites'). We conducted experiments to clarify the roles of germination and seedling establishment as limiting processes in the recruitment of Juncus atratus Krock., a rare and threatened herbaceous perennial river corridor plant in Central Europe. Light intensity had a positive effect on germination. However, some seedlings emerged even in total darkness and the germination rate at 1% light intensity was more than half of that at 60% light intensity. Seedling establishment in the field after 10 weeks was 30% on bare ground, but it was close to zero in grassland. Establishment in the growth chamber after 8 weeks was close to 75% for seedlings that germinated underwater, but only about 35% for seedlings that germinated afloat. Furthermore, establishment decreased with flooding duration on bare ground, but increased with flooding duration in grassland. These data indicate that establishment, rather than germination, is a critical life stage in Central European populations off. atratus. They furthermore indicate that the competition of surrounding vegetation for water limits seedling establishment under field conditions without flooding, largely restricting establishment success to bare ground habitats. In contrast, grassland is more suitable for the recruitment off. atratus than bare ground under prolonged flooding. Grassland may facilitate the establishment off. atratus seedlings during long- lasting floods by supplying oxygen to the soil through aerenchyma. The shift from competition to facilitation in grassland occurred after 30 days of flooding, i.e. within the ontogeny of individual plants. The specific recruitment requirements off. arrows may be a main cause of its rarity in modern Central Europe. In order to prevent regional extinction off. atratus, we suggest maintaining or re-establishing natural hydrodynamics in the species' habitats. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/03672530 U6 - https://doi.org/10.1016/j.flora.2009.08.003 SN - 0367-2530 ER - TY - JOUR A1 - Geißler, Daniel A1 - Charbonnière, Loïc J. A1 - Ziessel, Raymond F. A1 - Butlin, Nathaniel G. A1 - Löhmannsröben, Hans-Gerd A1 - Hildebrandt, Niko T1 - Quantum dot biosensors for ultrasensitive multiplexed diagnostics N2 - Time- and color-resolved detection of Foerster resonance energy transfer (FRET) from luminescent terbium complexes to different semiconductor quantum dots results in a fivefold multiplexed bioassay with sub-picomolar detection limits for all five bioanalytes (see picture). The detection of up to five biomarkers occurs with a sensitivity that is 40-240-fold higher than one of the best-established single-analyte reference assays. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/26737/ U6 - https://doi.org/10.1002/anie.200906399 SN - 1433-7851 ER - TY - THES A1 - Maitrejean, Marie T1 - Proteostasis of the tonoplast : synthesis, sorting and turnover of the potassum channel AtTPK1 Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Riaño-Pachón, Diego Mauricio A1 - Kleessen, Sabrina A1 - Neigenfind, Jost A1 - Durek, Pawel A1 - Weber, Elke A1 - Engelsberger, Wolfgang R. A1 - Walther, Dirk A1 - Selbig, Joachim A1 - Schulze, Waltraud X. A1 - Kersten, Birgit T1 - Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana JF - BMC Genomics N2 - Background: Protein phosphorylation is an important post-translational modification influencing many aspects of dynamic cellular behavior. Site-specific phosphorylation of amino acid residues serine, threonine, and tyrosine can have profound effects on protein structure, activity, stability, and interaction with other biomolecules. Phosphorylation sites can be affected in diverse ways in members of any species, one such way is through single nucleotide polymorphisms (SNPs). The availability of large numbers of experimentally identified phosphorylation sites, and of natural variation datasets in Arabidopsis thaliana prompted us to analyze the effect of non-synonymous SNPs (nsSNPs) onto phosphorylation sites. Results: From the analyses of 7,178 experimentally identified phosphorylation sites we found that: (i) Proteins with multiple phosphorylation sites occur more often than expected by chance. (ii) Phosphorylation hotspots show a preference to be located outside conserved domains. (iii) nsSNPs affected experimental phosphorylation sites as much as the corresponding non-phosphorylated amino acid residues. (iv) Losses of experimental phosphorylation sites by nsSNPs were identified in 86 A. thaliana proteins, among them receptor proteins were overrepresented. These results were confirmed by similar analyses of predicted phosphorylation sites in A. thaliana. In addition, predicted threonine phosphorylation sites showed a significant enrichment of nsSNPs towards asparagines and a significant depletion of the synonymous substitution. Proteins in which predicted phosphorylation sites were affected by nsSNPs (loss and gain), were determined to be mainly receptor proteins, stress response proteins and proteins involved in nucleotide and protein binding. Proteins involved in metabolism, catalytic activity and biosynthesis were less affected. Conclusions: We analyzed more than 7,100 experimentally identified phosphorylation sites in almost 4,300 protein-coding loci in silico, thus constituting the largest phosphoproteomics dataset for A. thaliana available to date. Our findings suggest a relatively high variability in the presence or absence of phosphorylation sites between different natural accessions in receptor and other proteins involved in signal transduction. Elucidating the effect of phosphorylation sites affected by nsSNPs on adaptive responses represents an exciting research goal for the future. KW - Gene Ontology KW - Phosphorylation Site KW - phosphorylated amino acid KW - slim term KW - single nucleotide polymorphism mapping Y1 - 2010 U6 - https://doi.org/10.1186/1471-2164-11-411 SN - 1471-2164 VL - 11 PB - Biomed Central CY - London ER - TY - BOOK A1 - Arndt, Katja Maren T1 - Proteine zur Krebstherapie - Zielen, Steuern, Hemmen : Antrittsvorlesung 2010-12-08 N2 - Biotechnologie, Biologie, Protein Engineering, Therapeutische Peptide, Protein Design, Selektionssysteme / biotechnology, biology, protein enginieering, therapeutic peptides, protein design, selection systems Y1 - 2010 UR - http://info.ub.uni-potsdam.de/multimedia/show_multimediafile.php?mediafile_id=239 PB - Univ.-Bibl. CY - Potsdam ER - TY - JOUR A1 - Yates, Colin J. A1 - Elith, Jane A1 - Latimer, Andrew M. A1 - Le Maitre, David A1 - Midgley, Guy F. A1 - Schurr, Frank Martin A1 - West, Adam G. T1 - Projecting climate change impacts on species distributions in megadiverse South African Cape and Southwest Australian Floristic Regions : Opportunities and challenges N2 - Increasing evidence shows that anthropogenic climate change is affecting biodiversity. Reducing or stabilizing greenhouse gas emissions may slow global warming, but past emissions will continue to contribute to further unavoidable warming for more than a century. With obvious signs of difficulties in achieving effective mitigation worldwide in the short term at least, sound scientific predictions of future impacts on biodiversity will be required to guide conservation planning and adaptation. This is especially true in Mediterranean type ecosystems that are projected to be among the most significantly affected by anthropogenic climate change, and show the highest levels of confidence in rainfall projections. Multiple methods are available for projecting the consequences of climate change on the main unit of interest - the species - with each method having strengths and weaknesses. Species distribution models (SDMs) are increasingly applied for forecasting climate change impacts on species geographic ranges. Aggregation of models for different species allows inferences of impacts on biodiversity, though excluding the effects of species interactions. The modelling approach is based on several further assumptions and projections and should be treated cautiously. In the absence of comparable approaches that address large numbers of species, SDMs remain valuable in estimating the vulnerability of species. In this review we discuss the application of SDMs in predicting the impacts of climate change on biodiversity with special reference to the species-rich South West Australian Floristic Region and South African Cape Floristic Region. We discuss the advantages and challenges in applying SDMs in biodiverse regions with high levels of endemicity, and how a similar biogeographical history in both regions may assist us in understanding their vulnerability to climate change. We suggest how the process of predicting the impacts of climate change on biodiversity with SDMs can be improved and emphasize the role of field monitoring and experiments in validating the predictions of SDMs. Y1 - 2010 UR - http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1442-9993a U6 - https://doi.org/10.1111/j.1442-9993.2009.02044.x SN - 1442-9985 ER - TY - JOUR A1 - Sperfeld, Erik A1 - Schmidtke, Andrea A1 - Gaedke, Ursula A1 - Weithoff, Guntram T1 - Productivity, herbivory, and species traits rather than diversity influence invasibility of experimental phytoplankton communities N2 - Biological invasions are a major threat to natural biodiversity; hence, understanding the mechanisms underlying invasibility (i.e., the susceptibility of a community to invasions by new species) is crucial. Invasibility of a resident community may be affected by a complex but hitherto hardly understood interplay of (1) productivity of the habitat, (2) diversity, (3) herbivory, and (4) the characteristics of both invasive and resident species. Using experimental phytoplankton microcosms, we investigated the effect of nutrient supply and species diversity on the invasibility of resident communities for two functionally different invaders in the presence or absence of an herbivore. With increasing nutrient supply, increased herbivore abundance indicated enhanced phytoplankton biomass production, and the invasion success of both invaders showed a unimodal pattern. At low nutrient supply (i.e., low influence of herbivory), the invasibility depended mainly on the competitive abilities of the invaders, whereas at high nutrient supply, the susceptibility to herbivory dominated. This resulted in different optimum nutrient levels for invasion success of the two species due to their individual functional traits. To test the effect of diversity on invasibility, a species richness gradient was generated by random selection from a resident species pool at an intermediate nutrient level. Invasibility was not affected by species richness; instead, it was driven by the functional traits of the resident and/or invasive species mediated by herbivore density. Overall, herbivory was the driving factor for invasibility of phytoplankton communities, which implies that other factors affecting the intensity of herbivory (e.g., productivity or edibility of primary producers) indirectly influence invasions. Y1 - 2010 UR - http://springerlink.metapress.com/content/100458/ U6 - https://doi.org/10.1007/s00442-010-1594-4 SN - 0029-8549 ER - TY - THES A1 - Nikiforova, Victoria T1 - Processing of metabolic information through biological networks Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Vater, Marianne A1 - Foeller, Elisabeth A1 - Mora, Emanuel C. A1 - Coro, Frank A1 - Russell, Ian J. A1 - Kössl, Manfred T1 - Postnatal maturation of primary auditory cortex in the mustached bat, pteronotus parnellii N2 - The primary auditory cortex (AI) of adult Pteronotus parnellii features a foveal representation of the second harmonic constant frequency (CF2) echolocation call component. In the corresponding Doppler-shifted constant frequency (DSCF) area, the 61 kHz range is over-represented for extraction of frequency-shift information in CF2 echoes. To assess to which degree AI postnatal maturation depends on active echolocation or/and reflects ongoing cochlear maturation, cortical neurons were recorded in juveniles up to postnatal day P29, before the bats are capable of active foraging.At P1-2, neurons in posterior AI are tuned sensitively to low frequencies (22-45 dB SPL, 28-35 kHz). Within the prospective DSCF area, neurons had insensitive responses (>60 dB SPL) to frequencies <40 kHz and lacked sensitive tuning curve tips. Up to P10, when bats do not yet actively echolocate, tonotopy is further developed and DSCF neurons respond to frequencies of 51-57 kHz with maximum tuning sharpness (Q(10dB)) of 57. Between P11 and 20, the frequency representation in AI includes higher frequencies anterior and dorsal to the DSCF area. More multipeaked neurons (33%) are found than at older age. In the oldest group, DSCF neurons are tuned to frequencies close to 61 kHz with Q(10dB) values <= 212, and threshold sensitivity, tuning sharpness and cortical latencies are adult-like. The data show that basic aspects of cortical tonotopy are established before the bats actively echolocate. Maturation of tonotopy, increase of tuning sharpness, and upward shift in the characteristic frequency of DSCF neurons appear to strongly reflect cochlear maturation. Y1 - 2010 UR - http://jn.physiology.org/ U6 - https://doi.org/10.1152/jn.00517.2009 SN - 0022-3077 ER - TY - JOUR A1 - Ansell, Stephen W. A1 - Stenoien, Hans K. A1 - Grundmann, Michael A1 - Schneider, Harald A1 - Hemp, Andreas A1 - Bauer, N. A1 - Russell, S. J. A1 - Vogel, Johannes C. T1 - Population structure and historical biogeography of European Arabidopsis lyrata N2 - Understanding the natural history of model organisms is important for the effective use of their genomic resourses. Arabidopsis lyrata has emerged as a useful plant for studying ecological and evolutionary genetics, based on its extensive natural variation, sequenced genome and close relationship to A. thaliana. We studied genetic diversity across the entire range of European Arabidopsis lyrata ssp. petraea, in order to explore how population history has influenced population structure. We sampled multiple populations from each region, using nuclear and chloroplast genome markers, and combined population genetic and phylogeographic approaches. Within-population diversity is substantial for nuclear allozyme markers (mean P = 0.610, A(e) = 1.580, H-e = 0.277) and significantly partitioned among populations (F- ST = 0.271). The Northern populations have modestly increased inbreeding (F-IS = 0.163 verses F-IS = 0.093), but retain comparable diversity to central European populations. Bottlenecks are common among central and northern Europe populations, indicating recent demographic history as a dominant factor in structuring the European diversity. Although the genetic structure was detected at all geographic scales, two clear differentiated units covering northern and central European areas (F-CT = 0.155) were identified by Bayesian analysis and supported by regional pairwise F-CT calculations. A highly similar geographic pattern was observed from the distribution of chloroplast haplotypes, with the dominant northern haplotypes absent from central Europe. We conclude A. l. petraea's cold-tolerance and preference for disturbed habitats enabled glacial survival between the alpine and Nordic glaciers in central Europe and an additional cryptic refugium. While German populations are probable peri-glacial leftovers, Eastern Austrian populations have diversity patterns possibly compatible with longer-term survival. Y1 - 2010 UR - http://www.nature.com/hdy/archive/index.html U6 - https://doi.org/10.1038/Hdy.2010.10 SN - 0018-067X ER - TY - JOUR A1 - Gehmlich, Katja A1 - Hayess, Katrin A1 - Legler, Christof A1 - Haebel, Sophie A1 - van der Ven, Peter F. M. A1 - Ehler, Elisabeth A1 - Fuerst, Dieter O. T1 - Ponsin interacts with Nck adapter proteins : implications for a role in cytoskeletal remodelling during differentiation of skeletal muscle cells N2 - Skeletal muscle differentiation is a complex process: It is characterised by changes in gene expression and protein composition. Simultaneously, a dramatic remodelling of the cytoskeleton and associated cell-matrix contacts, the costameres, occurs. The expression and localisation of the protein ponsin at cell-matrix contacts marks the establishment of costameres. In this report we show that skeletal muscle cells are characterised by a novel ponsin isoform, which contains a large insertion in its carboxy-terminus. This skeletal muscle-specific module binds the adapter proteins Nck1 and Nck2, and increased co-localisation of ponsin with Nck2 is observed at remodelling cell-matrix contacts of differentiating skeletal muscle cells. Since this ponsin insertion can be phosphorylated, it may adjust the interaction affinity with Nck adapter proteins. The novel ponsin isoform and its interaction with Nck1/2 provide exciting insight into the convergence of signalling pathways at the costameres, and its crucial role for skeletal muscle differentiation and re-generation. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/01719335 U6 - https://doi.org/10.1016/j.ejcb.2009.10.019 SN - 0171-9335 ER - TY - JOUR A1 - Schmidtke, Andrea A1 - Rottstock, Tanja A1 - Gaedke, Ursula A1 - Fischer, Markus T1 - Plant community diversity and composition affect individual plant performance N2 - Effects of plant community diversity on ecosystem processes have recently received major attention. In contrast, effects of species richness and functional richness on individual plant performance, and their magnitude relative to effects of community composition, have been largely neglected. Therefore, we examined height, aboveground biomass, and inflorescence production of individual plants of all species present in 82 large plots of the Jena Experiment, a large grassland biodiversity experiment in Germany. These plots differed in species richness (1-60), functional richness (1-4), and community composition. On average, in more species-rich communities, plant individuals grew taller, but weighed less, were less likely to flower, and had fewer inflorescences. In plots containing legumes, non-legumes were higher and weighed more than in plots without legumes. In plots containing grasses, non-grasses were less likely to flower than in plots without grasses. This indicates that legumes positively and grasses negatively affected the performance of other species. Species richness and functional richness effects differed systematically between functional groups. The magnitude of the increase in plant height with increasing species richness was greatest in grasses and was progressively smaller in legumes, small herbs, and tall herbs. Individual aboveground biomass responses to increasing species richness also differed among functional groups and were positive for legumes, less pronouncedly positive for grasses, negative for small herbs, and more pronouncedly negative for tall herbs. Moreover, these effects of species richness differed strongly between species within these functional groups. We conclude that individual plant performance largely depends on the diversity of the surrounding community, and that the direction and magnitude of the effects of species richness and functional richness differs largely between species. Our study suggests that diversity of the surrounding community needs to be taken into account when interpreting drivers of the performance of individual plants. Y1 - 2010 UR - http://www.springerlink.com/content/067x6r4n36w12184/fulltext.html U6 - https://doi.org/10.1007/s00442-010-1688-z SN - 0029-8549 ER - TY - THES A1 - Zaupa, Alessandro T1 - Physical crosslinking of gelatin : a supramolecular approach to biomaterials T1 - Physikalische Quervernetzung von Gelatine : ein supramolekularer Zugang zu Biomaterialien N2 - This work describes the realization of physically crosslinked networks based on gelatin by the introduction of functional groups enabling specific supramolecular interactions. Molecular models were developed in order to predict the material properties and permit to establish a knowledge-based approach to material design. The effect of additional supramolecular interactions with hydroxyapaptite was then studied in composite materials. The calculated properties are compared to experimental results to validate the models. The models are then further used for the study of physically crosslinked networks. Gelatin was functionalized with desaminotyrosine (DAT) and desaminotyrosyl-tyrosine (DATT) side groups, derived from the natural amino acid tyrosine. These group can potentially undergo to π-π and hydrogen bonding interactions also under physiological conditions. Molecular dynamics (MD) simulations were performed on models with 0.8 wt.-% or 25 wt.-% water content, using the second generation forcefield CFF91. The validation of the models was obtained by the comparison with specific experimental data such as, density, peptide conformational angles and X-ray scattering spectra. The models were then used to predict the supramolecular organization of the polymer chain, analyze the formation of physical netpoints and calculate the mechanical properties. An important finding of simulation was that with the increase of aromatic groups also the number of observed physical netpoints increased. The number of relatively stable physical netpoints, on average zero 0 for natural gelatin, increased to 1 and 6 for DAT and DATT functionalized gelatins respectively. A comparison with the Flory-Rehner model suggested reduced equilibrium swelling by factor 6 of the DATT-functionalized materials in water. The functionalized gelatins could be synthesized by chemoselective coupling of the free carboxylic acid groups of DAT and DATT to the free amino groups of gelatin. At 25 wt.-% water content, the simulated and experimentally determined elastic mechanical properties (e.g. Young Modulus) were both in the order of GPa and were not influenced by the degree of aromatic modification. The experimental equilibrium degree of swelling in water decreased with increasing the number of inserted aromatic functions (from 2800 vol.-% for pure gelatin to 300 vol.-% for the DATT modified gelatin), at the same time, Young’s modulus, elongation at break, and maximum tensile strength increased. It could be show that the functionalization with DAT and DATT influences the chain organization of gelatin based materials together with a controlled drying condition. Functionalization with DAT and DATT lead to a drastic reduction of helical renaturation, that could be more finely controlled by the applied drying conditions. The properties of the materials could then be influenced by application of two independent methods. Composite materials of DAT and DATT functionalized gelatins with hydroxyapatite (HAp) show a drastic reduction of swelling degree. In tensile tests and rheological measurements, the composites equilibrated in water had increased Young’s moduli (from 200 kPa up to 2 MPa) and tensile strength (from 57 kPa up to 1.1 MPa) compared to the natural polymer matrix without affecting the elongation at break. Furthermore, an increased thermal stability from 40 °C to 85 °C of the networks could be demonstrated. The differences of the behaviour of the functionalized gelatins to pure gelatin as matrix suggested an additional stabilizing bond between the incorporated aromatic groups to the hydroxyapatite. N2 - Diese Arbeit beschreibt die Entwicklung von durch spezifische physikalische Wechselwirkungen quervernetzten Gelatine-basierten Materialien. Dazu wurden zunächst Computermodelle entwickelt, mit denen Eigenschaften der Materialien vorhergesagt werden sollten, um so eine wissensbasierte Entwicklung zu ermöglichen, um dann die Ergebnisse mit experimentellen Daten zu vergleichen und die Materialien und Modelle als Grundlage für weitere Entwicklungen zu nutzen. Gelatine wurde mit Desaminotyrosin (DAT) und Desaminotyrosyltyrosin (DATT) funktionalisiert, die sich von der natürlichen Aminosäure Tyrosin ableiten. Diese Gruppen können potentiell π-π Wechselwirkungen und Wasserstoffbrückenbindungen auch unter physiologischen Bedingungen eingehen. Es wurden Computersimulationen der Materialien mittels Moleküldynamik durchgeführt, wobei Modelle mit 0.8 Gew.-% und 25 Gew.-% Wassergehalt betrachtet wurden. Die Validierung der Modelle erfolgte durch Vergleich der errechneten mit experimentellen Daten wie z.B. der Dichte, Bindungswinkeln sowie Röntgenstreuungsspektren. Die Modelle wurden dann zur Vorhersage der molekularen Organisation der Polymerketten, Formierung physikalischer Netzpunkte und Berechnung der mechanischen Eigenschaften eingesetzt. Die Funktionalisierung der Gelatine mit DAT bzw. DATT führten wie gewünscht zur Ausbildung physikalischer Netzpunkte durch π-π Wechselwirkungen und Wasserstoffbrücken¬bindungen. Ein Schlüsselergebnis der Simulationen war, dass mit zunehmender Zahl an aromatischen Gruppen auch eine Zunahme der physikalischen Netzpunkte beobachtet werden konnte. Die funktionalisierten Gelatinen konnten durch chemoselektive Reaktion der Aminogruppen der Gelatine mit den freien Carboxylgruppen von DAT und DATT hergestellt werden. Materialien mit 25 Gew.-% Wassergehalt hatten in der Simulation und im Experiment mechanische Eigenschaften derselben Größenordnung (z.B. E-Moduln im unteren GPa-Bereich). Der Quellungsgrad der Materialien im Experiment nahm mit zunehmender Zahl an aromatische Gruppen ab (von 2800 Vol.-% auf 300 Vol.-%), wobei der Elastizitätsmodul, die Bruchdehnung sowie die Zugfestigkeit zunahmen. Die Funktionalisierung der Gelatine ist eine chemische Methode, um die Kettenanordnung auf molekularer Ebene zu beeinflussen, während die genaue Kontrolle der Trocknungs¬bedinguungen von Gelatine-basierten Materialien eine physikalische Methode mit demselben Ziel ist. Es konnte gezeigt werden, dass die Funktionalisierung von Gelatine mit DAT oder DATT zu einer stark verminderten Helixausbildungstendenz, die jedoch durch Variation der Trocknunsgbedingungen noch fein abgestimmt werden konnte. Somit konnten die mechanischen Eigenschaften von Filmen aus funktionlisierter Gelatine mit zwei unabhängigen Methoden eingestellt werden. Komposite der mit DAT oder DATT funktionalisierten Gelatine und Hydroxyapatit (HAp) zeigten deutlich verringerter Quellung. In Zugdehnungsexperimenten und rheologischen Untersuchungen zeigten die Komposite im Gleichgewichtsquellungszustand erhöhte Elastizitätsmoduln (von 200 kPa auf bis zu 2 MPa) und Zugfestigkeit (von 57 kPa auf bis zu 1.1 MPa). Darüber hinaus konnte die Übergangstemperatur Tc deutlich gesteigert werden (von ca. 40 °C auf > 85 °C). Dieses Verhalten ließ sich auf stabilisierende Bindungen zwischen den aromatische Gruppen und dem HAp zurückführen. KW - Physikalische Quervernetzung KW - Supramolekularen Wechselwirkung KW - Molekulare Modellierung KW - Biomaterialien KW - Gelatine KW - Komposite KW - Hydroxyapatit KW - Physical Network KW - Supramolecular Interaction KW - Molecular modeling KW - Biomaterial KW - Gelatin KW - Composite KW - Hydroxyapatite Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-52888 ER - TY - JOUR A1 - Kummer, Volker A1 - Hanelt, Dorothea A1 - Hanelt, Peter A1 - Jage, Horst A1 - John, Heino A1 - Richter, Heidrun A1 - Richter, Udo A1 - Schultz, Burkhard T1 - Phyllactinia hippophaës (Erysiphales) rediscovered in Germany N2 - The Erysiphales species Phyllactinia hippophaës Thuem. ex S. Blumer was found for the fi rst time on cultivated Sea Buckthorn (Hippophaë rhamnoides L.) near Großkayna (Saxony-Anhalt) in October 2009. This fungus was considered to be extinct in Germany. Intensive searching in Saxony-Anhalt and the Potsdam area (Brandenburg) yielded many additional records, most of them from former brown coal mining areas or in Sea Buckthorn plantations. Y1 - 2010 SN - 1641-8180 ER - TY - JOUR A1 - Zhang, Fuzhong Z. A1 - Timm, Katharina A. A1 - Arndt, Katja Maren A1 - Woolley, G. Andrew T1 - Photocontrol of Coiled-Coil Proteins in Living Cells N2 - Light switching of the activity of a coiled-coil protein, the AP-1 transcription factor, in living cells was made possible by the introduction of a designed azobenzene-cross-linked dominant negative peptide, XAFosW (red and yellow in the picture). In the dark, XAFosW showed decreased helical content and decreased affinity for target Jun proteins (green); irradiation at 365 nm enhanced helicity and target affinity. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/26737/ U6 - https://doi.org/10.1002/anie.201000909 SN - 1433-7851 ER - TY - JOUR A1 - Bauer, Barbara A1 - Jordan, Ferenc A1 - Podani, János T1 - Node centrality indices in food webs : rank orders versus distributions N2 - Network analysis examines the role of species in ecological communities. The most common approach involves measurement of centrality of species or other groups of individuals based on their topological positions in food webs, followed by establishing the rank order of importance of these groups. However, ranking may differ considerably with indices of centrality and therefore comparison of rank orders is essential to obtain more meaningful results on species performance. Since ranking ignores absolute differences between centrality values, species orders may neglect important structural information in food webs. Consequently, simultaneous examination of the distribution of index values is inevitable. Hierarchical clustering and consensus generation revealed that rank orders of centrality exhibit a similar pattern over six example food webs, while distributions differ not only with indices because their relationships are largely inconsistent with food webs as well. Therefore, optimal analysis of networks and the selection of keystone species in any ecological study should rely upon both of these procedures. Similar conclusions are drawn from the detailed evaluation of a sample food web from the Florida Bay. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/1476945X U6 - https://doi.org/10.1016/j.ecocom.2009.11.006 SN - 1476-945X ER - TY - JOUR A1 - Jage, Horst A1 - Klenke, F. A1 - Kummer, Volker T1 - Neufunde und bemerkenswerte Bestätigungen von phytoparasitischen Kleinpilzen in Deutschland - Teil 1 : Erysiphales (Echte Mehltaupilze) N2 - Members of the Erysiphales are conspicuous phytoparasitic microfungi during the late summer and autumn period. A lot of literature sources were evaluated by BRANDENBURGER & HAGEDORN (2006). They give an overview of the floristic data of the separate Erysiphales-host-combinations in the individual federal states of Germany. Unfortunately, most of the articles published after 2000 and especially many unpublished data assembled since 1970s have not been included. Therefore the present list is a supplementa-tion to BRANDENBURGER & HAGEDORN (2006). A total of 1.994 new records of Erysiphales-host-combinations from all federal states of Germany the Saarland excluded have been listed. Most of them are from Brandenburg, Saxony and Saxony-Anhalt. In contrast to that obvious deficits clearly exist in the federal states of Bremen, Hamburg, Hessen and Mecklenburg-Western Pomerania. Compared to BRANDENBURGER & HAGEDORN (2006) only the first record of the respective Erysiphales-host-combination in the particular federal states of Germany is given. If the last record of an Erysiphales-host-combination is older than 25 years in some cases a new record is also listed. Since 2000 17 Erysiphales taxa have been collected in Germany for the first time. All in all 97 matrices novae especially different cultivated plants are compiled. 49 resp. 59 fungus-host-combinations are new for Europe and Central Europe and furthermore 199 combinations are new for Germany. 54 records are the first exact data for the occurrence of the fungus- host-combination in Germany. These combinations have been listed globally in the literature for Germany until today but without any exact data. A part of the given records offer double infections with other phytoparasitic micro-fungi. These infections have been represented summarily. A list of fungus-host-combinations published in the literature but not clearly recorded for Germany is given. Y1 - 2010 SN - 1436-2317 ER - TY - THES A1 - Zrenner, Rita T1 - Molekularphysiologische Untersuchung primärer Stoffwechselwege : der Einfluss des Kohlenhydrat- und Nukleotidstoffwechsels auf das Pflanzenwachstum Y1 - 2010 ER - TY - THES A1 - Ketmaier, Valerio T1 - Molecular biogeography of southern European species : Darstellung der publizierten Forschungsergebnissen unter Berücksichtigung des allgemeinen Kenntnisstandes und Einordnung in den wissenschaftlichen Gesamtzusammenhang Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Aziz-ud-Din, Aziz T1 - Molecular and physiological approaches towards growth-effecting genes in Arabidopsis thaliana (L.) Heynh. Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Sieber, Matthias T1 - Modulatoren des Calcineurin-NFATc-Signalweges in humanen TH-Zellen T1 - Modulators of the calcineurin-NFATc signalling pathway in human T helper cells N2 - Die Ca2+/Calmodulin-aktivierte Serin/Threonin-Phosphatase Calcineurin ist ein Schlüsselmolekül des T-Zell-Rezeptorabhängigen Signalnetzwerkes. Calcineurin aktiviert die Transkriptionsfaktoren der NFATc-Familie durch Dephosphorylierung und reguliert darüber die Expression wichtiger Zytokine und Oberflächenproteine. Die Aktivität von Calcineurin wird durch zahlreiche endogene Proteine moduliert und ist Angriffspunkt der immunsuppressiven Substanzen Cyclosporin A und FK506. In dieser Arbeit wurde der alternative niedermolekulare Calcineurin-NFATc-Inhibitor NCI3 hinsichtlich seiner Effekte auf T-Zell-Rezeptor-abhängige Signalwege charakterisiert. Die Ergebnisse zeigen, daß das Pyrazolopyrimidinderivat NCI3 nichttoxisch und zellmembranpermeabel ist. In T-Zell-Rezeptor-stimulierten primären humanen TH-Zellen unterdrückt NCI3 die Proliferation und IL-2-Produktion (IC50-Wert ~4 µM), da die Dephosphorylierung von NFATc und die anschließende nukleäre Translokation gehemmt wird. NCI3 inhibiert die calcineurinabhängige NFAT- und NF-κB-, aber nicht die AP-1-kontrollierte Reprtergenexpression, in mikromolaren Konzentrationen (IC50-Werte 2 bzw. 7 µM). Im Gegensatz zu Cyclosporin A stört NCI3 nicht die Phosphataseaktivität von Calcineurin, sondern interferiert mit der Calcineurin-NFATc-Bindung. Ein wichtiges endogenes Modulatorprotein für die Calcineurinaktivität ist RCAN1, das vermutlich den Calcineurin-NFATc-Signalweg über einen negativen Rückkopplungsmechanismus reguliert. Hier wurde gezeigt, daß RCAN1 in humanen TH-Zellen exprimiert wird. Die Spleißvariante RCAN1-1 ist in ruhenden T-Zellen basal exprimiert und wird nicht durch T-Zell-Rezeptor-Stimulierung in seiner Expression verändert. RCAN1-4 dagegen ist in ruhenden Zellen kaum zu detektieren und wird stimulierungsabhängig induziert. Durch die Verwendung Calcineurin-NFATc-spezifischer Inhibitoren wie NCI3 wurde gezeigt, daß die RCAN1-4-Induktion durch diesen Signalweg limitiert ist. Die in dieser Arbeit gewonnenen Daten und Erkenntnisse tragen dazu bei, das Verständnis der Funktion und Regulation von Calcineurin in T-Zellen zu vertiefen. N2 - The Ca2+/calmodulin dependent serine/threonine phosphatase calcineurin is a key molecule in the T cell receptor dependent signalling network. Calcineurin dephosphorylates and thereby activates the transcription factors of the NFATc family that, among others, control the expression of important cytokines and cell surface molecules. The activity of Calcineurin is modulated by several endogenous proteins and is inhibited by the immunosuppressants cyclosporine A and FK506. Here, the novel low molecular weight inhibitor NCI3 was characterized in respect to its effects on T cell receptor dependent signalling. The results of this work show, that the pyrazolopyrimidine derivate NCI3 is nontoxic and permeates the cell membrane. Upon TCR stimulation NCI3 suppresses T cell proliferation and IL-2 production of primary human TH cells with IC50 values of ~4 µM by blocking the dephosphorylation and subsequent nuclear translocation of NFATc. NCI3 conse-quently inhibits calcineurin dependent NFAT- and NF-κB-, but not AP-1-controlled reporter gene expression, in micromolar concentrations (IC50 values 2 and 7 µM, respectively). In opposite to cyclosporine A and FK506, NCI3 does not interfere with the phosphatase activity of calcineurin but rather disturbs the calcineurin-NFATc interaction. A major endogenous modulator of calcineurin is the protein RCAN1, which is supposed to regulate calcineurin-NFATc signalling in a negative feedback loop. The presented data show that RCAN1 is expressed in human TH cells. The splice variant RCAN1-1 is basally expressed in resting T cells, and its expression levels are not changed by T cell receptor stimulation. Expression of RCAN1-4, on the other hand, is nearly undetectable in resting TH cells and is induced upon cell stimulation. By using calcineurin-NFATc specific inhibitors such as NCI3 it could be shown that RCAN1-4 induction is limited by this pathway. This work provides a comprehensive characterization of the novel inhibitor NCI3 and insights into the regulation of calcineurin by RCAN1 in human TH cells. KW - Calcineurin KW - NFAT KW - RCAN1 KW - Cyclosporin A KW - NCI3 KW - calcineurin KW - NFAT KW - RCAN1 KW - cyclosporin A KW - NCI3 Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-44676 ER - TY - JOUR A1 - Sunna, Anwar T1 - Modular organisation and functional analysis of dissected modular beta-mannanase CsMan26 from Caldicellulosiruptor Rt8B.4 N2 - CsMan26 from Caldicellulosiruptor strain Rt8.B4 is a modular beta-mannanase consisting of two N-terminal family 27 carbohydrate-binding modules (CBMs), followed by a family 35 CBM and a family 26 glycoside hydrolase catalytic module (mannanase). A functional dissection of the full-length CsMan26 and a comprehensive characterisation of the truncated derivatives were undertaken to evaluate the role of the CBMs. Limited proteolysis was used to define biochemically the boundaries of the different structural modules in CsMan26. The full-length CsMan26 and three truncated derivatives were produced in Escherichia coli, purified and characterised. The systematic removal of the CBMs resulted in a decrease in the optimal temperature for activity and in the overall thermostability of the derivatives. Kinetic experiments indicated that the presence of the mannan-specific family 27 CBMs increased the affinity of the enzyme towards the soluble galactomannan substrate but this was accompanied by lower catalytic efficiency. The full-length CsMan26 and its truncated derivatives were unable to hydrolyse mannooligosaccharides with degree of polymerisation (DP) of three or less. The major difference in the hydrolysis pattern of larger mannooligosaccharides (DP > 3) by the derivatives was determined by their abilities to further hydrolyse the intermediate sugar mannotetraose. Y1 - 2010 UR - http://www.springerlink.com/content/100457 U6 - https://doi.org/10.1007/s00253-009-2242-y SN - 0175-7598 ER - TY - JOUR A1 - Silva-Iturriza, Adriana A1 - Ketmaier, Valerio A1 - Tiedemann, Ralph T1 - Mitochondrial DNA suggests multiple colonizations of central Philippine islands (Boracay, Negros) by the sedentary Philippine bulbul Hypsipetes philippinus guimarasensis (Aves) N2 - In this study, we have used fragments of three mitochondrial genes (Control Region, CR; transfer RNA for methionine, tRNA-Met; NADH dehydrogenase subunit 2, ND2 for a total of 1066 bp) to reconstruct the phylogeographic history of the endemic Philippine bulbul (Hypsipetes philippinus) at the scale of the central area of the Philippine archipelago. The study includes two of the five recognized subspecies (guimarasensis and mindorensis), 7 populations and 58 individuals. Multiple phylogenetic and network analyses support the existence of two reciprocally monophyletic maternal lineages corresponding to the two named subspecies. Molecular clock estimates indicate that the split between the two subspecies is consistent with the Pleistocene geological history of the archipelago. Patterns of relationships within guimarasensis are biogeographically less clear. Here, a combination of vicariance and dispersal needs to be invoked to reconcile the molecular data with the geographical origin of samples. In particular, the two islands Boracay and Negros host mitochondrial lineages that do not form monophyletic clusters. Our genetic data suggest multiple independent colonization events for these locations. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0947-5745 U6 - https://doi.org/10.1111/j.1439-0469.2010.00566.x SN - 0947-5745 ER - TY - JOUR A1 - Wiemann, Annika A1 - Andersen, Liselotte W. A1 - Berggren, Per A1 - Siebert, Ursula A1 - Benke, Harald A1 - Teilmann, Jonay A1 - Lockyer, Christina A1 - Pawliczka, Iwona A1 - Skora, Krysztof A1 - Roos, Aanna A1 - Lyrholm, Thomas A1 - Paulus, Kirsten B. A1 - Ketmaier, Valerio T1 - Mitochondrial Control Region and microsatellite analyses on harbour porpoise (Phocoena phocoena) unravel population differentiation in the Baltic Sea and adjacent waters N2 - The population status of the harbour porpoise (Phocoena phocoena) in the Baltic area has been a continuous matter of debate. Here we present the by far most comprehensive genetic population structure assessment to date for this region, both with regard to geographic coverage and sample size: 497 porpoise samples from North Sea, Skagerrak, Kattegat, Belt Sea, and Inner Baltic Sea were sequenced at the mitochondrial Control Region and 305 of these specimens were typed at 15 polymorphic microsatellite loci. Samples were stratified according to sample type (stranding vs. by- caught), sex, and season (breeding vs. non-breeding season). Our data provide ample evidence for a population split between the Skagerrak and the Belt Sea, with a transition zone in the Kattegat area. Among other measures, this was particularly visible in significant frequency shifts of the most abundant mitochondrial haplotypes. A particular haplotype almost absent in the North Sea was the most abundant in Belt Sea and Inner Baltic Sea. Microsatellites yielded a similar pattern (i.e., turnover in occurrence of clusters identified by STRUCTURE). Moreover, a highly significant association between microsatellite assignment and unlinked mitochondrial haplotypes further indicates a split between North Sea and Baltic porpoises. For the Inner Baltic Sea, we consistently recovered a small, but significant separation from the Belt Sea population. Despite recent arguments that separation should exceed a predefined threshold before populations shall be managed separately, we argue in favour of precautionary acknowledging the Inner Baltic porpoises as a separate management unit, which should receive particular attention, as it is threatened by various factors, in particular local fishery measures. Y1 - 2010 UR - http://www.springerlink.com/content/105709 U6 - https://doi.org/10.1007/s10592-009-0023-x SN - 1566-0621 ER - TY - JOUR A1 - Graf, Philipp A1 - Dolzblasz, Alicja A1 - Würschum, Tobias A1 - Lenhard, Michael A1 - Pfreundt, Ulrike A1 - Laux, Thomas T1 - MGOUN1 encodes an Arabidopsis type Ib DNA topoisomerase required in stem cell regulation and to maintain develpmentally regulated gene silencing Y1 - 2010 SN - 1040-4651 ER - TY - THES A1 - Hüge, Jan T1 - Metabolic profiling of cyanobacteria with special emphasis towards inorganic carbon limitation of Synechocystis sp. PCC 6803 Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Frasca, Stefano A1 - von Graberg, Till A1 - Feng, Jiu-Ju A1 - Thomas, Arne A1 - Smarsly, Bernd M. A1 - Weidinger, Inez M. A1 - Scheller, Frieder W. A1 - Hildebrandt, Peter A1 - Wollenberger, Ursula T1 - Mesoporous indium tin oxide as a novel platform for bioelectronics N2 - Stable immobilization and reversible electrochemistry of cytochrome c in a tranparent indium tin oxide film with a well-defined mesoporosity (mpITO) is demonstrated. the transparency and good conductivity, in combination with the large surface area of mpITO, allow the incorporation of a high amount of elelctroactive biomolecules and their electrochemical and spectroscopic investigation. UV/Vis and resonance Raman spectroscopy, in combination with direct protein voltammetry are employed for the characterization of cytochrome c immobilized in the mpITO and reveal no perturbant of the structural of the integrity of the redox protein. The potential of this modified material as a biosensor detection of superoxide anions is also demonstrated. Y1 - 2010 UR - http://www3.interscience.wiley.com/journal/122208635/home U6 - https://doi.org/10.1002/cctc.201000047 SN - 1867-3880 ER - TY - GEN A1 - Plath, Martin A1 - Hermann, Bernd A1 - Schröder, Christine A1 - Riesch, Rüdiger A1 - Tobler, Michael A1 - García de León, Francisco J. A1 - Schlupp, Ingo A1 - Tiedemann, Ralph T1 - Locally adapted fish populations maintain small-scale genetic differentiation despite perturbation by a catastrophic flood event N2 - Background: Local adaptation to divergent environmental conditions can promote population genetic differentiation even in the absence of geographic barriers and hence, lead to speciation. Perturbations by catastrophic events, however, can distort such parapatric ecological speciation processes. Here, we asked whether an exceptionally strong flood led to homogenization of gene pools among locally adapted populations of the Atlantic molly (Poecilia mexicana, Poeciliidae) in the Cueva del Azufre system in southern Mexico, where two strong environmental selection factors (darkness within caves and/or presence of toxic H2S in sulfidic springs) drive the diversification of P. mexicana. Nine nuclear microsatellites as well as heritable female life history traits (both as a proxy for quantitative genetics and for trait divergence) were used as markers to compare genetic differentiation, genetic diversity, and especially population mixing (immigration and emigration) before and after the flood. Results: Habitat type (i.e., non-sulfidic surface, sulfidic surface, or sulfidic cave), but not geographic distance was the major predictor of genetic differentiation. Before and after the flood, each habitat type harbored a genetically distinct population. Only a weak signal of individual dislocation among ecologically divergent habitat types was uncovered (with the exception of slightly increased dislocation from the Cueva del Azufre into the sulfidic creek, El Azufre). By contrast, several lines of evidence are indicative of increased flood-induced dislocation within the same habitat type, e.g., between different cave chambers of the Cueva del Azufre. Conclusions: The virtual absence of individual dislocation among ecologically different habitat types indicates strong natural selection against migrants. Thus, our current study exemplifies that ecological speciation in this and other systems, in which extreme environmental factors drive speciation, may be little affected by temporary perturbations, as adaptations to physico-chemical stressors may directly affect the survival probability in divergent habitat types. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - paper 162 Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-48599 ER - TY - JOUR A1 - Weithoff, Guntram A1 - Moser, Michael A1 - Kamjunke, Norbert A1 - Gaedke, Ursula A1 - Weisse, Thomas T1 - Lake morphometry and wind exposure may shape the plankton community structure in acidic mining lakes N2 - Acidic mining lakes (pH <3) are specific habitats exhibiting particular chemical and biological characteristics. The species richness is low and mixotrophy and omnivory are common features of the plankton food web in such lakes. The plankton community structure of mining lakes of different morphometry and mixing type but similar chemical characteristics (Lake 130, Germany and Lake Langau, Austria) was investigated. The focus was laid on the species composition, the trophic relationship between the phago-mixotrophic flagellate Ochromonas sp. and bacteria and the formation of a deep chlorophyll maximum along a vertical pH-gradient. The shallow wind-exposed Lake 130 exhibited a higher species richness than Lake Langau. This increase in species richness was made up mainly by mero-planktic species, suggesting a strong benthic/littoral - pelagic coupling. Based on the field data from both lakes, a nonlinear, negative relation between bacteria and Ochromonas biomass was found, suggesting that at an Ochromonas biomass below 50 mu g CL-1. the grazing pressure on bacteria is low and with increasing Ochromonas biomass bacteria decline. Furthermore, in Lake Langau, a prominent deep chlorophyll maximum was found with chlorophyll concentrations ca. 50 times higher than in the epilimnion which was build up by the euglenophyte Lepocinclis sp. We conclude that lake morphometry, and specific abiotic characteristics such as mixing behaviour influence the community structure in these mining lakes. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00759511 U6 - https://doi.org/10.1016/j.limno.2009.11.002 SN - 0075-9511 ER - TY - THES A1 - Hummel, Jan Vitus T1 - Knowledge discovery from mass spectroscopy data Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Eriksson, Sven A1 - Stransfeld, Lena A1 - Adamski, Nikolai Maria A1 - Breuninger, Holger A1 - Lenhard, Michael T1 - KLUH/CYP78A5-dependent growth signaling coordinates floral organ growth in Arabidopsis Y1 - 2010 SN - 0960-9822 ER - TY - JOUR A1 - Vilca-Quispe, Augusto A1 - Ponce-Soto, Luis Alberto A1 - Winck, Flavia Vischi A1 - Marangoni, Sergio T1 - Isolation and characterization of a new serine protease with thrombin-like activity (TLBm) from the venom of the snake Bothrops marajoensis N2 - The thrombin-like serine protease TLBm from Bothrops marajoensis was isolated in one chromatographic step in reverse phase HPLC. Its molecular mass was 33239.95 Da, as based on the determined primary structure and confirmed experimentally by MALDI-TOF mass spectrometry (33332.5 Da) and it contains 12 half-cysteine residues. This TLBm exhibited high specificity for BA rho NA, Michaelis-Menten behavior with K-m 2.3 x 10(-1) M and the V-max 0.52 x 10(-1) nmoles rho-NA/lt/min for this substrate. TLBm also showed ability to coagulate bovine fibrinogen and was inhibited by soybean trypsin inhibitor, EDTA and S(Dm) from the serum of the species Didelphis marsupialis. The primary structure of TLBm showed the presence of His(45), Asp(103) and Ser(228) residues in the corresponding positions of the catalytic triad established in the serine proteases and Ser(228) are inhibited by phenylmethylsulfonyl fluoride (PMSF). Amino acid analysis showed a high content of Asp, Glu, Gly, Set, Ala and Pro as well as 12 half-cysteine residues and calculated pI of 6.47; TLBm presented 285 amino acid residues. In this work, we investigated the ability of TLBm to degrade fibrinogen and we observed that it is able to cause alpha- and beta-chain cleavage. Enzymatic as well as the platelet aggregation activities were strongly inhibited when incubated with PMSF, a specific inhibitor of serine protease. Also, TLBm induced platelet aggregation in washed and platelet-rich plasma, and in both cases, PMSF inhibited its activity. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00410101 U6 - https://doi.org/10.1016/j.toxicon.2009.11.006 SN - 0041-0101 ER - TY - JOUR A1 - Zhang, Wanjiao A1 - Urban, Alexander A1 - Mihara, Hisaaki A1 - Leimkühler, Silke A1 - Kurihara, Tatsuo A1 - Esaki, Nobuyoshi T1 - IscS functions as a primary sulfur-donating enzyme by interacting specifically with MoeB and MoaD in the biosynthesis of molybdopterin in escherichia coli N2 - The persulfide sulfur formed on an active site cysteine residue of pyridoxal 5'-phosphate-dependent cysteine desulfurases is subsequently incorporated into the biosynthetic pathways of a variety of sulfur-containing cofactors and thionucleosides. In molybdenum cofactor biosynthesis, MoeB activates the C terminus of the MoaD subunit of molybdopterin (MPT) synthase to form MoaD-adenylate, which is subsequently converted to a thiocarboxylate for the generation of the dithiolene group of MPT. It has been shown that three cysteine desulfurases (CsdA, SufS, and IscS) of Escherichia coli can transfer sulfur from L-cysteine to the thiocarboxylate of MoaD in vitro. Here, we demonstrate by surface plasmon resonance analyses that IscS, but not CsdA or SufS, interacts with MoeB and MoaD. MoeB and MoaD can stimulate the IscS activity up to 1.6-fold. Analysis of the sulfuration level of MoaD isolated from strains defective in cysteine desulfurases shows a largely decreased sulfuration level of the protein in an iscS deletion strain but not in a csdA/sufS deletion strain. We also show that another iscS deletion strain of E. coli accumulates compound Z, a direct oxidation product of the immediate precursor of MPT, to the same extent as an MPT synthase-deficient strain. In contrast, analysis of the content of compound Z in Delta csdA and Delta sufS strains revealed no such accumulation. These findings indicate that IscS is the primary physiological sulfur-donating enzyme for the generation of the thiocarboxylate of MPT synthase in MPT biosynthesis. Y1 - 2010 UR - http://www.jbc.org/ U6 - https://doi.org/10.1074/jbc.M109.082172 SN - 0021-9258 ER - TY - THES A1 - Musialak-Lange, Magdalena T1 - Investigating novel potential regulators of phosphate stress responses in Arabidopsis thaliana Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Esther, Alexandra T1 - Investigating mechanisms maintaining plant species diversity in fire prone Mediterranean-type vegetation using spatially-explicit simulation models T1 - Untersuchung von Mechanismen zum Erhalt von Pflanzenartendiversität in feuergeprägter mediterraner Vegetation durch räumlich explizite Simulationsmodelle N2 - Fire prone Mediterranean-type vegetation systems like those in the Mediterranean Basin and South-Western Australia are global hot spots for plant species diversity. To ensure management programs act to maintain these highly diverse plant communities, it is necessary to get a profound understanding of the crucial mechanisms of coexistence. In the current literature several mechanisms are discussed. The objective of my thesis is to systematically explore the importance of potential mechanisms for maintaining multi-species, fire prone vegetation by modelling. The model I developed is spatially-explicit, stochastic, rule- and individual-based. It is parameterised on data of population dynamics collected over 18 years in the Mediterranean-type shrublands of Eneabba, Western Australia. From 156 woody species of the area seven plant traits have been identified to be relevant for this study: regeneration mode, annual maximum seed production, seed size, maximum crown diameter, drought tolerance, dispersal mode and seed bank type. Trait sets are used for the definition of plant functional types (PFTs). The PFT dynamics are simulated annual by iterating life history processes. In the first part of my thesis I investigate the importance of trade-offs for the maintenance of high diversity in multi-species systems with 288 virtual PFTs. Simulation results show that the trade-off concept can be helpful to identify non-viable combinations of plant traits. However, the Shannon Diversity Index of modelled communities can be high despite of the presence of ‘supertypes’. I conclude, that trade-offs between two traits are less important to explain multi-species coexistence and high diversity than it is predicted by more conceptual models. Several studies show, that seed immigration from the regional seed pool is essential for maintaining local species diversity. However, systematical studies on the seed rain composition to multi-species communities are missing. The results of the simulation experiments, as presented in part two of this thesis, show clearly, that without seed immigration the local species community found in Eneabba drifts towards a state with few coexisting PFTs. With increasing immigration rates the number of simulated coexisting PFTs and Shannon diversity quickly approaches values as also observed in the field. Including the regional seed input in the model is suited to explain more aggregated measures of the local plant community structure such as species richness and diversity. Hence, the seed rain composition should be implemented in future studies. In the third part of my thesis I test the sensitivity of Eneabba PFTs to four different climate change scenarios, considering their impact on both local and regional processes. The results show that climate change clearly has the potential to alter the number of dispersed seeds for most of the Eneabba PFTs and therefore the source of the ‘immigrants’ at the community level. A classification tree analysis shows that, in general, the response to climate change was PFT-specific. In the Eneabba sand plains sensitivity of a PFT to climate change depends on its specific trait combination and on the scenario of environmental change i.e. development of the amount of rainfall and the fire frequency. This result emphasizes that PFT-specific responses and regional process seed immigration should not be ignored in studies dealing with the impact of climate change on future species distribution. The results of the three chapters are finally analysed in a general discussion. The model is discussed and improvements and suggestions are made for future research. My work leads to the following conclusions: i) It is necessary to support modelling with empirical work to explain coexistence in species-rich plant communities. ii) The chosen modelling approach allows considering the complexity of coexistence and improves the understanding of coexistence mechanisms. iii) Field research based assumptions in terms of environmental conditions and plant life histories can relativise the importance of more hypothetic coexistence theories in species-rich systems. In consequence, trade-offs can play a lower role than predicted by conceptual models. iv) Seed immigration is a key process for local coexistence. Its alteration because of climate change should be considered for prognosis of coexistence. Field studies should be carried out to get data on seed rain composition. N2 - Feuer geprägte, mediterrane Vegetationstypen, wie sie im Mittelmeerraum und Süd-West Australien zu finden sind, gelten als globale „hotspots“ für Pflanzendiversität. Um sicher zu stellen, dass Managementprogramme zum Erhalt dieser hoch diversen Pflanzengesellschaften zielgerichtet beitragen, ist ein profundes Verständnis der wesentlichen Koexistenzmechanismen notwendig. In der aktuellen Literatur werden verschiedene Mechanismen diskutiert. Das Ziel meiner Doktorarbeit ist es, die Bedeutung der Mechanismen für den Erhalt der artenreichen, feuergeprägten Vegetation anhand eines Modells systematisch zu untersuchen. Das von mir dafür entwickelte Modell ist räumlich-explizit, stochastisch und regel- und individuenbasiert. Es ist unter Zuhilfenahme von Daten zu Populationsdynamiken parametrisiert, die über 18 Jahre im Mediterranen Buschland von Eneabba Westaustraliens gesammelt wurden. Anhand von 156 Arten sind sieben für meine Studie relevante Pflanzeneigenschaften identifiziert wurden: Regenerationsart, jährlich maximale Samenproduktion, Samengröße, maximaler Durchmesser, Trockentoleranz, Ausbreitungsart und Samenbanktyp. Kombinationen der Eigenschaften bilden funktionelle Pflanzentypen (PFTs), deren jährliche Dynamik über Lebenszyklusprozesse im Modell simuliert wird. Der erste Teil meiner Arbeit präsentiert die Studie zur Bedeutung von „trade-offs“ für den Erhalt der hohen Diversität in artenreichen Systemen. Die Simulationsergebnisse mit 288 virtuellen PFTs zeigen, dass das „trade-offs“-Konzept für die Identifizierung nicht-lebensfähiger Kombinationen von Pflanzeneigenschaften hilfreich sein kann. Allerdings kann der Shannon-Diversitäts-Index der modellierten Pflanzengesellschaft trotz der Anwesenheit von „Supertypen“ hoch sein. Ich schlussfolgere, dass „trade-off“ zwischen zwei Eigenschaften weniger wichtig für die Erklärung der Koexistenz von vielen Arten und hoher Diversität sind, als es durch konzeptionelle Modelle vorhergesagt wird. Viele Studien zeigen, dass Sameneintrag aus dem regionalen Samenpool essenziell für den Erhalt lokaler Artendiversität ist. Es gibt allerdings noch keine systematischen Studien zur Zusammensetzung des Samenregens artenreichen Systemen. Die Ergebnisse der Simulationsexperimente im zweiten Teil meiner Arbeit machen deutlich, dass ohne Sameneintrag die lokale Pflanzengesellschaft Eneabbas sich in eine Richtung entwickelt, in der nur wenige PFTs koexistieren. Mit steigender Samenimmigrationsrate erreicht die Anzahl an koexistierenden PFTs und die Shannon-Diversität schnell die Werte, die auch im Feld gefunden werden. Der regionale Sameneintrag kann also als Erklärung zur Struktur lokaler Pflanzengesellschaften dienen. Seine Zusammensetzung sollte jedoch in zukünftigen Studien berücksichtigt werden. Im dritten Teil meiner Doktorarbeit präsentiere ich Analysen zur Sensibilität der PFTs von Eneabba vorhergesagte Klimaszenarien und der Auswirkungen auf die Samenimmigration. Die Ergebnisse zeigen deutlich, dass Klimaänderungen das Potential haben, die Anzahl an ausgebreiteten Samen der meisten Eneabba PFTs zu verändern. Die Entscheidungsbaum-Analyse veranschaulicht, dass die Reaktion auf Klimaänderung PFT-spezifisch ist. In den Eneabba hängt die Sensitivität der PFTs gegenüber klimatischen Veränderungen von den PFT-spezifischen Eigenschaftskombinationen und vom Klimaszenarium ab, d.h. von der Entwicklung der Regenfallmenge und der Feuerfrequenz. Dieses Ergebnis betont, dass PFT-spezifische Reaktionen und die klimabedingten Änderungen in der Samenimmigration in Studien zum Einfluss von Klimaänderungen auf die zukünftige Artenverteilung berücksichtigt werden sollten. Die Ergebnisse aus den drei Kapiteln werden in der allgemeinen Diskussion zusammengeführt und analysiert. Das Modell wird diskutiert und Verbesserungen und Vorschläge für weitere Forschung aufgezeigt. Meine Arbeit führt zu folgenden Schlussfolgerungen: i) Es ist notwendig, empirische Arbeit und Modellierung zu kombinieren, um Koexistenz in artenreichen Systemen zu erklären. ii) Durch den gewählten Modellansatz kann die Komplexität von Koexistenz erfasst und das Verständnis vertieft werden. iii) Auf Felddaten basierende Annahmen bezüglich Umweltbedingungen und Lebenzyklus können zur Relativierung der Bedeutsamkeit von Mechanismen führen. So können Trade-offs eine geringere Rolle spielen, als konzeptionelle Modelle nahe legen. iv) Samenimmigration ist ein Schlüsselprozess für lokale Koexistenz. Deren Änderung aufgrund von Klimawandel sollte für Prognosen zu Artenvorkommen berücksichtigt werden. Feldstudien sollten durchgeführt werden, um die Datenlücken zur Samenregenzusammensetzung zu füllen. KW - Feuer KW - Artenreichtum KW - individuelle Modellierung KW - fire KW - plant functional types KW - species richness KW - individual based modeling Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-44632 ER - TY - GEN A1 - Troppmann, Britta A1 - Balfanz, Sabine A1 - Baumann, Arnd A1 - Blenau, Wolfgang T1 - Inverse agonist and neutral antagonist actions of synthetic compounds at an insect 5-HT1 receptor N2 - Background and purpose: 5-Hydroxytryptamine (5-HT) has been shown to control and modulate many physiological and behavioural functions in insects. In this study, we report the cloning and pharmacological properties of a 5-HT1 receptor of an insect model for neurobiology, physiology and pharmacology. Experimental approach: A cDNA encoding for the Periplaneta americana 5-HT1 receptor was amplified from brain cDNA. The receptor was stably expressed in HEK 293 cells, and the functional and pharmacological properties were determined in cAMP assays. Receptor distribution was investigated by RT-PCR and by immunocytochemistry using an affinity-purified polyclonal antiserum. Key results: The P. americana 5-HT1 receptor (Pea5-HT1) shares pronounced sequence and functional similarity with mammalian 5-HT1 receptors. Activation with 5-HT reduced adenylyl cyclase activity in a dose-dependent manner. Pea5-HT1 was expressed as a constitutively active receptor with methiothepin acting as a neutral antagonist, and WAY 100635 as an inverse agonist. Receptor mRNA was present in various tissues including brain, salivary glands and midgut. Receptor-specific antibodies showed that the native protein was expressed in a glycosylated form in membrane samples of brain and salivary glands. Conclusions and implications: This study marks the first pharmacological identification of an inverse agonist and a neutral antagonist at an insect 5-HT1 receptor. The results presented here should facilitate further analyses of 5-HT1 receptors in mediating central and peripheral effects of 5-HT in insects. KW - Biogenic amine KW - constitutive activity KW - cellular signalling KW - G-protein-coupled receptor KW - insect Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-44346 ER - TY - JOUR A1 - Tirok, Katrin A1 - Gaedke, Ursula T1 - Internally driven alternation of functional traits in a multispecies predator-prey system N2 - The individual functional traits of different species play a key role for ecosystem function in aquatic and terrestrial systems. We modeled a multispecies predator-prey system with functionally different predator and prey species based on observations of the community dynamics of ciliates and their algal prey in Lake Constance. The model accounted for differences in predator feeding preferences and prey susceptibility to predation, and for the respective trade-offs. A low food demand of the predator was connected to a high food selectivity, and a high growth rate of the prey was connected to a high vulnerability to grazing. The data and the model did not show standard uniform predator- prey cycles, but revealed both complex dynamics and a coexistence of predator and prey at high biomass levels. These dynamics resulted from internally driven alternations in species densities and involved compensatory dynamics between functionally different species. Functional diversity allowed for ongoing adaptation of the predator and prey communities to changing environmental conditions such as food composition and grazing pressure. The trade-offs determined whether compensatory or synchronous dynamics occurred which influence the variability at the community level. Compensatory dynamics were promoted by a joint carrying capacity linking the different prey species which is particularly relevant at high prey biomasses, i.e., when grazers are less efficient. In contrast, synchronization was enhanced by the coupling of the different predator and prey species via common feeding links, e.g., by a high grazing pressure of a nonselective predator. The communities had to be functionally diverse in terms of their trade-offs and their traits to yield compensatory dynamics. Rather similar predator species tended to cycle synchronously, whereas profoundly different species did not coexist. Compensatory dynamics at the community level thus required intermediately strong tradeoffs for functional traits in both predators and their prey. Y1 - 2010 UR - http://esapubs.org/esapubs/journals/ecology.htm U6 - https://doi.org/10.1890/09-1052.1 SN - 0012-9658 ER - TY - THES A1 - Froeschke, Götz T1 - Interactions of climatic and geographical effects on gastrointestinal parasite burden and immune gene variability (MHC) of the striped mouse, "Rhabdomys pumilio" Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Thalhammer, Anja A1 - Hundertmark, Michaela A1 - Popova, Antoaneta V. A1 - Seckler, Robert A1 - Hincha, Dirk K. T1 - Interaction of two intrinsically disordered plant stress proteins (COR15A and COR15B) with lipid membranes in the dry state N2 - COR15A and COR15B form a tandem repeat of highly homologous genes in Arabidopsis thaliana. Both genes are highly cold induced and the encoded proteins belong to the Pfam LEA_4 group (group 3) of the late embryogenesis abundant (LEA) proteins. Both proteins were predicted to be intrinsically disordered in solution. Only COR15A has previously been characterized and it was shown to be localized in the soluble stroma fraction of chloroplasts. Ectopic expression of COR15A in Arabidopsis resulted in increased freezing tolerance of both chloroplasts after freezing and thawing of intact leaves and of isolated protoplasts frozen and thawed in vitro. In the present study we have generated recombinant mature COR15A and COR15B for a comparative study of their structure and possible function as membrane protectants. CD spectroscopy showed that both proteins are predominantly unstructured in solution and mainly a-helical after drying. Both proteins showed similar effects on the thermotropic phase behavior of dry liposomes. A decrease in the gel to liquid-crystalline phase transition temperature depended on both the unsaturation of the fatty acyl chains and lipid headgroup structure. FTIR spectroscopy indicated no strong interactions between the proteins and the lipid phosphate and carbonyl groups, but significant interactions with the galactose headgroup of the chloroplast lipid monogalactosyldiacylglycerol. These findings were rationalized by modeling the secondary structure of COR15A and COR15B. Helical wheel projection indicated the presence of amphipathic a-helices in both proteins. The helices lacked a clear separation of positive and negative charges on the hydrophilic face, but contained several hydroxylated amino acids. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00052736 U6 - https://doi.org/10.1016/j.bbamem.2010.05.015 SN - 0005-2736 ER - TY - JOUR A1 - Thamm, Markus A1 - Schmidt, Stephanie L. A1 - Bernhard, Detlef T1 - Insights into the phylogeny of the genus stentor (heterotrichea, ciliophora) with special emphasis on the evolution of the macronucleus based on SSU rDNA data N2 - Representatives of the genus Stentor (Stentoridae, Heterotrichea) are striking ciliates in environmental water samples because of their size (up to 4 mm) and their trumpet-like shape. Important for species identification are the following main characteristics: (1) the presence or absence of endosymbiotic algae (zoochlorellae); (2) the colour of the pigmented cortical granules, and (3) the shape of the macronucleus. The complete small subunit rDNA (SSU rDNA) of 19 further representatives of the genus Stentor was sequenced to examine the phylogenetic relationships within this genus and to determine the taxonomic value of these main characteristics. The detailed phylogenetic analyses yielded a separation of all species possessing a single compact macronucleus from those species with an "elongated" macronucleus (moniliform or vermiform). The data also indicate that the uptake of algae as well as the loss of pigmentation happened independently in different lineages. Furthermore, a high level of intraspecific variation within several species was found. Thus, S. muelleri and S. (sp.) cf. katashimai appear to represent distinct species and S. multiformis is composed of a species complex. Y1 - 2010 UR - http://www1.nencki.gov.pl/ap-archive.htm SN - 0065-1583 ER - TY - THES A1 - Götze, Jan Philipp T1 - Influence of protein and solvent environments on quantum chemical properties of photosynthesis enzymes and photoreceptors T1 - Einfluss von Protein- und Lösungsmittelumgebungen auf quantenchemische Eigenschaften von Photosynthese-Enzymen und -Photorezeptoren N2 - This thesis contains quantum chemical models and force field calculations for the RuBisCO isotope effect, the spectral characteristics of the blue-light sensor BLUF and the light harvesting complex II. The work focuses on the influence of the environment on the corresponding systems. For RuBisCO, it was found that the isotopic effect is almost unaffected by the environment. In case of the BLUF domain, an amino acid was found to be important for the UV/vis spectrum, but unaccounted for in experiments so far (Ser41). The residue was shown to be highly mobile and with a systematic influence on the spectral shift of the BLUF domain chromophore (flavin). Finally, for LHCII it was found that small changes in the geometry of a Chlorophyll b/Violaxanthin chromophore pair can have strong influences regarding the light harvesting mechanism. Especially here it was seen that the proper description of the environment can be critical. In conclusion, the environment was observed to be of often unexpected importance for the molecular properties, and it seems not possible to give a reliable estimate on the changes created by the presence of the environment. N2 - Diese Arbeit beinhaltet quantenchemische und molekularmechanische Modelle zum Isotopeneffekt des Enzyms RuBisCO, der spektralen Charakterisierung des Blaulicht-Rezeptors BLUF und dem Lichtsammelkomplex II (LHCII). Es wurden vor allem die Einflüsse der Umgebung auf die entsprechenden Systeme untersucht. Für RuBisCO wurde gefunden, dass der Isotopeneffekt nur marginal von der Umgebung abhängt. Im Falle der BLUF Domäne wurde eine Aminosäure charakterisiert (Ser41), die bis dato experimentell noch nicht beschrieben war. Es wurde festgestellt, dass Ser41 hochmobil ist und einen systematischen Einfluss auf die spektrale Verschiebung des BLUF Chromophors (Flavin) hat. Schließlich wurde bei LHCII festgestellt, dass kleine Veränderungen in der Geometrie eines Chlorophyll b/Violaxanthin Chromophorenpaares bereits massive Einflüsse auf den Mechanismus des Lichtsammelprozesses haben können. Insbesondere hier zeigt sich, wie kritisch die genaue Beschreibung der Umgebung ist. Zusammenfassend wurde beobachtet, dass sich die Umgebung in oft unerwarteter Weise auf die molekularen Eigenschaften auswirken kann und es daher nicht möglich zu sein scheint, die entsprechenden Effekte vorher abzuschätzen. KW - Photosynthese KW - Molekülmodelle KW - RuBisCO KW - LHCII KW - Blaulichtsensoren KW - Photosynthesis KW - molecular modeling KW - RuBisCO KW - LHCII KW - Blue-light sensors Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-51135 ER - TY - JOUR A1 - Yuryev, Ruslan A1 - Kasche, Volker A1 - Ignatova, Zoya A1 - Galunsky, Boris T1 - Improved A. faecalis penicillin amidase mutant retains the thermodynamic and pH stability of the wild type enzyme N2 - Penicillin amidase from Alacaligenes faecalis is an attractive biocatalyst for hydrolysis of penicillin G for production of 6-aminopenicillanic acid, which is used in the synthesis of semi-synthetic beta-lactam antibiotics. Recently a mutant of this enzyme with extended C-terminus of the A-chain comprising parts of the connecting linker peptide was constructed. Its turnover number for the hydrolysis of penicillin G was 140 s(-1), about twice of the value for the wild-type enzyme (80 s(-1)). At the same time the specificity constant was improved about three-fold. The wild- type and the mutant enzymes showed similar pH stability suggesting that the linker peptide fragment covalently attached to the A-chain does not alter the electrostatic interactions in the protein core. Although the global stability of A. faecalis wild-type enzyme and the T206GS213G variant does not differ, the presence of the linker fragment stabilizes the domains interface, as evidenced by the monophasic transition of the mutant enzyme from folded to unfolded state during urea-induced denaturation. The high stability and activity of the mutant enzyme provides a rationale to use it as a biocatalyst in the industrial processes, where the enzyme must be more robust to fluctuations in the operational conditions. Y1 - 2010 UR - http://springerlink.metapress.com/content/1573-4943/ U6 - https://doi.org/10.1007/s10930-010-9238-4 SN - 1572-3887 ER - TY - JOUR A1 - Fischer, Markus A1 - Bossdorf, Oliver A1 - Gockel, Sonja A1 - Haensel, Falk A1 - Hemp, Andreas A1 - Hessenmoeller, Dominik A1 - Korte, Gunnar A1 - Nieschulze, Jens A1 - Pfeiffer, Simone A1 - Prati, Daniel A1 - Renner, Swen A1 - Schoening, Ingo A1 - Schumacher, Uta A1 - Wells, Konstans A1 - Buscot, Francois A1 - Kalko, Elisabeth K. V. A1 - Linsenmair, Karl Eduard A1 - Schulze, Ernst-Detlef A1 - Weisser, Wolfgang W. T1 - Implementing large-scale and long-term functional biodiversity research : the biodiversity exploratories N2 - Functional biodiversity research explores drivers and functional consequences of biodiversity changes Land use change is a major driver of changes of biodiversity and of biogeochemical and biological ecosystem processes and services However, land use effects on genetic and species diversity are well documented only for a few taxa and trophic networks We hardly know how different components of biodiversity and their responses to land use change are interrelated and very little about the simultaneous, and interacting, effects of land use on multiple ecosystem processes and services Moreover, we do not know to what extent land use effects on ecosystem processes and services are mediated by biodiversity change Thus, overall goals are on the one hand to understand the effects of land use on biodiversity and on the other to understand the modifying role of biodiversity change for land-use effects on ecosystem processes, including biogeochemical cycles To comprehensively address these Important questions, we recently established a new large-scale and long-term project for functional biodiversity, the Biodiversity Exploratories (www biodiversity-exploratories de) They comprise a hierarchical set of standardized field plots in three different regions of Germany covering manifold management types and intensities in grasslands and forests They serve as a joint research platform for currently 40 projects involving over 300 people studying various aspects of the relationships between land use biodiversity and ecosystem processes through monitoring, comparative observation and experiments We introduce guiding questions, concept and design of the Biodiversity Exploratories - including main aspects of selection and implementation of field plots and project structure - and we discuss the significance of this approach for further functional biodiversity research This includes the crucial relevance of a common study design encompassing variation in both drivers and outcomes of biodiversity change and ecosystem processes, the interdisciplinary integration of biodiversity and ecosystem researchers, the training of a new generation of integrative biodiversity researchers, and the stimulation of functional biodiversity research in real landscape contexts, in Germany and elsewhere. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/14391791 U6 - https://doi.org/10.1016/j.baae.2010.07.009 SN - 1439-1791 ER - TY - JOUR A1 - Stein, Claudia A1 - Unsicker, Sybille B. A1 - Kahmen, Ansgar A1 - Wagner, Markus A1 - Audorff, Volker A1 - Auge, Harald A1 - Prati, Daniel A1 - Weisser, Wolfgang W. T1 - Impact of invertebrate herbivory in grasslands depends on plant species diversity N2 - Invertebrate herbivores are ubiquitous in most terrestrial ecosystems, and theory predicts that their impact on plant community biomass should depend on diversity and productivity of the associated plant communities. To elucidate general patterns in the relationship between invertebrate herbivory, plant diversity, and productivity, we carried out a long-term herbivore exclusion experiment at multiple grassland sites in a mountainous landscape of central Germany. Over a period of five years, we used above-and belowground insecticides as well as a molluscicide to manipulate invertebrate herbivory at 14 grassland sites, covering a wide range of plant species diversity (13-38 species/m(2)) and aboveground plant productivity (272-1125 g.m(-2).yr(-1)), where plant species richness and productivity of the sites were not significantly correlated. Herbivore exclusion had significant effects on the plant communities: it decreased plant species richness and evenness, and it altered plant community composition. In particular, exclusion of belowground herbivores promoted grasses at the expense of herbs. In contrast to our expectation, herbivore effects on plant community biomass were not influenced by productivity. However, effect size of invertebrate herbivores was negatively correlated with plant diversity of the grasslands: the effect of herbivory on biomass tended to be negative at sites of high diversity and positive at sites of low diversity. In general, the effects of aboveground herbivores were relatively small as compared to belowground herbivores, which were important drivers of plant community composition. Our study is the first to show that variation in the effects of invertebrate herbivory on plant communities across a landscape is significantly influenced by plant species richness. Y1 - 2010 UR - http://esapubs.org/esapubs/journals/ecology.htm U6 - https://doi.org/10.1890/09-0600.1 SN - 0012-9658 ER - TY - THES A1 - Albus, Christin Anne T1 - Identifizierung und Charakterisierung neuer Proteine mit Funktionen in der Biogenese des Photosyntheseapparates Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Arvidsson, Samuel Janne T1 - Identification of growth-related tonoplast proteins in Arabidopsis thaliana T1 - Identifizierung von wachstumsrelevanten Tonoplast-Proteinen in Arabidopsis thaliana (Ackerschmalwand) N2 - In a very simplified view, the plant leaf growth can be reduced to two processes, cell division and cell expansion, accompanied by expansion of their surrounding cell walls. The vacuole, as being the largest compartment of the plant cell, plays a major role in controlling the water balance of the plant. This is achieved by regulating the osmotic pressure, through import and export of solutes over the vacuolar membrane (the tonoplast) and by controlling the water channels, the aquaporins. Together with the control of cell wall relaxation, vacuolar osmotic pressure regulation is thought to play an important role in cell expansion, directly by providing cell volume and indirectly by providing ion and pH homestasis for the cytosoplasm. In this thesis the role of tonoplast protein coding genes in cell expansion in the model plant Arabidopsis thaliana is studied and genes which play a putative role in growth are identified. Since there is, to date, no clearly identified protein localization signal for the tonoplast, there is no possibility to perform genome-wide prediction of proteins localized to this compartment. Thus, a series of recent proteomic studies of the tonoplast were used to compile a list of cross-membrane tonoplast protein coding genes (117 genes), and other growth-related genes from notably the growth regulating factor (GRF) and expansin families were included (26 genes). For these genes a platform for high-throughput reverse transcription quantitative real time polymerase chain reaction (RT-qPCR) was developed by selecting specific primer pairs. To this end, a software tool (called QuantPrime, see http://www.quantprime.de) was developed that automatically designs such primers and tests their specificity in silico against whole transcriptomes and genomes, to avoid cross-hybridizations causing unspecific amplification. The RT-qPCR platform was used in an expression study in order to identify candidate growth related genes. Here, a growth-associative spatio-temporal leaf sampling strategy was used, targeting growing regions at high expansion developmental stages and comparing them to samples taken from non-expanding regions or stages of low expansion. Candidate growth related genes were identified after applying a template-based scoring analysis on the expression data, ranking the genes according to their association with leaf expansion. To analyze the functional involvement of these genes in leaf growth on a macroscopic scale, knockout mutants of the candidate growth related genes were screened for growth phenotypes. To this end, a system for non-invasive automated leaf growth phenotyping was established, based on a commercially available image capture and analysis system. A software package was developed for detailed developmental stage annotation of the images captured with the system, and an analysis pipeline was constructed for automated data pre-processing and statistical testing, including modeling and graph generation, for various growth-related phenotypes. Using this system, 24 knockout mutant lines were analyzed, and significant growth phenotypes were found for five different genes. N2 - Sehr vereinfacht gesagt kann Blattwachstum auf zwei Prozesse reduziert werden, Zellteilung und Zellexpansion, gefolgt von Zellwandexpansion. Die Vakuole, das größte Organell der Zelle, übt durch die Kontrolle des Wasserhaushaltes der Pflanze eine wichtige Funktion im Zusammenhang mit der Zellexpansion aus. Dies geschieht durch die Regulierung des osmotischen Druckes, durch Import und Export von organischen und anorganischen Ionen über die Vakuolenmembran (den Tonoplast) und durch die Kontrolle ihrer Wasserkanäle (der Aquaporine). Es wird angenommen, dass die Regulierung des vakuolären osmotischen Druckes eine große Rolle bei der Zellexpansion spielt, da der osmotische Druck die Stärke der mechanischen Kraft des Tonoplast auf die Plasmamembran und die Zellwand bestimmt. In dieser Dissertation wird die Rolle von Tonoplastproteinen und ihrer Gene auf die Zellexpansion anhand der Modellpflanze Arabidopsis thaliana (Ackerschmalwand) untersucht, und Kandidaten für wachstumsrelevante Gene werden identifiziert. Da bisher noch kein Signal für die Lokalisierung von Proteinen im Tonoplast identifiziert wurde, gibt es keine Möglichkeit, genomweite Voraussagen über solche Proteinlokalisierungen zu machen. Daher haben wir eine Reihe von aktuellen Proteom-Studien genutzt, um eine Liste von 117 Genen, die für transmembrane tonoplastproteinkodierende Gene kodieren, zusammenzustellen. Zusätzlich wurden andere wachstumsrelevante Gene und Zellzyklus-Gene in die Liste aufgenommen (38 Gene). Die Expression der Gene während der Blattentwicklung sollte mittels einer sensitiven Technik, der quantitativen Polymerasekettenreaktion (qPCR), untersucht werden. Um rasch die für dieses Verfahren notwendigen Oligonukleotide zu entwerfen, wurde ein Computerprogramm („QuantPrime“) entwickelt. Das Programm entwirft automatisch solche Oligonukleotide und überprüft deren Spezifizität in silico auf Ebene der Transkriptome und Genome um Kreuz-Hybridisierungen zu vermeiden, die zu unspezifischen Amplifikationen führen würden. Die qPCR-Plattform wurde in einer Expressions-Studie eingesetzt, um wachstumsrelevante Gen-Kandidaten zu identifizieren. Um wachstumsaktive und nichtaktive Prozesse vergleichen zu können, wurden Proben von unterschiedlichen Bereichen des Blattes zu unterschiedlichen Wachstumsstadien beprobt. Eine musterbasierte Expressionsdatenanalyse wurde eingesetzt, um die Gene hinischtlich ihrer Assoziation mit der Blattexpansionen in eine Rangordnung zu bringen. Die Gene mit dem höchsten Rang wurden als Kandidaten für weitere Experimente ausgewählt. Um die funktionelle Beteiligung dieser Gene auf einer makroskopischen Ebene zu untersuchen, wurden Knockout-Mutanten für die Gen-Kandidaten hinsichtlich ihres Wachstums analysiert. Zu diesem Zweck wurde ein System für die automatisierte Phänotypisierung des Blattwachstums etabliert. Zum einen wurde ein Programm-Paket für detaillierte Annotation von Wachstumsstadien und zum anderen ein Analyse-Paket für automatisierte Datenvorbereitung und statistische Tests entwickelt. Das Analyse-Paket erlaubt die Modellierung und graphische Darstellung verschiedener wachstumsrelevanter Phänotypen. Mit Hilfe dieses Systems wurden 24 Knockout-Mutanten untersucht und signifikante Phänotypen wurden für fünf verschiedene Gene gefunden. KW - Ackerschmalwand KW - Wachstum KW - Tonoplast KW - qPCR KW - Phänotypisierung KW - Arabidopsis KW - Growth KW - Tonoplast KW - qPCR KW - Phenotyping Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-52408 ER - TY - JOUR A1 - Rosa, Sabrina F. A1 - Powell, Anahid E. A1 - Rosengarten, Rafael D. A1 - Nicotra, Matthew L. A1 - Moreno, Maria A. A1 - Grimwood, Jane A1 - Lakkis, Fadi G. A1 - Dellaporta, Stephen L. A1 - Buss, Leo W. T1 - Hydractinia allodeterminant alr1 resides in an immunoglobulin superfamily-like gene complex Y1 - 2010 SN - 0960-9822 ER - TY - JOUR A1 - Averbeck, Christiane A1 - Apio, Ann A1 - Plath, Martin A1 - Wronski, Torsten T1 - Hunting differentially affects mixed-sex and bachelor-herds in a gregarious ungulate, the impala (Aepyceros melampus: Bovidae) N2 - We investigated herd-sizes and herd-compositions of Impala (Aepyceros melampus) inside a protected area [Lake Mburo National Park (LMNP) in western Uganda] and the unprotected adjacent ranchland [the Ankole Ranching Scheme (ARS)]. Impala experience intense hunting and poaching in the study area, and poaching is especially strong on the ARS. We found evidence for changes in overall group-sizes in both mixed-sex and pure bachelor herds between areas in and outside LMNP. Mixed-sex herds strongly decreased in size outside the National Park, but bachelor herds even slightly increased in size. While the group-composition of mixed-sex herds was very similar in areas in and outside LMNP, bachelor herds comprised more yearlings and subadult males on the ARS. Our study suggests that effects of hunting and other human nuisance may differ between herd types: mixed herds probably decrease in size because females are more strongly hunted. Around LMNP, impala are usually hunted using nets and spears, thereby increasing the hunters' chance of being injured. Poachers therefore prefer hornless females (and their calves), as it is less dangerous to handle net-caught females than males. As a result, males are less hunted, but increased vigilance and, therefore, reduced aggression among the members of a bachelor herd, may account for the observed increase in herd sizes and changes in group-compositions. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0141-6707 U6 - https://doi.org/10.1111/j.1365-2028.2009.01118.x SN - 0141-6707 ER - TY - JOUR A1 - Trauth, Martin H. A1 - Maslin, Mark A. A1 - Deino, Alan L. A1 - Junginger, Annett A1 - Lesoloyia, Moses A1 - Odada, Eric O. A1 - Olago, Daniel O. A1 - Olaka, Lydia A. A1 - Strecker, Manfred A1 - Tiedemann, Ralph T1 - Human evolution in a variable environment : the amplifier lakes of Eastern Africa N2 - The development of rise Cenozoic East African Rift System (EARS) profoundly re-shaped the landscape and significantly increased the amplitude of short-term environmental response to climate variation. In particular, the development of amplifier lakes in rift basins after three million years ago significantly contributed to this exceptional sensitivity of East Africa to climate change compared to elsewhere on the African continent. Amplifier lakes are characterized by tectonically-formed graben morphologies in combination with an extreme contrast between high precipitation in the elevated parts of the catchment and high evaporation in the lake area. Such amplifier lakes respond rapidly to moderate, precessional-forced climate shifts, and as they do so apply dramatic environmental pressure to the biosphere. Rift basins, when either extremely dry or lake-filled, form important barriers for migration, mixing and competition of different populations of animals and hominins. Amplifier lakes link long-term, high-amplitude tectonic processes and short-term environmental fluctuations. East Africa may have become the place where early humans evolved as a consequence of this strong link between different time scales. (C) 2010 Elsevier Ltd. All rights reserved. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/02773791 U6 - https://doi.org/10.1016/j.quascirev.2010.07.007 SN - 0277-3791 ER - TY - JOUR A1 - Epp, Laura Saskia A1 - Stoof, Kathleen R. A1 - Trauth, Martin H. A1 - Tiedemann, Ralph T1 - Historical genetics on a sediment core from a Kenyan lake : intraspecific genotype turnover in a tropical rotifer is related to past environmental changes N2 - Using molecular genetic methods and an ancient DNA approach, we studied population and species succession of rotifers of the genus Brachionus in the Kenyan alkaline-saline crater lake Sonachi since the beginning of the 19th century as well as distribution of Brachionus haplotypes in recent and historic sediments of other lakes of the East African Rift System. The sediment core record of Lake Sonachi displays haplotypes of a distinct evolutionary lineage in all increments. Populations were dominated by a single mitochondrial haplotype for a period of 150 years, and two putatively intraspecific turnovers in dominance occurred. Both changes are concordant with major environmental perturbations documented by a profound visible change in sediment composition of the core. The first change was very abrupt and occurred after the deposition of volcanic ash at the beginning of the 19th century. The second change coincides with a major lake level lowstand during the 1940s. It was preceded by a period of successively declining lake level, in which two other haplotypes appeared in the lake. One of these putatively belongs to another species documented in historical and recent Kenyan lake sediments. The analysis of plankton population dynamics through historical time can reveal patterns of population persistence and turnover in relation to environmental changes. Y1 - 2010 UR - http://www.springerlink.com/content/100294 U6 - https://doi.org/10.1007/s10933-009-9379-7 SN - 0921-2728 ER - TY - JOUR A1 - Spijkerman, Elly T1 - High Photosynthetic Rates under a Colimitation for Inorganic Phosphorus and Carbon Dioxide1 N2 - Inorganic phosphorus (P-i) and carbon (here, CO2) potentially limit the photosynthesis of phytoplankton simultaneously (colimitation). A single P-i limitation generally reduces photosynthesis, but the effect of a colimitation is not known. Therefore, photosynthesis was measured under P-i-limited conditions and high and low CO2, and osmo-mixotrophic (i.e., growth in the presence of glucose) conditions that result in colimiting conditions in some cases. The green alga Chlamydomonas acidophila Negoro was used as a model organism because low P-i and CO2 concentrations likely influence its photosynthetic rates in its natural environment. Results showed a decreasing maximum photosynthetic rate (P-max) and maximum quantum yield (Theta(II)) with increasing P-i limitation. In addition, a P-i limitation enhanced the relative contribution of dark respiration to P-max (R-d:P-max) but did not influence the compensation light intensity. P-max positively correlated with the cellular RUBISCO content. Osmo-mixotrophic conditions resulted in similar P-max, Theta(II), and RUBISCO content as in high-CO2 cultures. The low-CO2 cultures were colimited by P-i and CO2 and had the highest P-max, Theta(II), and RUBISCO content. Colimiting conditions for P-i and CO2 in C. acidophila resulted in an enhanced mismatch between photosynthesis and growth rates compared to the effect of a single P- i limitation. Primary productivity of colimited phytoplankton could thus be misinterpreted. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0022-3646 U6 - https://doi.org/10.1111/j.1529-8817.2010.00859.x SN - 0022-3646 ER - TY - JOUR A1 - Hermanussen, Michael A1 - Godina, Elena A1 - Ruehli, Frank J. A1 - Blaha, Pawel A1 - Boldsen, Jesper L. A1 - van Buuren, Stef A1 - MacIntyre, Matthew A1 - Aßmann, Christian A1 - Ghosh, Arunava A1 - de Stefano, Gian Fra nco A1 - Sonkin, Valentin D. A1 - Tresguerres Hernández, Jesús Ángel Fernández A1 - Meigen, Christof A1 - Scheffler, Christiane A1 - Geiger, Cherie L. A1 - Lieberman, Leslie Sue T1 - Growth variation, final height and secular trend : proceedings of the 17th Aschauer Soiree, 7th November 2009 N2 - Growth and body height have always been topics interesting to the public. In particular, the stupendous increase of some 15-19 cm in final adult height during the last 150 years in most European countries (the "secular trend"), the concomitant changes in body and head proportions, the tendency towards early onset of sexual maturation, the changes in the age when final height is being reached, and the very recent trend in body mass index, have generated much scientific literature. The marked plasticity of growth in height and weight over time causes problems. Child growth references differ between nations, they tend to quickly become out of date, and raise a number of questions regarding fitting methods, effects caused by selective drop-out, etc. New findings contradict common beliefs about the primary importance of nutritional and health related factors for secular changes in growth. There appears to be a broad age span from mid-childhood to early adolescence that is characterised by a peculiar insusceptibility. Environmental factors that are known to influence growth during this age span appear to have only little or no impact on final height. Major re- arrangements in height occur at an age when puberty has almost been completed and final height has almost been reached, implying that factors, which drive the secular trend in height, are limited to early childhood and late adolescence. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/0018442X U6 - https://doi.org/10.1016/j.jchb.2010.06.001 SN - 0018-442X ER - TY - JOUR A1 - Fettke, Jörg A1 - Albrecht, Tanja A1 - Hejazi, Mahdi A1 - Mahlow, Sebastian A1 - Nakamura, Yasunori A1 - Steup, Martin T1 - Glucose 1-phosphate is efficiently taken up by potato (Solanum tuberosum) tuber parenchyma cells and converted to reserve starch granules N2 - Reserve starch is an important plant product but the actual biosynthetic process is not yet fully understood. Potato (Solanum tuberosum) tuber discs from various transgenic plants were used to analyse the conversion of external sugars or sugar derivatives to starch. By using in vitro assays, a direct glucosyl transfer from glucose 1-phosphate to native starch granules as mediated by recombinant plastidial phosphorylase was analysed. Compared with labelled glucose, glucose 6-phosphate or sucrose, tuber discs converted externally supplied [C-14] glucose 1-phosphate into starch at a much higher rate. Likewise, tuber discs from transgenic lines with a strongly reduced expression of cytosolic phosphoglucomutase, phosphorylase or transglucosidase converted glucose 1-phosphate to starch with the same or even an increased rate compared with the wild-type. Similar results were obtained with transgenic potato lines possessing a strongly reduced activity of both the cytosolic and the plastidial phosphoglucomutase. Starch labelling was, however, significantly diminished in transgenic lines, with a reduced concentration of the plastidial phosphorylase isozymes. Two distinct paths of reserve starch biosynthesis are proposed that explain, at a biochemical level, the phenotype of several transgenic plant lines. Y1 - 2010 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0028-646X U6 - https://doi.org/10.1111/j.1469-8137.2009.03126.x SN - 0028-646X ER - TY - JOUR A1 - Zhang, Gong A1 - Fedyunin, Ivan A1 - Miekley, Oskar A1 - Valleriani, Angelo A1 - Moura, Alessandro A1 - Ignatova, Zoya T1 - Global and local depletion of ternary complex limits translational elongation N2 - The translation of genetic information according to the sequence of the mRNA template occurs with high accuracy and fidelity. Critical events in each single step of translation are selection of transfer RNA (tRNA), codon reading and tRNA-regeneration for a new cycle. We developed a model that accurately describes the dynamics of single elongation steps, thus providing a systematic insight into the sensitivity of the mRNA translation rate to dynamic environmental conditions. Alterations in the concentration of the aminoacylated tRNA can transiently stall the ribosomes during translation which results, as suggested by the model, in two outcomes: either stress-induced change in the tRNA availability triggers the premature termination of the translation and ribosomal dissociation, or extensive demand for one tRNA species results in a competition between frameshift to an aberrant open-reading frame and ribosomal drop-off. Using the bacterial Escherichia coli system, we experimentally draw parallels between these two possible mechanisms. Y1 - 2010 UR - http://nar.oxfordjournals.org/ U6 - https://doi.org/10.1093/Nar/Gkq196 SN - 0305-1048 ER - TY - THES A1 - Knorr, Roland L. T1 - Giant vesicles - influence of phase state, composition and electric pulses Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Geissler, Katja A1 - Gzik, Axel T1 - Germination ecology of three endangered river corridor plants in relation to their preferred occurrence N2 - As a contribution to conservation, we investigated germination requirements of three perennial, endangered river corridor plants of Central European lowlands coexisting in subcontinental flood meadows, but preferring particular zones of decreasing flooding frequency and duration along the elevational gradient of the banks. It was hypothesized that the species have specific germination requirements to respond successfully to open patch creation depending on their occurrence along the gradient of spring flooding in the field. This study involved controlled experiments and phenological studies. Juncus atratus and Gratiola officinalis, which frequently occupy flooded, naturally disturbed sites, have an absolute light requirement for germination, typical of pioneer species. Summer-dispersed, non-dormant seeds off. atratus did hardly germinate at high temperatures and lacked a gap sensitivity based on temperature fluctuation. Since the temperature amplitude decreases beneath an insulating cover of vegetation or water, seeds seem to be prepared for rapid germination at open, wet, maybe even inundated sites. Late-summer-dispersed seeds of G. officinalis were in a state of conditional primary dormancy. Dormancy could be completely broken by cold-wet stratification, indicating spring germination. Similar to J. atratus, daily temperature fluctuations did not control germination at suitable microsites. In Cnidium dubium that occurs at higher elevated sites, the level of primary dormancy of seeds was sufficient to prevent germination following dispersal, but the level was dependent on the year of harvest. Buried seeds showed an annual dormancy/conditional dormancy cycle. Dormancy was only partially broken by cold- wet stratification. It was completely broken by application of a high concentration of gibberellic acid. C. dubium had no absolute light requirement for germination, but it was stimulated by high light levels and in contrast to the other two species, seeds were stimulated by daily temperature fluctuations. Germination would therefore be maximized by zaps in early spring when the flooding water has receded. Re-entering dormancy in the late spring fails to support that germination occurs immediately after early-summer mowing - an important factor at subcontinental flood meadows. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/03672530 U6 - https://doi.org/10.1016/j.flora.2010.04.008 SN - 0367-2530 ER - TY - THES A1 - Christian, Nils T1 - Genome-scale metabolic networks: Quality improvement and habitat interaction analysis Y1 - 2010 CY - Potsdam ER - TY - THES A1 - Petersen, Kerstin T1 - Genexpression in Plastiden: Funktionen plastidärer Introns und Produktion Zellwand-abbauender Enzyme Y1 - 2010 CY - Potsdam ER -