TY - JOUR A1 - Czapka, Sophia A1 - Schwieter, John W. A1 - Festman, Julia T1 - The influence of peripheral emotions on inhibitory control among children JF - Acta psychologica : international journal of psychonomics N2 - In this study, we investigated the cognitive-emotional interplay by measuring the effects of executive competition (Pessoa, 2013), i.e., how inhibitory control is influenced when emotional information is encountered. Sixty-three children (8 to 9 years of age) participated in an inhibition task (central task) accompanied by happy, sad, or neutral emoticons (displayed in the periphery). Typical interference effects were found in the main task for speed and accuracy, but in general, these effects were not additionally modulated by the peripheral emoticons indicating that processing of the main task exhausted the limited capacity such that interference from the task-irrelevant, peripheral information did not show (Pessoa, 2013). Further analyses revealed that the magnitude of interference effects depended on the order of congruency conditions: when incongruent conditions preceded congruent ones, there was greater interference. This effect was smaller in sad conditions, and particularly so at the beginning of the experiment. These findings suggest that the bottom-up perception of task-irrelevant emotional information influenced the top-down process of inhibitory control among children in the sad condition when processing demands were particularly high. We discuss if the salience and valence of the emotional stimuli as well as task demands are the decisive characteristics that modulate the strength of this relation. KW - Executive function KW - Inhibitory control task KW - Cognitive emotional KW - regulation KW - Primary school children Y1 - 2022 U6 - https://doi.org/10.1016/j.actpsy.2022.103507 SN - 0001-6918 SN - 1873-6297 VL - 223 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Duit, Andreas A1 - Lim, Sijeong A1 - Sommerer, Thomas T1 - The state and the environment BT - environmental policy and performance in 37 countries 1970–2010 JF - Politics & policy N2 - The limitations and possibilities of the state in solving societal problems are perennial issues in the political and policy sciences and increasingly so in studies of environmental politics. With the aim of better understanding the role of the state in addressing environmental degradation through policy making, this article investigates the nexus between the environmental policy outputs and the environmental performance. Drawing on three theoretical perspectives on the state and market nexus in the environmental dilemma, we identify five distinct pathways. We then examine the extent to which these pathways are manifested in the real world. Our empirical investigation covers up to 37 countries for the period 1970–2010. While we see no global pattern of linkages between policy outputs and performance, our exploratory analysis finds evidence of policy effects, which suggest that the state can, under certain circumstances, improve the environment through policy making. KW - comparative environmental politics KW - ecological modernization KW - environmental degradation KW - environmental policy effects KW - environmental policy performance KW - national ecological footprint KW - policy output KW - regulation KW - state KW - treadmill of production KW - política ambiental comparada KW - modernización ecológica KW - huella ecológica KW - regulación estatal Y1 - 2023 U6 - https://doi.org/10.1111/polp.12561 SN - 1555-5623 SN - 1747-1346 VL - 51 IS - 6 SP - 1046 EP - 1068 PB - Wiley-Blackwell CY - Hoboken, NJ ER - TY - JOUR A1 - Ebers, Martin A1 - Hoch, Veronica R. S. A1 - Rosenkranz, Frank A1 - Ruschemeier, Hannah A1 - Steinrötter, Björn T1 - The European Commission’s proposal for an Artificial Intelligence Act BT - a critical assessment by members of the Robotics and AI Law Society (RAILS) JF - J : multidisciplinary scientific journal N2 - On 21 April 2021, the European Commission presented its long-awaited proposal for a Regulation “laying down harmonized rules on Artificial Intelligence”, the so-called “Artificial Intelligence Act” (AIA). This article takes a critical look at the proposed regulation. After an introduction (1), the paper analyzes the unclear preemptive effect of the AIA and EU competences (2), the scope of application (3), the prohibited uses of Artificial Intelligence (AI) (4), the provisions on high-risk AI systems (5), the obligations of providers and users (6), the requirements for AI systems with limited risks (7), the enforcement system (8), the relationship of the AIA with the existing legal framework (9), and the regulatory gaps (10). The last section draws some final conclusions (11). KW - artificial intelligence KW - machine learning KW - European Union KW - regulation KW - harmonization KW - Artificial Intelligence Act Y1 - 2021 U6 - https://doi.org/10.3390/j4040043 SN - 2571-8800 VL - 4 IS - 4 SP - 589 EP - 603 PB - MDPI CY - Basel ER - TY - JOUR A1 - Tiberius, Victor A1 - Hauptmeijer, Raoul T1 - Equity crowdfunding BT - Forecasting market development, platform evolution, and regulation JF - Journal of small business management : advancing small business management and entrepreneurship research worldwide / published on behalf of the International Council for Small Business N2 - In this study, we explore the development of equity crowdfunding (ECF) over the next 5 to 10 years by conducting an international Delphi study. Our results indicate that the ECF market is expected to grow significantly. However, it is unlikely to disrupt other forms of financing and will not cover all SME financing needs. ECF will remain a funding technique for SMEs and small investors; it is unlikely to attract large corporations or institutional investors. Platforms will impose stricter requirements for capital raisers, expand their services, and innovate their business models. National governments will probably partly liberalize the ECF market. KW - Equity crowdfunding KW - entrepreneurial finance KW - regulation KW - small KW - business KW - startup funding Y1 - 2021 U6 - https://doi.org/10.1080/00472778.2020.1849714 SN - 0047-2778 SN - 1540-627X VL - 59 IS - 2 SP - 337 EP - 369 PB - Taylor & Francis Group CY - London ER - TY - JOUR A1 - Niere, Oliver A1 - Spannemann, Lisa A1 - Stenzel, Patrick A1 - Bogin, Barry A1 - Hermanussen, Michael A1 - Scheffler, Christiane T1 - Plasticity of human growth BT - a systematic review on psychosocial factors influencing growth JF - Journal of biological and clinical anthropology : Anthropologischer Anzeiger ; Mitteilungsorgan der Gesellschaft für Anthropologie N2 - Background: This systematic review aimed at collecting, analyzing and summarizing scientific studies focusing on psychosocial factors that influence linear growth among humans. Methods: The online database "PubMed" was used in order to acquire suitable scientific studies. These studies were evaluated based on clearly defined criteria that determine whether a study was to be excluded or included in the literature review. In the end, a total sum of 36 studies remained, which were carefully analyzed and used to generate an overview of the association between psychosocial factors and linear growth. Results: In the 36 reviewed studies, different social and psychological factors, such as socioeconomic status, parental education or emotional deprivation were set in relation to physical growth among humans. The studies were listed and summarized, depending on the investigated psychosocial factor. A clear association between psychosocial factors and growth could be observed in most of the reviewed studies. Discussion: Based on the results of the reviewed studies it could be concluded that the regulation of linear growth is also subject to different psychosocial factors. The way in which the developing human and the specific social environment interact seemed to have a major impact on linear growth. Statusspecific stress was discussed as one possible explanation for the regulating mechanism of human linear growth. KW - linear growth KW - final body height KW - regulation KW - psychosocial factors KW - social factors KW - psychological factors Y1 - 2020 U6 - https://doi.org/10.1127/anthranz/2020/1223 SN - 0003-5548 SN - 2363-7099 VL - 77 IS - 5 SP - 431 EP - 443 PB - Schweizerbart CY - Stuttgart ER - TY - JOUR A1 - Schwahn, Kevin A1 - Nikoloski, Zoran T1 - Data reduction approaches for dissecting transcriptional effects on metabolism JF - Frontiers in plant science N2 - The availability of high-throughput data from transcriptomics and metabolomics technologies provides the opportunity to characterize the transcriptional effects on metabolism. Here we propose and evaluate two computational approaches rooted in data reduction techniques to identify and categorize transcriptional effects on metabolism by combining data on gene expression and metabolite levels. The approaches determine the partial correlation between two metabolite data profiles upon control of given principal components extracted from transcriptomics data profiles. Therefore, they allow us to investigate both data types with all features simultaneously without doing preselection of genes. The proposed approaches allow us to categorize the relation between pairs of metabolites as being under transcriptional or post-transcriptional regulation. The resulting classification is compared to existing literature and accumulated evidence about regulatory mechanism of reactions and pathways in the cases of Escherichia coil, Saccharomycies cerevisiae, and Arabidopsis thaliana. KW - E. coil KW - S. cerevisiae KW - A. thaliana KW - partial correlation KW - principal component analysis KW - metabolomics KW - data reduction KW - regulation Y1 - 2018 U6 - https://doi.org/10.3389/fpls.2018.00538 SN - 1664-462X VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - GEN A1 - Jekauc, Darko A1 - Brand, Ralf T1 - Editorial: How do Emotions and Feelings Regulate Physical Activity? T2 - Frontiers in psychology KW - physical activity KW - exercise KW - emotions KW - feelings KW - affect KW - regulation KW - implicit KW - enjoyment Y1 - 2017 U6 - https://doi.org/10.3389/fpsyg.2017.01145 SN - 1664-1078 VL - 8 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Hernandez, Martin A. A1 - Gleixner, Gerd A1 - Sachse, Dirk A1 - Alvarez, Hector M. T1 - Carbon Allocation in Rhodococcus jostii RHA1 in Response to Disruption and Overexpression of nlpR Regulatory Gene, Based on C-13-labeling Analysis JF - Frontiers in microbiology N2 - Nitrogen lipid regulator (NlpR) is a pleiotropic regulator that positively controls genes associated with both nitrogen and lipid metabolism in the oleaginous bacterium Rhodococcus jostii RHA1. In this study, we investigated the effect of nlpR disruption and overexpression on the assimilation of C-13-labeled glucose as carbon source, during cultivation of cells under nitrogen-limiting and nitrogen-rich conditions, respectively. Label incorporation into the total lipid extract (TLE) fraction was about 30% lower in the mutant strain in comparison with the wild type strain under low-nitrogen conditions. Moreover, a higher C-13 abundance (similar to 60%) into the extracellular polymeric substance fraction was observed in the mutant strain, nlpR disruption also promoted a decrease in the label incorporation into several TLE-derivative fractions including neutral lipids (NL), glycolipids (GL), phospholipids (PL), triacylglycerols (TAG), diacylglycerols (DAG), and free fatty acids (FFA), with the DAG being the most affected. In contrast, the nlpR overexpression in RHA1 cells under nitrogen-rich conditions produced an increase of the label incorporation into the TLE and its derivative NL and PL fractions, the last one being the highest C-13 enriched. In addition, a higher C-13 enrichment occurred in the TAG, DAG, and FFA fractions after nlpR induction, with the FFA fraction being the most affected within the TLE. Isotopic-labeling experiments demonstrated that NlpR regulator is contributing in oleaginous phenotype of R. jostii RHA1 to the allocation of carbon into the different lipid fractions in response to nitrogen levels, increasing the rate of carbon flux into lipid metabolism. KW - Rhodococcus KW - RHA1 KW - NlpR KW - regulation KW - C-13-glucose KW - lipid metabolism Y1 - 2017 U6 - https://doi.org/10.3389/fmicb.2017.01992 SN - 1664-302X VL - 8 PB - Frontiers Research Foundation CY - Lausanne ER - TY - GEN A1 - Nikoloski, Zoran A1 - van Dongen, Joost T. T1 - Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions T2 - New phytologist : international journal of plant science KW - hypoxia KW - modeling KW - regulation KW - respiration KW - roots Y1 - 2011 U6 - https://doi.org/10.1111/j.1469-8137.2011.03674.x SN - 0028-646X VL - 190 IS - 2 SP - 273 EP - 276 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Christian, Jan-Ole A1 - Braginets, Rostyslav A1 - Schulze, Waltraud X. A1 - Walther, Dirk T1 - Characterization and prediction of protein phosphorylation hotspots in Arabidopsis thaliana JF - Frontiers in plant science N2 - The regulation of protein function by modulating the surface charge status via sequence-locally enriched phosphorylation sites (P-sites) in so called phosphorylation "hotspots" has gained increased attention in recent years. We set out to identify P-hotspots in the model plant Arabidopsis thaliana. We analyzed the spacing of experimentally detected P-sites within peptide-covered regions along Arabidopsis protein sequences as available from the PhosPhAt database. Confirming earlier reports (Schweiger and Lanial, 2010), we found that, indeed, P-sites tend to cluster and that distributions between serine and threonine P-sites to their respected closest next P-site differ significantly from those for tyrosine P-sites. The ability to predict P-hotspots by applying available computational P-site prediction programs that focus on identifying single P-sites was observed to be severely compromised by the inevitable interference of nearby P-sites. We devised a new approach, named HotSPotter, for the prediction of phosphorylation hotspots. HotSPotter is based primarily on local amino acid compositional preferences rather than sequence position-specific motifs and uses support vector machines as the underlying classification engine. HotSPotter correctly identified experimentally determined phosphorylation hotspots in A. thaliana with high accuracy. Applied to the Arabidopsis proteome, HotSPotter-predicted 13,677 candidate P-hotspots in 9,599 proteins corresponding to 7,847 unique genes. Hotspot containing proteins are involved predominantly in signaling processes confirming the surmised modulating role of hotspots in signaling and interaction events. Our study provides new bioinformatics means to identify phosphorylation hotspots and lays the basis for further investigating novel candidate P-hotspots. All phosphorylation hotspot annotations and predictions have been made available as part of the PhosPhAt database at http://phosphat.mpimp-golm.mpg.de. KW - protein phosphorylation KW - hotspots KW - Arabidopsis thaliana KW - support vector machines KW - regulation Y1 - 2012 U6 - https://doi.org/10.3389/fpls.2012.00207 SN - 1664-462X VL - 3 PB - Frontiers Research Foundation CY - Lausanne ER - TY - THES A1 - Schroth, Maximilian T1 - Microfinance and the enhancement of economic development in less developed countries T1 - Mikrofinanzierung und die Förderung wirtschaftlicher Entwicklung in weniger entwickelten Ländern N2 - It is the intention of this study to contribute to further rethinking and innovating in the Microcredit business which stands at a turning point – after around 40 years of practice it is endangered to fail as a tool for economic development and to become a doubtful finance product with a random scope instead. So far, a positive impact of Microfinance on the improvement of the lives of the poor could not be confirmed. Over-indebtment of borrowers due to the pre-dominance of consumption Microcredits has become a widespread problem. Furthermore, a rising number of abusive and commercially excessive practices have been reported. In fact, the Microfinance sector appears to suffer from a major underlying deficit: there does not exist a coherent and transparent understanding of its meaning and objectives so that Microfinance providers worldwide follow their own approaches of Microfinance which tend to differ considerably from each other. In this sense the study aims at consolidating the multi-faced and very often confusingly different Microcredit profiles that exist nowadays. Subsequently, in this study, the Microfinance spectrum will be narrowed to one clear-cut objective, in fact away from the mere monetary business transactions to poor people it has gradually been reduced to back towards a tool for economic development as originally envisaged by its pioneers. Hence, the fundamental research question of this study is whether, and under which conditions, Microfinance may attain a positive economic impact leading to an improvement of the living of the poor. The study is structured in five parts: the three main parts (II.-IV.) are surrounded by an introduction (I.) and conclusion (V.). In part II., the Microfinance sector is analysed critically aiming to identify the challenges persisting as well as their root causes. In the third part, a change to the macroeconomic perspective is undertaken in oder to learn about the potential and requirements of small-scale finance to enhance economic development, particularly within the economic context of less developed countries. By consolidating the insights gained in part IV., the elements of a new concept of Microfinance with the objecitve to achieve economic development of its borrowers are elaborated. Microfinance is a rather sensitive business the great fundamental idea of which is easily corruptible and, additionally, the recipients of which are predestined victims of abuse due to their limited knowledge in finance. It therefore needs to be practiced responsibly, but also according to clear cut definitions of its meaning and objectives all institutions active in the sector should be devoted to comply with. This is especially relevant as the demand for Microfinance services is expected to rise further within the years coming. For example, the recent refugee migration movement towards Europe entails a vast potential for Microfinance to enable these people to make a new start into economic life. This goes to show that Microfinance may no longer mainly be associated with a less developed economic context, but that it will gain importance as a financial instrument in the developed economies, too. N2 - Diese Studie soll einen Beitrag zur Grundlagenforschung in der Mikrofinanzierung leisten und zu Reflektion und Innovation im Mikrofinanzsektor anregen. Letzterer befindet sich zurzeit an einem Scheidepunkt: nach knapp 40 Jahren besteht die Gefahr, dass Mikrofinanzierung zu einem zweifelhaften Finanzprodukt ohne klare Richtung verkommt – anstatt sich als ein Mittel zur Förderung wirtschaftlicher Entwicklung zu etablieren. Bislang konnte noch kein Nachweis erbracht werden, dass Mikrofinanzierung einen positiven Einfluss auf die wirtschaftliche Entwicklung der Armen ausübt. Überschuldung der Kreditnehmer ist zu einem weit verbreiteten Problem geworden, die weite Mehrheit der Mikrokredite geht in den Konsum. Außerdem wird vielerorts über eine wachsende Anzahl missbräuchlicher Verleihpraktiken berichtet. Ein Hauptproblem scheint tatsächlich darin zu liegen, dass die Anbieter von Mikrofinanzdienstleistungen allesamt mit eigenen Mikrofinanzkonzepten arbeiten, die sich teilweise sehr stark voneinander unterscheiden. Ein kohärentes und transparentes Verständnis der Bedeutung und Zielsetzungen von Mikrofinanzierung liegt demnach nicht vor. Das Ziel dieser Studie ist daher, die vielschichtigen und oftmals verwirrenden Mikrokreditprofile zu konsolidieren. Das Spektrum von Mikrofinanzierung in dieser Studie soll auf ein klares Ziel eingegrenzt werden: weg von den wenig greifbaren Geldgeschäften für arme Haushalte hin zu einem Mittel zur Förderung der wirtschaftlichen Entwicklung wie ursprünglich von den Erschaffern der Mikrofinanzierung anvisiert. Die zentrale Forschungsfrage dieser Studie lautet daher, ob, und wenn ja, unter welchen Bedingungen, Mikrofinanzierung einen positiven Einfluss auf die wirtschaftliche Entwicklung und die Verbesserung des Lebens der Armen in weniger entwickelten Ländern ausüben kann. Die Studie gliedert sich in fünf Teile: Die drei Hauptteile (II.-IV.) sind eingerahmt von einer Einführung (I.) sowie einem Fazit (V.). In Teil II. wird der Mikrofinanzsektor kritisch analysiert. Es werden die aktuell bestehenden Probleme aufgezeigt und ihre möglichen Ursachen identifiziert. Im dritten Teil werden mithife einer makroökonomischen Betrachtungsweise Erkenntnisse über das Potenzial von Mikrofinanzierung zur Förderung wirtschaftlicher Entwicklung gesammelt. Ebenso über die dazu zu erfüllenden Anforderungen, insbesondere im Kontext weniger entwickelter Länder. In Teil IV. werden die Erkenntnisse konsolidiert und die Elemente eines neuen Mikrofinanzkonzept erarbeitet, das die Förderung der wirtschaftlichen Entwicklung der Kreditnehmer zum Ziel hat. Mikrofinanzierung ist ein sensibles Geschäft, dessen Grundidee leicht korrumpierbar ist und dessen Empfänger prädestinierte Opfer von Betrug und Missbrauch sind, da sie in der Regel über keinerlei Vorerfahrung in Finanzthemen verfügen. Es bedarf daher einer verantwortungsbewussten Praxis, die gleichermaßen nach klaren und transparenten Richtlinien bezüglich Bedeutung und Zielsetzungen ausgerichtet ist, nach denen sich alle aktiven Marktteilnehmer richten. Dies ist insbesondere auch deshalb relevant, da mit einer wachsenden Nachfrage nach Mikrokrediten in den nächsten Jahren zu rechnen ist. Beispielsweise stellt die aktuelle Flüchtlingsbewegung nach Europa ein riesiges Potenzial dar: Mikrokredite könnten den Grundstein für einen Neustart in das Berufsleben dieser Haushalte legen. Dies zeigt auch, dass Mikrofinanzierung nicht mehr ausschließlich mit dem Kontext weniger entwickelter Länder in Verbindung gebracht wird, sondern dass sie auch in den entwickelten Ländern an Bedeutung gewinnen wird. KW - microfinance KW - microcredits KW - money KW - capital market KW - impact KW - indirect help KW - economic development KW - crisis KW - over-indebtment KW - consumption KW - abuse KW - regulation KW - McKinnon KW - less developed countries KW - fragmentation KW - financial repression KW - complementary effect KW - investment KW - savings KW - banking accounts KW - domestic entrepreneurs KW - seed-financing KW - disposable capital KW - ordo-liberal policies KW - mobile banking KW - private wealth KW - foundations KW - impact investing KW - Mikrofinanzierung KW - Mikrokredite KW - Geld KW - Kapitalmarkt KW - Impact KW - indirekte Hilfe KW - wirtschaftliche Entwicklung KW - Krise KW - Überschuldung KW - Konsum KW - Missbrauch KW - Regulierung KW - McKinnon KW - weniger entwickelte Länder KW - Fragmentierung KW - finanzielle Unterdrückung KW - Komplementaritätseffekt KW - Investitionen KW - Sparen KW - Bankkonto KW - lokale Unternehmer KW - Gründungsfinanzierung KW - Kapitaldisposition KW - ordo-liberale Politik KW - mobile banking KW - Privatvermögen KW - Stiftungen KW - Impact Investing Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-94735 ER - TY - GEN A1 - Voss, Martin A1 - Blenau, Wolfgang A1 - Walz, Bernd A1 - Baumann, Otto T1 - V-ATPase deactivation in blowfly salivary glands is mediated by protein phosphatase 2C N2 - The activity of vacuolar H+-ATPase (V-ATPase) in the apical membrane of blowfly (Calliphora vicina) salivary glands is regulated by the neurohormone serotonin (5-HT). 5-HT induces, via protein kinase A, the phosphorylation of V-ATPase subunit C and the assembly of V-ATPase holoenzymes. The protein phosphatase responsible for the dephosphorylation of subunit C and V-ATPase inactivation is not as yet known. We show here that inhibitors of protein phosphatases PP1 and PP2A (tautomycin, ocadaic acid) and PP2B (cyclosporin A, FK-506) do not prevent V-ATPase deactivation and dephosphorylation of subunit C. A decrease in the intracellular Mg2+ level caused by loading secretory cells with EDTA-AM leads to the activation of proton pumping in the absence of 5-HT, prolongs the 5-HT-induced response in proton pumping, and inhibits the dephosphorylation of subunit C. Thus, the deactivation of V-ATPase is most probably mediated by a protein phosphatase that is insensitive to okadaic acid and that requires Mg2+, namely, a member of the PP2C protein family. By molecular biological techniques, we demonstrate the expression of at least two PP2C protein family members in blowfly salivary glands. © 2009 Wiley Periodicals, Inc. KW - vacuolar H+-ATPase KW - assembly KW - regulation KW - protein phosphatise KW - dephosphorylation Y1 - 2009 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-44360 ER - TY - THES A1 - Riaño-Pachón, Diego Mauricio T1 - Identification of transcription factor genes in plants T1 - Identifizierung von Transkriptionsfaktorgenen in Pflanzen N2 - In order to function properly, organisms have a complex control mechanism, in which a given gene is expressed at a particular time and place. One way to achieve this control is to regulate the initiation of transcription. This step requires the assembly of several components, i.e., a basal/general machinery common to all expressed genes, and a specific/regulatory machinery, which differs among genes and is the responsible for proper gene expression in response to environmental or developmental signals. This specific machinery is composed of transcription factors (TFs), which can be grouped into evolutionarily related gene families that possess characteristic protein domains. In this work we have exploited the presence of protein domains to create rules that serve for the identification and classification of TFs. We have modelled such rules as a bipartite graph, where families and protein domains are represented as nodes. Connections between nodes represent that a protein domain should (required rule) or should not (forbidden rule) be present in a protein to be assigned into a TF family. Following this approach we have identified putative complete sets of TFs in plant species, whose genome is completely sequenced: Cyanidioschyzon merolae (red algae), Chlamydomonas reinhardtii (green alga), Ostreococcus tauri (green alga), Physcomitrella patens (moss), Arabidopsis thaliana (thale cress), Populus trichocarpa (black cottonwood) and Oryza sativa (rice). The identification of the complete sets of TFs in the above-mentioned species, as well as additional information and reference literature are available at http://plntfdb.bio.uni-potsdam.de/. The availability of such sets allowed us performing detailed evolutionary studies at different levels, from a single family to all TF families in different organisms in a comparative genomics context. Notably, we uncovered preferential expansions in different lineages, paving the way to discover the specific biological roles of these proteins under different conditions. For the basic leucine zipper (bZIP) family of TFs we were able to infer that in the most recent common ancestor (MRCA) of all green plants there were at least four bZIP genes functionally involved in oxidative stress and unfolded protein responses that are bZIP-mediated processes in all eukaryotes, but also in light-dependent regulations. The four founder genes amplified and diverged significantly, generating traits that benefited the colonization of new environments. Currently, following the approach described above, up to 57 TF and 11 TR families can be identified, which are among the most numerous transcription regulatory families in plants. Three families of putative TFs predate the split between rhodophyta (red algae) and chlorophyta (green algae), i.e., G2-like, PLATZ, and RWPRK, and may have been of particular importance for the evolution of eukaryotic photosynthetic organisms. Nine additional families, i.e., ABI3/VP1, AP2-EREBP, ARR-B, C2C2-CO-like, C2C2-Dof, PBF-2-like/Whirly, Pseudo ARR-B, SBP, and WRKY, predate the split between green algae and streptophytes. The identification of putative complete list of TFs has also allowed the delineation of lineage-specific regulatory families. The families SBP, bHLH, SNF2, MADS, WRKY, HMG, AP2-EREBP and FHA significantly differ in size between algae and land plants. The SBP family of TFs is significantly larger in C. reinhardtii, compared to land plants, and appears to have been lost in the prasinophyte O. tauri. The families bHLH, SNF2, MADS, WRKY, HMG, AP2-EREBP and FHA preferentially expanded with the colonisation of land, and might have played an important role in this great moment in evolution. Later, after the split of bryophytes and tracheophytes, the families MADS, AP2-EREBP, NAC, AUX/IAA, PHD and HRT have significantly larger numbers in the lineage leading to seed plants. We identified 23 families that are restricted to land plants and that might have played an important role in the colonization of this new habitat. Based on the list of TFs in different species we have started to develop high-throughput experimental platforms (in rice and C. reinhardtii) to monitor gene expression changes of TF genes under different genetic, developmental or environmental conditions. In this work we present the monitoring of Arabidopsis thaliana TFs during the onset of senescence, a process that leads to cell and tissue disintegration in order to redistribute nutrients (e.g. nitrogen) from leaves to reproductive organs. We show that the expression of 185 TF genes changes when leaves develop from half to fully expanded leaves and finally enter partial senescence. 76% of these TFs are down-regulated during senescence, the remaining are up-regulated. The identification of TFs in plants in a comparative genomics setup has proven fruitful for the understanding of evolutionary processes and contributes to the elucidation of complex developmental programs. N2 - Organismen weisen einen komplexen Steuerungsmechanismus auf, bei dem die Aktivität eines Gens räumlich und zeitlich reguliert wird. Eine Möglichkeit der Kontrolle der Genaktivität ist Regulation der Initiation der Transkription. Eine Voraussetzung für die Transkriptionsinitiation ist die Zusammenlagerung verschiedener Komponenten: eine allgemeine Maschinerie, die für alle exprimierten Gene gleich ist und eine spezifische Maschinerie, die sich von Gen zu Gen unterscheidet und die für die korrekte Genexpression in Abhängigkeit der Entwicklung und von Umweltsignalen verantwortlich ist. Diese spezifische Maschinerie besteht aus Transkriptionsfaktoren (TFs), welche in evolutionär verwandte Genefamilien eingeteilt werden können, die charakteristische Proteindomänen aufweisen. In dieser Arbeit habe ich die Proteindomänen genutzt, um Regeln aufzustellen, die die Identifizierung und Klassifizierung von TFs erlauben. Solche Regeln wurden als Graphen modelliert, in denen die Familien und Proteindomänen als Knoten repräsentiert wurden. Verbindungen zwischen den Knoten bedeuten, dass eine Proteindomäne in einem Protein entweder vorhanden sein sollte oder nicht vorhanden sein darf, damit das Protein einer TF-Familie zugeordnet wird. Mit Hilfe dieses Ansatzes wurden vermutlich vollständige Datensätze von TFs in Pflanzenspezies generiert, deren Genom komplett sequenziert wurde: C. merolae, C. reinhardtii, O. tauri, P. patens, A. thaliana, P. trichocarpa and O. sativa. Diese kompletten TF-Sätze sowie weitergehende Informationen und Literaturhinweise wurden unter der Internetadresse http://plntfdb.bio.uni-potsdam.de/ öffentlich zugänglich gemacht. Die Datensätze erlaubten es, detailliertere evolutionäre Studien mit unterschiedlichen Schwerpunkten durchzuführen. Diese reichten von der Analyse einzelner Familien bis hin zum genomweiten Vergleich aller TF-Familien in verschiedenen Organismen. Als Resultat besonders erwähnenswert ist, dass bevorzugt einige bestimmte TF-Familien in verschiedenen Spezies expandierten. Diese Studien ebnen den Weg, um die spezifische biologische Rolle dieser Proteine unter verschiedenen Bedingungen zu ergründen. Für die wichtige TF-Familie bZIP konnte gezeigt werden, dass der letzte gemeinsame Vorfahr aller Grünpflanzen mindestens vier bZIP Gene hatte, die funktionell in die Antwort auf oxidativen Stress eingebunden waren. Aus den vier Gründergene entstand durch Genverdopplung und –differenzierung eine große Familie, die Eigenschaften hervorbrachte, die die Besiedelung neuer Lebensräume ermöglichten. Mit Hilfe des oben beschriebenen Ansatzes können derzeit aus der Vielzahl der Transkriptionsregulatorfamilien in Pflanzen bis zu 57 TF und 11 TR Familien identifiziert werden. Drei Familien mutmaßlicher TFs markieren die Trennung zwischen Rhodophyta (Rotalgen) und Chlorophyta (Grünalgen): G2-like, PLATZ und RWPRK. Diese könnten eine besondere Rolle bei der Evolution eukaryotischer photosynthetisch aktiver Organismen gespielt haben. Neun zusätzliche Familien (ABI3/VP1, AP2-EREBP, ARR-B, C2C2-CO-like, C2C2-Dof, PBF-2-like/Whirly, Pseudo ARR-B, SBP und WRKY) kennzeichnen die Trennung zwischen Grünalgen und Streptophyten. Die Identifizierung putativer kompletter Listen an TFs erlaubte auch die Identifizierung abtammungsspezifischer regulatorischer Familien. Die Familien SBP, bHLH, SNF2, MADS, WRKY, HMG, AP2-EREBP und FHA unterscheiden sich signifikant in ihrer Größe zwischen Algen und Landpflanzen. Die SBP Familie ist in C. reinhardtii signifikant größer als in Landpflanzen. In der Parasinophyte O. tauri scheint diese Familie verloren gegangen zu sein. Die Familien bHLH, SNF2, MADS, WRKY, HMG, AP2-EREBP und FHA expandierten präferenziell mit der Kolonialisation an Land. Sie könnten eine wichte Rolle während dieses einschneidenden Ereignisses der Evolution gespielt haben. Später, nach der Trennung von Bryophyten und Tracheophyten sind die Familien MADS, AP2-EREBP, NAC, AUX/IAA, PHD und HRT stärker in den Linien, die zu Samenpflanzen führten, gewachsen. 23 TF-Familien wurden identifiziert, die es nur in Landpflanzen gibt. Sie könnten eine besondere Rolle bei der Besiedelung des neuen Lebensraum gespielt haben. Aufbauend auf die Transkriptionsfaktordatensätze, die in dieser Arbeit erstellt wurden, wurde mittlerweile damit begonnen, experimentelle Hochdurchsatz-Plattformen zu entwickeln (für Reis und für C. reinhardtii), um Änderungen in der Genaktivität der TF-Gene unter verschiedenen genetischen, Entwicklungs- oder Umweltbedingungen zu untersuchen. In dieser Arbeit wird die Analyse von TFs aus A. thaliana im Verlauf der Seneszenz vorgestellt. Seneszenz ist ein Prozess, der zur Zell- und Gewebeauflösung führt, um Nährstoffe aus den Blättern für den Transport in reproduktive Organe freizusetzen. Es wird gezeigt, dass sich die Expression von 187 TF Gene verändert, wenn sich die Blätter voll entfalten und schließlich teilweise in den Prozess der Seneszenz eintreten. 76% der TFs waren runterreguliert, die übrigen waren hochreguliert. KW - Transkriptionfaktorgenen KW - Regulation KW - Evolution KW - Datenbank KW - Pflanzen KW - transcription factor genes KW - regulation KW - evolution KW - plants KW - database Y1 - 2008 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-27009 ER - TY - THES A1 - Gómez-Porras, Judith Lucia T1 - In silico identification of genes regulated by abscisic acid in Arabidopsis thaliana (L.) Heynh. T1 - In silico Identifikation von Abszisinsaeure-regulierten Genen in Arabidopsis thaliana (L.) Heynh. N2 - Abscisic acid (ABA) is a major plant hormone that plays an important role during plant growth and development. During vegetative growth ABA mediates (in part) responses to various environmental stresses such as cold, drought and high salinity. The response triggered by ABA includes changes in the transcript level of genes involved in stress tolerance. The aim of this project was the In silico identification of genes putatively regulated by ABA in A. thaliana. In silico predictions were combined with experimental data in order to evaluate the reliability of computational predictions. Taking advantage of the genome sequence of A. thaliana publicly available since 2000, 1 kb upstream sequences were screened for combinations of cis-elements known to be involved in the regulation of ABA-responsive genes. It was found that around 10 to 20 percent of the genes of A. thaliana might be regulated by ABA. Further analyses of the predictions revealed that certain combinations of cis-elements that confer ABA-responsiveness were significantly over-represented compared with results in random sequences and with random expectations. In addition, it was observed that other combinations that confer ABA-responsiveness in monocotyledonous species might not be functional in A. thaliana. It is proposed that ABA-responsive genes in A. thaliana show pairs of ABRE (abscisic acid responsive element) with MYB binding sites, DRE (dehydration responsive element) or with itself. The analysis of the distances between pairs of cis-elements suggested that pairs of ABREs are bound by homodimers of ABRE binding proteins. In contrast, pairs between MYB binding sites and ABRE, or DRE and ABRE showed a distance between cis-elements that suggested that the binding proteins interact through protein complexes and not directly. The comparison of computational predictions with experimental data confirmed that the regulatory mechanisms leading to the induction or repression of genes by ABA is very incompletely understood. It became evident that besides the cis-elements proposed in this study to be present in ABA-responsive genes, other known and unknown cis-elements might play an important role in the transcriptional regulation of ABA-responsive genes. For example, auxin-related cis elements, or the cis-elements recognized by the NAM-family of transcription factors (Non-Apical meristem). This work documents the use of computational and experimental approaches to analyse possible interactions between cis-elements involved in the regulation of ABA-responsive genes. The computational predictions allowed the distinction between putatively relevant combinations of cis-elements from irrelevant combinations of cis-elements in ABA-responsive genes. The comparison with experimental data allowed to identify certain cis-elements that have not been previously associated to the ABA-mediated transcriptional regulation, but that might be present in ABA-responsive genes (e.g. auxin responsive elements). Moreover, the efforts to unravel the gene regulatory network associated with the ABA-signalling pathway revealed that NAM-transcription factors and their corresponding binding sequences are important components of this network. N2 - Pflanzen reagieren auf aeußere Stresseinwirkung (z.B. Trockenheit oder Hitze) u.a. mit der Bildung bestimmter Hormone. Diese Hormone wiederum bewirken eine Vielzahl komplexer Reaktionen (z.B. im Stoffwechsel und in der Genexpression), die zum Ziel haben, die Pflanzen widerstandsfaehiger gegen die Stresssituation zu machen. Ein wichtiges Stresshormon ist die Abzisinsaeure (ABA, fuer engl. „abscisic acid“). Experimentell koennen Pflanzen durch die Gabe von ABA zu Reaktionen gezwungen werden, die normalerweise nur unter Stressbedingungen beobachtet werden. Hierzu zaehlen vor allem eine Reduktion der Spaltoeffnungen in den Blaettern, um den Wasserverlust infolge von Transpiration zu minimieren, und eine massive Umprogrammierung der Genexpression. In der vorliegenden Arbeit wurde der Einfluss von ABA auf die Genexpression in der Modellpflanze Arabidopsis thaliana untersucht. Hierzu wurden bioinformatorische und experimentelle Ansaetze verknuepft. Die bioinformatorischen Ansaetze bedienten sich der bekannten Sequenz des Genoms von A. thaliana. Mit Hilfe verschiedener geeigneter Computerprogramme wurden im Genom Gene identifiziert, deren Expression potentiell durch ABA reguliert wird. Die so erhaltenen Vorhersagen der verschiedenen Programme wurden miteinander und mit eigenen als auch mit publizierten experimentellen Daten verglichen, um die Qualitaet der Vorhersagen zu beurteilen. Die wichtigste Schlussfolgerung aus den Ergebnissen dieser Arbeit ist, dass gegenwaertig bioinformatorische Ansaetze allein nicht ausreichen, um biologische Prozesse zufriedenstellend zu analysieren. In der vorliegenden Arbeit ermoeglichte erst eine Kombination aus bioinformatorischen und experimentellen Ansaetzen die Generierung neuer, abgesicherter Hypothesen zur ABA-induzierten Umprogrammierung der Genexpression. KW - Bioinformatik KW - Abszisinsäure KW - Promotoren KW - bioinformatics KW - regulation KW - ABA KW - Arabidopsis Y1 - 2005 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-7401 ER -