TY - JOUR A1 - Blenau, Wolfgang T1 - Cellular actions of biogenic amines Y1 - 2005 ER - TY - JOUR A1 - Mustard, J. A. A1 - Kurshan, P. T. A1 - Hamilton, Ingrid S. A1 - Blenau, Wolfgang A1 - Mercer, Alison R. T1 - Developmental expression of a tyramine receptor gene in the brain of the honey bee, Apis mellifera Y1 - 2005 ER - TY - JOUR A1 - Wichmann, Matthias A1 - Groeneveld, Jürgen A1 - Jeltsch, Florian A1 - Grimm, Volker T1 - Mitigation of climate change impacts on raptors by behavioural adaption : ecological buffering mechanism Y1 - 2005 ER - TY - JOUR A1 - Willi, Yvonne A1 - Fischer, Markus T1 - Genetic rescue effect in interconnected populations of small and large size of the self-incompatible Ranunculus reptans Y1 - 2005 ER - TY - JOUR A1 - Fussmann, Gregor F. A1 - Blasius, Bernd T1 - Community response to enrichment is highly sensitive to model structure N2 - Biologists use mathematical functions to model, understand, and predict nature. For most biological processes, however, the exact analytical form is not known. This is also true for one of the most basic life processes, the uptake of food or resources. We show that the use of a number of nearly indistinguishable functions, which can serve as phenomenological descriptors of resource uptake, may lead to alarmingly different dynamical behaviour in a simple community model. More specifically, we demonstrate that the degree of resource enrichment needed to destabilize the community dynamics depends critically on the mathematical nature of the uptake function. Y1 - 2005 UR - http://www.agnld.uni-potsdam.de/~bernd/papers/BiolLett1.pdf ER - TY - JOUR A1 - Jeltsch, Florian A1 - Groeneveld, Jürgen A1 - Wissel, Christian A1 - Wucherer, W. A1 - Dimeyeva, L. T1 - Seed dispersal by cattle may cause shrub encroachment of Grewia flava on southern Kalahari rangelands Y1 - 2005 SN - 3-86537-386-0 ER - TY - JOUR A1 - Fischer, Markus A1 - Perret, Catherine A1 - Galeuchet, David J. T1 - Performance of Lychnis flos-cuculi from fragmented populations under experimental competition and pathogen infection, Ecology Y1 - 2005 SN - 0012-9658 ER - TY - JOUR A1 - Schmoll, Tim A1 - Dietrich, Volkmar A1 - Winkel, Wolfgang A1 - Epplen, J. T. A1 - Schurr, Frank Martin A1 - Lubjuhn, Thomas T1 - Paternal genetic effects on offspring fitness are context dependent within the extrapair mating system of a socially monogamous passerine N2 - Avian extrapair mating systems provide an interesting model to assess the role of genetic benefits in the evolution of female multiple mating behavior, as potentially confounding nongenetic benefits of extrapair mate choice are seen to be of minor importance. Genetic benefit models of extrapair mating behavior predict that females engage in extrapair copulations with males of higher genetic quality compared to their social mates, thereby improving offspring reproductive value. The most straightforward test of such good genes models of extrapair mating implies pail-wise comparisons of maternal half-siblings raised in the same environment, which permits direct assessment of Paternal genetic effects oil offspring traits. But genetic benefits of mate choice may be difficult to detect. Furthermore, the extent of genetic benefits (in terms of increased offspring viability or fecundity) may depend oil the environmental context Such that the proposed differences between extrapair offspring (EPO) and within-pair offspring (WPO) only appear under comparatively poor environmental conditions. We tested the hypothesis that genetic benefits of female extrapair mate choice are context dependent by analyzing offspring fitness-related traits in the coal tit (Parus ater) in relation to seasonal variation in environmental conditions. Paternal genetic effects on offspring fitness were context dependent. as shown by a significant interaction effect of differential paternal genetic contribution and offspring hatching date. EPO showed a higher local recruitment probability than their maternal half-siblings if born comparatively late in the season (i.e.. when overall performance had significantly declined), while WPO performed better early in the season. The same general pattern of context dependence was evident when using the number of grandchildren born to a cuckolding female via her female WPO or EPO progeny as the respective fitness measure. However, we were unable to demonstrate that cuckolding females obtained a general genetic fitness benefit from extrapair fertilizations in terms of offspring viability or fecundity. Thus, another type of benefit Could be responsible for maintaining female extrapair mating preferences in the study population. Our results suggest that more than a single selective pressure may have shaped the evolution of female extrapair mating behavior in socially monogamous passerines. Y1 - 2005 ER - TY - JOUR A1 - Heilmann, Katja A1 - Groth, Thomas A1 - Behrsing, Olaf A1 - Wagner, Albrecht A1 - Schossig-Tiedemann, Michael A1 - Lendlein, Andreas A1 - Micheel, Burkhard T1 - The influence of the chemical composition of cell culture material on the growth and antibody production of hybridoma cells N2 - The multiplication and antibody production of murine hybridoma cells cultured on five different polymer membranes were tested and compared with conventional tissue culture polystyrene (TCPS). Membranes were prepared from polyacrylonitrile (PAN) and acrylonitrile copolymerized with N-vinylpyrrolidone (NVP20, NVP30), Na-methallylsulfonate (NaMAS) and N-(3-amino-propyl-methacrylamide-hydrochloride) (APMA). Cell number and antibody concentration were quantified as criteria for viability and productivity. Adhesion of hybridoma cells was characterized by vital and scanning electron microscopy. The results suggest that a strong adhesion of cells, observed on APMA and TCPS, increased cell growth but reduced monoclonal antibody production. In contrast membranes with lowered adhesivity such as NVP20 provided favourable conditions for monoclonal antibody production. In addition it was shown that this membrane also possessed a minor fouling as indicated by the low decrease of water flux across the membrane after protein adsorption. It was concluded that NVP20 could be a suitable material for the development of hollow fibre membranes for bioreactors. Y1 - 2005 UR - http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T3C-4DPYNGY- 4&_coverDate=02%2F09%2F2005&_alid=268995355&_rdoc=1&_fmt=&_orig=search&_qd=1&_cdi=4943&_sort=d&view=c&_acct=C000053886&_v e ER - TY - JOUR A1 - Vasseur, David A1 - Gaedke, Ursula A1 - McCann, Kevin S. T1 - A seasonal alternation of coherent and compensatory dynamics occurs in phytoplankton N2 - Functional groups with diverse responses to environmental factors sum to produce communities with less temporal variability in their biomass than those lacking this diversity. The detection of these compensatory dynamics can be complicated by a spatio-temporal alternation in the environmental factors limiting growth (both abiotic and biotic), which restricts the occurrence of compensatory dynamics to certain periods or locations. Hence, resolving the spatio- temporal scale may uncover important spatial and/or temporal components in community variability. Using long-term data from Lake Constance (Bodensee), we find that a reduction in grazing pressure and relaxed competition for nutrients during winter and spring generates coherent dynamics among edible and less edible phytoplankton. During summer and fall, when both grazing pressure and nutrient limitation are present, edible and less edible phytoplankton exhibit compensatory dynamics. This study supports recent work suggesting that both abiotic and biotic interactions promote compensatory dynamics and to our knowledge, this is the first example of a system where compensatory and coherent dynamics seasonally alternate. Y1 - 2005 ER - TY - JOUR A1 - Willi, Yvonne A1 - van Buskirk, J. A1 - Fischer, Markus T1 - A threefold genetic allee effect : Population size affects cross-compatibility, inbreeding depression and drift load in the self-incompatible Ranunculus reptans Y1 - 2005 SN - 0016-6731 ER - TY - JOUR A1 - Scheller, Frieder W. A1 - Lisdat, Fred A1 - Wollenberger, Ursula T1 - Application of electrically contacted enzymes for biosensors Y1 - 2005 SN - 3-527- 30690-0 ER - TY - JOUR A1 - Keller, S. A1 - Sauer, I. A1 - Strauss, H. A1 - Gast, Klaus A1 - Dathe, M. A1 - Bienert, Michael C. T1 - Membrane-mimetic nanocarriers formed by a dipalmitoylated cell-penetrating peptide Y1 - 2005 ER - TY - JOUR A1 - Shpilyov, Alexey V. A1 - Zinchenko, Vladislav V. A1 - Shestakov, Sergey V. A1 - Grimm, Bernhard A1 - Lokstein, Heiko T1 - Inactivation of the geranylgeranyl reductase (ChlP) gene in the cyanobacterium Synechocystis sp. PCC 6803 Y1 - 2005 ER - TY - JOUR A1 - Zhang, Gong A1 - Fedyunin, Ivan A1 - Miekley, Oskar A1 - Valleriani, Angelo A1 - Moura, Alessandro A1 - Ignatova, Zoya T1 - Global and local depletion of ternary complex limits translational elongation N2 - The translation of genetic information according to the sequence of the mRNA template occurs with high accuracy and fidelity. Critical events in each single step of translation are selection of transfer RNA (tRNA), codon reading and tRNA-regeneration for a new cycle. We developed a model that accurately describes the dynamics of single elongation steps, thus providing a systematic insight into the sensitivity of the mRNA translation rate to dynamic environmental conditions. Alterations in the concentration of the aminoacylated tRNA can transiently stall the ribosomes during translation which results, as suggested by the model, in two outcomes: either stress-induced change in the tRNA availability triggers the premature termination of the translation and ribosomal dissociation, or extensive demand for one tRNA species results in a competition between frameshift to an aberrant open-reading frame and ribosomal drop-off. Using the bacterial Escherichia coli system, we experimentally draw parallels between these two possible mechanisms. Y1 - 2010 UR - http://nar.oxfordjournals.org/ U6 - https://doi.org/10.1093/Nar/Gkq196 SN - 0305-1048 ER - TY - JOUR A1 - Kamunke, Norbert A1 - Bohn, Christiane T1 - Utilisation of dissolved organic carbon from different sources by pelagic bacteria in an acidic mining lake Y1 - 2006 ER - TY - JOUR A1 - Krikunova, Maria A1 - Lokstein, Heiko A1 - Leupold, Dieter A1 - Hiller, Roger G. A1 - Voigt, B. T1 - Pigment-pigment interactions in PCP of Amphidinium carterae investigated by nonlinear polarization spectroscopy in the frequency domain N2 - Peridinin-chlorophyll a-protein (PCP) is a unique antenna complex in dinoflagellates that employs peridinin (a carotenoid) as its main light-harvesting pigment. Strong excitonic interactions between peridinins, as well as between peridinins and chlorophylls (Chls) a, can be expected from the short intermolecular distances revealed by the crystal structure. Different experimental approaches of nonlinear polarization spectroscopy in the frequency domain (NLPF) were used to investigate the various interactions between pigments in PCP of Amphidinium carterae at room temperature. Lineshapes of NLPF spectra indicate strong excitonic interactions between the peridinin's optically allowed S-2 (1Bu(+)) states. A comprehensive subband analysis of the distinct NLPF spectral substructure in the peridinin region allows us to assign peridinin subbands to the two Chls a in PCP having different S-1-state lifetimes. Peridinin subbands at 487, 501, and 535 nm were assigned to the longer-lived Chl, whereas a peridinin subband peaking at 515 nm was detected in both clusters. Certain peridinin(s), obviously corresponding to the subband centered at 487 nm, show(s) specific (possibly Coulombic?) interaction between the optically dark S-1(2A(g)(-)) and/or intramolecular charge- transfer (ICT) state and S-1 of Chl a. The NLPF spectrum, hence, indicates that this peridinin state is approximately isoenergetic or slightly above S-1 of Chl a. A global subband analysis of absorption and NLPF spectra reveals that the Chl a Q(y)-band consists of two subbands ( peaking at 669 and 675 nm and having different lifetimes), confirmed by NLPF spectra recorded at high pump intensities. At the highest applied pump intensities an additional band centered at <= 660 nm appears, suggesting-together with the above results-an assignment to a low-dipole moment S-0-> S-1/ICT transition of peridinin Y1 - 2006 ER - TY - JOUR A1 - Raynaud, F A1 - Jond-Necand, C A1 - Marcilhac, Anne A1 - Fürst, Dieter Oswald A1 - Benyamin, Yves T1 - Calpain 1-gamma filamin interaction in muscle cells : a possible in situ regulation by PKC-alpha Y1 - 2006 ER - TY - JOUR A1 - Leupold, Dieter A1 - Lokstein, Heiko A1 - Scheer, Hugo T1 - Excitation energy transfer between (bacterio)chlorophylls : the role of excitonic coupling Y1 - 2006 ER - TY - JOUR A1 - Lokstein, Heiko A1 - Hedke, Boris A1 - Mustroph, Angelika A1 - Kühn, Christina T1 - Signals, sensing, and plant primary metabolism Y1 - 2006 ER - TY - JOUR A1 - Wachten, Sebastian A1 - Schlenstedt, Jana A1 - Gauss, Renate A1 - Baumann, Arnd T1 - Molecular identification and functional characterization of an adenylyl cyclase from the honeybee N2 - Cyclic AMP (cAMP) serves as an important messenger in virtually all organisms. In the honeybee (Apis mellifera), cAMP-dependent signal transduction has been implicated in behavioural processes as well as in learning and memory. Key components of cAMP-signalling cascades are adenylyl cyclases. However, the molecular identities and biochemical properties of adenylyl cyclases are completely unknown in the honeybee. We have cloned a cDNA (Amac3) from honeybee brain that encodes a membrane-bound adenylyl cyclase. The Amac3 gene is an orthologue of the Drosophila ac39E gene. The corresponding proteins share an overall amino acid similarity of approximately 62%. Phylogenetically, AmAC3 belongs to group 1 adenylyl cyclases. Heterologously expressed AmAC3 displays basal enzymatic activity and efficient coupling to endogenous G protein signalling pathways. Stimulation of beta-adrenergic receptors induces AmAC3 activity with an EC50 of about 3.1 mu m. Enzymatic activity is also increased by forskolin (EC50 approximately 15 mu m), a specific agonist of membrane-bound adenylyl cyclases. Similar to certain biogenic amine receptor genes of the honeybee, Amac3 transcripts are expressed in many somata of the brain, especially in mushroom body neurones. These results suggest that the enzyme serves in biogenic amine signal transduction cascades and in higher brain functions that contribute to learning and memory of the bee Y1 - 2006 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1471-4159.2006.03666.x/full U6 - https://doi.org/10.1111/j.1471-4159.2006.03666.x ER - TY - JOUR A1 - Huggenberger, Stefan A1 - Ridgway, Sam H. A1 - Oelschlager, Helmut H.A. A1 - Kirschenbauer, Irmgard A1 - Vogl, Thomas J. A1 - Klima, Milan T1 - Histological analysis of the nasal roof cartilage in a neonate sperm whale (Physeter macrocephalus : Mammalia, Odontoceti) N2 - The nasal roof cartilage of a neonate sperm whale (Physeter macrocephalus) was examined by gross dissection and routine histology. This cartilage is part of the embryonic Tectum nasi and is a critical feature in the formation of the massive sperm whale forehead. In neonates as well as in adults, the blade-like nasal roof cartilage extends diagonally through the huge nasal complex from the bony nares to the blowhole on the left side of the rostral apex of the head. It accompanies the left nasal passage along its entire length, which may reach several meters in adult males. The tissue of the nasal roof cartilage in the neonate whale shows an intermediate state of development. For example, in embryos and fetuses, the nasal roof cartilage consists of hyaline cartilage, but in adult sperm whales, it also includes elastic fibers. In our neonate sperm whale, the nasal roof cartilage already consisted of adult-like elastic cartilage. In addition, the active or growing, layer of the perichondrium was relatively thick compared to that of fetuses, and a large number of straight, elastic fibers that were arranged perpendicularly to the long axis of the nasal roof cartilage were present. These neonatal features call be interpreted as characteristics of immature and growing cartilaginous tissue. An important function of the nasal roof cartilage may be the stabilization of the left nasal passage, which is embedded within the soft tissue of the nasal complex. The nasal roof cartilage with its elastic fibers may keep the nasal passage open and prevent its collapse from Bernoulli forces during inhalation. Additionally, the intrinsic tension of the massive nasal musculature may be a source of compression on the nasal roof cartilage and could explain its hyaline character in the adult. In our neonate specimen, in contrast, the cartilaginous rostrum (i.e., mesorostral cartilage) consisted of hyaline cartilage with an ample blood supply. The cartilaginous rostrum does not change its histological characteristics during development, but its function In adults is still not understood. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/00445231 U6 - https://doi.org/10.1016/j.jcz.2006.01.001 SN - 0044-5231 ER - TY - JOUR A1 - Spahn, Frank A1 - Schmidt, Jürgen A1 - Albers, Nicole A1 - Hörning, Marcel A1 - Makuch, Martin A1 - Seiß, Martin A1 - Kempf, Sascha A1 - Srama, Ralf A1 - Dikarev, Valeri A1 - Helfert, Stefan A1 - Moragas-Klostermeyer, Georg A1 - Krivov, Alexander V. A1 - Sremcevic, Miodrag A1 - Tuzzolino, Anthony J. A1 - Economou, Thanasis A1 - Grün, Eberhard T1 - Cassini dust measurements at Enceladus and implications for the origin of the E ring Y1 - 2006 UR - http://www.sciencemag.org/content/311/5766/1416.full U6 - https://doi.org/10.1126/science.1121375 ER - TY - JOUR A1 - Köchy, Martin T1 - Stochastic time series of daily precipitation for the interior of Israel N2 - This contribution describes a generator of stochastic time series of daily precipitation for the interior of Israel from c. 90 to 900 mm mean annual precipitation (MAP) as a tool for studies of daily rain variability. The probability of rainfall on a given day of the year is described by a regular Gaussian peak curve function. The amount of rain is drawn randomly from an exponential distribution whose mean is the daily mean rain amount (averaged across years for each day of the year) described by a flattened Gaussian peak curve. Parameters for the curves have been calculated from monthly aggregated, long-term rain records from seven meteorological stations. Parameters for arbitrary points on the MAP gradient are calculated from a regression equation with MAP as the only independent variable. The simple structure of the generator allows it to produce time series with daily rain patterns that are projected under climate change scenarios and simultaneously control MAP. Increasing within-year variability of daily precipitation amounts also increases among-year variability of MAP as predicted by global circulation models. Thus, the time series incorporate important characteristics for climate change research and represent a flexible tool for simulations of daily vegetation or surface hydrology dynamics. Y1 - 2006 UR - 1960 = dx.doi.org/10.1560/IJES_55_2_103 ER - TY - JOUR A1 - Raynaud, Fabrice A1 - Jond-Necand, Carole A1 - Marcilhac, Anne A1 - Fürst, Dieter A1 - Benyamin, Yves T1 - Calpain 1-gamma filamin interaction in muscle cells : a possible in situ regulation by PKC-alpha N2 - Calpains are a family of calcium-dependant cysteine-proteases involved in cytoskeleton remodelling and muscle differentiation. In a recent study, we observed the presence of calpain I in the muscle contractile apparatus and specifically in the N1- and N2-fines. This calpain isoform was found to be involved in the degradation of muscle fibres via proteolysis of key proteins in Z-disk and costameric junctions. The goal of this study was to determine whether gamma-filamin - a specific muscle isoform of the filamin family - is a calpain, I substrate and to characterise this interaction. gamma-Filamin is a major muscle architectural protein located in the Z-fine and under the sarcolemmal membrane. This protein is a component of the chain binding the sarcolemma to the sarcomeric structure. In this study, we found that gamma-filamin formed a stable complex in vitro and in cells with calpain I in the absence of calcium stimulation. We also located the binding domains in the C-terminus of gamma-filamin with a cleavage site between serine 2626 and serine 2627 in the hinge 2 region. The catalytic (80 kDa) and regulatory (28 kDa) subunits of calpain I are both involved in high affinity binding at gamma-filamin. Moreover, we showed that phosphorylation of the filamin C- terminus domain by PKC alpha protected gamma-filamin against proteolysis by calpain I in COS cells. Stimulation of PKC activity in myotubes, prevented gamma-filamin proteolysis by calpain and resulted in an increase in myotube adhesion. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/13572725 U6 - https://doi.org/10.1016/j.biocel.2005.09.020 SN - 1357-2725 ER - TY - JOUR A1 - Berger, Dieter A1 - Walters, R. J. A1 - Gotthard, K. T1 - What limits insect fecundity? : Body size- and temperature-dependent egg maturation and oviposition in a butterfly N2 - * 1. Large female insects usually have high potential fecundity. Therefore selection should favour an increase in body size given that these females get opportunities to realize their potential advantage by maturing and laying more eggs. However, ectotherm physiology is strongly temperature-dependent, and activities are carried out sufficiently only within certain temperature ranges. Thus it remains unclear if the fecundity advantage of a large size is fully realized in natural environments, where thermal conditions are limiting. * 2. Insect fecundity might be limited by temperature at two levels; first eggs need to mature, and then the female needs time for strategic ovipositing of the egg. Since a female cannot foresee the number of oviposition opportunities that she will encounter on a given day, the optimal rate of egg maturation will be governed by trade-offs associated with egg- and time-limited oviposition. As females of different sizes will have different amounts of body reserves, size-dependent allocation trade-offs between the mother"s condition and her egg production might be expected. * 3. In the temperate butterfly Pararge aegeria, the time and temperature dependence of oviposition and egg maturation, and the interrelatedness of these two processes were investigated in a series of laboratory experiments, allowing a decoupling of the time budgets for the respective processes. * 4. The results show that realized fecundity of this species can be limited by both the temperature dependence of egg maturation and oviposition under certain thermal regimes. Furthermore, rates of oviposition and egg maturation seemed to have regulatory effects upon each other. Early reproductive output was correlated with short life span, indicating a cost of reproduction. Finally, large females matured more eggs than small females when deprived of oviposition opportunities. Thus, the optimal allocation of resources to egg production seems dependent on female size. * 5. This study highlights the complexity of processes underlying rates of egg maturation and oviposition in ectotherms under natural conditions. We further discuss the importance of temperature variation for egg- vs. time-limited fecundity and the consequences for the evolution of female body size in insects. Y1 - 2008 UR - http://dx.doi.org/10.1111/j.1365-2435.2008.01392.x U6 - https://doi.org/10.1111/j.1365-2435.2008.01392.x SN - 0269-8463 ER - TY - JOUR A1 - Gerloff-Elias, Antje A1 - Barua, Deepak A1 - Mölich, Andreas A1 - Spijkerman, Elly T1 - Temperature- and pH-dependent accumulation of heat-shock proteins in the acidophilic green alga Chlamydomonas acidophila N2 - Chlamydomonas acidophila, a unicellular green alga, is a dominant phytoplankton species in acidic water bodies, facing severe environmental conditions such as low pH and high heavy metal concentrations. We examined the pH-, and temperature-dependent accumulation of heat-shock proteins in this alga to determine whether heat-shock proteins play a role in adaptation to their environment. Our results show increased heat-shock proteins accumulation at suboptimal pHs, which were not connected with any change in intracellular pH. In comparison to the mesophilic Chlamydomonas reinhardtii, the acidophilic species exhibited significantly higher accumulations of heat-shock proteins under control conditions, indicating an environmental adaptation of increased basal levels of heat-shock proteins. The results suggest that heat- shock proteins might play a role in the adaptation of C. acidophila, and possibly other acidophilic algae, to their extreme environment Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0168-6496 U6 - https://doi.org/10.1111/j.1574-6941.2006.00078.x SN - 0168-6496 ER - TY - JOUR A1 - Oesterhelt, Christine A1 - Schmälzlin, Elmar A1 - Schmitt, Jürgen M. A1 - Lokstein, Heiko T1 - Regulation of photosynthesis in the unicellular acidophilic red alga Galdieria sulphuraria N2 - Extremophilic organisms are gaining increasing interest because of their unique metabolic capacities and great biotechnological potential. The unicellular acidophilic and mesothermophilic red alga Galdieria sulphuraria (074G) can grow autotrophically in light as well as heterotrophically in the dark. In this paper, the effects of externally added glucose on primary and secondary photosynthetic reactions are assessed to elucidate mixotrophic capacities of the alga. Photosynthetic O-2 evolution was quantified in an open system with a constant Supply Of CO2 to avoid rapid volatilization of dissolved inorganic carbon at low pH levels. In the presence of glucose, O-2 evolution was repressed even in illuminated cells. Ratios of variable to maximum chlorophyll fluorescence (F-v/F-m) and 77 Kfluorescence spectra indicated a reduced photochemical efficiency of photosystem II. The results were corroborated by strongly reduced levels of the photosystem 11 reaction centre protein D1. The downregulation of primary photosynthetic reactions was accompanied by reduced levels of the Calvin Cycle enzyme ribu lose-1,5-bisphosphate carboxylaselfoxygenase (Rubisco). Both effects depended on functional sugar uptake and are thus initiated by intracellular rather than extracellular glucose. Following glucose depletion, photosynthetic O-2 evolution of illuminated cells commenced after 15 h and Rubisco levels again reached the levels of autotrophic cells. It is concluded that true mixotrophy, involving electron transport across both photosystems, does not occur in G. sulphuraria 074G, and that heterotrophic growth is favoured over autotrophic growth if sufficient organic carbon is available. Y1 - 2007 UR - http://onlinelibrary.wiley.com/doi/10.1111/tpj.2007.51.issue-3/issuetoc U6 - https://doi.org/10.1111/j.1365-313X.2007.03159.x ER - TY - JOUR A1 - Leimu, Roosa A1 - Koricheva, Julia T1 - A meta-analysis of genetic correlations between plant resistances to multiple enemies N2 - Genetic correlations between plant resistances to multiple natural enemies are important because they have the potential to determine the mode of selection that natural enemies impose on a host plant, the structure of herbivore and pathogen communities, and the success of plant breeding for resistance to multiple diseases and pests. We conducted a meta-analysis of 29 published studies of 16 different plant species reporting a total of 467 genetic correlations between resistances to multiple herbivores or pathogens. In general, genetic associations between resistances to multiple natural enemies tended to be positive regardless of the breeding design, type of attacker, and type of host plant. Positive genetic correlations between resistances were stronger when both attackers were pathogens or generalist herbivores and when resistance to different enemies was tested independently, suggesting that generalists may be affected by the same plant resistance traits and that interactions among natural enemies are common. Although the mean associations between resistances were positive, indicating the prevalence of diffuse selection and generalized defenses against multiple enemies, the large variation in both the strength and the direction of the associations suggests a continuum between pairwise and diffuse selection Y1 - 2006 UR - http://www.jstor.org/action/showPublication?journalCode=amernatu U6 - https://doi.org/10.1086/505766 SN - 0003-0147 ER - TY - JOUR A1 - Legall, Herbert A1 - Stiel, Holger A1 - Beck, Michael A1 - Leupold, Dieter A1 - Gruszecki, Wieslaw I. A1 - Lokstein, Heiko T1 - Near edge X-ray absorption fine structure spectroscopy (NEXAFS) of pigment-protein complexes : peridinin- chlorophyll a-protein (PCP) of Amphidinium carterae N2 - Peridinin-chlorophyll a protein (PCP) is a unique water soluble antenna complex that employs the carotenoid peridinin as the main light-harvesting pigment. In the present study the near edge X-ray absorption fine structure (NEXAFS) spectrum of PCP was recorded at the carbon Kedge. Additionally, the NEXAFS spectra of the constituent pigments, chlorophyll a and peridinin, were measured. The energies of the lowest unoccupied molecular levels of these pigments appearing in the carbon NEXAFS spectrum were resolved. Individual contributions of the pigments and the protein to the measured NEXAFS spectrum of PCP were determined using a "building block" approach combining NEXAFS spectra of the pigments and the amino acids constituting the PCP apoprotein. The results suggest that absorption changes of the pigments in the carbon near K-edge region can be resolved following excitation using a suitable visible pump laser pulse. Consequently, it may be possible to study excitation energy transfer processes involving "optically dark" states of carotenoids in pigment-protein complexes by soft X-ray probe optical pump double resonance spectroscopy (XODR). Y1 - 2007 UR - http://www.sciencedirect.com/science/journal/0165022X U6 - https://doi.org/10.1016/j.jbbm.2006.08.005 SN - 0165-022X ER - TY - JOUR A1 - Schmidtke, Andrea A1 - Bell, Elanor M. A1 - Weithoff, Guntram T1 - Potential grazing impact of the mixotrophic flagellate Ochromonas sp. (Chrysophyceae) on bacteria in an extremely acidic lake N2 - Flagellates are important bacterial grazers in most planktonic food webs. The prey-size preference of the mixotrophic flagellate, Ochromonas sp. (Chrysophyceae), isolated from an extremely acidic lake, Lake 111 (pH 2.6), was determined using fluorescently labelled microspheres (beads). According to grazing experiments with cultured bacteria, also isolated from Lake 111, the potential grazing impact on Lake 111"s single-celled bacterial production was calculated. Ochromonas sp. ingested the smallest beads offered (0.5 µm diameter) at the highest rate. Ingestion rate declined with increasing bead size. The highest prey volume-specific ingestion was measured for Ochromonas sp. feeding on intermediate-sized beads (1.9 µm). Ingestion rates were low due in part to the large fraction of inactive flagellates observed. According to the bacterial ingestion rate, a mean of 88% (epilimnion) and 68% (hypolimnion) of in situ single- celled bacterial production is potentially grazed daily by Ochromonas sp. In the epilimnion of Lake 111, the heterotrophic carbon gain is three times higher than the autotrophic production. Alongside carbon uptake, Ochromonas sp. also benefits from ingesting bacteria through the uptake of phosphorus. A biovolume minimum corresponding to the prey size at which Ochromonas sp. feeds most efficiently occurred in the Lake 111 epilimnetic bacterial community, implying top-down control of the bacterial community by Ochromonas sp. Y1 - 2006 UR - http://plankt.oxfordjournals.org/content/28/11/991.full U6 - https://doi.org/10.1093/plankt/fbl034 SN - 0142-7873 SN - 1464-3774 VL - 28 IS - 11 SP - 991 EP - 1001 PB - Oxford University Press CY - Oxford ER - TY - JOUR A1 - Herzschuh, Ulrike A1 - Kürschner, Harald A1 - Mischke, Steffen T1 - Temperature variability and vertical vegetation belt shifts during the last similar to 50,000 yr in the Qilian Mountains (NE margin of the Tibetan Plateau, China) N2 - A 13.94-m-long sediment core, collected from a medium-sized lake in the Qilian Mountains (NE Tibetan Plateau, China), was analysed palynologically at 81 horizons. The interpretation of indicator taxa yielded various vertical shifts of the vegetation belts. These palaeovegetation results have been checked with lake surface pollen spectra from 8 takes representing different altitudinal vegetation belts. Our main findings are the following: A short period of the late Marine Isotope Stage 3 (around similar to 46,000 yr ago) was characterized by interglacial temperature conditions with a tree line above its present-day altitude. During the LGM, the vicinity of the lake was not covered by ice but by sparse alpine vegetation and alpine deserts, indicating that the climate was colder by similar to 4-7 degrees C than today Markedly higher temperatures were inferred from higher arboreal pollen frequencies between similar to 13,000 and similar to 7000 yr ago with a Holocene temperature optimum and a maximal Picea-Betula mixed-forest expansion between similar to 9000 and similar to 7000 yr ago, when temperatures exceeded the present-day conditions by at least 1-2 degrees C. Alpine steppes and meadows and sub-alpine shrub vegetation dominated around the lake since the middle Holocene, suggesting that vegetation and climate conditions were exceptionally stable in comparison to previous periods. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/00335894 U6 - https://doi.org/10.1016/j.yqres.2006.03.001 SN - 0033-5894 ER - TY - JOUR A1 - Wichmann, Matthias A1 - Dean, W. R. J. A1 - Jeltsch, Florian T1 - Predicting the breeding success of large raptors in arid southern Africa : a first assessment N2 - Raptors are often priorities for conservation efforts and breeding success is a target measure for assessing their conservation status. The breeding success of large raptors in and southern Africa is thought to be higher in years of high rainfall. While this correlation has been found in several studies, it has not yet been shown for data from a wider geographical area. In conservation research, it is important to explore the differences between spatially- separated populations to estimate and to compare their conservation status, and to deduce specific management strategies. Using a theoretical approach, we develop a simplistic model to explain the breeding success-rainfall relationship in large African raptors at larger spatial scales. Secondly, we validate this model and we show that the inclusion of field data leads to consistent predictions. In particular, we recommend that the average size of the 'effective territory' should be included in the relationship between annual rainfall and breeding success of raptors in and southern Africa. Accordingly, we suggest that breeding success is a function of precipitation and inter- nest distance. We present a new measure of territory quality depending on rainfall and territory size. We suggest that our model provides a useful first approach to assess breeding success in large raptors of and southern Africa. However, we strongly emphasise the need to gather more data to further verify our model. A general problem in conservation research is to compare the status of populations assessed in different study areas under changing environmental conditions. Our simplistic approach indicates that this problem can be overcome by using a weighted evaluation of a target measure (i.e. breeding success), taking regional differences into account Y1 - 2006 ER - TY - JOUR A1 - Kamjunke, Norbert A1 - Bohn, Christiane A1 - Grey, John T1 - Utilisation of dissolved organic carbon from different sources by pelagic bacteria in an acidic mining lake N2 - We compared growth rates and efficiencies of pelagic bacteria from an extremely acidic mining lake (pH 2.6, mean depth 4.6m) supplied with different sources of carbon: (1) excreted by phytoplankton, (2) derived from benthic algae, (3) entering the lake via ground water, and (4) leached from leaf litter. Bacteria exhibited high growth rate and efficiency on exudates of pelagic and benthic algae. In contrast, they showed a lower growth rate and efficiency with organic carbon from ground water, and grew at a very high rate but a very low efficiency on leaf leachate. Results from stable isotope analyses indicate a greater importance of benthic exudates and leaf leachate for bacteria in the epilimnion, and a higher impact of ground water sources in the hypolimnion. Given the magnitude of differential source inputs into the lake, we suggest that benthic primary production was the most important carbon source for pelagic bacteria. The benthic-pelagic coupling seems to be more relevant in this shallow acidic lake with low pelagic carbon dioxide concentrations than in neutral lakes Y1 - 2006 UR - http://www.schweizerbart.de/j/archiv-hydrobiologie/ U6 - https://doi.org/10.1127/0003-9136/2006/0165-0355 SN - 0003-9136 ER - TY - JOUR A1 - Hlinak, Andreas A1 - Mühle, Ralf-Udo A1 - Werner, Ortrud A1 - Globig, Anja A1 - Starick, Elke A1 - Schirrmeier, Horst A1 - Hoffmann, Bernd A1 - Engelhardt, Andreas A1 - Hübner, Dagmar A1 - Conraths, Franz J. A1 - Wallschläger, Hans-Dieter A1 - Kruckenberg, Helmut A1 - Müller, Thomas T1 - A virological survey in migrating waders and other waterfowl in one of the most important resting sites of Germany N2 - Wild birds are considered a potential reservoir or a carrier of viral diseases and may therefore play a role in the epidemiology of economically important or zoonotic diseases. In 2001 and 2002, a survey with special emphasis oil virus isolation in migrating waders and some other birds were conducted. In one of the most important inland resting sites for migratory waterfowl, tracheal and cloacal swabs were collected from 465 waders representing 19 different species, and 165 other birds that were not captured on purpose. A total of 42 avian viruses were isolated, 34 of these were identified as paramyxoviruses (PMVs). The majority of isolates came from waders and wild ducks, and were characterized as PMV-1. In contrast, PMV-4 was found in wild ducks only, PMV-6 was mainly detected in wader species. Four avian influenza viruses (ATVs), belonging to H4 and H3 haemagglutinin subtype, were isolated from wild duck species. Furthermore, four reo-like viruses were isolated from one particular wader species for the first time. The majority of virus positive birds were < 1 year old and did not show any clinical symptoms. There was no evidence for the presence of West Nile virus in these birds. These results confirm that the restricted resting sites in Western Europe must be considered as important locations for the intra- and interspecies transmission of avian viruses Y1 - 2006 SN - 0931-1793 ER - TY - JOUR A1 - Sezer, Murat A1 - Spricigo, Roberto A1 - Utesch, Tillmann A1 - Millo, Diego A1 - Leimkühler, Silke A1 - Mroginski, Maria A. A1 - Wollenberger, Ursula A1 - Hildebrandt, Peter A1 - Weidinger, Inez M. T1 - Redox properties and catalytic activity of surface-bound human sulfite oxidase studied by a combined surface enhanced resonance Raman spectroscopic and electrochemical approach N2 - Human sulfite oxidase (hSO) was immobilised on SAM-coated silver electrodes under preservation of the native heme pocket structure of the cytochrome b5 (Cyt b5) domain and the functionality of the enzyme. The redox properties and catalytic activity of the entire enzyme were studied by surface enhanced resonance Raman (SERR) spectroscopy and cyclic voltammetry (CV) and compared to the isolated heme domain when possible. It is shown that heterogeneous electron transfer and catalytic activity of hSO sensitively depend on the local environment of the enzyme. Increasing the ionic strength of the buffer solution leads to an increase of the heterogeneous electron transfer rate from 17 s(-1) to 440 s(- 1) for hSO as determined by SERR spectroscopy. CV measurements demonstrate an increase of the apparent turnover rate for the immobilised hSO from 0.85 s(-1) in 100 mM buffer to 5.26 s(-1) in 750 mM buffer. We suggest that both effects originate from the increased mobility of the surface-bound enzyme with increasing ionic strength. In agreement with surface potential calculations we propose that at high ionic strength the enzyme is immobilised via the dimerisation domain to the SAM surface. The flexible loop region connecting the Moco and the Cyt b5 domain allows alternating contact with the Moco interaction site and the SAM surface, thereby promoting the sequential intramolecular and heterogeneous electron transfer from Moco via Cyt b5 to the electrode. At lower ionic strength, the contact time of the Cyt b5 domain with the SAM surface is longer, corresponding to a slower overall electron transfer process. Y1 - 2010 UR - http://www.rsc.org/Publishing/Journals/CP/index.asp U6 - https://doi.org/10.1039/B927226g SN - 1463-9076 ER - TY - JOUR A1 - Johansson, Ingela A1 - Wulfetange, Klaas A1 - Poree, Fabien A1 - Michard, Erwan A1 - Gajdanowicz, Pawel A1 - Lacombe, Benoit A1 - Sentenac, Herve A1 - Thibaud, Jean-Baptiste A1 - Müller-Röber, Bernd A1 - Blatt, Michael R. A1 - Dreyer, Ingo T1 - External K+ modulates the activity of the Arabidopsis potassium channel SKOR via an unusual mechanism N2 - Plant outward-rectifying K+ channels mediate K+ efflux from guard cells during stomatal closure and from root cells into the xylem for root-shoot allocation of potassium (K). Intriguingly, the gating of these channels depends on the extracellular K+ concentration, although the ions carrying the current are derived from inside the cell. This K+ dependence confers a sensitivity to the extracellular K+ concentration ([K+]) that ensures that the channels mediate K+ efflux only, regardless of the [K+] prevailing outside. We investigated the mechanism of K+-dependent gating of the K+ channel SKOR of Arabidopsis by site-directed mutagenesis. Mutations affecting the intrinsic K+ dependence of gating were found to cluster in the pore and within the sixth transmembrane helix (S6), identifying an 'S6 gating domain' deep within the membrane. Mapping the SKOR sequence to the crystal structure of the voltage-dependent K+ channel KvAP from Aeropyrum pernix suggested interaction between the S6 gating domain and the base of the pore helix, a prediction supported by mutations at this site. These results offer a unique insight into the molecular basis for a physiologically important K+-sensory process in plants Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0960-7412 U6 - https://doi.org/10.1111/j.1365-313X.2006.02690.X SN - 0960-7412 ER - TY - JOUR A1 - Plath, Martin A1 - Rohde, Matthias A1 - Schröder, Thekla A1 - Taebel-Hellwig, Angelika A1 - Schlupp, Ingo T1 - Female mating preferences in blind cave tetras Astyanax fasciatus (Characidae, Teleostei) N2 - The Mexican tetra Astyanax fasciatus has evolved a variety of more or less color- and eyeless cave populations. Here we examined the evolution of the female preference for large male body size within different populations of this species, either surface- or cave-dwelling. Given the choice between visual cues from a large and a small male, females from the surface form as well as females from an eyed cave form showed a strong preference for large males. When only non-visual cues were presented in darkness, the surface females did not prefer either males. Among the six cave populations studied, females of the eyed cave form and females of one of the five eyeless cave populations showed a preference for large males. Apparently, not all cave populations of Astyanax have evolved non-visual mating preferences. We discuss the role of selection by benefits of non-visual mate choice for the evolution of non-visual mating preferences Y1 - 2006 UR - http://www.bibliothek.uni-regensburg.de/ezeit/?2007939 U6 - https://doi.org/10.1163/156853906775133560 SN - 0005-7959 ER - TY - JOUR A1 - VanderVen, Peter F. M. A1 - Ehler, Elisabeth A1 - Vakeel, Padmanabhan A1 - Eulitz, Stefan A1 - Schenk, Jörg A. A1 - Milting, Hendrik A1 - Micheel, Burkhard A1 - Fürst, Dieter Oswald T1 - Unusual splicing events result in distinct Xin isoforms that associate differentially with filamin c and Mena/ VASP N2 - Filamin c is the predominantly expressed filamin isoform in striated muscles. It is localized in myofibrillar Z- discs, where it binds FATZ and myotilin, and in myotendinous junctions and intercalated discs. Here, we identify Xin, the protein encoded by the human gene 'cardiomyopathy associated 1' (CMYA1) as filamin c binding partner at these specialized structures where the ends of myofibrils are attached to the sarcolemma. Xin directly binds the EVH1 domain proteins Mena and VASP. In the adult heart, Xin and Mena/VASP colocalize with filamin c in intercalated discs. In cultured cardiomyocytes, the proteins also localize in the nonstriated part of myofibrils, where sarcomeres are assembled and an extensive reorganization of the actin cytoskeleton occurs. Unusual intraexonic splicing events result in the existence of three Xin isoforms that associate differentially with its ligands. The identification of the complex filamin c-Xin-Mena/VASP provides a first glance on the role of Xin in the molecular mechanisms involved in developmental and adaptive remodeling of the actin cytoskeleton during cardiac morphogenesis and sarcomere assembly. (c) 2006 Elsevier Inc. All rights reserved Y1 - 2006 U6 - https://doi.org/10.1016/j.yexcr.2006.03.015 ER - TY - JOUR A1 - Schiffers, Katja A1 - Tielbörger, Katja T1 - Ontogenetic shifts in interactions among annual plants N2 - 1.Interactions among plants are key processes that strongly influence the structure and dynamics of plant populations and communities. However, most empirical studies of plant-plant inter­actions failed to repeatedly measure the plants? response to neighboring individuals and thereby neglected possible changes in interactions through­out the life history of the plants.2.Here, we tested the hypo­thesis that competition between annual species intensifies from early to late life history stages. To test this hypothesis, we sequentially measured interactions at different levels of water stress. 3.For this purpose, we con­ducted neighbor-removal experiments in three study sites located along a climatic gradient in Israel. The two annual species Biscutella didyma and Hymenocarpos circinnatus were used as target plants. They grew with and without neighbors in their natural habitats. Five response variables, according to the consecutive life-history stages, (seedling survival, juvenile biomass, adult survival, number of seeds and final biomass) were recorded through­out the whole growing season. 4.The results suggest that direction and inten­sity of inter­actions varied consider­ably between environ­ments and life stages. On average, growth-related response variables indicated higher competition intensity at the productive end of the climatic gradient, while survival indicated either facilitation at the dry end or no trend along the gradient. 5.Considering the temporal aspect, moderate facili­tation short after germi­nation shifted to strong compe­tition at the end of the growing season. 6.Our results highlight that the outcome of experi­mental studies on plant-plant inter­actions may not only depend on the environ­mental productivity but even more on the life stage at which a target plant is found. Y1 - 2006 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2745.2006.01097.x/pdf U6 - https://doi.org/10.1111/j.1365-2745.2006.01097.x ER - TY - JOUR A1 - Tews, Jörg A1 - Esther, Alexandra A1 - Milton, Sue J. A1 - Jeltsch, Florian T1 - Linking a population model with an ecosystem model : assessing the impact of land use and climate change on savanna shrub cover dynamics N2 - In semiarid savannas of Southern Africa current land use practices and climate change may lead to substantial changes of vegetation structure in the near future, however uncertainty remains about the potential consequences and the magnitude of change. In this paper we study the impact of climate change, cattle grazing, and wood cutting on shrub cover dynamics in savannas of the southern Kalahari. We use an established savanna ecosystem model to simulate landscape dynamics in terms of rainfall, fire and distribution of the dominant tree Acacia erioloba. We then incorporate these data into a spatial population model of the common, fleshy-fruited shrub Grewia flava and investigate shrub cover dynamics for a period of 100 years. Depending on the intensity of commercial wood cutting practices tree removal of A. erioloba led to a strong decline of the G. flava population, as shrub recruitment is concentrated in tree sub-canopies due to bird-mediated seed dispersal. Under climate change shrub cover slightly decreased with decreasing precipitation and was unchanged with increase in precipitation variability. Contrarily, grazing by cattle strongly increased shrub cover and facilitated shrub encroachment because of cattle-induced distribution of G. flava seeds into the matrix vegetation. Knowledge of the latter process is particularly important because shrub invasion is a major concern for conservation and savanna rangeland management as a result of its adverse effects on livestock carrying capacity and biodiversity Y1 - 2006 UR - http://www.mendeley.com/research/linking-a-population-model-with-an-ecosystem-model-assessing-the-impact- of-land-use-and-climate-change-on-savanna-shrub-cover-dynamics/#page-1 U6 - https://doi.org/10.1016/j.ecolmodel.2005.11.025 ER - TY - JOUR A1 - Eccard, Jana A1 - Dean, W. Richard J. A1 - Wichmann, Matthias A1 - Huttunen, S. M A1 - Eskelinen, Eeva-Liisa A1 - Moloney, Kirk A. A1 - Jeltsch, Florian T1 - Use of large Acacia trees by the cavity dwelling Black-tailed Tree Rat in the southern Kalahari N2 - Recent extensive harvesting of large, often dead Acacia trees in and savanna of southern Africa is cause for concern about the conservation status of the arid savanna and its animal community. We mapped vegetation and nests of the Black-tailed Tree Rat Thallomy's nigricauda to assess the extent to which the rats depend on particular tree species and on the existence of dead, standing trees. The study was conducted in continuous Acacia woodland on the southern and eastern edge of the Kalahari, South Africa. Trees in which there were tree rat nests were compared with trees of similar size and vigour to identify the characteristics of nest sites. Spatial analysis of tree rat distribution was conducted using Ripley's-L function. We found that T nigricauda was able to utilize all available tree species, as long as trees were large and old enough so that cavities were existing inside the stem. The spatial distribution of nest trees did not show clumping at the investigated scale, and we therefore reject the notion of the rats forming colonies when inhabiting continuous woodlands. The selection of a particular tree as a nest site was furthermore depending on the close proximity of the major food plant, Acacia mellifera. This may limit the choice of suitable nest sites. since A. mellifera was less likely to grow within a vegetation patch containing a large trees than in patches without large trees. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/01401963 U6 - https://doi.org/10.1016/j.jaridenv.2005.06.019 SN - 0140-1963 ER - TY - JOUR A1 - Thamm, Markus A1 - Schmidt, Stephanie L. A1 - Bernhard, Detlef T1 - Insights into the phylogeny of the genus stentor (heterotrichea, ciliophora) with special emphasis on the evolution of the macronucleus based on SSU rDNA data N2 - Representatives of the genus Stentor (Stentoridae, Heterotrichea) are striking ciliates in environmental water samples because of their size (up to 4 mm) and their trumpet-like shape. Important for species identification are the following main characteristics: (1) the presence or absence of endosymbiotic algae (zoochlorellae); (2) the colour of the pigmented cortical granules, and (3) the shape of the macronucleus. The complete small subunit rDNA (SSU rDNA) of 19 further representatives of the genus Stentor was sequenced to examine the phylogenetic relationships within this genus and to determine the taxonomic value of these main characteristics. The detailed phylogenetic analyses yielded a separation of all species possessing a single compact macronucleus from those species with an "elongated" macronucleus (moniliform or vermiform). The data also indicate that the uptake of algae as well as the loss of pigmentation happened independently in different lineages. Furthermore, a high level of intraspecific variation within several species was found. Thus, S. muelleri and S. (sp.) cf. katashimai appear to represent distinct species and S. multiformis is composed of a species complex. Y1 - 2010 UR - http://www1.nencki.gov.pl/ap-archive.htm SN - 0065-1583 ER - TY - JOUR A1 - Blasig, Ingolf E. A1 - Winkler, Lars A1 - Lassowski, Birgit A1 - Müller, Sandra L. A1 - Zuleger, Nikolaj A1 - Krause, Eberhard A1 - Krause, Gerd A1 - Gast, Klaus A1 - Kolbe, Michael A1 - Piontek, Jörg T1 - On the self-association potential of transmembrane tight junction proteins N2 - Tight junctions seal intercellular clefts via membrane-related strands, hence, maintaining important organ functions. We investigated the self-association of strand-forming transmembrane tight junction proteins. The regulatory tight junction protein occludin was differently tagged and cotransfected in eucaryotic cells. These occludins colocalized within the plasma membrane of the same cell, coprecipitated and exhibited fluorescence resonance energy transfer. Differently tagged strand-forming claudin-5 also colocalized in the plasma membrane of the same cell and showed fluorescence resonance energy transfer. This demonstrates self-association in intact cells both of occludin and claudin-5 in one plasma membrane. In search of dimerizing regions of occludin, dimerization of its cytosolic C-terminal coiled-coil domain was identified. In claudin-5, the second extracellular loop was detected as a dimer. Since the transmembrane junctional adhesion molecule also is known to dimerize, the assumption that homodimerization of transmembrane tight junction proteins may serve as a common structural feature in tight junction assembly is supported Y1 - 2006 UR - http://www.springerlink.com/content/101193 U6 - https://doi.org/10.1007/s00018-005-5472-x SN - 1420-682X ER - TY - JOUR A1 - Deschamps, Philippe A1 - Haferkamp, Ilka A1 - Dauvillee, David A1 - Haebel, Sophie A1 - Steup, Martin A1 - Buleon, Alain A1 - Putaux, Jean-Luc A1 - Colleoni, Christophe A1 - d'Hulst, Christophe A1 - Plancke, Charlotte A1 - Gould, Sven A1 - Maier, Uwe A1 - Neuhaus, Heinz Eckhard A1 - Ball, Steven G. T1 - Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta N2 - The nature of the periplastidial pathway of starch biosynthesis was investigated with the model cryptophyte Guillardia theta. The storage polysaccharide granules were shown to be composed of both amylose and amylopectin fractions with a chain length distribution and crystalline organization very similar to those of starch from green algae and land plants. Most starch granules displayed a shape consistent with biosynthesis occurring around the pyrenoid through the rhodoplast membranes. A protein with significant similarity to the amylose-synthesizing granule-bound starch syntbase 1 from green plants was found as the major polypeptide bound to the polysaccharide matrix. N-terminal sequencing of the mature protein proved that the precursor protein carries a nonfunctional transit peptide in its bipartite topogenic signal sequence which is cleaved without yielding transport of the enzyme across the two inner plastid membranes. The enzyme was shown to display similar affinities for ADP and UDP-glucose, while the V-max measured with UDP-glucose was twofold higher. The granule-bound starch synthase from Guillardia theta was demonstrated to be responsible for the synthesis of long glucan chains and therefore to be the functional equivalent of the amylose- synthesizing enzyme of green plants. Preliminary characterization of the starch pathway suggests that Guillardia theta utilizes a UDP-glucose-based pathway to synthesize starch Y1 - 2006 UR - http://ec.asm.org/ U6 - https://doi.org/10.1128/Ec.00380-05 SN - 1535-9778 ER - TY - JOUR A1 - Lettau, Kristian A1 - Warsinke, Axel A1 - Katterle, Martin A1 - Danielsson, Bengt A1 - Scheller, Frieder W. T1 - A bifunctional molecularly imprinted polymer (MIP): analysis of binding and catalysis by a thermistor N2 - Binding or catalysis? Both can be distinguished with a molecularly imprinted polymer (MIP) by the different patterns of heat generation. The catalytically active sites, like in the corresponding enzyme, generate a steady-state temperature increase. Thus, enzyme-like catalysis and antibody-analogue binding are analyzed simultaneously in a bifunctional MIP for the first time (see scheme). Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/26737/ U6 - https://doi.org/10.1002/anie.200601796 ER - TY - JOUR A1 - Teller, C. A1 - Halamek, Jan A1 - Makower, Alexander A1 - Fournier, Didier A1 - Schulze, H. A1 - Scheller, Frieder W. T1 - A piezoelectric sensor with propidium as a recognition element for cholinesterases N2 - A piezoelectric biosensor has been developed on the basis of the reversible acetylcholinesterase (AChE) inhibitor propidium. The propidium cation was bound to a 11-mercaptoundecanoic acid monolayer on gold-coated quartz crystals. The immobilization was done via activation of carboxyl groups by 1,3-dicyclohexylcarbodiimide (DCC). Different types of cholinesterases (acetyl- and butyryl-ChE) from different origins were tested for their binding ability towards the immobilized propidium. Binding Studies were performed in a flow system, Furthermore, catalytically active and organophosphate-inhibited enzyme were compared re-aiding their binding capability. The binding constants were derived by using an one to one binding model and a refined model also including rebinding effects. It was shown that organophosphorylation of the active site hardly influences the affinity of AChE towards propidium. Furthermore the propidium-based biosensor provides equal sensitivity as compared with piezolelectric sensors with immobilized paraoxon- an active site ligand of AChE. (c) 2005 Elsevier B.V. All rights reserved Y1 - 2006 U6 - https://doi.org/10.1016/j.snb.2005.02.053 ER - TY - JOUR A1 - Feulner, Philine G. D. A1 - Kirschbaum, Frank A1 - Schugardt, Christian A1 - Ketmaier, Valerio A1 - Tiedemann, Ralph T1 - Electrophysiological and molecular genetic evidence for sympatrically occuring cryptic species in African weakly electric fishes (Teleostei : Mormyridae : Campylomormyrus) N2 - For two sympatric species of African weakly electric fish, Campylomormyrus tamandua and Campylomormyrus numenius, we monitored ontogenetic differentiation in electric organ discharge (EOD) and established a molecular phylogeny, based on 2222 bp from cytochrome b, the S7 ribosomal protein gene, and four flanking regions of unlinked microsatellite loci. In C tamandua, there is one common EOD type, regardless of age and sex, whereas in C numenius we were able to identify three different male adult EOD waveform types, which emerged from a single common EOD observed in juveniles. Two of these EOD types formed well supported clades in our phylogenetic analysis. In an independent line of evidence, we were able to affirm the classification into three groups by microsatellite data. The correct assignment and the high pairwise FST values support our hypothesis that these groups are reproductively isolated. We propose that in C numenius there are cryptic species, hidden behind similar and, at least as juveniles, identical morphs. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/10557903 U6 - https://doi.org/10.1016/j.ympev.2005.09.008 SN - 1055-7903 ER - TY - JOUR A1 - Seifert, Birgit A1 - Fischer, Markus T1 - Experimental establishment of a declining dry-grassland flagship species in relation to seed origin and target environment N2 - Supporting species persistence may involve (re)connecting suitable habitats. However, for many declining species habitat suitability and drivers of establishment are poorly known. We addressed this experimentally for a declining flagship species of dry grasslands in Germany, Armeria maritima subsp. elongata. In three regions, we sowed seeds from each of eight source populations back to their origin and to eight apparently suitable, but currently unoccupied, habitats close to the source populations. Overall, seeds germinated and seedlings established equally well in occupied and potential sites indicating that suitable habitats are available, but lack seed input. Germination and establishment varied among sowing sites. Moreover, seeds from populations of lower current connectivity established less well in new sites, and establishment was more variable among seeds from smaller than from larger populations, possibly reflecting genetic consequences of habitat fragmentation. Further, establishment across different new environments differed between seeds from different populations. As this was neither related to a home-away contrast nor to geographic or environmental distance between sites it could not clearly be attributed to local adaptation. To promote long-term persistence within this dry-grassland meta-population context we suggest increasing the density of suitable habitats and supporting dispersal connecting multiple sites, e.g. by promoting sheep transhumance, to increase current populations and their connectivity, and to colonise suitable habitats with material from different sources. We suggest that sowing experiments with characteristic species, including multiple source populations and multiple recipient sites, should be used regularly to inform connecting efforts in plant conservation. Y1 - 2010 UR - http://www.sciencedirect.com/science/journal/00063207 U6 - https://doi.org/10.1016/j.biocon.2010.02.028 SN - 0006-3207 ER - TY - JOUR A1 - Bleidorn, Christoph A1 - Podsiadlowski, Lars A1 - Bartolomaeus, Thomas T1 - The complete mitochondrial genome of the orbiniid polychaete Orbinia latreillii (Annelida, Orbiniidae) : a novel gene order for Annelida and implications for annelid phylogeny N2 - Relationships of annelid subtaxa are controversially discussed and additional markers are necessarily needed to get further insights into their evolution. Due to their high content of information, mitochondrial genomes have been proven very useful in phylogenetic analyses. Whereas many complete mitochondrial genomes of arthropods are available, lophotrochozoan taxa are only scarcely represented and this is especially true for annelids. Here we present the complete mitochondrial genome of the orbiniid polychaete Orbinia latreillii. The circular genome is 15,558 bp in size and contains the same 37 genes as found in most other metazoans. As in the case for all studied annelids all genes are transcribed from the same strand. Compared with the known data from other annelids at least five gene translocations must be hypothesized for O. latreillii. A comparison of the available data shows that gene translocations within Annelida seem to be less frequent than in molluscs, but more frequent as previously assumed. Phylogenetic analyses of mitochondrial DNA sequence data and amino acid data support an inclusion Of Sipuncula within Annelida and a closer relationship to orbiniids is recovered for this taxon. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03781119 U6 - https://doi.org/10.1016/j.gene.2005.11.018 SN - 0378-1119 ER - TY - JOUR A1 - Shirzadian-Khorramabad, Reza A1 - Jing, Hai-Chun A1 - Everts, Gerja E. A1 - Schippers, Jos H. M. A1 - Hille, Jacques A1 - Dijkwel, Paul P. T1 - A mutation in the cytosolic O-acetylserine (thiol) lyase induces a genome-dependent early leaf death phenotype in Arabidopsis N2 - Background: Cysteine is a component in organic compounds including glutathione that have been implicated in the adaptation of plants to stresses. O-acetylserine (thiol) lyase (OAS-TL) catalyses the final step of cysteine biosynthesis. OAS-TL enzyme isoforms are localised in the cytoplasm, the plastids and mitochondria but the contribution of individual OAS-TL isoforms to plant sulphur metabolism has not yet been fully clarified. Results: The seedling lethal phenotype of the Arabidopsis onset of leaf death3-1 (old3-1) mutant is due to a point mutation in the OAS-A1 gene, encoding the cytosolic OAS-TL. The mutation causes a single amino acid substitution from Gly(162) to Glu(162), abolishing old3-1 OAS-TL activity in vitro. The old3-1 mutation segregates as a monogenic semidominant trait when backcrossed to its wild type accession Landsberg erecta (Ler-0) and the Di-2 accession. Consistent with its semi- dominant behaviour, wild type Ler-0 plants transformed with the mutated old3-1 gene, displayed the early leaf death phenotype. However, the old3-1 mutation segregates in an 11: 4: 1 (wild type: semi-dominant: mutant) ratio when backcrossed to the Colombia-0 and Wassilewskija accessions. Thus, the early leaf death phenotype depends on two semi- dominant loci. The second locus that determines the old3-1 early leaf death phenotype is referred to as odd-ler (for old3 determinant in the Ler accession) and is located on chromosome 3. The early leaf death phenotype is temperature dependent and is associated with increased expression of defence-response and oxidative-stress marker genes. Independent of the presence of the odd-ler gene, OAS-A1 is involved in maintaining sulphur and thiol levels and is required for resistance against cadmium stress. Conclusions: The cytosolic OAS-TL is involved in maintaining organic sulphur levels. The old3-1 mutation causes genome-dependent and independent phenotypes and uncovers a novel function for the mutated OAS- TL in cell death regulation. Y1 - 2010 UR - http://www.biomedcentral.com/1471-2229/ U6 - https://doi.org/10.1186/1471-2229-10-80 SN - 1471-2229 ER - TY - JOUR A1 - Halamek, Jan A1 - Teller, Carsten A1 - Zeravik, Jiri A1 - Fournier, Didier A1 - Makower, Alexander A1 - Scheller, Frieder W. T1 - Characterization of binding of cholinesterases to surface immobilized ligands N2 - We summarize here the development of various piezoelectric biosensors utilizing cholinesterase (ChE) as the recognition element. In our work we studied the interaction between cholinesterase and its ligands (propidium, carnitine, benzylgonine-1,8-diamino-3,4-dioxaoctane (BZE-DADOO) and paraoxon). The sensor modification was based on a self-assembled monolayer (SAM) of a thiol compound (11-mercaptoundecanoic acid) on the gold electrode and the subsequent covalent coupling of the cholinesterase ligand to this SAM. The ligand-modified piezoelectric sensors were placed in a flow system to allow the on-line monitoring of cholinesterase binding and the enzymatic activity quantification by amperometry. Cholinesterases from different species-acetylcholinesterase (AChE) from Electrophorus electricus , AChE from Drosophila melanogaster , and butyrylcholinesterase (BChE) of human origin-were tested on the various immobilized ligands. Our research allowed the development of a competitive assay for the detection of organophosphates in river water samples using the BZE-DADOO-modified piezosensor. Another direction of research was pointed on the characterization of the interactions between ChE and its ligands. The kinetic binding constants were derived using a one- to-one binding model Y1 - 2006 UR - http://www.informaworld.com/openurl?genre=journal&issn=0003-2719 U6 - https://doi.org/10.1080/00032710600713107 SN - 0003-2719 ER - TY - JOUR A1 - Hauser, Frank A1 - Cazzamali, Giuseppe A1 - Williamson, Michael A1 - Blenau, Wolfgang A1 - Grimmelikhuijzen, CJ. T1 - A review of neurohormone GPCRs present in the fruitfly "Drosophila melanogaster" and the honey bee "Apis mellifera" N2 - G protein-coupled receptor (GPCR) genes are large gene families in every animal, sometimes making up to 1-2% of the animal's genome. Of all insect GPCRs, the neurohormone (neuropeptide, protein hormone, biogenic amine) GPCRs are especially important, because they, together with their ligands, occupy a high hierarchic position in the physiology of insects and steer crucial processes such as development, reproduction, and behavior. In this paper, we give a review of our current knowledge on Drosophila melanogaster GPCRs and use this information to annotate the neurohormone GPCR genes present in the recently sequenced genome from the honey bee Apis mellifera. We found 35 neuropeptide receptor genes in the honey bee (44 in Drosophila) and two genes, coding for leucine-rich repeats-containing protein hormone GPCRs (4 in Drosophila). In addition, the honey bee has 19 biogenic amine receptor genes (21 in Drosophila). The larger numbers of neurohormone receptors in Drosophila are probably due to gene duplications that occurred during recent evolution of the fly. Our analyses also yielded the likely ligands for 40 of the 56 honey bee neurohormone GPCRs identified in this study. In addition, we made some interesting observations on neurohormone GPCR evolution and the evolution and co-evolution of their ligands. For neuropeptide and protein hormone GPCRs, there appears to be a general co-evolution between receptors and their ligands. This is in contrast to biogenic amine GPCRs, where evolutionarily unrelated GPCRs often bind to the same biogenic amine, suggesting frequent ligand exchanges ("ligand hops") during GPCR evolution. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03010082 U6 - https://doi.org/10.1016/j.pneurobio.2006.07.005 SN - 0301-0082 ER - TY - JOUR A1 - Poschadel, Jens R. A1 - Meyer-Lucht, Yvonne A1 - Plath, Martin T1 - Response to chemical cues from conspecifics reflects male mating preference for large females and avoidance of large competitors in the European pond turtle, Emys orbicularis N2 - We examined chemical communication in male and female European pond turtles (Emys orbicularis). In simultaneous binary choice tests, a focal animal was given a choice between pheromones from a conspecific and a choice chamber containing untreated water. Females did not show a preference, both when male and when female stimuli were presented. On the contrary, males preferred the odor of a female over untreated water, suggesting that males actively search for females. The strength of preference was positively correlated with the body size difference between the female and the focal male, indicating that males prefer to mate with larger females. Female fecundity is positively correlated with female size in E. orbicularis, which may account for male choosiness. No overall preference for the stimulus animal was observed when males were presented cues from another male. However, the strength of preference was negatively correlated with the difference in body size. Males avoided large males, but oriented towards smaller stimulus males. This reflects that males form dominance hierarchies, where large males aggressively attack smaller ones. Far-range chemical communication probably enables males to minimize the risk of costly aggressive interactions. This is, to our knowledge, the first study on the role of chemical cues for inter-and intrasexual communication in the European pond turtle Y1 - 2006 UR - http://www.bibliothek.uni-regensburg.de/ezeit/?2007939 U6 - https://doi.org/10.1163/156853906776759510 SN - 0005-7959 ER - TY - JOUR A1 - Halamek, Jan A1 - Teller, Carsten A1 - Makower, Alexander A1 - Fournier, Didier A1 - Scheller, Frieder W. T1 - EQCN-based cholinesterase biosensors N2 - The binding of acetylcholinesterase (AChE) to a propidium-modified piezoelectric quartz crystal and its surface enzymatic activity have been investigated. Propidium binds to a site remote to the active center of AChE - the peripheral anionic site (PAS) - which is located on the rim of the gorge to the active site. The gold electrodes of the quartz crystal were first modified with 11-mercaptoundecanoic acid to which propidium was coupled. AChE binding was monitored by a quartz crystal nanobalance (QCN), followed by amperometric activity evaluation of the AChE loaded on the sensor. Interestingly, the binding is strong but does not inhibit AChE. However, an excess of propidium in solution inhibits the immobilized enzyme. The surface enzymatic activities observed depend on the amount of enzyme and differ according to the type and species, i.e. number of enzyme subunits (Electrophorus electricus tetrameric, Drosophila melanogaster mono- and dimeric form - DmAChE). The operational stability and regeneration, effect of propidium in solution and detection limit for substrate for various AChEs were investigated amperometrically. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/00134686 U6 - https://doi.org/10.1016/j.electacta.2006.03.047 SN - 0013-4686 ER - TY - JOUR A1 - Kummer, Volker A1 - Hanelt, Dorothea A1 - Hanelt, Peter A1 - Jage, Horst A1 - John, Heino A1 - Richter, Heidrun A1 - Richter, Udo A1 - Schultz, Burkhard T1 - Phyllactinia hippophaës (Erysiphales) rediscovered in Germany N2 - The Erysiphales species Phyllactinia hippophaës Thuem. ex S. Blumer was found for the fi rst time on cultivated Sea Buckthorn (Hippophaë rhamnoides L.) near Großkayna (Saxony-Anhalt) in October 2009. This fungus was considered to be extinct in Germany. Intensive searching in Saxony-Anhalt and the Potsdam area (Brandenburg) yielded many additional records, most of them from former brown coal mining areas or in Sea Buckthorn plantations. Y1 - 2010 SN - 1641-8180 ER - TY - JOUR A1 - Michalski, S A1 - Gautschi, B A1 - Burkart, Michael A1 - Durka, Walter T1 - Isolation and characterization of microsatellite loci in the rush Juncus atratus (Juncaceae) Y1 - 2006 ER - TY - JOUR A1 - Raynaud, F A1 - Jond-Necand, C A1 - Marcilhac, Anne A1 - Fürst, Dieter Oswald A1 - Benyamin, Yves T1 - Calpain 1-gamma filamin interaction in muscle cells :a possible in situ regulation by PKC-alpha Y1 - 2006 ER - TY - JOUR A1 - Hille, Carsten A1 - Walz, Bernd T1 - Dopamine-induced graded intracellular Ca2+ elevation via the Na+-Ca2+ exchanger operating in the Ca2+-entry mode in cockroach salivary ducts N2 - Stimulation with the neurotransmitter dopamine causes an amplitude-modulated increase in the intracellular Ca2+ concentration ([Ca2+](i)) in epithelial cells of the ducts of cockroach salivary glands. This is completely attributable to a Ca2+ influx from the extracellular space. Additionally, dopamine induces a massive [Na+](i) elevation via the Na+- K+-2Cl(-) cotransporter (NKCC). We have reasoned that Ca2+-entry is mediated by the Na+-Ca2+ exchanger (NCE) operating in the Ca2+-entry mode. To test this hypothesis, [Ca2+](i) and [Na+](i) were measured by using the fluorescent dyes Fura- 2, Fluo-3, and SBFI. Inhibition of Na+-entry from the extracellular space by removal of extracellular Na+ or inhibition of the NKCC by 10 mu M bumetanide did not influence resting [Ca2+]i but completely abolished the dopamine-induced [Ca2+](i) elevation. Simultaneous recordings of [Ca2+](i) and [Na+](i) revealed that the dopamine-induced [Na+](i) elevation preceded the [Ca2+](i) elevation. During dopamine stimulation, the generation of an outward Na+ concentration gradient by removal of extracellular Na+ boosted the [Ca2+](i) elevation. Furthermore, prolonging the dopamine-induced [Na+](i) rise by blocking the Na+/K+-ATPase reduced the recovery from [Ca2+](i) elevation. These results indicate that dopamine induces a massive NKCC-mediated elevation in [Na+](i), which reverses the NCE activity into the reverse mode causing a graded [Ca2+](i) elevation in the duct cells. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/01434160 U6 - https://doi.org/10.1016/j.ceca.2005.11.006 SN - 0143-4160 ER - TY - JOUR A1 - Heinken, Thilo A1 - Schmidt, Marcus A1 - von Oheimb, Goddert A1 - Kriebitzsch, Wolf-Ulrich A1 - Ellenberg, Hermann T1 - Soil seed banks near rubbing trees indicate dispersal of plant species into forests by wild boar N2 - Current knowledge about processes that generate long-distance dispersal of plants is still limited despite its importance for persistence of populations and colonization of new potential habitats. Today wild Large mammals are presumed to be important vectors for long-distance transport of diaspores within and between European temperate forest patches, and in particular wild boars recently came into focus. Here we use a specific habit of wild boar, i.e. wallowing in mud and subsequent rubbing against trees, to evaluate epizoochorous dispersal of vascular plant diaspores. We present soil seed bank data from 27 rubbing trees versus 27 control trees from seven forest areas in Germany. The mean number of viable seeds and the plant species number were higher in soil samples near rubbing trees compared with control trees. Ten of the 20 most frequent species were more frequent, and many species exclusively appeared in the soil samples near rubbing trees. The large number of plant species and seeds - more than 1000 per tree - in the soils near rubbing trees is difficult to explain unless the majority were dispersed by wild boar. Hooked and bristly diaspores, i.e. those adapted to epizoochory, were more frequent; however, many species with unspecialized diaspores occurred exclusively near rubbing trees. As opposed to plant species closely tied to forests species which occur both in forest and open vegetation and non-forest species were more frequent near rubbing trees compared with controls. These findings are consistent with previous studies on diaspore loads in the coats and hooves of shot wild boars. However, our method allows to identify the transport of diaspores from the open landscape into forest stands, where they might especially emerge after disturbance, and a clustered distribution of epizoochorically dispersed seeds. Moreover, accumulation of seeds of wetness indicators near rubbing trees demonstrates directed dispersal of plant species inhabiting wet places among remote wallows. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/14391791 U6 - https://doi.org/10.1016/j.baae.2005.04.006 SN - 1439-1791 ER - TY - JOUR A1 - Wronski, Torsten A1 - Apio, Ann A1 - Plath, Martin T1 - The communicatory significance of localised defecation sites in bushbuck (Tragelaphus scriptus) N2 - Like several other mammals, bushbuck (Tragelaphus scriptus) deposit faeces in specific localised defecation sites (LDS). A previous study has ruled out a function of LDS in the context of parasite avoidance. In this study, we investigated the communicatory significance of LDS. In a free ranging population, we tested whether LDS serve to demarcate home ranges, and/or if LDS are used for communication in a non-territorial context. In both sexes, LDS increased significantly in number towards the periphery of individual home ranges. However, the distribution pattern of LDS, as revealed by a nearest-neighbour mapping technique (nearest distances between LDS), did not support the idea that LDS serve home range/territory-demarcation because LDS did not follow a pattern of minimal nearest-neighbour distances along the margins of home ranges. We found females to urinate more often in LDS than males. Notably, information transfer was most frequent between sending (urinating or defecating) females and receiving/responding males (urination or defecation at places where a female had previously signalled). Our results suggest that LDS mainly serve for inter- sexual communication in bushbuck Y1 - 2006 UR - http://www.springerlink.com/content/517tm6115561t421/ U6 - https://doi.org/10.1007/s00265-006-0174-4 ER - TY - JOUR A1 - Herzschuh, Ulrike A1 - Kürschner, Harald A1 - Battarbee, Rick A1 - Holmes, Jonathan T1 - Desert plant pollen production and a 160-year record of vegetation and climate change on the Alashan Plateau, NW China N2 - Recent and subfossil pollen spectra from the Alashan Plateau are presented in order to provide information on desert plant representation and on recent changes in vegetation and climate in this remote area in northern China. The desert vegetation composition is faithfully represented by the surface pollen spectra. The comparison of the desert plant species to the related pollen taxa yielded the following sequence from over-representation to under- representation: Chenopodiaceae, Artemisia, Ephedra fragilis-type s.l., Reaumuria, Nitraria and Calligonum. A 72 cm long sediment record from a small hydrologically-closed inter-dune lake (SE Badan Jilin Sand Sea, southern Alashan Plateau) covering the past similar to 160 years (dated by(137)Cs) was analysed palynologically. Intervals of denser Artemisia coverage on the sand dunes around the lake, indicating wetter climate, occurred from the mid-1850s to the mid-1870s, during the first two decades of the 20th century and from the late 1930s to the beginning of the 1960s Y1 - 2006 UR - http://www.springerlink.com/content/107470 U6 - https://doi.org/10.1007/s00334-005-0031-9 SN - 0939-6314 ER - TY - JOUR A1 - Dames, Petra A1 - Zimmermann, Bernhard A1 - Schmidt, Ruth A1 - Rein, Julia A1 - Voss, Martin A1 - Schewe, Bettina A1 - Walz, Bernd A1 - Baumann, Otto T1 - cAMP regulates plasma membrane vacuolar-type H+-ATPase assembly and activity in blowfly salivary glands N2 - Reversible assembly of the V0V1 holoenzyme from V-0 and V-1 subcomplexes is a widely used mechanism for regulation of vacuolar-type H+-ATPases (V-ATPases) in animal cells. in the blowfly (Calliphora vicina) salivary gland, V- ATPase is located in the apical membrane of the secretory cells and energizes the secretion of a KCl-rich saliva in response to the hormone serotonin. We have examined whether the CAMP pathway, known to be activated by serotonin, controls V-ATPase assembly and activity. Fluorescence measurements of pH changes at the luminal surface of isolated glands demonstrate that CAMP, Sp-adenosine-3',5'-cyclic monophosphorothioate, or forskolin, similar to serotonin, cause V-ATPase-dependent luminal acidification. In addition, V-ATPase-dependent ATP hydrolysis increases upon treatment with these agents. Immunofluorescence microscopy and pelleting assays have demonstrated further that V, components become translocated from the cytoplasm to the apical membrane and V-ATPase holoenzymes are assembled at the apical membrane during conditions that increase intracellular cAMP. Because these actions occur without a change in cytosolic Ca2+, our findings suggest that the cAMP pathway mediates the reversible assembly and activation of V-ATPase molecules at the apical membrane upon hormonal stimulus Y1 - 2006 UR - http://www.pnas.org/ U6 - https://doi.org/10.1073/pnas.0600011103 SN - 0027-8424 ER - TY - JOUR A1 - Huber, Veronika A1 - Gaedke, Ursula T1 - The role of predation for seasonal variability patterns among phytoplankton and ciliates N2 - Investigating the mechanisms which underlie the biomass fluctuations of populations and communities is important to better understand the processes which buffer community biomass in a variable environment. Based on long- term data of plankton biomass in Lake Constance (Bodensee), this study aims at explaining the different degree of synchrony among populations observed within two freshwater plankton groups, phytoplankton and ciliates. Established measures of temporal variability such as the variance ratio and cross-correlation coefficients were combined with first- order autoregressive models that allow estimating species interactions from time-series data. We found that predation was an important driver of the observed seasonal variability patterns in phytoplankton and ciliates, and that competitive interactions only played a subordinate role. In Lake Constance copepods and cladocerans, two major invertebrate predator groups, focus their grazing pressure at different times of the season. Model results suggested that compensatory dynamics detected in phytoplankton originate from the differential vulnerability of species to either one of these two predator groups. For ciliates model results advocated that synchrony among species occurs because ciliates tend to be vulnerable to both predator groups. Our findings underline the necessity of extending studies of community variability to multiple trophic levels because accounting for predator-prey interactions may often be more important than accounting for competitive interactions at one trophic level Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0030-1299 U6 - https://doi.org/10.1111/j.2006.0030-1299.14753.x SN - 0030-1299 ER - TY - JOUR A1 - Wood, C. C. A1 - Poree, Fabien A1 - Dreyer, Ingo A1 - Koehler, G. J. A1 - Udvardi, M. K. T1 - Mechanisms of ammonium transport, accumulation, and retention in ooyctes and yeast cells expressing Arabidopsis AtAMT1; 1 N2 - Ammonium is a primary source of N for plants, so knowing how it is transported, stored, and assimilated in plant cells is important for rational approaches to optimise N-use in agriculture. Electrophysiological studies of Arabidopsis AtAMT1;1 expressed in oocytes revealed passive, Delta psi-driven transport of NH4+ through this protein. Expression of AtAMT1;1 in a novel yeast mutant defective in endogenous ammonium transport and vacuolar acidification supported the above mechanism for AtAMT1;1 and revealed a central role for acid vacuoles in storage and retention of ammonia in cells. These results highlight the mechanistic differences between plant AMT proteins and related transporters in bacteria and animal cells, and suggest novel strategies to enhance nitrogen use efficiency in agriculture. (c) 2006 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved Y1 - 2006 UR - http://www.sciencedirect.com/science/article/pii/S0014579306007332 U6 - https://doi.org/10.1016/j.febslet.2006.06.026 ER - TY - JOUR A1 - Beissenhirtz, Moritz Karl A1 - Scheller, Frieder W. A1 - Viezzoli, Maria Silvia A1 - Lisdat, Fred T1 - Engineered superoxide dismutase monomers for superoxide biosensor applications N2 - Because of its high reaction rate and specificity, the enzyme superoxide dismutase (SOD) offers great potential for the sensitive quantification of superoxide radicals in electrochemical biosensors. In this work, monomeric mutants of human Cu,Zn-SOD were engineered to contain one or two additional cysteine residues, which could be used to bind the protein to gold surfaces, thus making the use of promotor molecules unnecessary. Six mutants were successfully designed, expressed, and purified. All mutants bound directly to unmodified gold surfaces via the sulfur of the cysteine residues and showed a quasireversible, direct electron transfer to the electrode. Thermodynamic and kinetic parameters of the electron transfer were characterized and showed only slight variations between the individual mutants. For one of the mutants, the interaction with the superoxide radical was studied in more detail. For both partial reactions of the dismutation, an interaction between protein and radical could be shown. In an amperometric biosensorial approach, the SOD-mutant electrode was successfully applied for the detection of superoxide radicals. In the oxidation region, the electrode surpassed the sensitivity of the commonly used cytochrome c electrodes by similar to 1 order of magnitude while not being limited by interferences, but the electrode did not fully reach the sensitivity of dimeric Cu,Zn-SOD immobilized on MPA-modified gold Y1 - 2006 UR - http://pubs.acs.org/journal/ancham U6 - https://doi.org/10.1021/Ac051465g SN - 0003-2700 ER - TY - JOUR A1 - Wronski, Torsten A1 - Wacher, Timothy A1 - Hammond, Robert L. A1 - Winney, Bruce A1 - Hundertmark, Kris J. A1 - Blacket, Mark J. A1 - Mohammed, Osama B. A1 - Flores, Benito A1 - Omer, Sawsan A. A1 - Macasero, William A1 - Plath, Martin A1 - Tiedemann, Ralph A1 - Bleidorn, Christoph T1 - Two reciprocally monophyletic mtDNA lineages elucidate the taxonomic status of Mountain gazelles (Gazella gazella) N2 - Mountain gazelles (Gazella gazella) rank among the most critically endangered mammals on the Arabian Peninsula. Past conservation efforts have been plagued by confusion about the phylogenetic relationship among various 'phenotypically discernable' populations, and even the question of species boundaries was far from being certain. This lack of knowledge has had a direct impact on conservation measures, especially ex situ breeding programmes, hampering the assignment of captive stocks to potential conservation units. Here, we provide a phylogenetic framework, based on the analysis of mtDNA sequences (360 bp cytochrome b and 213 bp Control Region) of 126 individuals collected from the wild throughout the Arabian Peninsula and from captive stocks. Our analyses revealed two reciprocally monophyletic genetic lineages within the presumed species Gazella gazella: one 'northern clade' on the Golan Heights (Israel/Syrian border) and one genetically diverse larger clade from the rest of the Arabian Peninsula including the Arava Valley (Negev, Israel). Applying the Strict Phylogenetic Species Concept (sensu Mishler & Theriot, 2000) allows assigning species status to these two major clades. Y1 - 2010 UR - http://www.informaworld.com/smpp/title~content=t913521959~db=all U6 - https://doi.org/10.1080/14772001003613192 SN - 1477-2000 ER - TY - JOUR A1 - Neumann, Meina A1 - Schulte, Marc A1 - Jünemann, Nora A1 - Stöcklein, Walter F. M. A1 - Leimkühler, Silke T1 - Rhodobacter capsulatus XdhC is involved in molybdenum cofactor binding and insertion into xanthine dehydrogenase N2 - Rhodobacter capsulatus xanthine dehydrogenase (XDH) is a cytoplasmic enzyme with an (alpha beta) 2 heterodimeric structure that is highly identical to homodimeric eukaryotic xanthine oxidoreductases. The crystal structure revealed that the molybdenum cofactor (Moco) is deeply buried within the protein. A protein involved in Moco insertion and XDH maturation has been identified, which was designated XdhC. XdhC was shown to be essential for the production of active XDH but is not a subunit of the purified enzyme. Here we describe the purification of XdhC and the detailed characterization of its role for XDH maturation. We could show that XdhC binds Moco in stoichiometric amounts, which subsequently can be inserted into Moco-free apo-XDH. A specific interaction between XdhC and XdhB was identified. We show that XdhC is required for the stabilization of the sulfurated form of Moco present in enzymes of the xanthine oxidase family. Our findings imply that enzyme-specific proteins exist for the biogenesis of molybdoenzymes, coordinating Moco binding and insertion into their respective target proteins. So far, the requirement of such proteins for molybdoenzyme maturation has been described only for prokaryotes Y1 - 2006 UR - http://www.jbc.org/ U6 - https://doi.org/10.1074/jbc.M601617200 ER - TY - JOUR A1 - Feng, Xiao-Li A1 - Ni, Wei-Min A1 - Elge, Stephan A1 - Müller-Röber, Bernd A1 - Xu, Zhi-Hong A1 - Xue, Hong-Wei T1 - Auxin flow in anther filaments is critical for pollen grain development through regulating pollen mitosis N2 - It was well known that auxin is critical for anther/pollen grain development, however, the clear distribution and detailed effects of auxin during floral development are still unclear. We have shown here that, through analyzing GUS activities of Arabidopsis lines harboring auxin response elements DR5-GUS, auxin was mainly accumulated in the anther during flower stages 10-12. Further studies employing the indoleacetic acid-lysine synthetase (iaaL) coding gene from Pseudomonas syringae subsp. savastanoi under control of the promoter region of Arabidopsis phosphatidylinositol monophosphate 5-kinase 1 gene, which conducts the anther filament-specific expression, showed that block of auxin flow of filaments resulted in shortened filaments and significantly defective pollen grains. Similar phenotype was observed in tobacco plants transformed with the same construct, confirming the effects of auxin flow in filaments on anther development. Detailed studies further revealed that the meiosis process of pollen grain was normal while the mitosis at later stage was significantly defected, indicating the effects of auxin flow in filaments on pollen grain mitosis process. Analysis employing [C-14]IAA, as well as the observation on the expression of AtPIN1, coding for auxin efflux carrier, demonstrated the presence of polar auxin transport in anther filaments and pollen grains Y1 - 2006 UR - http://www.springerlink.com/content/100330 U6 - https://doi.org/10.1007/s11103-006-0005-z SN - 0167-4412 ER - TY - JOUR A1 - Mikhailyuk, Igor K. A1 - Knox, Peter P. A1 - Paschenko, Vladimir Z. A1 - Razjivin, Andrej P. A1 - Lokstein, Heiko T1 - Analysis of absorption spectra of purple bacterial reaction centers in the near infrared region by higher order derivative spectroscopy N2 - Reaction centers (RCs) of purple bacteria are uniquely suited objects to study the mechanisms of the photosynthetic conversion of light energy into chemical energy. A recently introduced method of higher order derivative spectroscopy [I.K. Mikhailyuk, H. Lokstein, A.P. Razjivin, A method of spectral subband decomposition by simultaneous fitting the initial spectrum and a set of its derivatives, J. Biochem. Biophys. Methods 63 (2005) 10-23] was used to analyze the NIR absorption spectra of RC preparations from Rhodobacter (R.) sphaeroides strain 2R and Blastochloris (B.) viridis strain KH, containing bacteriochlorophyll (BChl) a and b, respectively. Q(y) bands of individual RC porphyrin components (BChls and bacteriopheophytins, BPheo) were identified. The results indicate that the upper exciton level Py+ of the photo-active BChl dimer in RCs of R. sphaeroides has an absorption maximum of 810nm. The blue shift of a complex integral band at approximately 800nm upon oxidation of the RC is caused primarily by bleaching of Py+, rather than by an electrochromic shift of the absorption band(s) of the monomeric BChls. Likewise, the disappearance of a band peaking at 842 nm upon oxidation of RCs from B. viridis indicates that this band has to be assigned to Py+, A blue shift of an absorption band at approximately 830nm upon oxidation of RCs of B. viridis is also essentially caused by the disappearance of Py+, rather than by an electrochromic shift of the absorption bands of monomeric BChls. Absorption maxima of the monomeric BCHls, B-B and B-A are at 802 and 797nm, respectively, in RCs of R. sphaeroides at room temperature. BPheo co-factors H-B and HA peak at 748 and 758 nm, respectively, at room temperature. For B. viridis RCs the spectral positions of HB and HA were found to be 796 and 816nm, respectively, at room temperature. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03014622 U6 - https://doi.org/10.1016/j.bpc.2006.02.002 ER - TY - JOUR A1 - Wronski, Torsten A1 - Tiedemann, Ralph A1 - Apio, Ann A1 - Plath, Martin T1 - Cover, food, competitors and individual densities within bushbuck Tragelaphus scriptus female clan home ranges N2 - We examined factors predicting female densities within the common home ranges of related females ("clans") in bushbuck Tragelaphus scriptus Pallas, 1776. In this species, each female forms an individual home range, but the home ranges of matrilineal clan members strongly overlap. We found female densities to increase in areas with high canopy cover. Moreover, individual home range sizes tended to decrease with increasing cover. Food plant availability and intruder pressure by two heterospecific competitors did not significantly affect female densities. Apparently, canopy cover is the major limited resource in this species. A possible explanation is that both adult bushbuck and - even more markedly - fawns hide from predators in dense vegetation, in particular in thicket clumps and coalescences. The study shows an effect of habitat properties (eg sufficient canopy cover) on a within-population level in bushbuck, where female densities differ even among proximate clan areas Y1 - 2006 ER - TY - JOUR A1 - Morgenthal, Katja A1 - Weckwerth, Wolfram A1 - Steuer, Ralf T1 - Metabolomic networks in plants : transitions from pattern recognition to biological interpretation N2 - Nowadays techniques for non-targeted metabolite profiling allow for the generation of huge amounts of relevant data essential for the construction of dynamic metabolomic networks. Thus, metabolomics, besides transcriptomics or proteomics, provides a major tool for the characterization of postgenomic processes. In this work, we introduce comparative correlation analysis as a complementary approach to characterize the physiological states of various organs of diverse plant species with focus on specific participation of metabolites in different reaction networks. The correlations observed are induced by diminutive fluctuations in environmental conditions, which propagate through the system and induce specific patterns depending on the genomic background. In order to examine this hypothesis, numeric examples of such fluctuations are computed and compared with experimentally obtained metabolite data. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03032647 U6 - https://doi.org/10.1016/j.biosystems.2005.05.017 ER - TY - JOUR A1 - Plath, Martin A1 - Seggel, Uta A1 - Burmeister, Heike A1 - Heubel, Katja U. A1 - Schlupp, Ingo T1 - Choosy males from the underground : male mating preferences in surface- and cave-dwelling Atlantic mollies (Poecilia mexicana) N2 - Atlantic mollies (Poecilia mexicana) inhabit a variety of surface habitats, but they also occur in a sulfur cave in southern Mexico. We examined male mate choice relative to female body size in the cave population and in the most closely related surface-dwelling population from a nearby river. Males from both populations were either light- or dark-reared and could choose between two differently sized females either on the basis of visual cues in light or on the basis of solely nonvisual cues in darkness. Sexual preferences were estimated from the degree of association. Cave molly males always showed a preference for the larger female, both in light and in darkness. Among the surface males, only light-reared males showed a preference in the visual cues test, but not in darkness. In a control experiment, we demonstrated that male association preferences directly translate into actual mating preferences. Apparently, using visual cues for mate choice is the ancestral state in this system, and using nonvisual cues has evolved as a novel trait in the cave population. We discuss the evolution of nonvisual male mate choice in the context of changed environmental conditions, namely the absence of light, hypoxia, and toxic hydrogen sulfide in the cave Y1 - 2006 UR - http://www.springerlink.com/content/100479 U6 - https://doi.org/10.1007/s00114-005-0072-z ER - TY - JOUR A1 - Stalz, Holger A1 - Roth, Udo A1 - Schleuder, Detlev A1 - Macht, Marcus A1 - Haebel, Sophie A1 - Strupat, Kerstin A1 - Peter-Katalinic, Jasna A1 - Hanisch, Franz-Georg T1 - The Geodia cydonium galectin exhibits prototype and chimera-type characteristics and a unique sequence polymorphism within its carbohydrate recognition domain N2 - The ancestral galectin from the sponge Geodia cydonium (GCG) is classified on a structural basis to the prototype subfamily, whereas its carbohydrate-binding specificity is related to that of the mammalian chimera-type galectin-3. This dual coordination reveals GCG as a potential precursor of the later evolved galectin subfamilies, which is reflected in the primary structure of the protein. This study provides evidence that GCG is the LECT1 gene product, while neither a previously described LECT2 gene nor a functional LECT2 gene product was found in the specimen under investigation. The electrophoretically separated protein isomers with apparent molecular masses of 13, 15, and 16 kDa correspond to variants of the LECT1 protein-exhibiting peptide sequence polymorphisms that concern critical positions of the carbohydrate recognition domain (13 kDa: Leu51, Asn55, His130, Gly137; 15 kDa: Ser51, Asn55, Asn130, Gly137; 16 kDa: Ser51, Tyr55, Asn130, Glu137). Four residues, highly conserved in the galectin family, are substituted. None of the residues claimed to be involved in interactions with GalNAc alpha 1-3 moieties at an extended binding subsite of galectin-3 was identified in the corresponding positions of GCG. Apparently, the substitutions do not confer distinct binding characteristics to the GCG variants as evidenced by binding studies with a recombinantly expressed 15-kDa isoform. The natural isoforms as well as the recombinant 15-kDa isoform oligomerize by the formation of non-covalent heteromeric or homomeric complexes. A phosphorylation of the galectin was confirmed neither by mass spectrometry nor by alkaline phosphatase treatment combined with isoelectric focusing Y1 - 2006 UR - http://glycob.oxfordjournals.org/content/16/5/402.full U6 - https://doi.org/10.1093/glycob/cwj086 ER - TY - JOUR A1 - Sato, A A1 - Gambale, Franco A1 - Dreyer, Ingo A1 - Uozumi, N T1 - Posttranslational inodification affects K+ current of plant K+ channel Y1 - 2006 ER - TY - JOUR A1 - Schulz, Tim Julius A1 - Thierbach, Renè A1 - Voigt, Anja A1 - Drewes, Gunnar A1 - Mietzner, Brun A1 - Steinberg, Pablo A1 - Pfeiffer, Andreas F. H. A1 - Ristow, Michael T1 - Induction of oxidative metabolism by mitochondrial frataxin inhibits cancer growth : Otto Warburg revisited N2 - More than 80 years ago Otto Warburg suggested that cancer might be caused by a decrease in mitochondrial energy metabolism paralleled by an increase in glycolytic flux. In later years, it was shown that cancer cells exhibit multiple alterations in mitochondrial content, structure, function, and activity. We have stably overexpressed the Friedreich ataxia-associated protein frataxin in several colon cancer cell lines. These cells have increased oxidative metabolism, as shown by concurrent increases in aconitase activity, mitochondrial membrane potential, cellular respiration, and ATP content. Consistent with Warburg's hypothesis, we found that frataxin-overexpressing cells also have decreased growth rates and increased population doubling times, show inhibited colony formation capacity in soft agar assays, and exhibit a reduced capacity for tumor formation when injected into nude mice. Furthermore, overexpression of frataxin leads to an increased phosphorylation of the tumor suppressor p38 mitogen-activated protein kinase, as well as decreased phosphorylation of extracellular signal-regulated kinase. Taken together, these results support the view that an increase in oxidative metabolism induced by mitochondrial frataxin may inhibit cancer growth in mammals Y1 - 2006 UR - http://www.jbc.org/content/281/2/977.full.pdf+html U6 - https://doi.org/10.1074/jbc.M511064200 ER - TY - JOUR A1 - Wronski, Torsten A1 - Apio, Ann A1 - Wanker, R A1 - Plath, Martin T1 - Behavioural repertoire of the bushbuck (Tragelaphus scriptus): agonistic interactions, mating behaviour and parent-offspring relations N2 - A free-ranging bushbuck (Tragelaphus scriptus) population was observed over a period of 3 years, thereby enabling a detailed description of the behavioural repertoire of this widespread but barely investigated solitary African antelope species. Agonistic and submissive behaviour patterns are described, among them several hitherto un- described behaviour patterns - such as "escorting", where territorial males guide intruders to the periphery of their territory - and "push-up position", an extreme form of submissive behaviour. Furthermore, we report on behaviour patterns of males and females during mating as well as on behaviour patterns of parents directed towards their offspring. Again, we describe a hitherto unknown behaviour: the protection of calves by adult males, which may be a socio-positive behaviour directed towards their offspring led by kin selection Y1 - 2006 UR - http://www.springerlink.com/content/h4v41315l1717v87/ U6 - https://doi.org/10.1007/s10164-005-0186-y ER - TY - JOUR A1 - Yuryev, Ruslan A1 - Kasche, Volker A1 - Ignatova, Zoya A1 - Galunsky, Boris T1 - Improved A. faecalis penicillin amidase mutant retains the thermodynamic and pH stability of the wild type enzyme N2 - Penicillin amidase from Alacaligenes faecalis is an attractive biocatalyst for hydrolysis of penicillin G for production of 6-aminopenicillanic acid, which is used in the synthesis of semi-synthetic beta-lactam antibiotics. Recently a mutant of this enzyme with extended C-terminus of the A-chain comprising parts of the connecting linker peptide was constructed. Its turnover number for the hydrolysis of penicillin G was 140 s(-1), about twice of the value for the wild-type enzyme (80 s(-1)). At the same time the specificity constant was improved about three-fold. The wild- type and the mutant enzymes showed similar pH stability suggesting that the linker peptide fragment covalently attached to the A-chain does not alter the electrostatic interactions in the protein core. Although the global stability of A. faecalis wild-type enzyme and the T206GS213G variant does not differ, the presence of the linker fragment stabilizes the domains interface, as evidenced by the monophasic transition of the mutant enzyme from folded to unfolded state during urea-induced denaturation. The high stability and activity of the mutant enzyme provides a rationale to use it as a biocatalyst in the industrial processes, where the enzyme must be more robust to fluctuations in the operational conditions. Y1 - 2010 UR - http://springerlink.metapress.com/content/1573-4943/ U6 - https://doi.org/10.1007/s10930-010-9238-4 SN - 1572-3887 ER - TY - JOUR A1 - Liu, Songqin A1 - Wollenberger, Ursula A1 - Katterle, Martin A1 - Scheller, Frieder W. T1 - Ferroceneboronic acid-based amperometric biosensor for glycated hemoglobin N2 - An amperometric biosensor for the determination of glycated hemoglobin in human whole blood is proposed. The principle is based on the electrochemical measurement of ferroceneboronic acid (FcBA) that has been specifically bound to the glycated N-terminus. Hemoglobin is immobilized on a zirconium dioxide nanoparticle modified pyrolytic graphite electrode (PGE) in the presence of didodecyldimethylammonium bromide (DDAB). The incubation of this sensor in FcBA solution leads to the formation of an FcBA-modified surface due to the affinity interaction between boronate and the glycated sites of the hemoglobin. The binding of FcBA results in well-defined redox peaks with an E-0' of 0.299 V versus Ag/AgCl (1 M KCl). The square wave voltammetric response of the bound FcBA reflects the amount of glycated hemoglobin at the surface. This signal increases linearily with the degree of glycated hemoglobin from 6.8 to 14.0% of total immobilized hemoglobin. The scheme was applied to the determination of the fraction of glycated hemoglobin in whole blood samples. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/09254005 U6 - https://doi.org/10.1016/j.snb.2005.07.011 SN - 0925-4005 ER - TY - JOUR A1 - Reineking, Björn A1 - Schröder-Esselbach, Boris T1 - Constrain to perform : regularization of habitat models N2 - Predictive habitat models are an important tool for ecological research and conservation. A major cause of unreliable models is excessive model complexity, and regularization methods aim to improve the predictive performance by adequately constraining model complexity. We compare three regularization methods for logistic regression: variable selection, lasso, and ridge. They differ in the way model complexity is measured: variable selection uses the number of estimated parameters, the lasso uses the sum of the absolute values of the parameter estimates, and the ridge uses the sum of the squared values of the parameter estimates. We performed a simulation study with environmental data of a real landscape and artificial species occupancy data. We investigated the effect of three factors on relative model performance: (1) the number of parameters (16, 10, 6, 2) in the 'true' model that determined the distribution of the artificial species, (2) the prevalence, i.e. the proportion of sites occupied by the species, and (3) the sample size (measured in events per variable, EPV). Regularization improved model discrimination and calibration. However, no regularization method performed best under all circumstances: the ridge generally performed best in the 16-parameter scenario. The lasso generally performed best in the 10-parameter scenario. Variable selection with AIC was best at large sample sizes (EPV >= 10) when less than half of the variables influenced the species distribution. However, at low sample sizes (EPV < 10), ridge and lasso always performed best, regardless of the parameter scenario or prevalence. Overall, calibration was best in ridge models. Other methods showed overconfidence, particularly at low sample sizes. The percentage of correctly identified models was low for both lasso and variable selection. Variable selection should be used with caution. Although it can produce the best performing models under certain conditions, these situations are difficult to infer from the data. Ridge and lasso are risk-averse model strategies that can be expected to perform well under a wide range of underlying species-habitat relationships, particularly at small sample sizes. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/03043800 U6 - https://doi.org/10.1016/j.ecolmodel.2005.10.003 SN - 0304-3800 ER - TY - JOUR A1 - Rossmanith, Eva A1 - Grimm, Volker A1 - Blaum, Niels A1 - Jeltsch, Florian T1 - Behavioural flexibility in the mating system buffers population extinction: lessons from the Lesser Spotted Woodpecker (Picoides minor) N2 - In most stochastic models addressing the persistence of small populations, environmental noise is included by imposing a synchronized effect of the environment on all individuals. However, buffer mechanisms are likely to exist that may counteract this synchronization to some degree. We have studied whether the flexibility in the mating system, which has been observed in some bird species, is a potential mechanism counteracting the synchronization of environmental fluctuations. Our study organism is the lesser spotted woodpecker Picoides minor (Linnaeus), a generally monogamous species. However, facultative polyandry, where one female mates with two males with separate nests, was observed in years with male-biased sex ratio. We constructed an individual-based model from data and observations of a population in Taunus, Germany. We tested the impact of three behavioural scenarios on population persistence: (1) strict monogamy; (2) polyandry without costs; and (3) polyandry assuming costs in terms of lower survival and reproductive success for secondary males. We assumed that polyandry occurs only in years with male-biased sex ratio and only for females with favourable breeding conditions. Even low rates of polyandry had a strong positive effect on population persistence. The increase of persistence with carrying capacity was slower in the monogamous scenario, indicating strong environmental noise. In the polyandrous scenarios, the increase of persistence was stronger, indicating a buffer mechanism. In the polyandrous scenarios, populations had a higher mean population size, a lower variation in number of individuals, and recovered faster after a population breakdown. Presuming a realistic polyandry rate and costs for polyandry, there was still a strong effect of polyandry on persistence. The results show that polyandry and in general flexibility in mating systems is a buffer mechanism that can significantly reduce the impact of environmental and demographic noise in small populations. Consequently, we suggest that even behaviour that seems to be exceptional should be considered explicitly when predicting the persistence of populations Y1 - 2006 U6 - https://doi.org/10.1111/j.1365-2656.2006.01074.x ER - TY - JOUR A1 - Buscaglia, Marco A1 - Schuler, Benjamin A1 - Lapidus, Lisa J. A1 - Eaton, Wiliam A. A1 - Hofrichter, James T1 - Kinetics of intramolecular contact formation in a denatured protein N2 - Quenching of the triplet state of tryptophan by cysteine has provided a new tool for measuring the rate of forming a specific intramolecular contact in disordered polypeptides. Here, we use this technique to investigate contact formation in the denatured state of CspTm, a small cold-shock protein from Thermotoga maritima, engineered to contain a single tryptophan residue (W29) and a single cysteine residue at the C terminus (C67). At all concentrations of denaturant, the decay rate of the W29 triplet of the unfolded protein is more than tenfold faster than the rate observed for the native protein (not, vert, similar104 s;1). Experiments on the unfolded protein without the added C- terminal cysteine residue show that this faster rate results entirely from contact quenching by C67. The quenching rate in the unfolded state by C67 increases at concentrations of denaturant that favor folding, indicating a compaction of the unfolded protein as observed previously in single-molecule Foerster resonance energy transfer (FRET) experiments. Y1 - 2003 UR - http://www.sciencedirect.com/science/article/pii/S002228360300891X SN - 0022-2836 ER - TY - JOUR A1 - Moodley, Yoshan A1 - Bruford, Michael W. A1 - Bleidorn, Christoph A1 - Wronski, Torsten A1 - Apio, Ann A1 - Plath, Martin T1 - Analysis of mitochondrial DNA data reveals non-monophyly in the bushbuck (Tragelaphus scriptus) complex Y1 - 2009 UR - http://www.sciencedirect.com/science/journal/16165047 U6 - https://doi.org/10.1016/j.mambio.2008.05.003 SN - 1616-5047 ER - TY - JOUR A1 - Nagel, Birgit A1 - Warsinke, Axel T1 - Towards separation-free electrochemical affinity sensors by using antibodies, aptamers and molecularly imprinted polymers : a review Y1 - 2006 U6 - https://doi.org/10.1080/00032710600853903 ER - TY - JOUR A1 - Nitsche, Andreas A1 - Kurth, Andreas A1 - Dunkhorst, Anna A1 - Pänke, Oliver A1 - Sielaff, Hendrik A1 - Junge, Wolfgang A1 - Muth, Doreen A1 - Scheller, Frieder W. A1 - Stöcklein, Walter F. M. A1 - Pauli, Georg A1 - Kage, Andreas T1 - One-step selection of vaccinia virus binding DNA-aptamers by MonoLEX Y1 - 2007 UR - http://www.biomedcentral.com/1472-6750/7 U6 - https://doi.org/10.1186/1472-6750-7-48 ER - TY - JOUR A1 - Fettke, Jörg A1 - Chia, Tansy A1 - Eckermann, Nora A1 - Smith, Alison M. A1 - Steup, Martin T1 - A transglucosidase necessary for starch degradation and maltose metabolism in leaves at night acts on cytosolic heteroglycans (SHG) N2 - The recently characterized cytosolic transglucosidase DPE2 (EC 2.4.1.25) is essential for the cytosolic metabolism of maltose, an intermediate on the pathway by which starch is converted to sucrose at night. In in vitro assays, the enzyme utilizes glycogen as a glucosyl acceptor but the in vivo acceptor molecules remained unknown. In this communication we present evidence that DPE2 acts on the recently identified cytosolic water-soluble heteroglycans (SHG) as does the cytosolic phosphorylase (EC 2.4.1.1) isoform. By using in vitro two-step C-14 labeling assays we demonstrate that the two transferases can utilize the same acceptor sites of the SHG. Cytosolic heteroglycans from a DPE2-deficient Arabidopsis mutant were characterized. Compared with the wild type the glucose content of the heteroglycans was increased. Most of the additional glucosyl residues were found in the outer chains of SHG that are released by an endo- alpha-arabinanase (EC 3.2.1.99). Additional starch-related mutants were characterized for further analysis of the increased glucosyl content. Based on these data, the cytosolic metabolism of starch-derived carbohydrates is discussed Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=0960-7412 U6 - https://doi.org/10.1111/j.1365-313X.2006.02732.x SN - 0960-7412 ER - TY - JOUR A1 - Kapp, Andreas A1 - Beissenhirtz, Moritz Karl A1 - Geyer, F. A1 - Scheller, Frieder W. A1 - Viezzoli, Maria Silvia A1 - Lisdat, Fred T1 - Electrochemical and sensorial behaviour of SOD mutants immobilized on gold electrodes in aqueous / organic solvent mixtures Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/jhome/26571/ U6 - https://doi.org/10.1002/elan.200603620 SN - 1040-0397 ER - TY - JOUR A1 - Knösche, Rüdiger T1 - Organic sediment nutrient concentrations and their relationship with the hydrological connectivity of floodplain waters (River Havel, NE Germany) N2 - Investigations on large canalised rivers, for example the Danube, have shown that transported particulate matter, which is typically inorganic, is predominantly deposited in waters near the river's main channel. This investigation deals with the lower section of the River Havel (NE Germany), a canalised lowland river with a very flat floodplain. This river is highly polluted by nutrients from urban areas (Berlin) and a long chain of river lakes produces high concentrations of phytoplankton. Due to the high proportion of planktogenic detritus, it was hypothesised that greater quantities of nutrient-rich fine particulate organic matter (FPOM) would be deposited in floodplain waters located further from the main channel than has been reported for large rivers.The total nutrient, P-binding metal (Fe, Al, and Mn), organic and inorganic carbon (TOC, TIC) contents of the upper organic sediment layer (0 - 4 cm) were analysed in samples collected from 48 floodplain water and river sites. The sediment bulk density, calculated on the basis of dry mass content and loss on ignition, was used to characterize the waters according to the impact of the river current. The results showed that the variability of total phosphorus (TP) was best explained by the variability of total iron (TFe, R2 = 0.52). The floodplain water sediments could clearly be separated into two groups on the basis of the sediment particle size composition, and of the element ratios TOC:TP, TN:TP, primarily TFe:TP. The sediments from impounded river sections and from mouth sections of backwaters (approx. 100 - 200 m) were characterized by a high proportion particles from the 0.1 - 0.5 mm size fraction and by homogeneous, low TFe:TP, TOC:TP and TN:TP ratios. Sediments from distal sections of backwaters and of oxbow lakes tended to exhibit high element ratios with much higher variability. These results were interpreted as a spatially limited impact of the river on the floodplain water sediments. Contrary to expectation, the phosphorus bound in river seston was predominantly and very homogeneously deposited in the impounded river and mouth sections of backwaters. This implies that the inundation of the floodplain waters during spring floods seems to have no important material impact on the sediments in waters of low hydrologically connectivity with the River Havel. Y1 - 2006 ER - TY - JOUR A1 - Micheel, Burkhard T1 - Monoclonal Antibodies Y1 - 2006 SN - 978-3-540-44244-8 ER - TY - JOUR A1 - Spijkerman, Elly T1 - Is there really insufficient support for Tilman's R* concept? A comment on Miller et al Y1 - 2007 ER - TY - JOUR A1 - Gaedke, Ursula T1 - Spectral analysis unmasks synchronous and compensatory dynamics in plankton communities Y1 - 2007 ER - TY - JOUR A1 - Bell, Elanor M. A1 - Park, Tae-Gyu A1 - Pearce, Imojen A1 - Rublee, Parke A. A1 - Bolch, Christopher J. S. A1 - Hallegraeff, Gustaff M. T1 - Detection of a novel ecotype of Pfiesteria piscicida (Dinophyceae) in an Antarctic saline lake by real-time PCR Y1 - 2007 ER - TY - JOUR A1 - Higgins, Steven I. A1 - Flores, Olivier A1 - Schurr, Frank Martin T1 - Costs of persistence and the spread of competing seeders and sprouters Y1 - 2008 UR - http://www3.interscience.wiley.com/journal/118509661/home U6 - https://doi.org/10.1111/j.1365-2745.2008.01391.x SN - 0022-0477 ER - TY - JOUR A1 - Clegg, Mark R. T1 - Behavioral response as a predictor of seasonal depth distribution and vertical niche separation in freshwater phytoplanktonic flagellates Y1 - 2007 ER - TY - JOUR A1 - Dreyer, Ingo A1 - Gajdanowicz, Pawel T1 - Regulation of the gating mode of the Arabidopsis K+ channel AKT2 is important for adaptation to abiotic stress Y1 - 2009 UR - http://www.sciencedirect.com/science/journal/10956433 U6 - https://doi.org/10.1016/j.cbpa.2009.04.426 SN - 1095-6433 ER - TY - JOUR A1 - Spijkerman, Elly T1 - Phosphorus acquisition by Chlamydomonas acidophila under autotrophic and osmo-mixotrophic growth conditions Y1 - 2007 ER - TY - JOUR A1 - Scherber, Christoph A1 - Eisenhauer, Nico A1 - Weisser, Wolfgang W. A1 - Schmid, Bernhard A1 - Voigt, Winfried A1 - Fischer, Markus A1 - Schukze, Ernst-Detlef A1 - Roscher, Christiane A1 - Weigelt, Alexandra A1 - Allan, Eric A1 - Beßler, Holger A1 - Bonkowski, Michael A1 - Buchmann, Nina A1 - Buscot, François A1 - Clement, Lars W. A1 - Ebeling, Anne A1 - Engels, Christof A1 - Halle, Stefan A1 - Kertscher, Ilona A1 - Klein, Alexandra-Maria A1 - Koller, Robert A1 - König, Stephan A1 - Kowalski, Esther A1 - Kummer, Volker A1 - Kuu, Annely A1 - Lange, Markus A1 - Lauterbach, Dirk T1 - Bottom-up effects of plant diversity on multitrophic interactions in a biodiversity experiment Y1 - 2010 UR - http://www.nature.com/nature/journal/v468/n7323/full/nature09492.html SN - 0028-0836 ER - TY - JOUR A1 - Schiffers, Katja A1 - Schurr, Frank Martin A1 - Tielbörger, Katja A1 - Urbach, Carsten A1 - Moloney, Kirk A. A1 - Jeltsch, Florian T1 - Dealing with virtual aggregation : a new index for analysing heterogeneous point patterns Y1 - 2008 UR - http://www3.interscience.wiley.com/journal/117966123/home U6 - https://doi.org/10.1111/j.0906-7590.2008.05374.x SN - 0906-7590 ER - TY - JOUR A1 - Lokstein, Heiko A1 - Hoextermann, Ekkehard A1 - Leupold, Dieter A1 - Garab, Gyoezoe A1 - Renger, Gernot T1 - A tribute : Professor Dr. Paul Hoffmann (March 28, 1931-July 10, 2008), a scientist with a great collaborative spirit Y1 - 2009 UR - http://www.springerlink.com/content/100325 U6 - https://doi.org/10.1007/s11120-009-9414-6 SN - 0166-8595 ER - TY - JOUR A1 - Sellrie, Frank A1 - Schenk, Jörg A. A1 - Behrsing, Olaf A1 - Drechsel, Oliver A1 - Micheel, Burkhard T1 - Cloning and characterization of a single chain antibody to glucose oxidase from a murine hybridoma N2 - Glucose oxidase (GOD) is an oxidoreductase catalyzing the reaction of glucose and oxygen to peroxide and gluconolacton (EC 1.1.3.4.). GOD is a widely used enzyme in biotechnology. Therefore the production of monoclonal antibodies and antibody fragments to GOD are of interest in bioanalytics and even tumor therapy. We describe here the generation of a panel of monoclonal antibodies to native and heat inactivated GOD. One of the hybridomas, E13BC8, was used for cloning of a single chain antibody (scFv). This scFv was expressed in Escherichia coli XL1-blue with the help of the vector system pOPE101. The scFv was isolated from the periplasmic fraction and detected by western blotting. It reacts specifically with soluble active GOD but does not recognize denatured GOD adsorbed to the solid phase. The same binding properties were also found for the monoclonal antibody E13BC8. Y1 - 2007 UR - http://www.jbmb.or.kr/fulltext/jbmb/view.php?vol=40&page=875 ER -