TY - JOUR A1 - Wellert, Stefan A1 - Tiersch, Brigitte A1 - Koetz, Joachim A1 - Richardt, Andre A1 - Lapp, Alain A1 - Holderer, Olaf A1 - Gaeb, Juergen A1 - Blum, Marc-Michael A1 - Schulreich, Christoph A1 - Stehle, Ralf A1 - Hellweg, Thomas T1 - The DFPase from Loligo vulgaris in sugar surfactant-based bicontinuous microemulsions structure, dynamics, and enzyme activity JF - European biophysics journal : with biophysics letters ; an international journal of biophysics N2 - The enzyme diisopropyl fluorophosphatase (DFPase) from the squid Loligo vulgaris is of great interest because of its ability to catalyze the hydrolysis of highly toxic organophosphates. In this work, the enzyme structure in solution (native state) was studied by use of different scattering methods. The results are compared with those from hydrodynamic model calculations based on the DFPase crystal structure. Bicontinuous microemulsions made of sugar surfactants are discussed as host systems for the DFPase. The microemulsion remains stable in the presence of the enzyme, which is shown by means of scattering experiments. Moreover, activity assays reveal that the DFPase still has high activity in this complex reaction medium. To complement the scattering experiments cryo-SEM was also employed to study the microemulsion structure. KW - Dynamic light scattering KW - Neutron spin echo KW - Microemulsion KW - Enzyme catalysis KW - SANS KW - Protein structure Y1 - 2011 U6 - https://doi.org/10.1007/s00249-011-0689-0 SN - 0175-7571 VL - 40 IS - 6 SP - 761 EP - 774 PB - Springer CY - New York ER - TY - JOUR A1 - Speck, Janina A1 - Arndt, Katja Maren A1 - Müller, Kristian M. T1 - Efficient phage display of intracellularly folded proteins mediated by the TAT pathway JF - Protein engineering design & selection N2 - Phage display with filamentous phages is widely applied and well developed, yet proteins requiring a cytoplasmic environment for correct folding still defy attempts at functional display. To extend applicability of phage display, we employed the twin-arginine translocation (TAT) pathway to incorporate proteins fused to the C-terminal domain of the geneIII protein into phage particles. We investigated functionality and display level of fluorescent proteins depending on the translocation pathway, which was the TAT, general secretory (SEC) or signal recognition particle (SRP) pathway mediated by the TorA, PelB or DsbA signal sequences, respectively. Importantly, for green fluorescent protein, yellow fluorescent protein and cyan fluorescent protein, only TAT, but not SEC or SRP, translocation led to fluorescence of purified phage particles, although all three proteins could be displayed regardless of the translocation pathway. In contrast, the monomeric red fluorescent protein mCherry was functionally displayed regardless of the translocation pathway. Hence, correct folding and fluorophor formation of mCherry is not limited to the cytosol. Furthermore, we successfully displayed firefly luciferase as well as an 83 kDa argonaute protein, both containing free cysteines. This demonstrates broad applicability of the TAT-mediated phagemid system for the display of proteins requiring cytoplasmic factors for correct folding and should prove useful for the display of proteins requiring incorporation of co-factors or oligomerization to gain function. KW - g3p KW - phagemid display KW - protein design KW - protein engineering KW - selection Y1 - 2011 U6 - https://doi.org/10.1093/protein/gzr001 SN - 1741-0126 VL - 24 IS - 6 SP - 473 EP - 484 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Springer, Anne A1 - Brandstädter, Simone A1 - Liepelt, Roman A1 - Birngruber, Teresa A1 - Giese, Martin A1 - Mechsner, Franz A1 - Prinz, Wolfgang T1 - Motor execution affects action prediction JF - Brain and cognition : a journal of experimental and clinical research N2 - Previous studies provided evidence of the claim that the prediction of occluded action involves real-time simulation. We report two experiments that aimed to study how real-time simulation is affected by simultaneous action execution under conditions of full, partial or no overlap between observed and executed actions. This overlap was analysed by comparing the body sides and the movement kinematics involved in the observed and the executed action. While performing actions, participants observed point-light (PL) actions that were interrupted by an occluder, followed by a test pose. The task was to judge whether the test pose depicted a continuation of the occluded action in the same depth angle. Using a paradigm proposed by Graf et al., we independently manipulated the duration of the occluder and the temporal advance of the test pose relative to occlusion onset (occluder time and pose time, respectively). This paradigm allows the assessment of real-time simulation, based on prediction performance across different occluder time/pose time combinations (i.e., improved task performance with decreasing time distance between occluder time and pose time is taken to reflect real-time simulation). The PL actor could be perceived as from the front or back, as indicated by task instructions. In Experiment 1 (front view instructions), evidence of action simulation was obtained for partial overlap (i.e., observed and performed action corresponded either in body side or movement kinematics), but not for full or no overlap conditions. The same pattern was obtained in Experiment 2 (back view instructions), ruling out a spatial compatibility explanation for the real-time pattern observed. Our results suggest that motor processes affect action prediction and real-time simulation. The strength of their impact varies as a function of the overlap between observed and executed actions. KW - Action prediction KW - Internal simulation KW - Motor execution KW - Common coding KW - Perception-action-link Y1 - 2011 U6 - https://doi.org/10.1016/j.bandc.2011.03.007 SN - 0278-2626 VL - 76 IS - 1 SP - 26 EP - 36 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Masanes, Lluis A1 - Müller, Markus P. T1 - A derivation of quantum theory from physical requirements JF - New journal of physics : the open-access journal for physics N2 - Quantum theory (QT) is usually formulated in terms of abstract mathematical postulates involving Hilbert spaces, state vectors and unitary operators. In this paper, we show that the full formalism of QT can instead be derived from five simple physical requirements, based on elementary assumptions regarding preparations, transformations and measurements. This is very similar to the usual formulation of special relativity, where two simple physical requirements-the principles of relativity and light speed invariance-are used to derive the mathematical structure of Minkowski space-time. Our derivation provides insights into the physical origin of the structure of quantum state spaces (including a group-theoretic explanation of the Bloch ball and its three dimensionality) and suggests several natural possibilities to construct consistent modifications of QT. Y1 - 2011 U6 - https://doi.org/10.1088/1367-2630/13/6/063001 SN - 1367-2630 VL - 13 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Antoniou, Stella A1 - Pashalidis, Ioannis A1 - Gessner, Andre A1 - Kumke, Michael Uwe T1 - Spectroscopic investigations on the effect of humic acid on the formation and solubility of secondary solid phases of Ln(2)(CO3)(3) JF - Journal of rare earths N2 - The formation of secondary Ln(III) solid phases (e.g., Nd-2(CO3)(3) and Sm-2(CO3)(3)) was studied as a function of the humic acid concentration in 0.1 mol/L NaClO4 aqueous solution in the neutral pH range (5-6.5). The solid phases under investigation were prepared by alkaline precipitation under 100% CO2 atmosphere and characterized by attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR), X-ray diffraction (XRD), time-resolved laser fluorescence spectroscopy (TRLFS), diffuse reflectance ultraviolet-visible (DR-UV-Vis), Raman spectroscopy, and solubility measurements. The spectroscopic data obtained indicated that Nd-2(CO3)(3) and Sm-2(CO3)(3) were stable and remained the solubility limiting solid phases even in the presence of increased humic acid concentration (0.5 g/L) in solution. Upon base addition in the Ln(III)-HA system, decomplexation of the previously formed Ln(III)-humate complexes and precipitation of two distinct phases occurred, the inorganic (Ln(2)(CO3)(3)) and the organic phase (HA), which was adsorbed on the particle surface of the former. Nevertheless, humic acid affected the particle size of the solid phases. Increasing humic acid concentration resulted in decreasing crystallite size of the Nd-2(CO3)(3) and increasing crystallite size of the Sm-2(CO3)(3) solid phase, and affected inversely the solubility of the solid phases. However, this impact on the solid phase properties was expected to be of minor relevance regarding the chemical behavior and migration of trivalent lanthanides and actinides in the geosphere. KW - lanthanide ions KW - humic acid KW - solid phase KW - solubility KW - Raman KW - TRLFS KW - DR-UV-Vis KW - rare earths Y1 - 2011 U6 - https://doi.org/10.1016/S1002-0721(10)60490-5 SN - 1002-0721 VL - 29 IS - 6 SP - 516 EP - 521 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Schmidt, Bernd A1 - Berger, René A1 - Kelling, Alexandra A1 - Schilde, Uwe T1 - Pd-Catalyzed [2+2+1] coupling of alkynes and arenes phenol diazonium salts as mechanistic trapdoors JF - Chemistry - a European journal N2 - Alkynes and phenol diazonium salts undergo a Pd-catalyzed [2+2+1] cyclization reaction to spiro[4,5]decatetraene-7-ones. This structure was confirmed for one example by X-ray single-crystal structure analysis. The reaction is believed to proceed through oxidative addition of the phenol diazonium cation to Pd(0), subsequent insertion of two alkynes, followed by irreversible spirocyclization. KW - alkynes KW - diazo compounds KW - palladium KW - phenols KW - spirocycles Y1 - 2011 U6 - https://doi.org/10.1002/chem.201100609 SN - 0947-6539 VL - 17 IS - 25 SP - 7032 EP - 7040 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Carlsohn, Anja A1 - Cassel, Michael A1 - Linne, Karsten A1 - Mayer, Frank T1 - How much is too much? - a case report of nutritional supplement use of a high-performance athlete JF - The British journal of nutrition : an international journal devoted to the science of human and animal nutrition N2 - Although dietary nutrient intake is often adequate, nutritional supplement use is common among elite athletes. However, high-dose supplements or the use of multiple supplements may exceed the recommended daily allowance (RDA) of particular nutrients or even result in a daily intake above tolerable upper limits (UL). The present case report presents nutritional intake data and supplement use of a highly trained male swimmer competing at international level. Habitual energy and micronutrient intake were analysed by 3 d dietary reports. Supplement use and dosage were assessed, and total amount of nutrient supply was calculated. Micronutrient intake was evaluated based on RDA and UL as presented by the European Scientific Committee on Food, and maximum permitted levels in supplements (MPL) are given. The athlete's diet provided adequate micronutrient content well above RDA except for vitamin D. Simultaneous use of ten different supplements was reported, resulting in excess intake above tolerable UL for folate, vitamin E and Zn. Additionally, daily supplement dosage was considerably above MPL for nine micronutrients consumed as artificial products. Risks and possible side effects of exceeding UL by the athlete are discussed. Athletes with high energy intake may be at risk of exceeding UL of particular nutrients if multiple supplements are added. Therefore, dietary counselling of athletes should include assessment of habitual diet and nutritional supplement intake. Educating athletes to balance their diets instead of taking supplements might be prudent to prevent health risks that may occur with long-term excess nutrient intake. KW - Dietary supplements KW - Tolerable upper limits KW - Elite athletes KW - Vitamins KW - Minerals Y1 - 2011 U6 - https://doi.org/10.1017/S0007114510005556 SN - 0007-1145 VL - 105 IS - 12 SP - 1724 EP - 1728 PB - Cambridge Univ. Press CY - Cambridge ER - TY - JOUR A1 - Ferir, Geoffrey A1 - Vermeire, Kurt A1 - Huskens, Dana A1 - Balzarini, Jan A1 - Van Damme, Els J. M. A1 - Kehr, Jan-Christoph A1 - Dittmann-Thünemann, Elke A1 - Swanson, Michael D. A1 - Markovitz, David M. A1 - Schols, Dominique T1 - Synergistic in vitro anti-HIV type 1 activity of tenofovir with carbohydrate-binding agents (CBAs) JF - Antiviral research N2 - Tenofovir, a well-known and highly prescribed anti-HIV-1 drug for the treatment of HIV/AIDS infections, has recently also shown its effectiveness as a potential microbicide drug in the prevention of HIV transmission. Here, we evaluated the combination of tenofovir with various members of the class of carbohydrate-binding agents (CBAs) targeting the glycans on the viral envelope gp120 for their anti-HIV efficacy. The tenofovir/CBA combinations predominantly showed synergistic antiviral activity using the median effect principle. These findings illustrate that combination of tenofovir with CBAs may increase the antiviral potency of the individual drugs and reducing the risk on potential side-effects. KW - Tenofovir KW - Carbohydrate-binding agents KW - HIV KW - Synergy KW - Microbicide Y1 - 2011 U6 - https://doi.org/10.1016/j.antiviral.2011.03.188 SN - 0166-3542 VL - 90 IS - 3 SP - 200 EP - 204 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Schwarte, Sandra A1 - Tiedemann, Ralph T1 - A Gene Duplication/Loss Event in the Ribulose-1,5-Bisphosphate-Carboxylase/Oxygenase (Rubisco) Small Subunit Gene Family among Accessions of Arabidopsis thaliana JF - Molecular biology and evolution N2 - Rubisco (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39), the most abundant protein in nature, catalyzes the assimilation of CO(2) (worldwide about 10(11) t each year) by carboxylation of ribulose-1,5-bisphosphate. It is a hexadecamer consisting of eight large and eight small subunits. Although the Rubisco large subunit (rbcL) is encoded by a single gene on the multicopy chloroplast genome, the Rubisco small subunits (rbcS) are encoded by a family of nuclear genes. In Arabidopsis thaliana, the rbcS gene family comprises four members, that is, rbcS-1a, rbcS-1b, rbcS-2b, and rbcS-3b. We sequenced all Rubisco genes in 26 worldwide distributed A. thaliana accessions. In three of these accessions, we detected a gene duplication/loss event, where rbcS-1b was lost and substituted by a duplicate of rbcS-2b (called rbcS-2b*). By screening 74 additional accessions using a specific polymerase chain reaction assay, we detected five additional accessions with this duplication/loss event. In summary, we found the gene duplication/loss in 8 of 100 A. thaliana accessions, namely, Bch, Bu, Bur, Cvi, Fei, Lm, Sha, and Sorbo. We sequenced an about 1-kb promoter region for all Rubisco genes as well. This analysis revealed that the gene duplication/loss event was associated with promoter alterations (two insertions of 450 and 850 bp, one deletion of 730 bp) in rbcS-2b and a promoter deletion (2.3 kb) in rbcS-2b* in all eight affected accessions. The substitution of rbcS-1b by a duplicate of rbcS-2b (i.e., rbcS-2b*) might be caused by gene conversion. All four Rubisco genes evolve under purifying selection, as expected for central genes of the highly conserved photosystem of green plants. We inferred a single positive selected site, a tyrosine to aspartic acid substitution at position 72 in rbcS-1b. Exactly the same substitution compromises carboxylase activity in the cyanobacterium Anacystis nidulans. In A. thaliana, this substitution is associated with an inferred recombination. Functional implications of the substitution remain to be evaluated. KW - Arabidopsis thaliana KW - Arabidopsis lyrata KW - Rubisco KW - gene duplication KW - positive selection Y1 - 2011 U6 - https://doi.org/10.1093/molbev/msr008 SN - 0737-4038 VL - 28 IS - 6 SP - 1861 EP - 1876 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Bieneck, Steffen A1 - Krahé, Barbara T1 - Blaming the victim and exonerating the perpetrator in cases of rape and robbery is there a double standard? JF - Journal of interpersonal violence : concerned with the study and treatment of victims and perpetrators of physical and sexual violence N2 - Research in legal decision making has demonstrated the tendency to blame the victim and exonerate the perpetrator of sexual assault. This study examined the hypothesis of a special leniency bias in rape cases by comparing them to cases of robbery. N = 288 participants received descriptions of rape and robbery of a female victim by a male perpetrator and made ratings of victim and perpetrator blame. Case scenarios varied with respect to the prior relationship (strangers, acquaintances, ex-partners) and coercive strategy (force vs. exploiting victim intoxication). More blame was attributed to the victim and less blame was attributed to the perpetrator for rape than for robbery. Information about a prior relationship between victim and perpetrator increased ratings of victim blame and decreased perceptions of perpetrator blame in the rape cases, but not in the robbery cases. The findings support the notion of a special leniency bias in sexual assault cases. KW - criminology KW - leniency bias KW - rape KW - robbery KW - victim blame Y1 - 2011 U6 - https://doi.org/10.1177/0886260510372945 SN - 0886-2605 VL - 26 IS - 9 SP - 1785 EP - 1797 PB - Sage Publ. CY - Thousand Oaks ER - TY - JOUR A1 - Baur, Heiner A1 - Müller, Steffen A1 - Hirschmüller, Anja A1 - Cassel, Michael A1 - Weber, Josefine A1 - Mayer, Frank T1 - Comparison in lower leg neuromuscular activity between runners with unilateral mid-portion Achilles tendinopathy and healthy individuals JF - Journal of electromyography and kinesiology N2 - Neuromuscular control in functional situations and possible impairments due to Achilles tendinopathy are not well understood. Thirty controls (CO) and 30 runners with Achilles tendinopathy (AT) were tested on a treadmill at 3.33 m s(-1) (12 km h(-1)). Neuromuscular activity of the lower leg (tibialis anterior, peroneal, and gastrocnemius muscle) was measured by surface electromyography. Mean amplitude values (MAV) for the gait cycle phases preactivation, weight acceptance and push-off were calculated and normalised to the mean activity of the entire gait cycle. MAVs of the tibialis anterior did not differ between CO and AT in any gait cycle phase. The activation of the peroneal muscle was lower in AT in weight acceptance (p = 0.006), whereas no difference between CO and AT was found in preactivation (p = 0.71) and push-off (p = 0.83). Also, MAVs of the gastrocnemius muscle did not differ between AT and CO in preactivity (p = 0.71) but were reduced in AT during weight acceptance (p = 0.001) and push-off (p = 0.04). Achilles tendinopathy does not seem to alter pre-programmed neural control but might induce mechanical deficits of the lower extremity during weight bearing (joint stability). This should be addressed in the therapy process of AT. KW - Ankle joint KW - Electromyography KW - Overuse injury KW - Running gait Y1 - 2011 U6 - https://doi.org/10.1016/j.jelekin.2010.11.010 SN - 1050-6411 VL - 21 IS - 3 SP - 499 EP - 505 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Voltmer, Edgar A1 - Spahn, Claudia A1 - Schaarschmidt, Uwe A1 - Kieschke, Ulf T1 - Work-related behavior and experience patterns of entrepreneurs compared to teachers and physicians JF - International archives of occupational and environmental health N2 - Purpose This study examined the status of health-related behavior and experience patterns of entrepreneurs in comparison with teachers and physicians to identify specific health risks and resources. Methods Entrepreneurs (n = 632), teachers (n = 5,196), and physicians (n = 549) were surveyed in a cross-sectional design. The questionnaire Work-related Behavior and Experience Patterns (AVEM) was used for all professions and, in addition, two scales (health prevention and self-confidence) from the Checklist for Entrepreneurs in the sample of entrepreneurs. Results The largest proportion of the entrepreneurs (45%) presented with a healthy pattern (compared with 18.4% teachers and 18.3% physicians). Thirty-eight percent of entrepreneurs showed a risk pattern of overexertion and stress, followed by teachers (28.9%) and physicians (20.6%). Unambitious or burnout patterns were seen in only 9.3/8.2% of entrepreneurs, respectively, and 25.3/27.3% of teachers, and 39.6/21.5% of physicians. While the distribution of patterns in teachers and physicians differed significantly between genders, a gender difference was not found among entrepreneurs. Entrepreneurs with the risk pattern of overexertion scored significantly (P < 0.01) lower in self-confidence and health care than those with the healthy pattern. Conclusions The development of a successful enterprise depends, in part, on the health of the entrepreneur. The large proportion of entrepreneurs with the healthy pattern irrespective of gender may support the notion that self-selection effects of healthy individuals in this special career might be important. At the same time, a large proportion was at risk for overexertion and might benefit from measures to cope with professional demands and stress and promote a healthy behavior pattern. KW - Entrepreneurs KW - Physicians KW - Teachers KW - Occupational stress KW - Psychosocial health risks and resources Y1 - 2011 U6 - https://doi.org/10.1007/s00420-011-0632-9 SN - 0340-0131 VL - 84 IS - 5 SP - 479 EP - 490 PB - Springer CY - New York ER - TY - JOUR A1 - Di Giacomo, Domenico A1 - Bindi, Dino A1 - Parolai, Stefano A1 - Oth, Adrien T1 - Residual analysis of teleseismic P-wave energy magnitude estimates: inter- and intrastation variability JF - Geophysical journal international N2 - P>Computing the magnitude of an earthquake requires correcting for the propagation effects from the source to the receivers. This is often accomplished by performing numerical simulations using a suitable Earth model. In this work, the energy magnitude M(e) is considered and its determination is performed using theoretical spectral amplitude decay functions over teleseismic distances based on the global Earth model AK135Q. Since the high frequency part (above the corner frequency) of the source spectrum has to be considered in computing M(e), the influence of propagation and site effects may not be negligible and they could bias the single station M(e) estimations. Therefore, in this study we assess the inter- and intrastation distributions of errors by considering the M(e) residuals computed for a large data set of earthquakes recorded at teleseismic distances by seismic stations deployed worldwide. To separate the inter- and intrastation contribution of errors, we apply a maximum likelihood approach to the M(e) residuals. We show that the interstation errors (describing a sort of site effect for a station) are within +/- 0.2 magnitude units for most stations and their spatial distribution reflects the expected lateral variation affecting the velocity and attenuation of the Earth's structure in the uppermost layers, not accounted for by the 1-D AK135Q model. The variance of the intrastation error distribution (describing the record-to-record component of variability) is larger than the interstation one (0.240 against 0.159), and the spatial distribution of the errors is not random but shows specific patterns depending on the source-to-station paths. The set of coefficients empirically determined may be used in the future to account for the heterogeneities of the real Earth not considered in the theoretical calculations of the spectral amplitude decay functions used to correct the recorded data for propagation effects. KW - Time series analysis KW - Earthquake source observations KW - Body waves KW - Site effects KW - Wave propagation Y1 - 2011 U6 - https://doi.org/10.1111/j.1365-246X.2011.05019.x SN - 0956-540X VL - 185 IS - 3 SP - 1444 EP - 1454 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Acciari, V. A. A1 - Aliu, E. A1 - Araya, M. A1 - Arlen, T. A1 - Aune, T. A1 - Beilicke, M. A1 - Benbow, W. A1 - Bradbury, S. M. A1 - Buckley, J. H. A1 - Bugaev, V. A1 - Byrum, K. A1 - Cannon, A. A1 - Cesarini, A. A1 - Ciupik, L. A1 - Collins-Hughes, E. A1 - Cui, W. A1 - Dickherber, R. A1 - Duke, C. A1 - Falcone, A. A1 - Finley, J. P. A1 - Fortson, L. A1 - Furniss, A. A1 - Galante, N. A1 - Gall, D. A1 - Godambe, S. A1 - Griffin, S. A1 - Guenette, R. A1 - Gyuk, G. A1 - Hanna, D. A1 - Holder, J. A1 - Hughes, G. A1 - Hui, C. M. A1 - Humensky, T. B. A1 - Imran, A. A1 - Kaaret, P. A1 - Kertzman, M. A1 - Krawczynski, H. A1 - Krennrich, F. A1 - Madhavan, A. S. A1 - Maier, G. A1 - Majumdar, P. A1 - McArthur, S. A1 - Moriarty, P. A1 - Ong, R. A. A1 - Otte, A. N. A1 - Pandel, D. A1 - Park, N. A1 - Perkins, J. S. A1 - Pohl, Martin A1 - Prokoph, H. A1 - Quinn, J. A1 - Ragan, K. A1 - Reyes, L. C. A1 - Reynolds, P. T. A1 - Roache, E. A1 - Rose, H. J. A1 - Saxon, D. B. A1 - Sembroski, G. H. A1 - Sentuerk, G. D. A1 - Smith, A. W. A1 - Tesic, G. A1 - Theiling, M. A1 - Thibadeau, S. A1 - Varlotta, A. A1 - Vincent, S. A1 - Vivier, M. A1 - Wakely, S. P. A1 - Ward, J. E. A1 - Weekes, T. C. A1 - Weinstein, A. A1 - Weisgarber, T. A1 - Weng, S. A1 - Williams, D. A. A1 - Wood, M. A1 - Zitzer, B. T1 - Gamma-ray observations of the Be/Pulsar binary 1A 0535+262 during a Giant X-Ray outburst JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - Giant X-ray outbursts, with luminosities of about 10(37) erg s(-1), are observed roughly every five years from the nearby Be/pulsar binary 1A 0535+262. In this article, we present observations of the source with VERITAS at very high energies (VHEs; E > 100 GeV) triggered by the X-ray outburst in 2009 December. The observations started shortly after the onset of the outburst and provided comprehensive coverage of the episode, as well as the 111 day binary orbit. No VHE emission is evident at any time. We also examined data from the contemporaneous observations of 1A 0535+262 with the Fermi/Large Area Telescope at high-energy photons (E > 0.1 GeV) and failed to detect the source at GeV energies. The X-ray continua measured with the Swift/X-Ray Telescope and the RXTE/PCA can be well described by the combination of blackbody and Comptonized emission from thermal electrons. Therefore, the gamma-ray and X-ray observations suggest the absence of a significant population of non-thermal particles in the system. This distinguishes 1A 0535+262 from those Be X-ray binaries (such as PSR B1259-63 and LS I +61 degrees 303) that have been detected at GeV-TeV energies. We discuss the implications of the results on theoretical models. KW - acceleration of particles KW - binaries: general KW - gamma rays: general KW - stars: individual (1A 0535+262) Y1 - 2011 U6 - https://doi.org/10.1088/0004-637X/733/2/96 SN - 0004-637X VL - 733 IS - 2 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Blomeyer, Dorothea A1 - Buchmann, Arlette F. A1 - Schmid, Brigitte A1 - Jennen-Steinmetz, Christine A1 - Schmidt, Martin H. A1 - Banaschewski, Tobias A1 - Laucht, Manfred T1 - Age at first drink moderates the impact of current stressful life events on drinking behavior in young adults JF - Alcoholism : clinical and experimental research ; the official journal of the American Medical Society on Alcoholism and the Research Society on Alcoholism N2 - Background: Recent evidence from animal experiments and studies in humans suggests that early age at first drink (AFD) may lead to higher stress-induced drinking. The present study aimed to extend these findings by examining whether AFD interacted with stressful life events (SLE) and/or with daily hassles regarding the impact on drinking patterns among young adults. Method: In 306 participants of an epidemiological cohort study, AFD was assessed together with SLE during the past 3 years, daily hassles in the last month, and drinking behavior at age 22. As outcome variables, 2 variables were derived, reflecting different aspects of alcohol use: the amount of alcohol consumed in the last month and the drinking frequency, indicated by the number of drinking days in the last month. Results: Linear regression models revealed an interaction effect between the continuous measures of AFD and SLE on the amount of alcohol consumed. The earlier young adults had their first alcoholic drink and the higher the levels of SLE they were exposed to, the disproportionately more alcohol they consumed. Drinking frequency was not affected by an interaction of these variables, while daily hassles and their interaction with AFD were unrelated to drinking behavior. Conclusions: These findings highlight the importance of early age at drinking onset as a risk factor for later heavy drinking under high load of SLE. Prevention programs should aim to raise age at first contact with alcohol. Additionally, support in stressful life situations and the acquisition of effective coping strategies might prevent heavy drinking in those with earlier drinking onset. KW - Age at First Drink KW - Drinking Behavior KW - Longitudinal Study KW - Stressful Life Events KW - Daily Hassles Y1 - 2011 U6 - https://doi.org/10.1111/j.1530-0277.2011.01447.x SN - 0145-6008 VL - 35 IS - 6 SP - 1142 EP - 1148 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Taboada, Maite A1 - Brooke, Julian A1 - Tofiloski, Milan A1 - Voll, Kimberly A1 - Stede, Manfred T1 - Lexicon-Based methods for sentiment analysis JF - Computational linguistics N2 - We present a lexicon-based approach to extracting sentiment from text. The Semantic Orientation CALculator (SO-CAL) uses dictionaries of words annotated with their semantic orientation (polarity and strength), and incorporates intensification and negation. SO-CAL is applied to the polarity classification task, the process of assigning a positive or negative label to a text that captures the text's opinion towards its main subject matter. We show that SO-CAL's performance is consistent across domains and on completely unseen data. Additionally, we describe the process of dictionary creation, and our use of Mechanical Turk to check dictionaries for consistency and reliability. Y1 - 2011 SN - 0891-2017 VL - 37 IS - 2 SP - 267 EP - 307 PB - MIT Press CY - Cambridge ER - TY - JOUR A1 - Shkilnyy, Andriy A1 - Schöne, Stefanie A1 - Rumplasch, Claudia A1 - Uhlmann, Annett A1 - Hedderich, Annett A1 - Günter, Christina A1 - Taubert, Andreas T1 - Calcium phosphate mineralization with linear poly(ethylene imine) a time-resolved study JF - Colloid and polymer science : official journal of the Kolloid-Gesellschaft N2 - We have earlier shown that linear poly(ethylene imine) (LPEI) is an efficient growth modifier for calcium phosphate mineralization from aqueous solution (Shkilnyy et al., Langmuir, 2008, 24 (5), 2102). The current study addresses the growth process and the reason why LPEI is such an effective additive. To that end, the solution pH and the calcium and phosphate concentrations were monitored vs. reaction time using potentiometric, complexometric, and photometric methods. The phase transformations in the precipitates and particle morphogenesis were analyzed by X-ray diffraction and transmission electron microscopy, respectively. All measurements reveal steep decreases of the pH, calcium, and phosphate concentrations along with a rapid precipitation of brushite nanoparticles early on in the reaction. Brushite transforms into hydroxyapatite (HAP) within the first 2 h, which is much faster than what is reported, for example, for calcium phosphate precipitated with poly(acrylic acid). We propose that poly(ethylene imine) acts as a proton acceptor (weak buffer), which accelerates the transformation from brushite to HAP by taking up the protons that are released from the calcium phosphate precipitate during the phase transformation. KW - Calcium phosphate KW - Polyethylene imine KW - Mineralization KW - Kinetics Y1 - 2011 U6 - https://doi.org/10.1007/s00396-011-2403-2 SN - 0303-402X VL - 289 IS - 8 SP - 881 EP - 888 PB - Springer CY - New York ER - TY - JOUR A1 - Lahn, Mattes A1 - Dosche, Carsten A1 - Hille, Carsten T1 - Two-photon microscopy and fluorescence lifetime imaging reveal stimulus-induced intracellular Na+ and Cl- changes in cockroach salivary acinar cells JF - American journal of physiology : Cell physiology N2 - Lahn M, Dosche C, Hille C. Two-photon microscopy and fluorescence lifetime imaging reveal stimulus-induced intracellular Na+ and Cl- changes in cockroach salivary acinar cells. Am J Physiol Cell Physiol 300: C1323-C1336, 2011. First published February 23, 2011; doi: 10.1152/ajpcell.00320.2010.-The intracellular ion homeostasis in cockroach salivary acinar cells during salivation is not satisfactorily understood. This is mainly due to technical problems regarding strong tissue autofluorescence and ineffective ion concentration quantification. For minimizing these problems, we describe the successful application of two-photon (2P) microscopy partly in combination with fluorescence lifetime imaging microscopy (FLIM) to record intracellular Na+ and Cl- concentrations ([Na+](i), [Cl-](i)) in cockroach salivary acinar cells. Quantitative 2P-FLIM Cl- measurements with the dye N-(ethoxycarbonylmethyl)-6-methoxy-quinolinium bromide indicate that the resting [Cl-](i) is 1.6 times above the Cl- electrochemical equilibrium but is not influenced by pharmacological inhibition of the Na+-K+-2Cl(-) cotransporter (NKCC) and anion exchanger using bumetanide and 4,4'-diisothiocyanatodihydrostilbene-2,2'-disulfonic acid disodium salt. In contrast, rapid Cl- reuptake after extracellular Cl- removal is almost totally NKCC mediated both in the absence and presence of dopamine. However, in physiological saline [Cl-](i) does not change during dopamine stimulation although dopamine stimulates fluid secretion in these glands. On the other hand, dopamine causes a decrease in the sodium-binding benzofuran isophthalate tetra-ammonium salt (SBFI) fluorescence and an increase in the Sodium Green fluorescence after 2P excitation. This opposite behavior of both dyes suggests a dopamine-induced [Na+](i) rise in the acinar cells, which is supported by the determined 2P-action cross sections of SBFI. The [Na+](i) rise is Cl- dependent and inhibited by bumetanide. The Ca2+-ionophore ionomycin also causes a bumetanide-sensitive [Na+](i) rise. We propose that a Ca2+-mediated NKCC activity in acinar peripheral cells attributable to dopamine stimulation serves for basolateral Na+ uptake during saliva secretion and that the concomitantly transported Cl- is recycled back to the bath. KW - epithelial ion transport KW - Na+-K+-2Cl(-) cotransporter KW - MQAE KW - SBFI KW - 2P cross section Y1 - 2011 U6 - https://doi.org/10.1152/ajpcell.00320.2010 SN - 0363-6143 VL - 300 IS - 6 SP - C1323 EP - C1336 PB - American Chemical Society CY - Bethesda ER - TY - JOUR A1 - Brand, Ralf A1 - Melzer, Marcus A1 - Hagemann, Norbert T1 - Towards an implicit association test (IAT) for measuring doping attitudes in sports. Data-based recommendations developed from two recently published tests JF - Psychology of sport and exercise : PSE ; an official journal of the European Federation of Sport Psychology N2 - Objectives: Today, the doping attitudes of athletes can either be measured by asking athletes directly or with the help of indirect attitude measurement procedures as for example the implicit association test (IAT). Using indirect measures may be helpful for example when psychological effects of doping prevention programs shall be evaluated. In the present study we have analyzed and compared measurement properties of two recently published IATs. Design: The IATs "doping substance vs. tea blend" and "doping substance vs. legal nutritional supplement" were presented to two randomly assigned independent samples of 102 athletes (44 male, 58 female; mean age 23.6 years) from different sports. Both IATs were complemented by a control IAT "word vs. non-word". Methods: In order to test central measurement properties of both IATs, distributions of measured values, correlations with the control IAT, reliability analyses, and analyses of error rates were performed. Results: Results pointed to a rather negative doping attitude in most athletes. Especially the fact that in the "doping vs. supplement" IAT error rates (12%) and adaptational learning effects across test blocks were substantial (eta(2) = .22), indicating that participants had difficulties correctly assigning the word stimuli to the respective category, we see slight advantages for the "doping vs. tea" IAT (e.g. satisfactory internal scale consistency Cronbach's-alpha = .78 among athletes reporting to be regularly involved in competitions). Conclusion: The less satisfactory measurement properties of the "doping vs. supplement" IAT can possibly be explained by the fact that the boundaries between (legal) supplements and (illegal) doping substances have been shifted from time to time so that athletes were not sure whether substances were legal or not. KW - Doping KW - Attitude KW - Implicit association test (IAT) Y1 - 2011 U6 - https://doi.org/10.1016/j.psychsport.2011.01.002 SN - 1469-0292 VL - 12 IS - 3 SP - 250 EP - 256 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Brunner, Jana A1 - Ghosh, Satrajit A1 - Hoole, Philip A1 - Matthies, Melanie A1 - Tiede, Mark A1 - Perkell, Joseph T1 - The influence of auditory acuity on acoustic variability and the use of motor equivalence during adaptation to a perturbation JF - Journal of speech, language, and hearing research N2 - Purpose: The aim of this study was to relate speakers' auditory acuity for the sibilant contrast, their use of motor equivalent trading relationships in producing the sibilant /integral/, and their produced acoustic distance between the sibilants /s/ and /integral/. Specifically, the study tested the hypotheses that during adaptation to a perturbation of vocal-tract shape, high-acuity speakers use motor equivalence strategies to a greater extent than do low-acuity speakers in order to reach their smaller phonemic goal regions, and that high-acuity speakers produce greater acoustic distance between 2 sibilant phonemes than do low-acuity speakers. Method: Articulographic data from 7 German speakers adapting to a perturbation were analyzed for the use of motor equivalence. The speakers' produced acoustic distance between /s/ and /integral/ was calculated. Auditory acuity was assessed for the same speakers. Results: High-acuity speakers used motor equivalence to a greater extent when adapting to a perturbation than did low-acuity speakers. Additionally, high-acuity speakers produced greater acoustic contrasts than did low-acuity-speakers. It was observed that speech rate had an influence on the use of motor equivalence: Slow speakers used motor equivalence to a lesser degree than did fast speakers. Conclusion: These results provide support for the mutual interdependence of speech perception and production. KW - articulation KW - palate KW - speech sound KW - speech intelligibility Y1 - 2011 U6 - https://doi.org/10.1044/1092-4388(2010/09-0256) SN - 1092-4388 VL - 54 IS - 3 SP - 727 EP - 739 PB - American Speech-Language-Hearing Assoc. CY - Rockville ER - TY - JOUR A1 - Roul, Pradip T1 - Numerical solutions of time fractional degenerate parabolic equations by variational iteration method with Jumarie-modified Riemann-Liouville derivative JF - Mathematical methods in the applied sciences N2 - In this article, the fractional variational iteration method is employed for computing the approximate analytical solutions of degenerate parabolic equations with fractional time derivative. The time-fractional derivatives are described by the use of a new approach, the so-called Jumarie modified Riemann-Liouville derivative, instead in the sense of Caputo. The approximate solutions of our model problem are calculated in the form of convergent series with easily computable components. Moreover, the numerical solution is compared with the exact solution and the quantitative estimate of accuracy is obtained. The results of the study reveal that the proposed method with modified fractional Riemann-Liouville derivatives is efficient, accurate, and convenient for solving the fractional partial differential equations in multi-dimensional spaces without using any linearization, perturbation or restrictive assumptions. KW - variational iteration method KW - biological population equations KW - fractional calculus KW - exact solution KW - Mittag-Leffler function Y1 - 2011 U6 - https://doi.org/10.1002/mma.1418 SN - 0170-4214 VL - 34 IS - 9 SP - 1025 EP - 1035 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Pollatos, Olga A1 - Werner, Natalie S. A1 - Duschek, Stefan A1 - Schandry, Rainer A1 - Matthias, Ellen A1 - Traut-Mattausch, Eva A1 - Herbert, Beate M. T1 - Differential effects of alexithymia subscales on autonomic reactivity and anxiety during social stress JF - Journal of psychosomatic research N2 - Objectives: Alexithymia is characterized by a difficulty in identifying and describing one's emotions. Recent research has associated differential effects of the alexithymia facets to hypothalamic pituitary adrenal (HPA) axis markers during stress. This study aimed to analyze how the facets of alexithymia interact with autonomic reactivity as well as self- and observer-rated anxiety during a social stress task. Methods: With the use of a public-speaking paradigm, skin conductance levels (SCLs) and heart rate (HR) during the defined periods of baseline, preparation, stress, and recovery were assessed in 60 volunteers (42 females, mean age 22.8) categorized as having either high (HDA) or low (LDA) degrees of alexithymia. Results: We found smaller SCLs during preparation and speech in the HDA group. Regression analyses indicated that only the alexithymia facet "difficulty in describing feelings" (DDF) was associated with smaller electrodermal responses. In the HDA group, self- and observer-rated anxiety was higher in the HDA than in the LDA group, which was attributable to higher scores in the subscales "difficulty in identifying feelings" (DIF) and "externally oriented thinking" (EOT). Conclusions: Our data support and specify the decoupling hypothesis of alexithymia by showing that the facets of alexithymia are differentially related to autonomic reactivity as well as self- and observer-rated anxiety during social stress. KW - Alexithymia KW - Autonomic response KW - Social stress KW - Skin conductance KW - Anxiety KW - Social performance KW - Decoupling hypothesis Y1 - 2011 U6 - https://doi.org/10.1016/j.jpsychores.2010.12.003 SN - 0022-3999 VL - 70 IS - 6 SP - 525 EP - 533 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Risse, Sarah A1 - Kliegl, Reinhold T1 - Adult age differences in the perceptual span during reading JF - Psychology and aging N2 - Following up on research suggesting an age-related reduction in the rightward extent of the perceptual span during reading (Rayner, Castelhano, & Yang, 2009), we compared old and young adults in an N + 2-boundary paradigm in which a nonword preview of word N + 2 or word N + 2 itself is replaced by the target word once the eyes cross an invisible boundary located after word N. The intermediate word N + I was always three letters long. Gaze durations on word N + 2 were significantly shorter for identical than nonword N + 2 preview both for young and for old adults, with no significant difference in this preview benefit. Young adults, however, did modulate their gaze duration on word N more strongly than old adults in response to the difficulty of the parafoveal word N + I. Taken together, the results suggest a dissociation of preview benefit and parafoveal-on-foveal effect. Results are discussed in terms of age-related decline in resilience towards distributed processing while simultaneously preserving the ability to integrate parafoveal information into foveal processing. As such, the present results relate to proposals of regulatory compensation strategies older adults use to secure an overall reading speed very similar to that of young adults. KW - age differences KW - perceptual span KW - preview benefit KW - parafoveal-on-foveal effect KW - compensation strategies Y1 - 2011 U6 - https://doi.org/10.1037/a0021616 SN - 0882-7974 VL - 26 IS - 2 SP - 451 EP - 460 PB - American Psychological Association CY - Washington ER - TY - JOUR A1 - Tsegaye, Mulugeta Tarekegne A1 - De Bleser, Ria A1 - Iribarren, Carolina T1 - The effect of literacy on oral language processing implications for aphasia tests JF - Clinical linguistics & phonetics N2 - Most studies investigating the impact of literacy on oral language processing have shown that literacy provides phonological awareness skills in the processing of oral language. The implications of these results on aphasia tests could be significant and pose questions on the adequacy of such tools for testing non-literate individuals. Aiming at examining the impact of literacy on oral language processing and its implication on aphasia tests, this study tested 12 non-literate and 12 literate individuals with a modified Amharic version of the Bilingual Aphasia Test (Paradis and Amberber, 1991, Bilingual Aphasia Test. Amharic version. Hillsdale, NJ: Lawrence Erlbaum.). The problems of phonological awareness skills in oral language processing in non-literates are substantiated. In addition, compared with literate participants, non-literate individuals demonstrated difficulties in the word/sentence-picture matching tasks. This study has also revealed that the Amharic version of the Bilingual Aphasia Test may be viable for testing Amharic-speaking non-literate individuals with aphasia when modifications are incorporated. KW - aphasia KW - Bilingual Aphasia Test KW - literacy KW - Amharic KW - phonological awareness KW - word/sentence-picture matching Y1 - 2011 U6 - https://doi.org/10.3109/02699206.2011.567348 SN - 0269-9206 VL - 25 IS - 6-7 SP - 628 EP - 639 PB - Taylor & Francis Group CY - London ER - TY - JOUR A1 - Cockburn, Robert A. A1 - Siegmann, Rebekka A1 - Payne, Kevin A. A1 - Beuermann, Sabine A1 - McKenna, Timothy F. L. A1 - Hutchinson, Robin A. T1 - Free Radical Copolymerization Kinetics of gamma-Methyl-alpha-methylene-gamma-butyrolactone (MeMBL) JF - Biomacromolecules : an interdisciplinary journal focused at the interface of polymer science and the biological sciences N2 - The propagation kinetics and copolymerization behavior of the biorenewable monomer gamma-methyl-alpha-methylene-gamma-butyrolactone (MeMBL) are studied using the Pulsed laser polymerization (PLP)/size exclusion chromatography (SEC) technique. The propagation rate coefficent for MeMBL is 15% higher than that of its structural analogue, methyl methacrylate (MMA), with a similar activation energy of 21.8 kJ . mol(-1). When compared to MMA, MeMBL is preferentially incorporated into copolymers when reacted with styrene (ST), MMA, and n-butyl acrylate (BA); the monomer reactivity ratios fit from bulk MeMBL/ST, MeMBL/MMA, and MeMBL/BA copolymerizations are r(MeMBL) = 0.80 +/- 0.04 and r(ST) = 0.34 +/- 0.04, r(MeMBL), = 3.0 +/- 0.3 and r(MMA) = 0.33 +/- 0.01, and r(MeMBL) = 7.0 +/- 2.0 and r(BA) = 0.16 +/- 0.03, respectively. In all cases, no significant variation with temperature was found between 50 and 90 degrees C. The implicit penultimate unit effect (IPUE) model was found to adequately fit the composition-averaged copolymerization propagation rate coefficient, k(p,cop), for the three systems. Y1 - 2011 U6 - https://doi.org/10.1021/bm200400s SN - 1525-7797 VL - 12 IS - 6 SP - 2319 EP - 2326 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Srinivasan, K. A1 - Senthilkumar, Dharmapuri Vijayan A1 - Murali, K. A1 - Lakshmanan, Muthusamy A1 - Kurths, Jürgen T1 - Synchronization transitions in coupled time-delay electronic circuits with a threshold nonlinearity JF - Chaos : an interdisciplinary journal of nonlinear science N2 - Experimental observations of typical kinds of synchronization transitions are reported in unidirectionally coupled time-delay electronic circuits with a threshold nonlinearity and two time delays, namely feedback delay tau(1) and coupling delay tau(2). We have observed transitions from anticipatory to lag via complete synchronization and their inverse counterparts with excitatory and inhibitory couplings, respectively, as a function of the coupling delay tau(2). The anticipating and lag times depend on the difference between the feedback and the coupling delays. A single stability condition for all the different types of synchronization is found to be valid as the stability condition is independent of both the delays. Further, the existence of different kinds of synchronizations observed experimentally is corroborated by numerical simulations and from the changes in the Lyapunov exponents of the coupled time-delay systems. Y1 - 2011 U6 - https://doi.org/10.1063/1.3591791 SN - 1054-1500 VL - 21 IS - 2 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Kralemann, Björn A1 - Pikovskij, Arkadij A1 - Rosenblum, Michael T1 - Reconstructing phase dynamics of oscillator networks JF - Chaos : an interdisciplinary journal of nonlinear science N2 - We generalize our recent approach to the reconstruction of phase dynamics of coupled oscillators from data [B. Kralemann et al., Phys. Rev. E 77, 066205 (2008)] to cover the case of small networks of coupled periodic units. Starting from a multivariate time series, we first reconstruct genuine phases and then obtain the coupling functions in terms of these phases. Partial norms of these coupling functions quantify directed coupling between oscillators. We illustrate the method by different network motifs for three coupled oscillators and for random networks of five and nine units. We also discuss nonlinear effects in coupling. Y1 - 2011 U6 - https://doi.org/10.1063/1.3597647 SN - 1054-1500 VL - 21 IS - 2 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Glebov, Sergei A1 - Kiselev, Oleg A1 - Tarkhanov, Nikolai Nikolaevich T1 - Forced nonlinear resonance in a system of coupled oscillators JF - Chaos : an interdisciplinary journal of nonlinear science N2 - We consider a resonantly perturbed system of coupled nonlinear oscillators with small dissipation and outer periodic perturbation. We show that for the large time t similar to s(-2) one component of the system is described for the most part by the inhomogeneous Mathieu equation while the other component represents pulsation of large amplitude. A Hamiltonian system is obtained which describes for the most part the behavior of the envelope in a special case. The analytic results agree with numerical simulations. Y1 - 2011 U6 - https://doi.org/10.1063/1.3578047 SN - 1054-1500 VL - 21 IS - 2 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Förster, M. A1 - Namgaladze, Alexander A. A1 - Doronina, E. N. A1 - Prokhorov, Boris E. T1 - High-latitude thermospheric winds: Satellite data and model calculations JF - Russian journal of physical chemistry : B, Focus on physics N2 - The thermospheric crosswind velocities at an altitude of 400 km measured by an accelerometer on board of the CHAMP satellite are compared with the results of model calculations performed using the Upper Atmosphere Model (UAM). The results of measurements averaged over the year in 2003 reveal a two-vortex structure of high-latitude winds corresponding to magnetospheric-ionospheric convection of ions in the F2 ionosphere region. A similar picture with similar speed values was obtained in model calculations. A comparison of the crosswind speed obtained in individual measurements on October 28, 2003 with the corresponding model values revealed close agreement between them in some flights and differences in others. Taking into account the dependence of convection electric field on the B (y) component of interplanetary magnetic field sometimes improved agreement between thermospheric crosswind speeds obtained in model calculations and measured using the satellite. KW - CHAMP satellite KW - upper atmosphere model KW - thermospheric wind KW - ionospheric convection Y1 - 2011 U6 - https://doi.org/10.1134/S1990793111030043 SN - 1990-7931 VL - 5 IS - 3 SP - 439 EP - 446 PB - Pleiades Publ. CY - New York ER - TY - JOUR A1 - Zolotov, O. V. A1 - Prokhorov, Boris E. A1 - Namgaladze, Alexander A. A1 - Martynenko, O. V. T1 - Variations in the total electron content of the ionosphere during preparation of earthquakes JF - Russian journal of physical chemistry : B, Focus on physics N2 - The morphological features in the deviations of the total electron content (TEC) of the ionosphere from the background undisturbed state as possible precursors of the earthquake of January 12, 2010 (21:53 UT (16:53 LT), 18.46A degrees N, 72.5A degrees W, 7.0 M) in Haiti are analyzed. To identify these features, global and regional differential TEC maps based on global 2-h TEC maps provided by NASA in the IONEX format were plotted. For the considered earthquake, long-lived disturbances, presumably of seismic origin, were localized in the near-epicenter area and were accompanied by similar effects in the magnetoconjugate region. Both decreases and increases in the local TEC over the period from 22 UT of January 10 to 08 UT of January 12, 2010 were observed. The horizontal dimensions of the anomalies were similar to 40A degrees in longitude and similar to 20A degrees in latitude, with the magnitude of TEC disturbances reaching similar to 40% relative to the background near the epicenter and more than 50% in the magnetoconjugate area. No significant geomagnetic disturbances within January 1-12, 2010 were observed, i.e., the detected TEC anomalies were manifestations of interplay between processes in the lithosphere-atmosphere-ionosphere system. KW - TEC KW - ionospheric precursors of earthquakes KW - GPS Y1 - 2011 U6 - https://doi.org/10.1134/S1990793111030146 SN - 1990-7931 VL - 5 IS - 3 SP - 435 EP - 438 PB - Pleiades Publ. CY - New York ER - TY - JOUR A1 - Worseck, Gabor A1 - Prochaska, J. Xavier A1 - McQuinn, Matthew A1 - Dall'Aglio, Aldo A1 - Fechner, Cora A1 - Hennawi, Joseph F. A1 - Reimers, Dieter A1 - Richter, Philipp A1 - Wisotzki, Lutz T1 - The end of Helium Reionization at z similar or equal to 2.7 Inferred from cosmic variance in HST/COS He II Ly alpha Absorption spectra JF - The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters N2 - We report on the detection of strongly varying intergalactic He II absorption in HST/COS spectra of two z(em) similar or equal to 3 quasars. From our homogeneous analysis of the He II absorption in these and three archival sightlines, we find a marked increase in the mean He II effective optical depth from similar or equal to 1 at z similar or equal to 2.3 to greater than or similar to 5 at z similar or equal to 3.2, but with a large scatter of 2 less than or similar to tau(eff, He II) less than or similar to 5 at 2.7 < z < 3 on scales of similar to 10 proper Mpc. This scatter is primarily due to fluctuations in the He II fraction and the He II-ionizing background, rather than density variations that are probed by the coeval Hi forest. Semianalytic models of He II absorption require a strong decrease in the He II-ionizing background to explain the strong increase of the absorption at z greater than or similar to 2.7, probably indicating He II reionization was incomplete at z(reion) greater than or similar to 2.7. Likewise, recent three-dimensional numerical simulations of He II reionization qualitatively agree with the observed trend only if He II reionization completes at z(reion) similar or equal to 2.7 or even below, as suggested by a large tau(eff, He II) greater than or similar to 3 in two of our five sightlines at z < 2.8. By doubling the sample size at 2.7 less than or similar to z less than or similar to 3, our newly discovered He II sightlines for the first time probe the diversity of the second epoch of reionization when helium became fully ionized. KW - dark ages, reionization, first stars KW - diffuse radiation KW - intergalactic medium KW - quasars: absorption lines KW - quasars: individual (SDSS J092447.36+485242.8, SDSS J110155.74+105302.3) Y1 - 2011 U6 - https://doi.org/10.1088/2041-8205/733/2/L24 SN - 2041-8205 VL - 733 IS - 2 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Weskott, Thomas A1 - Fanselow, Gisbert T1 - On the informativity of different measures of linguistic acceptability JF - Language : journal of the Linguistic Society of America N2 - This article deals with the claim that the MAGNITUDE ESTIMATION (ME) method of gathering acceptability judgments produces data that are more informative for linguists than binary or n-point scale judgments. We performed three acceptability-rating experiments that directly compared ME data to binary and seven-point scale data. The results clearly falsify the hypothesis that data gathered by the ME method carry a larger amount of information about the acceptability of a given linguistic phenomenon. The three measures are largely equivalent with respect to informativity. Moreover, ME judgments are shown to be more liable to producing spurious variance under certain circumstances.* KW - acceptability judgments KW - empirical syntax KW - magnitude estimation KW - informativity Y1 - 2011 SN - 0097-8507 VL - 87 IS - 2 SP - 249 EP - 273 PB - Linguistic Society of America CY - Washington ER - TY - JOUR A1 - Schmidt, Hans-Jürgen T1 - Perihelion advance for orbits with large eccentricities in the Schwarzschild black hole JF - Physical review : D, Particles, fields, gravitation, and cosmology N2 - We deduce a new formula for the perihelion advance Theta of a test particle in the Schwarzschild black hole by applying a newly developed nonlinear transformation within the Schwarzschild space-time. By this transformation we are able to apply the well-known formula valid in the weak-field approximation near infinity also to trajectories in the strong-field regime near the horizon of the black hole. The resulting formula has the structure Theta = c(1) - c(2) ln(c(3)(2) - e(2)) with positive constants c(1,2,3) depending on the angular momentum of the test particle. It is especially useful for orbits with large eccentricities e < c(3) < 1 showing that Theta -> infinity as e -> c(3). Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevD.83.124010 SN - 1550-7998 VL - 83 IS - 12 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Kolocouris, Antonios A1 - Zervos, Nikolaos A1 - De Proft, Frank A1 - Koch, Andreas T1 - Improper Hydrogen Bonded Cyclohexane C-H-ax center dot center dot center dot Y-ax Contacts theoretical predictions and experimental Evidence from H-1 NMR Spectroscopy of Suitable Axial Cyclohexane Models JF - The journal of organic chemistry N2 - C-H-ax center dot center dot center dot Y-ax are a textbook prototype of steric hindrance in organic chemistry. The nature of these contacts is investigated in this work. MP2/6-31+G(d,p) calculations predicted the presence of improper hydrogen bonded C-H-ax center dot center dot center dot Y-ax of different strength in substituted cyclohexane rings. To support the theoretical predictions with experimental evidence, several synthetic 2-substituted adamantane analogues (1-24) with suitable improper H-bonded C-H-ax center dot center dot center dot Y-ax contacts of different strength were used as models of a substituted cyclohexane ring. The H-1 NMR signal separation, Delta delta(gamma-CH2), within the cyclohexane ring gamma-CH(2)s is raised when the MP2/6-31+G(d,p) calculated parameters, reflecting the strength of the H-bonded C-H-ax center dot center dot center dot Y-ax contact, are increased. In molecules with enhanced improper H-bonded contacts C-H-ax center dot center dot center dot Y-ax, like those having sterically crowded contacts (Y-ax = t-Bu) or contacts including considerable electrostatic attractions (Y-ax = O-C or O=C) the calculated DFT steric energies of the gamma-axial hydrogens are considerably reduced reflecting their electron cloud compression. The results suggest that the proton H-ax electron cloud compression, caused by the C-H-ax center dot center dot center dot Y-ax contacts, and the resulting increase in Delta delta(gamma-CH2) value can be effected not just from van der Waals spheres compression, but more generally from electrostatic attraction forces and van der Waals repulsion, both of which are improper H-bonding components. Y1 - 2011 U6 - https://doi.org/10.1021/jo102353f SN - 0022-3263 VL - 76 IS - 11 SP - 4432 EP - 4443 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Jelicic, Aleksandra A1 - Yasin, Muttaqin A1 - Beuermann, Sabine T1 - Toward the description and prediction of solvent induced variations in Methacrylate Propagation Rate Coefficients on the basis of Solvatochromic Parameters JF - Macromolecular reaction engineering N2 - Benzyl methacrylate (BzMA) propagation rate coefficients, k(p), were determined in ionic liquids and common organic solvents via pulsed-laser polymerizations with subsequent polymer analysis by size-exclusion chromatography (PLP-SEC). The aim of the work is to gain a deeper understanding of the solvent influence on k(p) and to develop a general correlation between solvent-induced variations in k(p) and solvent properties. Applying a linear solvation energy relationship (LSER), which correlates k(p) to solvent solvatochromic parameters, suggests that dipolarity/polarizability determines the solvent influence on k(p). To compare the solvent influence on BzMA k(p) with data for methyl methacrylate, hydroxypropyl methacrylate, and 2-ethoxyethyl methacrylate normalized k(p) data were treated by a single LSER, providing a universal treatment of the solvent influence on the propagation kinetics of the four monomers. Further, the predictive capabilities of this universal correlation were tested with additional monomers from the methacrylate family. KW - ionic liquid KW - kinetics (polym.) KW - radical polymerization KW - solvent influence Y1 - 2011 U6 - https://doi.org/10.1002/mren.201000058 SN - 1862-832X VL - 5 IS - 5-6 SP - 232 EP - 242 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Abdo, A. A. A1 - Ackermann, Margit A1 - Ajello, M. A1 - Allafort, A. J. A1 - Baldini, L. A1 - Ballet, J. A1 - Barbiellini, G. A1 - Baring, M. G. A1 - Bastieri, D. A1 - Bellazzini, R. A1 - Berenji, B. A1 - Blandford, R. D. A1 - Bloom, E. D. A1 - Bonamente, E. A1 - Borgland, A. W. A1 - Bouvier, A. A1 - Brandt, T. J. A1 - Bregeon, Johan A1 - Brigida, M. A1 - Bruel, P. A1 - Buehler, R. A1 - Buson, S. A1 - Caliandro, G. A. A1 - Cameron, R. A. A1 - Caraveo, P. A. A1 - Casandjian, J. M. A1 - Cecchi, C. A1 - Chaty, S. A1 - Chekhtman, A. A1 - Cheung, C. C. A1 - Chiang, J. A1 - Cillis, A. N. A1 - Ciprini, S. A1 - Claus, R. A1 - Cohen-Tanugi, J. A1 - Conrad, Jan A1 - Corbel, S. A1 - Cutini, S. A1 - de Angelis, A. A1 - de Palma, F. A1 - Dermer, C. D. A1 - Digel, S. W. A1 - do Couto e Silva, E. A1 - Drell, P. S. A1 - Drlica-Wagner, A. A1 - Dubois, R. A1 - Dumora, D. A1 - Favuzzi, C. A1 - Ferrara, E. C. A1 - Fortin, P. A1 - Frailis, M. A1 - Fukazawa, Y. A1 - Fukui, Y. A1 - Funk, S. A1 - Fusco, P. A1 - Gargano, F. A1 - Gasparrini, D. A1 - Gehrels, N. A1 - Germani, S. A1 - Giglietto, N. A1 - Giordano, F. A1 - Giroletti, M. A1 - Glanzman, T. A1 - Godfrey, G. A1 - Grenier, I. A. A1 - Grondin, M. -H. A1 - Guiriec, S. A1 - Hadasch, D. A1 - Hanabata, Y. A1 - Harding, A. K. A1 - Hayashida, M. A1 - Hayashi, K. A1 - Hays, E. A1 - Horan, D. A1 - Jackson, M. S. A1 - Johannesson, G. A1 - Johnson, A. S. A1 - Kamae, T. A1 - Katagiri, H. A1 - Kataoka, J. A1 - Kerr, M. A1 - Knoedlseder, J. A1 - Kuss, M. A1 - Lande, J. A1 - Latronico, L. A1 - Lee, S. -H. A1 - Lemoine-Goumard, M. A1 - Longo, F. A1 - Loparco, F. A1 - Lovellette, M. N. A1 - Lubrano, P. A1 - Madejski, G. M. A1 - Makeev, A. A1 - Mazziotta, Mario Nicola A1 - McEnery, J. E. A1 - Michelson, P. F. A1 - Mignani, R. P. A1 - Mitthumsiri, W. A1 - Mizuno, T. A1 - Moiseev, A. A. A1 - Monte, C. A1 - Monzani, M. E. A1 - Morselli, A. A1 - Moskalenko, I. V. A1 - Murgia, S. A1 - Naumann-Godo, M. A1 - Nolan, P. L. A1 - Norris, J. P. A1 - Nuss, E. A1 - Ohsugi, T. A1 - Okumura, A. A1 - Orlando, E. A1 - Ormes, J. F. A1 - Paneque, D. A1 - Parent, D. A1 - Pelassa, V. A1 - Pesce-Rollins, M. A1 - Pierbattista, M. A1 - Piron, F. A1 - Pohl, Martin A1 - Porter, T. A. A1 - Raino, S. A1 - Rando, R. A1 - Razzano, M. A1 - Reimer, O. A1 - Reposeur, T. A1 - Ritz, S. A1 - Romani, R. W. A1 - Roth, M. A1 - Sadrozinski, H. F. -W. A1 - Parkinson, P. M. Saz A1 - Sgro, C. A1 - Smith, D. A. A1 - Smith, P. D. A1 - Spandre, G. A1 - Spinelli, P. A1 - Strickman, M. S. A1 - Tajima, H. A1 - Takahashi, H. A1 - Takahashi, T. A1 - Tanaka, T. A1 - Thayer, J. G. A1 - Thayer, J. B. A1 - Thompson, D. J. A1 - Tibaldo, L. A1 - Tibolla, O. A1 - Torres, D. F. A1 - Tosti, G. A1 - Tramacere, A. A1 - Troja, E. A1 - Uchiyama, Y. A1 - Vandenbroucke, J. A1 - Vasileiou, V. A1 - Vianello, G. A1 - Vilchez, N. A1 - Vitale, V. A1 - Waite, A. P. A1 - Wang, P. A1 - Winer, B. L. A1 - Wood, K. S. A1 - Yamamoto, H. A1 - Yamazaki, R. A1 - Yang, Z. A1 - Ziegler, M. T1 - Observations of the young supernova remnant RX J1713.7-3946 with the fermi large area telescope JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - We present observations of the young supernova remnant (SNR) RX J1713.7-3946 with the Fermi Large Area Telescope (LAT). We clearly detect a source positionally coincident with the SNR. The source is extended with a best-fit extension of 0 degrees.55 +/- 0 degrees.04 matching the size of the non-thermal X-ray and TeV gamma-ray emission from the remnant. The positional coincidence and the matching extended emission allow us to identify the LAT source with SNR RX J1713.7-3946. The spectrum of the source can be described by a very hard power law with a photon index of Gamma = 1.5 +/- 0.1 that coincides in normalization with the steeper H. E. S. S.-detected gamma-ray spectrum at higher energies. The broadband gamma-ray emission is consistent with a leptonic origin as the dominant mechanism for the gamma-ray emission. KW - acceleration of particles KW - gamma rays: general KW - gamma rays: ISM KW - ISM: individual objects (RX J1713.7-3946) KW - ISM: supernova remnants KW - radiation mechanisms: non-thermal Y1 - 2011 U6 - https://doi.org/10.1088/0004-637X/734/1/28 SN - 0004-637X VL - 734 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Brandao, F. G. S. L. A1 - Eisert, Jens A1 - Horodecki, M. A1 - Yang, Dong T1 - Entangled inputs cannot make imperfect quantum channels perfect JF - Physical review letters N2 - Entangled inputs can enhance the capacity of quantum channels, this being one of the consequences of the celebrated result showing the nonadditivity of several quantities relevant for quantum information science. In this work, we answer the converse question (whether entangled inputs can ever render noisy quantum channels to have maximum capacity) to the negative: No sophisticated entangled input of any quantum channel can ever enhance the capacity to the maximum possible value, a result that holds true for all channels both for the classical as well as the quantum capacity. This result can hence be seen as a bound as to how "nonadditive quantum information can be.'' As a main result, we find first practical and remarkably simple computable single-shot bounds to capacities, related to entanglement measures. As examples, we discuss the qubit amplitude damping and identify the first meaningful bound for its classical capacity. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevLett.106.230502 SN - 0031-9007 VL - 106 IS - 23 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Janotta, Peter A1 - Gogolin, Christian A1 - Barrett, Jonathan A1 - Brunner, Nicolas T1 - Limits on nonlocal correlations from the structure of the local state space JF - New journal of physics : the open-access journal for physics N2 - The outcomes of measurements on entangled quantum systems can be nonlocally correlated. However, while it is easy to write down toy theories allowing arbitrary nonlocal correlations, those allowed in quantum mechanics are limited. Quantum correlations cannot, for example, violate a principle known as macroscopic locality, which implies that they cannot violate Tsirelson's bound. This paper shows that there is a connection between the strength of nonlocal correlations in a physical theory and the structure of the state spaces of individual systems. This is illustrated by a family of models in which local state spaces are regular polygons, where a natural analogue of a maximally entangled state of two systems exists. We characterize the nonlocal correlations obtainable from such states. The family allows us to study the transition between classical, quantum and super-quantum correlations by varying only the local state space. We show that the strength of nonlocal correlations-in particular whether the maximally entangled state violates Tsirelson's bound or not-depends crucially on a simple geometric property of the local state space, known as strong self-duality. This result is seen to be a special case of a general theorem, which states that a broad class of entangled states in probabilistic theories-including, by extension, all bipartite classical and quantum states-cannot violate macroscopic locality. Finally, our results show that models exist that are locally almost indistinguishable from quantum mechanics, but can nevertheless generate maximally nonlocal correlations. Y1 - 2011 U6 - https://doi.org/10.1088/1367-2630/13/6/063024 SN - 1367-2630 VL - 13 IS - 23 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Scherler, Dirk A1 - Bookhagen, Bodo A1 - Strecker, Manfred T1 - Hillslope-glacier coupling the interplay of topography and glacial dynamics in High Asia JF - Journal of geophysical research : Earth surface N2 - High Asian glacial landscapes have large variations in topographic relief and the size and steepness of snow accumulation areas. Associated differences in glacial cover and dynamics allow a first-order determination of the dominant processes shaping these landscapes. Here we provide a regional synthesis of the topography and flow characteristics of 287 glaciers across High Asia using digital elevation analysis and remotely sensed glacier surface velocities. Glaciers situated in low-relief areas on the Tibetan Plateau are mainly nourished by direct snowfall, have little or no debris cover, and have a relatively symmetrical distribution of velocities along their length. In contrast, avalanche-fed glaciers with steep accumulation areas, which occur at the deeply incised edges of the Tibetan Plateau, are heavily covered with supraglacial debris, and flow velocities are highest along short segments near their headwalls but greatly reduced along their debris-mantled lower parts. The downstream distribution of flow velocities suggests that the glacial erosion potential is progressively shifted upstream as accumulation areas get steeper and hillslope debris fluxes increase. Our data suggest that the coupling of hillslopes and glacial dynamics increases with topographic steepness and debris cover. The melt-lowering effect of thick debris cover allows the existence of glaciers even when they are located entirely below the snow line. However, slow velocities limit the erosion potential of such glaciers, and their main landscape-shaping contribution may simply be the evacuation of debris from the base of glacial headwalls, which inhibits the formation of scree slopes and thereby allows ongoing headwall retreat by periglacial hillslope processes. We propose a conceptual model in which glacially influenced plateau margins evolve from low-relief to high-relief landscapes with distinctive contributions of hillslope processes and glaciers to relief production and decay. Y1 - 2011 U6 - https://doi.org/10.1029/2010JF001751 SN - 0148-0227 VL - 116 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Juma, Wanyama P. A1 - Akala, Hoseah M. A1 - Eyase, Fredrick L. A1 - Muiva, Lois M. A1 - Heydenreich, Matthias A1 - Okalebo, Faith A. A1 - Gitu, Peter M. A1 - Peter, Martin G. A1 - Walsh, Douglas S. A1 - Imbuga, Mabel A1 - Yenesew, Abiy T1 - Terpurinflavone an antiplasmodial flavone from the stem of Tephrosia Purpurea JF - Phytochemistry letters N2 - The stem extract of Tephrosia purpurea showed antiplasmodial activity against the D6 (chloroquine-sensitive) and W2 (chloroquine-resistant) strains of Plasmodium falciparum with IC(50) values of 10.47 +/- 2.22 mu g/ml and 12.06 +/- 2.54 mu g/ml, respectively. A new prenylated flavone, named terpurinflavone, along with the known compounds lanceolatin A, (-)-semiglabrin and lanceolatin B have been isolated from this extract. The new compound, terpurinflavone, showed the highest antiplasmodial activity with IC(50) values of 3.12 +/- 0.28 mu M (D6) and 6.26 +/- 2.66 mu M (W2). The structures were determined on the basis of spectroscopic evidence. KW - Tephrosia purpurea KW - Leguminosae KW - Stem KW - Flavone KW - Terpurinflavone KW - Antiplasmodial Y1 - 2011 U6 - https://doi.org/10.1016/j.phytol.2011.02.010 SN - 1874-3900 VL - 4 IS - 2 SP - 176 EP - 178 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Reusser, Dominik Edwin A1 - Zehe, Erwin T1 - Low-cost monitoring of snow height and thermal properties with inexpensive temperature sensors JF - Hydrological processes N2 - Small, self-recording temperature sensors were installed at several heights along a metal rod at five locations in a case study catchment. For each sensor, the presence or absence of snow cover was determined on the basis of its insulating effect and the resulting reduction of the diurnal temperature oscillations. Sensor coverage was then converted into a time series of snow height for each location. Additionally, cold content was calculated. Snow height and cold content provide valuable information for spring flood prediction. Good agreement of estimated snow heights with reference measurements was achieved and increased discharge in the study catchment coincided with low cold content of the snow cover. The results of the proposed distributed assessment of snow cover and snow state show great potential for (i) flood warning, (ii) assimilation of snow state data and (iii) modelling snowmelt process. KW - snow measurements KW - cold content KW - temperature index approach KW - heat diffusion KW - temperature Y1 - 2011 U6 - https://doi.org/10.1002/hyp.7937 SN - 0885-6087 SN - 1099-1085 VL - 25 IS - 12 SP - 1841 EP - 1852 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Navirian, Hengameh A. A1 - Herzog, Marc A1 - Goldshteyn, J. A1 - Leitenberger, Wolfram A1 - Vrejoiu, Ionella A1 - Khakhulin, D. A1 - Wulff, M. A1 - Shayduk, Roman A1 - Gaal, P. A1 - Bargheer, Matias T1 - Shortening x-ray pulses for pump-probe experiments at synchrotrons JF - Journal of applied physics N2 - We implemented an experimental scheme for ultrafast x-ray diffraction at storage rings based on a laser-driven Bragg-switch that shortens the x-ray pulses emitted from an undulator. The increased time-resolution is demonstrated by observing changes of intensity, position and width of the diffraction peaks of a La(0.7)Sr(0.3)MnO(3)/SrTiO(3) superlattice sample after optical excitation, i.e., by quantitatively measuring the propagation of an expansion wave through the sample. These experimental transients with timescales of 35 to 60 ps evidence a reduction of the x-ray pulse duration by a factor of two. Y1 - 2011 U6 - https://doi.org/10.1063/1.3601057 SN - 0021-8979 VL - 109 IS - 12 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - David, Laszlo A1 - Marashi, Sayed-Amir A1 - Larhlimi, Abdelhalim A1 - Mieth, Bettina A1 - Bockmayr, Alexander T1 - FFCA a feasibility-based method for flux coupling analysis of metabolic networks JF - BMC bioinformatics N2 - Background: Flux coupling analysis (FCA) is a useful method for finding dependencies between fluxes of a metabolic network at steady-state. FCA classifies reactions into subsets (called coupled reaction sets) in which activity of one reaction implies activity of another reaction. Several approaches for FCA have been proposed in the literature. Results: We introduce a new FCA algorithm, FFCA (Feasibility-based Flux Coupling Analysis), which is based on checking the feasibility of a system of linear inequalities. We show on a set of benchmarks that for genome-scale networks FFCA is faster than other existing FCA methods. Conclusions: We present FFCA as a new method for flux coupling analysis and prove it to be faster than existing approaches. A corresponding software tool is freely available for non-commercial use at http://www.bioinformatics.org/ffca/. Y1 - 2011 U6 - https://doi.org/10.1186/1471-2105-12-236 SN - 1471-2105 VL - 12 IS - 12 PB - BioMed Central CY - London ER - TY - JOUR A1 - Kar, Parimal A1 - Lipowsky, Reinhard A1 - Knecht, Volker T1 - Importance of polar solvation for cross-reactivity of antibody and its variants with steroids JF - The journal of physical chemistry : B, Condensed matter, materials, surfaces, interfaces & biophysical chemistry N2 - Understanding the factors determining the binding of ligands to receptors in detail is essential for rational drug design. Here, the free energies of binding of the steroids progesterone (PRG) and 5 beta-androstane-3,17-dione (SAD) to the Diels-Alderase antibody 1E9, as well as the Leu(H47)Trp/Arg(H100)Trp 1E9 double mutant (1E9dm) and the corresponding single mutants, have been estimated and decomposed using the molecular mechanics-Poisson-Boltzmann surface area (MM-PBSA) method. Also the difference in binding free energies between the PRG-1E9dm complex and the complex of PRG with the antiprogesterone antibody DB3 have been evaluated and decomposed. The steroids bind less strongly to 1E9 than to DB3, but the mutations tend to improve the steroid affinity, in quantitative agreement with experimental data. Although the complexes formed by PRG or SAD with 1E9dm and by PRG with DB3 have similar affinity, the binding mechanisms are different. Reduced Waals for SAD-1E9dm versus PRG-1E9dm or for PRG-1E9dm versus PRG-DB3 are energetically compensated by an increased solvation of polar groups, partly contrasting previous conclusions based on structural inspection. Our study illustrates that deducing binding mechanisms from structural models alone can be misleading. Therefore, taking into account solvation effects as in MM-PBSA calculations is essential to elucidate molecular recognition. Y1 - 2011 U6 - https://doi.org/10.1021/jp201538t SN - 1520-6106 VL - 115 IS - 23 SP - 7661 EP - 7669 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Heistermann, Maik A1 - Kneis, David T1 - Benchmarking quantitative precipitation estimation by conceptual rainfall-runoff modeling JF - Water resources research N2 - Hydrologic modelers often need to know which method of quantitative precipitation estimation (QPE) is best suited for a particular catchment. Traditionally, QPE methods are verified and benchmarked against independent rain gauge observations. However, the lack of spatial representativeness limits the value of such a procedure. Alternatively, one could drive a hydrological model with different QPE products and choose the one which best reproduces observed runoff. Unfortunately, the calibration of conceptual model parameters might conceal actual differences between the QPEs. To avoid such effects, we abandoned the idea of determining optimum parameter sets for all QPE being compared. Instead, we carry out a large number of runoff simulations, confronting each QPE with a common set of random parameters. By evaluating the goodness-of-fit of all simulations, we obtain information on whether the quality of competing QPE methods is significantly different. This knowledge is inferred exactly at the scale of interest-the catchment scale. We use synthetic data to investigate the ability of this procedure to distinguish a truly superior QPE from an inferior one. We find that the procedure is prone to failure in the case of linear systems. However, we show evidence that in realistic (nonlinear) settings, the method can provide useful results even in the presence of moderate errors in model structure and streamflow observations. In a real-world case study on a small mountainous catchment, we demonstrate the ability of the verification procedure to reveal additional insights as compared to a conventional cross validation approach. Y1 - 2011 U6 - https://doi.org/10.1029/2010WR009153 SN - 0043-1397 VL - 47 IS - 23 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Hocher, Berthold A1 - Heiden, S. A1 - von Websky, Karoline A1 - Rahnenführer, Jörg A1 - Kalk, Philipp A1 - Pfab, T. T1 - Dual endothelin-converting enzyme/neutral endopeptidase blockade in rats with D-galactosamine-induced liver failure JF - European journal of medical research : official organ "Deutsche AIDS-Gesellschaft" N2 - Secondary activation of the endothelin system is thought to be involved in toxic liver injury. This study tested the hypothesis that dual endothelin-converting enzyme / neutral endopeptidase blockade might: be able to attenuate acute toxic liver injury. Male Sprague-Dawley rats were implanted with subcutaneous minipumps to deliver the novel compound SLV338 (10 mg/kg*d) or vehicle. Four days later they received two intraperitoneal injections of D-galactosamine (1.3 g/kg each) or vehicle at an interval of 12 hours. The animals were sacrificed 48 hours after the first injection. Injection of D-galactosamine resulted in very severe liver injury, reflected by strongly elevated plasma liver enzymes, hepatic necrosis and inflammation, and a mortality rate of 42.9 %. SLV338 treatment did not show any significant effect on the extent of acute liver injury as judged from plasma parameters, hepatic histology and mortality. Plasma measurements of SLV338 confirmed adequate drug delivery. Plasma concentrations of big endothelin-1 and endothelin-1 were significantly elevated in animals with liver injury (5-fold and 62-fold, respectively). Plasma endothelin-1 was significantly correlated with several markers of liver injury. SLV338 completely prevented the rise of plasma big endothelin-1 (p<0.05) and markedly attenuated the rise of endothelin-1 (p = 0.055). In conclusion, dual endothelin-converting enzyme / neutral endopeptidase blockade by SLV338 did not significantly attenuate D-galactosamine-induced acute liver injury, although it largely prevented the activation of the endothelin system. An evaluation of SLV338 in a less severe model of liver injury would be of interest, since very severe intoxication might not be relevantly amenable to pharmacological interventions. KW - endothelin KW - endothelin-converting enzyme KW - neutral endopeptidase KW - D-galactosamine KW - acute liver failure Y1 - 2011 SN - 0949-2321 VL - 16 IS - 6 SP - 275 EP - 279 PB - Med. Scientific Publ. Holzapfel CY - München ER - TY - JOUR A1 - Franck, Siegfried A1 - von Bloh, Werner A1 - Müller, Christoph A1 - Bondeau, Alberte A1 - Sakschewski, B. T1 - Harvesting the sun new estimations of the maximum population of planet Earth JF - Ecological modelling : international journal on ecological modelling and engineering and systems ecolog N2 - The maximum population, also called Earth's carrying capacity, is the maximum number of people that can live on the food and other resources available on planet Earth. Previous investigations estimated the maximum carrying capacity as large as about 1 trillion people under the assumption that photosynthesis is the limiting process. Here we use a present state-of-the-art dynamic global vegetation model with managed planetary land surface, Lund-Potsdam-Jena managed Land (LPJmL), to calculate the yields of the most productive crops on a global 0.5 degrees x 0.5 degrees grid. Using the 2005 crop distribution the model predicts total harvested calories that are sufficient for the nutrition of 11.4 billion people. We define scenarios where humankind uses the whole land area for agriculture, saves the rain forests and the boreal evergreen forests or cultivates only pasture to feed animals. Every scenario is run in an extreme version with no allowance for urban and recreational needs and in two soft versions with a certain area per person for non-agricultural use. We find that there are natural limits of the maximum carrying capacity which are independent of any increase in agricultural productivity, if non-agricultural land use is accounted for. Using all land planet Earth can sustain 282 billion people. The save-forests-scenario yields 150 billion people. The scenario that cultivates only pasture to feed animals yields 96 billion people. Nevertheless, we should always have in mind that all our calculated numbers for the carrying capacity refer to extreme scenarios where humankind may only vegetate on this planet. Our numbers are considerably higher than the general median estimate of upper bounds of human population found in the literature in the order of 10 billion. KW - Maximum population KW - Human carrying capacity KW - Photosynthesis KW - Dynamical global vegetation model Y1 - 2011 U6 - https://doi.org/10.1016/j.ecolmodel.2011.03.030 SN - 0304-3800 VL - 222 IS - 12 SP - 2019 EP - 2026 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Ehlert, C. A1 - Frank, M. A1 - Haley, B. A. A1 - Boeniger, Urs A1 - De Deckker, P. A1 - Gingele, F. X. T1 - Current transport versus continental inputs in the eastern Indian Ocean Radiogenic isotope signatures of clay size sediments JF - Geochemistry, geophysics, geosystems N2 - Analyses of radiogenic neodymium (Nd), strontium (Sr), and lead (Pb) isotope compositions of clay-sized detrital sediments allow detailed tracing of source areas of sediment supply and present and past transport of particles by water masses in the eastern Indian Ocean. Isotope signatures in surface sediments range from -21.5 (epsilon Nd), 0.8299 ((87)Sr/(86S)r), and 19.89 ((206)Pb/(204)Pb) off northwest Australia to + 0.7 (epsilon Nd), 0.7069 ((87)Sr/(86)Sr), and 17.44 ((206)Pb/(204)Pb) southwest of Java. The radiogenic isotope signatures primarily reflect petrographic characteristics of the surrounding continental bedrocks but are also influenced by weathering-induced grain size effects of Pb and Sr isotope systems with superimposed features that are caused by current transport of clay-sized particles, as evidenced off Australia where a peculiar isotopic signature characterizes sediments underlying the southward flowing Leeuwin Current and the northward flowing West Australian Current (WAC). Gravity core FR10/95-GC17 off west Australia recorded a major isotopic change from Last Glacial Maximum values of -10 (epsilon Nd), 0.745 ((87S)r/(86)Sr), and 18.8 ((206)Pb/(204)Pb) to Holocene values of -22 (epsilon Nd), 0.8 ((87)Sr/(86)Sr), and 19.3 ((206)Pb/(204)Pb), which documents major climatically driven changes of the WAC and in local riverine particle supply from Australia during the past 20 kyr. In contrast, gravity core FR10/95-GC5 located below the present-day pathway of the Indonesian throughflow (ITF) shows a much smaller isotopic variability, indicating a relatively stable ITF hydrography over most of the past 92 kyr. Only the surface sediments differ significantly in their isotopic composition, indicating substantial changes in erosional sources attributed to a change of the current regime during the past 5 kyr. KW - Indonesian throughflow KW - Leeuwin Current KW - clay sediments KW - past circulation KW - radiogenic isotopes KW - weathering inputs Y1 - 2011 U6 - https://doi.org/10.1029/2011GC003544 SN - 1525-2027 VL - 12 IS - 12 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Hintersberger, Esther A1 - Thiede, Rasmus Christoph A1 - Strecker, Manfred T1 - The role of extension during brittle deformation within the NW Indian Himalaya JF - Tectonics N2 - Synorogenic extension has been recognized as an integral structural constituent of mountain belts and high-elevation plateaus during their evolution. In the Himalaya, both orogen-parallel and orogen-normal extension has been recognized. However, the underlying driving forces for extension and their timing are still a matter of debate. Here we present new fault kinematic data based on systematic measurements of hundreds of outcrop-scale brittle fault planes in the NW Indian Himalaya. This new data set, as well as field observations including crosscutting relationships, mineral fibers on fault planes, and correlations with deformation structures in lake sediments, allows us to distinguish different deformation styles. The overall strain pattern derived from our data reflects the large regional contractional deformation pattern very well but also reveals significant extensional deformation in a region, which is dominated by shortening. In total, we were able to identify six deformation styles, most of which are temporally and spatially linked, representing protracted shortening. Our observations also furnish the basis for a detailed overview of the younger deformation history in the NW Himalaya, which has been characterized by extension overprinting previously generated structures related to shortening. The four dominant deformation styles are (1) shortening parallel to the regional convergence direction; (2) arc-normal extension; (3) arc-parallel extension; and finally, (4) E-W extension. This is the first data set where a succession of both arc-normal and E-W extension has been documented in the Himalaya. Importantly, our observations help differentiate E-W extension triggered by processes within the Tibetan Plateau from arc-parallel and arc-normal extension originating from the curvature of the Himalayan orogen. Y1 - 2011 U6 - https://doi.org/10.1029/2010TC002822 SN - 0278-7407 VL - 30 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Postberg, Frank A1 - Schmidt, J. A1 - Hillier, J. A1 - Kempf, Sascha A1 - Srama, Ralf T1 - A salt-water reservoir as the source of a compositionally stratified plume on Enceladus JF - Nature : the international weekly journal of science N2 - The discovery of a plume of water vapour and ice particles emerging from warm fractures ('tiger stripes') in Saturn's small, icy moon Enceladus(1-6) raised the question of whether the plume emerges from a subsurface liquid source(6-8) or from the decomposition of ice(9-12). Previous compositional analyses of particles injected by the plume into Saturn's diffuse E ring have already indicated the presence of liquid water(8), but the mechanisms driving the plume emission are still debated(13). Here we report an analysis of the composition of freshly ejected particles close to the sources. Salt-rich ice particles are found to dominate the total mass flux of ejected solids (more than 99 per cent) but they are depleted in the population escaping into Saturn's E ring. Ice grains containing organic compounds are found to be more abundant in dense parts of the plume. Whereas previous Cassini observations were compatible with a variety of plume formation mechanisms, these data eliminate or severely constrain non-liquid models and strongly imply that a salt-water reservoir with a large evaporating surface(7,8) provides nearly all of the matter in the plume. Y1 - 2011 U6 - https://doi.org/10.1038/nature10175 SN - 0028-0836 VL - 474 IS - 7353 SP - 620 EP - 622 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Dortay, Hakan A1 - Schmöckel, Sandra M. A1 - Fettke, Jörg A1 - Müller-Röber, Bernd T1 - Expression of human c-reactive protein in different systems and its purification from Leishmania tarentolae JF - Protein expression and purification N2 - With its homo-pentameric structure and calcium-dependent specificity for phosphocholine (PCh), human c-reactive protein (CRP) is produced by the liver and secreted in elevated quantities in response to inflammation. CRP is widely accepted as a cardiac marker, e.g. in point-of-care diagnostics, however, its heterologous expression has proven difficult. Here, we demonstrate the expression of CRP in different Escherichia coli strains as well as by in vitro transcription/translation. Although expression in these systems was straightforward, most of the protein that accumulated was insoluble. We therefore expanded our study to include the expression of CRP in two eukaryotic hosts, namely the yeast Kluyveromyces lactis and the protozoon Leishmania tarentolae. Both expression systems are optimized for secretion of recombinant proteins and here allowed successful expression of soluble CRP. We also demonstrate the purification of recombinant CRP from Leishmania growth medium; the purification of protein expressed from K. lactis was not successful. Functional and intact CRP pentamer is known to interact with PCh in Ca(2+)-dependent manner. In this report we verify the binding specificity of recombinant CRP from L tarentolae (2 mu g/mL culture medium) for PCh. KW - C-reactive protein KW - Protein expression KW - Leishmania KW - In vitro expression KW - Protein purification Y1 - 2011 U6 - https://doi.org/10.1016/j.pep.2011.03.010 SN - 1046-5928 VL - 78 IS - 1 SP - 55 EP - 60 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Rossi, Sonja A1 - Jürgenson, Ina B. A1 - Hanulikova, Adriana A1 - Telkemeyer, Silke A1 - Wartenburger, Isabell A1 - Obrig, Hellmuth T1 - Implicit processing of phonotactic cues evidence from electrophysiological and vascular responses JF - Journal of cognitive neuroscience N2 - Spoken word recognition is achieved via competition between activated lexical candidates that match the incoming speech input. The competition is modulated by prelexical cues that are important for segmenting the auditory speech stream into linguistic units. One such prelexical cue that listeners rely on in spoken word recognition is phonotactics. Phonotactics defines possible combinations of phonemes within syllables or words in a given language. The present study aimed at investigating both temporal and topographical aspects of the neuronal correlates of phonotactic processing by simultaneously applying ERPs and functional near-infrared spectroscopy (fNIRS). Pseudowords, either phonotactically legal or illegal with respect to the participants' native language, were acoustically presented to passively listening adult native German speakers. ERPs showed a larger N400 effect for phonotactically legal compared to illegal pseudowords, suggesting stronger lexical activation mechanisms in phonotactically legal material. fNIRS revealed a left hemispheric network including fronto-temporal regions with greater response to phonotactically legal pseudowords than to illegal pseudowords. This confirms earlier hypotheses on a left hemispheric dominance of phonotactic processing most likely due to the fact that phonotactics is related to phonological processing and represents a segmental feature of language comprehension. These segmental linguistic properties of a stimulus are predominantly processed in the left hemisphere. Thus, our study provides first insights into temporal and topographical characteristics of phonotactic processing mechanisms in a passive listening task. Differential brain responses between known and unknown phonotactic rules thus supply evidence for an implicit use of phonotactic cues to guide lexical activation mechanisms. Y1 - 2011 U6 - https://doi.org/10.1162/jocn.2010.21547 SN - 0898-929X VL - 23 IS - 7 SP - 1752 EP - 1764 PB - MIT Press CY - Cambridge ER - TY - JOUR A1 - Wiederkehr, Michael A1 - Bousquet, Romain A1 - Ziemann, Martin Andreas A1 - Berger, Alfons A1 - Schmid, Stefan M. T1 - 3-D assessment of peak-metamorphic conditions by Raman spectroscopy of carbonaceous material an example from the margin of the Lepontine dome (Swiss Central Alps) JF - International journal of earth sciences N2 - This study monitors regional changes in the crystallinity of carbonaceous matter (CM) by applying Micro-Raman spectroscopy to a total of 214 metasediment samples (largely so-called Bundnerschiefer) dominantly metamorphosed under blueschist- to amphibolite-facies conditions. They were collected within the northeastern margin of the Lepontine dome and easterly adjacent areas of the Swiss Central Alps. Three-dimensional mapping of isotemperature contours in map and profile views shows that the isotemperature contours associated with the Miocene Barrow-type Lepontine metamorphic event cut across refolded nappe contacts, both along and across strike within the northeastern margin of the Lepontine dome and adjacent areas. Further to the northeast, the isotemperature contours reflect temperatures reached during the Late Eocene subduction-related blueschist-facies event and/or during subsequent near-isothermal decompression; these contours appear folded by younger, large-scale post-nappe-stacking folds. A substantial jump in the recorded maximum temperatures across the tectonic contact between the frontal Adula nappe complex and surrounding metasediments indicates that this contact accommodated differential tectonic movement of the Adula nappe with respect to the enveloping Bundnerschiefer after maximum temperatures were reached within the northern Adula nappe, i.e. after Late Eocene time. KW - HP-metamorphism KW - Barrovian metamorphism KW - Graphitization KW - Metasediments KW - Micro-Raman spectroscopy KW - Central Alps Y1 - 2011 U6 - https://doi.org/10.1007/s00531-010-0622-2 SN - 1437-3254 VL - 100 IS - 5 SP - 1029 EP - 1063 PB - Springer CY - New York ER - TY - JOUR A1 - Loprieno, Andrea A1 - Bousquet, Romain A1 - Bucher, Stefan A1 - Ceriani, Stefano A1 - Dalla Torre, Florian H. A1 - Fügenschuh, Bernhard A1 - Schmid, Stefan M. T1 - The valais units in Savoy (France) a key area for understanding the palaeogeography and the tectonic evolution of the Western Alps JF - International journal of earth sciences N2 - The Valais units in Savoy (Zone des BrSches de Tarentaise) have been re-mapped in great detail and are subject of combined stratigraphic, structural and petrological investigations summarized in this contribution. The sediments and rare relics of basement, together with Cretaceous age mafic and ultramafic rocks of the Valais palaeogeographical domain, represent the heavily deformed relics of the former distal European margin (External Valais units) and an ocean-continent transition (Internal Valais unit or Versoyen unit) that formed during rifting. This rifting led to the opening of the Valais ocean, a northern branch of the Alpine Tethys. Post-rift sediments referred to as "Valais trilogy" stratigraphically overlie both External and Internal Valais successions above an angular unconformity formed in Barremian to Aptian times, providing robust evidence for the timing of the opening of the Valais ocean. The Valais units in Savoy are part of a second and more external mid-Eocene high-pressure belt in the Alps that sutured the Brian double dagger onnais microcontinent to Europe. Top-N D1-deformation led to the formation of a nappe stack that emplaced the largely eclogite-facies Internal Valais unit (Versoyen) onto blueschist-facies External Valais units. The latter originally consisted of, from internal to external, the Petit St. Bernard unit, the Roc de l'Enfer unit, the MoA >> tiers unit and the Quermoz unit. Ongoing top-N D2-thrusting and folding substantially modified this nappe stack. Post 35 Ma D3 folding led to relatively minor modifications of the nappe stack within the Valais units but was associated with substantial top-WNW thrusting of the Valais units over the Dauphinois units along the Roselend thrust during W-directed indentation of the Adria block contributing to the formation of the arc of the Western Alps. KW - Alpine geology KW - Valais ocean KW - Palaeogeography KW - Structural geology KW - Tectonics KW - Metamorphism Y1 - 2011 U6 - https://doi.org/10.1007/s00531-010-0595-1 SN - 1437-3254 VL - 100 IS - 5 SP - 963 EP - 992 PB - Springer CY - New York ER - TY - JOUR A1 - Popova, Antoaneta V. A1 - Hundertmark, Michaela A1 - Seckler, Robert A1 - Hincha, Dirk K. T1 - Structural transitions in the intrinsically disordered plant dehydration stress protein LEA7 upon drying are modulated by the presence of membranes JF - Biochimica et biophysica acta : Biomembranes N2 - Dehydration stress-related late embryogenesis abundant (LEA) proteins have been found in plants, invertebrates and bacteria. Most LEA proteins are unstructured in solution, but some fold into amphipathic a-helices during drying. The Pfam LEA_4 (Group 3) protein LEA7 from the higher plant Arabidopsis thaliana was predicted to be 87% alpha-helical, while CD spectroscopy showed it to be largely unstructured in solution and only 35% alpha-helical in the dry state. However, the dry protein contained 15% beta-sheets. FTIR spectroscopy revealed the (beta-sheets to be largely due to aggregation. beta-Sheet content was reduced and alpha-helix content increased when LEA7 was dried in the presence of liposomes with secondary structure apparently influenced by lipid composition. Secondary structure was also affected by the presence of membranes in the fully hydrated state. A temperature-induced increase in the flexibility of the dry protein was also only observed in the presence of membranes. Functional interactions of LEA7 with membranes in the dry state were indicated by its influence on the thermotropic phase transitions of the lipids and interactions with the lipid headgroup phosphates. KW - Desiccation KW - CD spectroscopy KW - FTIR spectroscopy KW - LEA protein KW - Protein-membrane interactions KW - Protein secondary structure Y1 - 2011 U6 - https://doi.org/10.1016/j.bbamem.2011.03.009 SN - 0005-2736 VL - 1808 IS - 7 SP - 1879 EP - 1887 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Kocyan, Alexander A1 - Snijman, Deirdre A. A1 - Forest, Felix A1 - Devey, Dion S. A1 - Freudenstein, John V. A1 - Wiland-Szymanska, Justyna A1 - Chase, Mark W. A1 - Rudall, Paula J. T1 - Molecular phylogenetics of Hypoxidaceae - Evidence from plastid DNA data and inferences on morphology and biogeography JF - Molecular phylogenetics and evolution N2 - Phylogenetic relationships of the monocot family Hypoxidaceae (Asparagales), which occurs mainly in the Southern Hemisphere, were reconstructed using four plastid DNA regions (rbcL, trnL intron, trnL-F intergenic spacer, and trnS-G intergenic spacer) for 56 ingroup taxa including all currently accepted genera and seven species of the closely related families Asteliaceae, Blandfordiaceae, and Lanariaceae. Data were analyzed by applying parsimony, maximum likelihood and Bayesian methods. The intergenic spacer trnS-G - only rarely used in monocot research - contributed a substantial number of potentially parsimony informative characters. Hypoxidaceae consist of three well-supported major clades, but their interrelationships remain unresolved. Our data indicate that in the Pauridia clade one long-distance dispersal event occurred from southern Africa to Australia. Long-distance dispersal scenarios may also be likely for the current distribution of Hypoxis, which occurs on four continents. In the Curculigo clade, the present distribution of Curculigo s.s. on four continents could support a Gondwanan origin, but the level of divergence is too low for this hypothesis to be likely. The main clades correspond well with some floral characters, habit and palynological data, whereas chromosomal data exhibit plasticity and probably result from polyploidization and subsequent dysploidy and/or aneuploidy. Evolutionary flexibility is also suggested by the number of reported pollination syndromes: melittophily, myophily, sapromyophily, and cantharophily. Based on our phylogenetic results, we suggest cautious nomenclatural reorganization to generate monophyly at the generic level. KW - Asparagales KW - Phylogenetics KW - Biogeography KW - Character evolution KW - Pollination syndromes KW - trnS-G spacer Y1 - 2011 U6 - https://doi.org/10.1016/j.ympev.2011.02.021 SN - 1055-7903 VL - 60 IS - 1 SP - 122 EP - 136 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Baumgärtel, Hellmut T1 - A Characteristic decay semigroup for the resonances of trace class perturbations with analyticity conditions of semibounded hamiltonians JF - International journal of theoretical physic N2 - To asymptotic complete scattering systems {M(+) + V, M(+)} on H(+) := L(2)(R(+), K, d lambda), where M(+) is the multiplication operator on H(+) and V is a trace class operator with analyticity conditions, a decay semigroup is associated such that the spectrum of the generator of this semigroup coincides with the set of all resonances (poles of the analytic continuation of the scattering matrix into the lower half plane across the positive half line), i.e. the decay semigroup yields a "time-dependent" characterization of the resonances. As a counterpart a "spectral characterization" is mentioned which is due to the "eigenvalue-like" properties of resonances. KW - Resonances KW - Scattering theory KW - Lax-Phillips theory KW - Decay semigroups Y1 - 2011 U6 - https://doi.org/10.1007/s10773-010-0533-9 SN - 0020-7748 VL - 50 IS - 7 SP - 2002 EP - 2008 PB - Springer CY - New York ER - TY - JOUR A1 - Dornhof, Sarah T1 - Regimes of visibility representing violence against women in the French banlieue JF - Feminist review N2 - Recent discussions about violence against women have shifted their attention to specific forms of violence in relation to migration and Islam. In this article, I consider different modes of representing women's experiences in French immigrant communities. These representations relate to the French feminist movement Ni Putes Ni Soumises (neither whore nor submissive), a movement that in the early 2000s deplored both the sustained degradation of certain banlieue neighborhoods and also the charges and restrictions that this entails, particularly for young women. Drawing on different narratives and images of women's painful experience, I consider, in a first step, how the question of representing violence against (post) migrant women is framed in terms of the tension between universality and particularity within French republicanism. In the next part of my argument, I bring into focus the question of how to access women's suffering. For a perspective on pain not as an interiorized, private experience but as an accessible complex of practices, articulations, memories, visions and social reconfigurations, I consider Smain Laacher's sociological study (2008) about written testimonies of violent experience that had been addressed by (post) migrant women to French women organizations such as Ni Putes Ni Soumises. I finally suggest reading women's accounts on violence not in relation to a universal discourse of rights, but as a political contestation of the naturalized order of representing violence, suffering and agency inside French banlieue communities. Drawing on Jacques Ranciere's notion of dissensus, such a contestation can be staged through words by those who have no visibility in the representational order, words not to criticize the unaccomplished ideals of universal equality, but to create a universal community and a common language of experience in the mode of 'as-if'. KW - visibility KW - pain KW - violence against women KW - dissensus Y1 - 2011 U6 - https://doi.org/10.1057/fr.2011.2 SN - 0141-7789 IS - 98 SP - 110 EP - 127 PB - Palgrave Macmillan CY - Basingstoke ER - TY - JOUR A1 - Schröder, Florian A1 - Lisso, Janina A1 - Muessig, Carsten T1 - Exordium-Like1 promotes growth during low carbon availability in arabidopsis JF - Plant physiology : an international journal devoted to physiology, biochemistry, cellular and molecular biology, biophysics and environmental biology of plants N2 - Little is known about genes that control growth and development under low carbon (C) availability. The Arabidopsis (Arabidopsis thaliana) EXORDIUM-LIKE1 (EXL1) gene (At1g35140) was identified as a brassinosteroid-regulated gene in a previous study. We show here that the EXL1 protein is required for adaptation to C-and energy-limiting growth conditions. In-depth analysis of EXL1 transcript levels under various environmental conditions indicated that EXL1 expression is controlled by the C and energy status. Sugar starvation, extended night, and anoxia stress induced EXL1 gene expression. The C status also determined EXL1 protein levels. These results suggested that EXL1 is involved in the C-starvation response. Phenotypic changes of an exl1 loss-of-function mutant became evident only under corresponding experimental conditions. The mutant showed diminished biomass production in a short-day/low-light growth regime, impaired survival during extended night, and impaired survival of anoxia stress. Basic metabolic processes and signaling pathways are presumed to be barely impaired in exl1, because the mutant showed wild-type levels of major sugars, and transcript levels of only a few genes such as QUA-QUINE STARCH were altered. Our data suggest that EXL1 is part of a regulatory pathway that controls growth and development when C and energy supply is poor. Y1 - 2011 U6 - https://doi.org/10.1104/pp.111.177204 SN - 0032-0889 VL - 156 IS - 3 SP - 1620 EP - 1630 PB - American Society of Plant Physiologists CY - Rockville ER - TY - JOUR A1 - Flad, Heinz-Jürgen A1 - Harutyunyan, Gohar A1 - Schneider, Reinhold A1 - Schulze, Bert-Wolfgang T1 - Explicit Green operators for quantum mechanical Hamiltonians BT - I. The hydrogen atom JF - Manuscripta mathematica N2 - We study a new approach to determine the asymptotic behaviour of quantum many-particle systems near coalescence points of particles which interact via singular Coulomb potentials. This problem is of fundamental interest in electronic structure theory in order to establish accurate and efficient models for numerical simulations. Within our approach, coalescence points of particles are treated as embedded geometric singularities in the configuration space of electrons. Based on a general singular pseudo-differential calculus, we provide a recursive scheme for the calculation of the parametrix and corresponding Green operator of a nonrelativistic Hamiltonian. In our singular calculus, the Green operator encodes all the asymptotic information of the eigenfunctions. Explicit calculations and an asymptotic representation for the Green operator of the hydrogen atom and isoelectronic ions are presented. Y1 - 2011 U6 - https://doi.org/10.1007/s00229-011-0429-x SN - 0025-2611 VL - 135 IS - 3-4 SP - 497 EP - 519 PB - Springer CY - New York ER - TY - JOUR A1 - Henkel, Janin A1 - Gärtner, Daniela A1 - Dorn, Christoph A1 - Hellerbrand, Claus A1 - Schanze, Nancy A1 - Elz, Sheila R. A1 - Püschel, Gerhard Paul T1 - Oncostatin M produced in Kupffer cells in response to PGE(2) possible contributor to hepatic insulin resistance and steatosis JF - Laboratory investigation : the basic and translational pathology research journal ; an official journal of the United States and Canadian Academy of Pathology N2 - Hepatic insulin resistance is a major contributor to hyperglycemia in metabolic syndrome and type II diabetes. It is caused in part by the low-grade inflammation that accompanies both diseases, leading to elevated local and circulating levels of cytokines and cyclooxygenase (COX) products such as prostaglandin E-2 (PGE(2)). In a recent study, PGE(2) produced in Kupffer cells attenuated insulin-dependent glucose utilization by interrupting the intracellular signal chain downstream of the insulin receptor in hepatocytes. In addition to directly affecting insulin signaling in hepatocytes, PGE(2) in the liver might affect insulin resistance by modulating cytokine production in non-parenchymal cells. In accordance with this hypothesis, PGE(2) stimulated oncostatin M (OSM) production by Kupffer cells. OSM in turn attenuated insulin-dependent Akt activation and, as a downstream target, glucokinase induction in hepatocytes, most likely by inducing suppressor of cytokine signaling 3 (SOCS3). In addition, it inhibited the expression of key enzymes of hepatic lipid metabolism. COX-2 and OSM mRNA were induced early in the course of the development of non-alcoholic steatohepatitis (NASH) in mice. Thus, induction of OSM production in Kupffer cells by an autocrine PGE(2)-dependent feed-forward loop may be an additional, thus far unrecognized, mechanism contributing to hepatic insulin resistance and the development of NASH. KW - cyclooxygenase KW - cytokine KW - hepatic steatosis KW - NASH KW - suppressor of cytokine signaling (SOCS) KW - type II diabetes (T2DM) Y1 - 2011 U6 - https://doi.org/10.1038/labinvest.2011.47 SN - 0023-6837 VL - 91 IS - 7 SP - 1107 EP - 1117 PB - Nature Publ. Group CY - New York ER - TY - JOUR A1 - Bog, Anja A1 - Plattner, Hasso A1 - Zeier, Alexander T1 - A mixed transaction processing and operational reporting benchmark JF - Information systems frontiers N2 - The importance of reporting is ever increasing in today's fast-paced market environments and the availability of up-to-date information for reporting has become indispensable. Current reporting systems are separated from the online transaction processing systems (OLTP) with periodic updates pushed in. A pre-defined and aggregated subset of the OLTP data, however, does not provide the flexibility, detail, and timeliness needed for today's operational reporting. As technology advances, this separation has to be re-evaluated and means to study and evaluate new trends in data storage management have to be provided. This article proposes a benchmark for combined OLTP and operational reporting, providing means to evaluate the performance of enterprise data management systems for mixed workloads of OLTP and operational reporting queries. Such systems offer up-to-date information and the flexibility of the entire data set for reporting. We describe how the benchmark provokes the conflicts that are the reason for separating the two workloads on different systems. In this article, we introduce the concepts, logical data schema, transactions and queries of the benchmark, which are entirely based on the original data sets and real workloads of existing, globally operating enterprises. KW - Benchmarking KW - Mixed workload KW - OLTP KW - Operational reporting Y1 - 2011 U6 - https://doi.org/10.1007/s10796-010-9283-8 SN - 1387-3326 VL - 13 IS - 3 SP - 321 EP - 335 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Ette, Ottmar T1 - Urbanity and literature - cities as transareal spaces of movement in Assia Djebar, Emine Sevgi Ozdamar and Cecile Wajsbrot JF - European review : interdisciplinary journal of the humanities and sciences of the Academia Europea N2 - Transarea studies focus upon spaces as created by the movements that criss-cross them. From this point of view, from its very beginnings, literature is closely interrelated with a vectorial (and much less with a purely spatial) conception of history - and with urbanity, which plays a decisive role in Gilgamesh's travels through a (narrative) cosmos centered upon the city of Uruk. This article explores the city as a transareal space of movement in three examples of literature, with no fixed abode, around the turn of the millennium, i.e. Assia Djebar's Les Nuits de Strasbourg, Emine Sevgi Oezdamar's Istanbul-Berlin Trilogy, and Cecile Wajsbrot's L'ile aux musees. These three writers project, in a very specific way, cities in motion as anagrammatic and fractal structures. Y1 - 2011 U6 - https://doi.org/10.1017/S106279871100010X SN - 1062-7987 VL - 19 IS - 3 SP - 367 EP - 383 PB - Cambridge Univ. Press CY - Cambridge ER - TY - JOUR A1 - Held, Katrin A1 - Pascaud, Francois A1 - Eckert, Christian A1 - Gajdanowicz, Pawel A1 - Hashimoto, Kenji A1 - Corratge-Faillie, Claire A1 - Offenborn, Jan Niklas A1 - Lacombe, Benoit A1 - Dreyer, Ingo A1 - Thibaud, Jean-Baptiste A1 - Kudla, Jörg T1 - Calcium-dependent modulation and plasma membrane targeting of the AKT2 potassium channel by the CBL4/CIPK6 calcium sensor/protein kinase complex JF - Cell research N2 - Potassium (K(+)) channel function is fundamental to many physiological processes. However, components and mechanisms regulating the activity of plant K(+) channels remain poorly understood. Here, we show that the calcium (Ca(2+)) sensor CBL4 together with the interacting protein kinase CIPK6 modulates the activity and plasma membrane (PM) targeting of the K(+) channel AKT2 from Arabidopsis thaliana by mediating translocation of AKT2 to the PM in plant cells and enhancing AKT2 activity in oocytes. Accordingly, akt2, cbl4 and cipk6 mutants share similar developmental and delayed flowering phenotypes. Moreover, the isolated regulatory C-terminal domain of CIPK6 is sufficient for mediating CBL4- and Ca(2+)-dependent channel translocation from the endoplasmic reticulum membrane to the PM by a novel targeting pathway that is dependent on dual lipid modifications of CBL4 by myristoylation and palmitoylation. Thus, we describe a critical mechanism of ion-channel regulation where a Ca(2+) sensor modulates K(+) channel activity by promoting a kinase interaction-dependent but phosphorylation-independent translocation of the channel to the PM. KW - calcium sensor KW - protein kinase KW - potassium channel KW - signal transduction Y1 - 2011 U6 - https://doi.org/10.1038/cr.2011.50 SN - 1001-0602 VL - 21 IS - 7 SP - 1116 EP - 1130 PB - Nature Publ. Group CY - Shanghai ER - TY - JOUR A1 - Schudoma, Christian A1 - Larhlimi, Abdelhalim A1 - Walther, Dirk T1 - The influence of the local sequence environment on RNA loop structures JF - RNA : a publication of the RNA Society N2 - RNA folding is assumed to be a hierarchical process. The secondary structure of an RNA molecule, signified by base-pairing and stacking interactions between the paired bases, is formed first. Subsequently, the RNA molecule adopts an energetically favorable three-dimensional conformation in the structural space determined mainly by the rotational degrees of freedom associated with the backbone of regions of unpaired nucleotides (loops). To what extent the backbone conformation of RNA loops also results from interactions within the local sequence context or rather follows global optimization constraints alone has not been addressed yet. Because the majority of base stacking interactions are exerted locally, a critical influence of local sequence on local structure appears plausible. Thus, local loop structure ought to be predictable, at least in part, from the local sequence context alone. To test this hypothesis, we used Random Forests on a nonredundant data set of unpaired nucleotides extracted from 97 X-ray structures from the Protein Data Bank (PDB) to predict discrete backbone angle conformations given by the discretized eta/theta-pseudo-torsional space. Predictions on balanced sets with four to six conformational classes using local sequence information yielded average accuracies of up to 55%, thus significantly better than expected by chance (17%-25%). Bases close to the central nucleotide appear to be most tightly linked to its conformation. Our results suggest that RNA loop structure does not only depend on long-range base-pairing interactions; instead, it appears that local sequence context exerts a significant influence on the formation of the local loop structure. KW - RNA KW - 3D structure KW - structure prediction KW - Random Forests KW - machine learning KW - backbone conformation Y1 - 2011 U6 - https://doi.org/10.1261/rna.2550211 SN - 1355-8382 VL - 17 IS - 7 SP - 1247 EP - 1257 PB - Cold Spring Harbor Laboratory Press CY - Cold Spring Harbor, NY ER - TY - JOUR A1 - Lauterbach, Dirk A1 - Ristow, Michael A1 - Gemeinholzer, B. T1 - Genetic population structure, fitness variation and the importance of population history in remnant populations of the endangered plant Silene chlorantha (Willd.) Ehrh. (Caryophyllaceae) JF - Plant biology N2 - Habitat fragmentation can lead to a decline of genetic diversity, a potential risk for the survival of natural populations. Fragmented populations can become highly differentiated due to reduced gene flow and genetic drift. A decline in number of individuals can result in lower reproductive fitness due to inbreeding effects. We investigated genetic variation within and between 11 populations of the rare and endangered plant Silene chlorantha in northeastern Germany to support conservation strategies. Genetic diversity was evaluated using AFLP techniques and the results were correlated to fitness traits. Fitness evaluation in nature and in a common garden approach was conducted. Our analysis revealed population differentiation was high and within population genetic diversity was intermediate. A clear population structure was supported by a Bayesian approach, AMOVA and neighbour-joining analysis. No correlation between genetic and geographic distance was found. Our results indicate that patterns of population differentiation were mainly caused by temporal and/or spatial isolation and genetic drift. The fitness evaluation revealed that pollinator limitation and habitat quality seem, at present, to be more important to reproductive fitness than genetic diversity by itself. Populations of S. chlorantha with low genetic diversity have the potential to increase in individual number if habitat conditions improve. This was detected in a single large population in the investigation area, which was formerly affected by bottleneck effects. KW - AFLP KW - fitness KW - population genetic structure KW - population history Y1 - 2011 U6 - https://doi.org/10.1111/j.1438-8677.2010.00418.x SN - 1435-8603 VL - 13 IS - 4 SP - 667 EP - 677 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Kotkova, Jana A1 - O'Brien, Patrick J. A1 - Ziemann, Martin Andreas T1 - Diamond and coesite discovered in Saxony-type granulite solution to the Variscan garnet peridotite enigma JF - Geology N2 - The pressures required for diamond and coesite formation far exceed conditions reached by even the deepest present-day orogenic crustal roots. Therefore the occurrence of metamorphosed continental crust containing these minerals requires processes other than crustal thickening to have operated in the past. Here we report the first in situ finding of diamond and coesite, characterized by micro-Raman spectroscopy, in high-pressure granulites otherwise indistinguishable from granulites found associated with garnet peridotite throughout the European Variscides. Our discovery confirms the provenance of Europe's first reliable diamond, the "Bohemian diamond," found in A.D. 1870, and also represents the first robust evidence for ultrahigh-pressure conditions in a major Variscan crustal rock type. A process of deep continental subduction is required to explain the metamorphic pressures and the granulite-garnet peridotite association, and thus tectonometamorphic models for these rocks involving a deep orogenic crustal root need to be significantly modified. Y1 - 2011 U6 - https://doi.org/10.1130/G31971.1 SN - 0091-7613 VL - 39 IS - 7 SP - 667 EP - 670 PB - American Institute of Physics CY - Boulder ER - TY - JOUR A1 - McCoy, Ellen A1 - Syska, Norbert A1 - Plath, Martin A1 - Schlupp, Ingo A1 - Riesch, Rüdiger T1 - Mustached males in a tropical poeciliid fish - emerging female preference selects for a novel male trait JF - Behavioral ecology and sociobiology N2 - One possible mechanism for the (co-)evolution of seemingly novel male traits and female preferences for them is that males exploit pre-existing female biases, and livebearing fishes (Poeciliidae) have been at the forefront of this research for almost two decades. Here, using 13 poeciliid species from four different genera, we tested whether mustache-like rostral filaments found in males of some Mexican molly (Poecilia sphenops) populations could have evolved due to exploitation of a pre-existing female bias. While Mexican mollies were the only species with a significant female association preference for mustached males, we also did not find any species exhibiting significant aversion for mustached males; rather, variance in female preference scores was large throughout. For example, more than 25% of females spent twice as much time with the mustached male compared to the non-mustached male in most species, but even 31% of Mexican molly females spent more time near the non-mustached male. Hence, a comparison of the strength of preference was inconclusive. We discuss the possibility that the female preference of P. sphenops for mustached males could be due to a female pre-existing bias (sensu lato), even if population means were not significant for species other than P. sphenops. This highlights the importance of distinguishing between population means and individual preferences when interpreting mate choice, and thus, adds depth to the concept of mating preferences as a motor for evolutionary change. KW - Female choice KW - Mate preferences KW - Pre-existing bias KW - Sexual selection KW - Character mapping Y1 - 2011 U6 - https://doi.org/10.1007/s00265-011-1154-x SN - 0340-5443 VL - 65 IS - 7 SP - 1437 EP - 1445 PB - Springer CY - New York ER - TY - JOUR A1 - Pihlaja, Kalevi A1 - Sinkkonen, Jari A1 - Stajer, Geza A1 - Koch, Andreas A1 - Kleinpeter, Erich T1 - 1-Oxo-1,3-dithiolanes - synthesis and stereochemistry JF - Magnetic resonance in chemistry N2 - 1-Oxo-1,3-dithiolane (4) and its cis- and trans-2-methyl (5,6), -4-methyl (7,8) and -5-methyl (9,10) derivatives were prepared by oxidizing the corresponding 1,3-dithiolanes (1-3) with NaIO(4) in water. The oxides were purified and their isomers separated using thin layer chromatography. The structural characterization was carried out with (1)H and (13)C NMR spectroscopy and molecular modelling. The sulfoxides 4-6 and 8-10 attain two S(1) type envelopes (sometimes slightly distorted) the S=O(ax) envelope greatly dominating. Cis-4-methyl-1-oxo-1,3-dithiolane is a special case exhibiting both two closely related S=O(ax) (30 and 27%) as well as S=O(eq) (21 and 22%) forms [S(1) and C(4) envelopes, respectively]. The relative energies of these conformations, the values of (1)H-(1)H coupling constants and (1)H and (13)C chemical shifts were estimated by computational methods and they support well the conclusions based on the experimental data. KW - NMR KW - (1)H NMR KW - (13)C NMR KW - sulfur heterocycles KW - conformational analysis KW - computational chemistry Y1 - 2011 U6 - https://doi.org/10.1002/mrc.2764 SN - 0749-1581 VL - 49 IS - 7 SP - 443 EP - 449 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Höhenwarter, Wolfgang A1 - Larhlimi, Abdelhalim A1 - Hummel, Jan A1 - Egelhofer, Volker A1 - Selbig, Joachim A1 - van Dongen, Joost T. A1 - Wienkoop, Stefanie A1 - Weckwerth, Wolfram T1 - MAPA Distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber JF - Journal of proteome research N2 - Mass Accuracy Precursor Alignment is a fast and flexible method for comparative proteome analysis that allows the comparison of unprecedented numbers of shotgun proteomics analyses on a personal computer in a matter of hours. We compared 183 LC-MS analyses and more than 2 million MS/MS spectra and could define and separate the proteomic phenotypes of field grown tubers of 12 tetraploid cultivars of the crop plant Solanum tuberosum. Protein isoforms of patatin as well as other major gene families such as lipoxygenase and cysteine protease inhibitor that regulate tuber development were found to be the primary source of variability between the cultivars. This suggests that differentially expressed protein isoforms modulate genotype specific tuber development and the plant phenotype. We properly assigned the measured abundance of tryptic peptides to different protein isoforms that share extensive stretches of primary structure and thus inferred their abundance. Peptides unique to different protein isoforms were used to classify the remaining peptides assigned to the entire subset of isoforms based on a common abundance profile using multivariate statistical procedures. We identified nearly 4000,proteins which we used for quantitative functional annotation making this the most extensive study of the tuber proteome to date. KW - comparative proteomics KW - mass accuracy KW - protein isoforms KW - potato tuber KW - lipoxygenase KW - protease inhibitor KW - phenotype KW - genetic variability Y1 - 2011 U6 - https://doi.org/10.1021/pr101109a SN - 1535-3893 VL - 10 IS - 7 SP - 2979 EP - 2991 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Itonaga, Naomi A1 - Köppen, Ulrich A1 - Plath, Martin A1 - Wallschläger, Hans-Dieter T1 - Declines in breeding site fidelity in an increasing population of White Storks Ciconia ciconia JF - IBIS N2 - Following a steep decline, White Stork Ciconia ciconia populations in Germany are currently increasing, allowing us to examine potential density-dependent effects on breeding dispersal. Our data suggest that the proportion of breeding dispersers has increased over time, indicating a density-dependent component in nest-site fidelity that may be linked to increased competition. KW - age-dependent dispersal KW - density-dependent dispersal KW - population dynamics Y1 - 2011 SN - 0019-1019 VL - 153 IS - 3 SP - 636 EP - 639 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Gebser, Martin A1 - Kaminski, Roland A1 - Schaub, Torsten T1 - Complex optimization in answer set programming JF - Theory and practice of logic programming N2 - Preference handling and optimization are indispensable means for addressing nontrivial applications in Answer Set Programming (ASP). However, their implementation becomes difficult whenever they bring about a significant increase in computational complexity. As a consequence, existing ASP systems do not offer complex optimization capacities, supporting, for instance, inclusion-based minimization or Pareto efficiency. Rather, such complex criteria are typically addressed by resorting to dedicated modeling techniques, like saturation. Unlike the ease of common ASP modeling, however, these techniques are rather involved and hardly usable by ASP laymen. We address this problem by developing a general implementation technique by means of meta-prpogramming, thus reusing existing ASP systems to capture various forms of qualitative preferences among answer sets. In this way, complex preferences and optimization capacities become readily available for ASP applications. KW - Answer Set Programming KW - Preference Handling KW - Complex optimization KW - Meta-Programming Y1 - 2011 U6 - https://doi.org/10.1017/S1471068411000329 SN - 1471-0684 VL - 11 IS - 3 SP - 821 EP - 839 PB - Cambridge Univ. Press CY - New York ER - TY - JOUR A1 - Durzinsky, Markus A1 - Marwan, Wolfgang A1 - Ostrowski, Max A1 - Schaub, Torsten A1 - Wagler, Annegret T1 - Automatic network reconstruction using ASP JF - Theory and practice of logic programming N2 - Building biological models by inferring functional dependencies from experimental data is an important issue in Molecular Biology. To relieve the biologist from this traditionally manual process, various approaches have been proposed to increase the degree of automation. However, available approaches often yield a single model only, rely on specific assumptions, and/or use dedicated, heuristic algorithms that are intolerant to changing circumstances or requirements in the view of the rapid progress made in Biotechnology. Our aim is to provide a declarative solution to the problem by appeal to Answer Set Programming (ASP) overcoming these difficulties. We build upon an existing approach to Automatic Network Reconstruction proposed by part of the authors. This approach has firm mathematical foundations and is well suited for ASP due to its combinatorial flavor providing a characterization of all models explaining a set of experiments. The usage of ASP has several benefits over the existing heuristic algorithms. First, it is declarative and thus transparent for biological experts. Second, it is elaboration tolerant and thus allows for an easy exploration and incorporation of biological constraints. Third, it allows for exploring the entire space of possible models. Finally, our approach offers an excellent performance, matching existing, special-purpose systems. Y1 - 2011 U6 - https://doi.org/10.1017/S1471068411000287 SN - 1471-0684 VL - 11 SP - 749 EP - 766 PB - Cambridge Univ. Press CY - New York ER - TY - JOUR A1 - Krentz, Eva M. A1 - Warschburger, Petra T1 - Sports-related correlates of disordered eating in aesthetic sports JF - Psychology of sport and exercise : PSE ; an official journal of the European Federation of Sport Psychology N2 - Objectives: Eating disorders are more prevalent in aesthetic sports such as figure skating or gymnastics. While many descriptive studies on their prevalence already exist, more and more studies are now examining the reasons for the specific risk of these athletes. The purpose of this study was to focus on sport-specific variables in aesthetic sports and to examine their relation to disordered eating. Design: Cross-sectional. Method: 96 Elite athletes from aesthetic sports (61 girls, 35 boys) were compared to a control group of 96 sex-matched non-athletes. The mean age of participants was M = 14.0 years (SD = 2.2). The questionnaire package included disordered eating, general body dissatisfaction, sports-related body dissatisfaction, desire to be leaner to improve sports performance and social pressure to be lean from sports environment. Results: Athletes from aesthetic sports displayed more eating disorder symptoms but did not differ from the control group with respect to general body dissatisfaction. For athletes in aesthetic sports, the desire to be leaner to improve sports performance was a significant predictor for disordered eating, and mediated the relationship between social pressure from the sports environment and disordered eating. Conclusions: The results suggest that sports-related parameters are relevant for understanding eating disorder symptomatology in aesthetic sports. Athletes from aesthetic sports seem to be more at risk if they perceive the possibility to enhance sports performance through weight-regulation, which appears to be triggered by social pressure to be lean from sports environment. KW - Eating disorder KW - Body dissatisfaction KW - Elite athlete KW - Adolescent KW - Sport Y1 - 2011 U6 - https://doi.org/10.1016/j.psychsport.2011.03.004 SN - 1469-0292 VL - 12 IS - 4 SP - 375 EP - 382 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Schmidt, Alexander A1 - Mezger, Klaus A1 - O'Brien, Patrick J. T1 - The time of eclogite formation in the ultrahigh pressure rocks of the Sulu terrane Constraints from Lu-Hf garnet geochronology JF - Lithos : an international journal of mineralogy, petrology, and geochemistry N2 - Eclogites from the main borehole of the Chinese Continental Scientific Drilling project yield highly precise Lu-Hf garnet-clinopyroxene ages of 216.9 +/- 1.2 Ma (four samples) and 220.5 +/- 2.7 Ma (one sample). The spatial distribution of the rare earth elements in garnet is consistent with the preservation of primary growth zoning, unmodified by diffusion, which supports the interpretation that the Lu-Hf ages date the time of formation of garnet, the major rock forming mineral in the eclogites. The preservation of primary REE-zoning, despite peak metamorphic temperatures around 800-850 degrees C. indicates that the Lu-Hf chronometer is perfectly suitable to date garnet-forming reactions in high grade rocks. The range of Lu-Hf ages for eclogites in the Dabie-Sulu UHP terrane point to episodic rather than continuous growth of garnets and thus punctuated metamorphism during the collision of the North China Block and the Yangtze Block. The U-Pb ages and Hf-isotope systematics of zircon grains from one eclogite sample imply a protracted geologic history of the eclogite precursors that started around 2 Ga and culminated in the UHP metamorphism around 220 Ma. KW - Lu-Hf KW - Eclogite KW - Garnet KW - Geochronology KW - Ultrahigh-pressure Y1 - 2011 U6 - https://doi.org/10.1016/j.lithos.2011.04.004 SN - 0024-4937 VL - 125 IS - 1-2 SP - 743 EP - 756 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Franzmann, Simon T. T1 - Competition, contest, and cooperation the analytic framework of the issue market JF - Journal of theoretical politics N2 - Although party competition is widely regarded as an important part of a working democracy, it is rarely analysed in political science literature. This article discusses the basic properties of party competition, especially the patterns of interaction in contemporary party systems. Competition as a phenomenon at the macro level has to be carefully distinguished from contest and cooperation as the forms of interaction at the micro level. The article gives special attention to the creation of issue innovations. Contrary to existing approaches, I argue that not only responsiveness but also innovation are necessary to guarantee a workable democratic competition. Competition takes place on an issue market, where parties can discover voters' demands. Combined with the concept of institutional veto points, the article presents hypotheses on how institutions shape the possibility for programmatic innovations. KW - cooperation KW - innovation KW - issue market KW - party competition KW - veto point Y1 - 2011 U6 - https://doi.org/10.1177/0951629811411747 SN - 0951-6298 SN - 1460-3667 VL - 23 IS - 3 SP - 317 EP - 343 PB - Sage Publ. CY - London ER - TY - JOUR A1 - Kuhn, Daniela A1 - Ohrnberger, Matthias A1 - Dahm, Torsten T1 - Imaging a shallow salt diapir using ambient seismic vibrations beneath the densely built-up city area of Hamburg, Northern Germany JF - Journal of seismology N2 - Salt diapirs are common features of sedimentary basins. If close to the surface, they can bear a significant hazard due to possible dissolution sinkholes, karst formation and collapse dolines or their influence on ground water chemistry. We investigate the potential of ambient vibration techniques to map the 3-D roof morphology of shallow salt diapirs. Horizontal-to-vertical (H/V) spectral peaks are derived at more than 900 positions above a shallow diapir beneath the city area of Hamburg, Germany, and are used to infer the depth of the first strong impedance contrast. In addition, 15 small-scale array measurements are conducted at different positions in order to compute frequency-dependent phase velocities of Rayleigh waves between 0.5 and 25 Hz. The dispersion curves are inverted together with the H/V peak frequency to obtain shear-wave velocity profiles. Additionally, we compare the morphology derived from H/V and array measurements to borehole lithology and a gravity-based 3-D model of the salt diapir. Both methods give consistent results in agreement with major features indicated by the independent data. An important result is that H/V and array measurements are better suited to identify weathered gypsum caprocks or gypsum floaters, while gravity-derived models better sample the interface between sediments and homogeneous salt. We further investigate qualitatively the influence of the 3-D subsurface topography of the salt diapir on the validity of local 1-D inversion results from ambient vibration dispersion curve inversion. KW - Ambient seismic vibrations KW - H/V method KW - Array measurements KW - Salt diapir KW - 3-D effects Y1 - 2011 U6 - https://doi.org/10.1007/s10950-011-9234-y SN - 1383-4649 VL - 15 IS - 3 SP - 507 EP - 531 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Endrun, Brigitte T1 - Love wave contribution to the ambient vibration H/V amplitude peak observed with array measurements JF - Journal of seismology N2 - This study applies array methods to measure the relative proportions of Love and Rayleigh waves in the ambient vibration wavefield. Information on these properties is of special relevance for frequencies around the horizontal-to-vertical (H/V) spectral amplitude ratio peak. The analysis of H/V curves, a popular technique in site characterisation, commonly assumes that the curves represent the frequency-dependent Rayleigh wave ellipticity. For the detailed interpretation of amplitudes or the inversion of the curves, it is therefore necessary to estimate and correct for the contribution of other wave types to the ambient vibration wavefield. I use available ambient vibration array measurements to determine the relative amount of Love and Rayleigh waves on the horizontal components by frequency-dependent analysis of the main propagation and polarisation directions, with a special emphasis on the H/V peak frequency as determined from the same recordings. Tests with synthetic data demonstrate the feasibility of this approach, at least in the presence of dominant source regions. Analysis of the data from 12 measurements at nine European sites, which include shallow as well as deep locations that span a wide range of impedance contrasts at the sediment-bedrock interface, indicates that the relative contribution of Rayleigh waves varies widely with frequency, from close to 0% to more than 70%. While most data sets show relative Rayleigh wave contributions between 40% and 50% around the H/V peak, there are also examples where Love waves clearly dominate the wavefield at the H/V peak, even for a site with a low impedance contrast. Longer-term measurements at one site indicate temporal variations in the relative Rayleigh wave content between day- and nighttime. Results calculated with the method introduced herein generally compare well with results of modified spatial autocorrelation analysis. These two methods might be used in a complimentary fashion, as both rely on different properties of the ambient vibration wavefield. This study illustrates that it is possible to measure the relative Rayleigh wave content of the noise wavefield from array data. Furthermore, the examples presented herein indicate it is important to estimate this property, as the assumption that there are an equal proportion of Love and Rayleigh waves is not always correct. KW - Ambient vibrations KW - Surface waves KW - Array seismology KW - Polarisation analysis KW - H/V spectral ratio KW - Site characterisation Y1 - 2011 U6 - https://doi.org/10.1007/s10950-010-9191-x SN - 1383-4649 VL - 15 IS - 3 SP - 443 EP - 472 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Thawnashom, Kittisak A1 - Tungtrongchitr, Rungsunn A1 - Chanchay, Siriporn A1 - Tungtrongchitr, Anchalee A1 - Raila, Jens A1 - Henze, Andrea A1 - Schweigert, Florian J. T1 - Association between Retinol-Binding protein and renal function among Asian subjects with type 2 diabetes mellitus a cross-sectionaö study JF - The Southeast Asian journal of tropical medicine and public health : official publication of the SEAMEO Regional Tropical Medicine and Public Health Project (TROPMED) N2 - Retinol-binding protein 4 (RBP4) has been suggested as new adipokine, possibly linking obesity to type 2 diabetes mellitus (T2DM). Since the kidneys are the main site of RBP4 degradation and since renal failure is a frequent co-morbid condition with diabetes mellitus, we evaluated the association among RBP4, renal function and T2DM in an Asian population. RBP4 serum levels were analyzed in 110 subjects (50 with T2DM) using an enzyme-linked immunosorbent assay (ELISA). Based on a cut-off estimated glomerular filtration rate (eGFR) of 60 ml/min per 1.73 m(2) (calculated according the abbreviated MDRD formula which uses serum creatinine level, age and gender) and on the T2DM status, subjects were assigned to four subgroups: Group A - controls with an eGFR > 60 ml/min per 1.73 m(2), Group B - controls with an eGFR < 60 ml/min per 1.73 m(2), Group C- T2DM subjects with an eGFR>60 ml/min per 1.73 m(2), and Group D - T2DM subjects with an eGFR <60 ml/ mm per 1.73 m(2). In both the T2DM and control groups, RBP4 levels were higher in subjects with an eGFR < 60 ml/min per 1.73 m(2) than in subjects with an eGFR >60 ml/min per 1.73 m(2). However, the difference was only significant between the control groups (p <0.05). After adjusting for age, gender, BMI, eGFR and the presence of T2DM, eGFR, not T2DM, was associated with plasma RBP4 levels (p<0.05). These results suggest among Asians the eGFR, but not the presence of T2DM, is a major determinant of RBP4 serum levels. The eGFR should be taken into account when evaluating the role of RBP4 in the pathogenesis of insulin resistance and T2DM. KW - retinol-binding protein 4 KW - renal function KW - type 2 diabetes mellitus KW - Asian subjects Y1 - 2011 SN - 0125-1562 VL - 42 IS - 4 SP - 936 EP - 945 PB - SEAMEO CY - Bangkok ER - TY - JOUR A1 - Delahaye, T. A1 - Fiasson, A. A1 - Pohl, Martin A1 - Salati, P. T1 - The GeV-TeV Galactic gamma-ray diffuse emission I. Uncertainties in the predictions of the hadronic component JF - Astronomy and astrophysics : an international weekly journal N2 - Context. The Galactic gamma-ray diffuse emission is currently observed in the GeV-TeV energy range with unprecedented accuracy by the Fermi satellite. Understanding this component is crucial because it provides a background to many different signals, such as extragalactic sources or annihilating dark matter. It is timely to reinvestigate how it is calculated and to assess the various uncertainties that are likely to affect the accuracy of the predictions. Aims. The Galactic gamma-ray diffuse emission is mostly produced above a few GeV by the interactions of cosmic ray primaries impinging on the interstellar material. The theoretical error on that component is derived by exploring various potential sources of uncertainty. Particular attention is paid to cosmic ray propagation. Nuclear cross sections, the proton and helium fluxes at the Earth's position, the Galactic radial profile of supernova remnants, and the hydrogen distribution can also severely affect the signal. Methods. The propagation of cosmic ray species throughout the Galaxy is described in the framework of a semi-analytic two-zone diffusion/convection model. The gamma-ray flux is reliably and quickly determined. This allows conversion of the constraints set by the boron-to-carbon data into a theoretical uncertainty on the diffuse emission. New deconvolutions of the HI and CO sky maps are also used to get the hydrogen distribution within the Galaxy. Results. The thickness of the cosmic ray diffusive halo is found to have a significant effect on the Galactic gamma-ray diffuse emission, while the interplay between diffusion and convection has little influence on the signal. The uncertainties related to nuclear cross sections and to the primary cosmic ray fluxes at the Earth are significant. The radial distribution of supernova remnants along the Galactic plane turns out to be a key ingredient. As expected, the predictions are extremely sensitive to the spatial distribution of hydrogen within the Milky Way. Conclusions. Most of the sources of uncertainty are likely to be reduced in the near future. The stress should be put (i) on better determination of the thickness of the cosmic ray diffusive halo; and (ii) on refined observations of the radial profile of supernova remnants. KW - gamma rays: diffuse background KW - cosmic rays KW - methods: analytical KW - gamma rays: ISM Y1 - 2011 U6 - https://doi.org/10.1051/0004-6361/201116647 SN - 0004-6361 VL - 531 IS - 4 PB - EDP Sciences CY - Les Ulis ER - TY - JOUR A1 - Kappel, Marcel A1 - Abel, Markus A1 - Gerhard, Reimund T1 - Characterization and calibration of piezoelectric polymers in situ measurements of body vibrations JF - Review of scientific instruments : a monthly journal devoted to scientific instruments, apparatus, and techniques N2 - Piezoelectric polymers are known for their flexibility in applications, mainly due to their bending ability, robustness, and variable sensor geometry. It is an optimal material for minimal-invasive investigations in vibrational systems, e.g., for wood, where acoustical impedance matches particularly well. Many applications may be imagined, e. g., monitoring of buildings, vehicles, machinery, alarm systems, such that our investigations may have a large impact on technology. Longitudinal piezoelectricity converts mechanical vibrations normal to the polymer-film plane into an electrical signal, and the respective piezoelectric coefficient needs to be carefully determined in dependence on the relevant material parameters. In order to evaluate efficiency and durability for piezopolymers, we use polyvinylidene fluoride and measure the piezoelectric coefficient with respect to static pressure, amplitude of the dynamically applied force, and long-term stability. A known problem is the slow relaxation of the material towards equilibrium, if the external pressure changes; here, we demonstrate how to counter this problem with careful calibration. Since our focus is on acoustical measurements, we determine accurately the frequency response curve - for acoustics probably the most important characteristic. Eventually, we show that our piezopolymer transducers can be used as a calibrated acoustical sensors for body vibration measurements on a wooden musical instrument, where it is important to perform minimal-invasive measurements. A comparison with the simultaneously recorded airborne sound yields important insight of the mechanism of sound radiation in comparison with the sound propagating in the material. This is especially important for transient signals, where not only the long-living eigenmodes contribute to the sound radiation. Our analyses support that piezopolymer sensors can be employed as a general tool for the determination of the internal dynamics of vibrating systems. KW - acoustic transducers KW - calibration KW - durability KW - electric sensing devices KW - piezoelectricity KW - polymers Y1 - 2011 U6 - https://doi.org/10.1063/1.3607435 SN - 0034-6748 VL - 82 IS - 7 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Herzschuh, Ulrike A1 - Ni, Jian A1 - Birks, H. John B. A1 - Böhner, Jürgen T1 - Driving forces of mid-Holocene vegetation shifts on the upper Tibetan Plateau, with emphasis on changes in atmospheric CO2 concentrations JF - Quaternary science reviews : the international multidisciplinary research and review journal N2 - Numerous pollen records across the upper Tibetan Plateau indicate that in the early part of the mid-Holocene, Kobresia-rich high-alpine meadows invaded areas formerly dominated by alpine steppe vegetation rich in Artemisia. We examine climate, land-use, and CO2 concentration changes as potential drivers for this marked vegetation change. The climatic implications of these vegetational shifts are explored by applying a newly developed pollen-based moisture-balance transfer-function to fossil pollen spectra from Koucha Lake on the north-eastern Tibetan Plateau (34.0 degrees N; 97.2 degrees E; 4540 m a.s.l.) and Xuguo Lake on the central Tibetan Plateau (31.97 degrees N; 90.3 degrees E; 4595 m a.s.l.), both located in the meadow-steppe transition zone. Reconstructed moisture-balances were markedly reduced (by similar to 150-180 mm) during the early mid-Holocene compared to the late-Holocene. These findings contradict most other records from the Indian monsoonal realm and also most non-pollen records from the Tibetan Plateau that indicate a rather wet early- and mid-Holocene. The extent and timing of anthropogenic land-use involving grazing by large herbivores on the upper Tibetan Plateau and its possible impacts on high-alpine vegetation are still mostly unknown due to the lack of relevant archaeological evidence. Arguments against a mainly anthropogenic origin of Kobresia high-alpine meadows are the discovery of the widespread expansion of obviously 'natural' Kobresia meadows on the south-eastern Tibetan Plateau during the Lateglacial period indicating the natural origin of this vegetation type and the lack of any concurrence between modern human-driven vegetation shifts and the mid-Holocene compositional changes. Vegetation types are known to respond to atmospheric CO2 concentration changes, at least on glacial-interglacial scales. This assumption is confirmed by our sensitivity study where we model Tibetan vegetation at different CO2 concentrations of 375 (present-day), 260 (early Holocene), and 650 ppm (future scenario) using the BIOME4 global vegetation model. Previous experimental studies confirm that vegetation growing on dry and high sites is particularly sensitive to CO2 changes. Here we propose that the replacement of drought-resistant alpine steppes (that are well adapted to low CO2 concentrations) by mesic Kobresia meadows can, at least, be partly interpreted as a response to the increase of CO2 concentration since 7000 years ago due to fertilization and water-saving effects. Our hypothesis is corroborated by former CO2 fertilization experiments performed on various dry grasslands and by the strong recent expansion of high-alpine meadows documented by remote sensing studies in response to recent CO2 increases. KW - Tibetan Plateau KW - Pollen KW - Holocene KW - Transfer function KW - Kobresia meadow KW - Atmospheric CO2 concentration Y1 - 2011 U6 - https://doi.org/10.1016/j.quascirev.2011.03.007 SN - 0277-3791 VL - 30 IS - 15-16 SP - 1907 EP - 1917 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Raila, Jens A1 - Schweigert, Florian J. A1 - Kohn, Barbara T1 - C-reactive protein concentrations in serum of dogs with naturally occurring renal disease JF - Journal of veterinary diagnostic investigation N2 - The current study was undertaken to investigate the relation between serum C-reactive protein (CRP) concentrations and parameters of renal function in dogs with naturally occurring renal disease. Dogs were assigned to groups according to plasma creatinine concentration, urinary protein-to-creatinine ratio (UP/UC), and exogenous plasma creatinine clearance (P-Cl(Cr)) rates. Group A (healthy control dogs; n = 8): non-azotemic (plasma creatinine <125 mu mol/l) and nonproteinuric (UP/UC <0.2), with P-Cl(Cr) rates >90 ml/min/m(2); group B (n = 11): non-azotemic, nonproteinuric dogs with reduced P-Cl(Cr) rates (50-89 ml/min/m(2)); group C (n = 7): azotemic, borderline proteinuric dogs (P-Cl(Cr) rates: 22-67 ml/min/m(2)); and group D (n = 6): uremic, proteinuric dogs (not tested for P-Cl(Cr)). The serum CRP concentrations were measured via commercial enzyme-linked immunosorbent assay. The CRP concentrations in the clinically healthy dogs (group A) ranged from 2.09 mg/l to 8.60 mg/l (median: 3.21 mg/l). In comparison with dogs of group A, median CRP concentrations were significantly (P < 0.01) elevated in dogs of group B (17.6 mg/l, range: 17.0-19.2 mg/l), group C (24.8 mg/l, range: 18.0-32.5 mg/l), and group D (59.7 mg/l, range: 17.7-123 mg/l). Serum CRP was significantly related to P-Cl(Cr) (r = -0.83; P < 0.001), plasma creatinine (r = 0.81; P < 0.001), UP/UC (r = 0.70; P < 0.001), and leukocytes (r = 0.49; P < 0.01). The significant relations between serum CRP concentrations and biochemical parameters of kidney function in plasma and urine suggest that a stimulation of the acute phase response is implicated in the pathogenesis of canine renal disease. KW - C-reactive protein KW - dogs KW - proteinuria KW - renal disease Y1 - 2011 U6 - https://doi.org/10.1177/1040638711407896 SN - 1040-6387 VL - 23 IS - 4 SP - 710 EP - 715 PB - Sage Publ. CY - Thousand Oaks ER - TY - JOUR A1 - Sperfeld, Erik A1 - Wacker, Alexander T1 - Temperature- and cholesterol-induced changes in eicosapentaenoic acid limitation of Daphnia magna determined by a promising method to estimate growth saturation thresholds JF - Limnology and oceanography N2 - We present data on eicosapentaenoic acid (EPA)-limited growth responses of Daphnia magna under different temperatures and different dietary cholesterol availabilities to assess how EPA growth saturation thresholds depend on changing environmental conditions. D. magna was raised on gradients of dietary EPA at 15 degrees C and 20 degrees C with high cholesterol supply and at 20 degrees C with low and high cholesterol supply in laboratory experiments. A new method was applied to estimate EPA growth saturation thresholds on the basis of fitted saturation curves using bootstrapped data. The EPA threshold at which 75% and 90% of maximum growth was reached ranged from 0.7 to 1.6 mu g EPA (mg dietary C)(-1) and 2.0 to 4.9 mu g EPA (mg dietary C)(-1), respectively. Previously reported EPA concentrations in natural seston of many different lakes suggest that the thresholds measured here indicate a frequent potential for at least moderate EPA limitation in nature. Furthermore, the calculated EPA thresholds were higher in treatments of low compared with high temperature and higher in treatments of low compared with high cholesterol availability. The EPA-dependent growth responses were more strongly affected by temperature than by cholesterol availability. Our results suggest that EPA growth saturation thresholds for a particular Daphnia species probably vary in nature under different environmental conditions. Y1 - 2011 U6 - https://doi.org/10.4319/lo.2011.56.4.1273 SN - 0024-3590 VL - 56 IS - 4 SP - 1273 EP - 1284 PB - Wiley CY - Waco ER - TY - JOUR A1 - Polyvyanyy, Artem A1 - Weidlich, Matthias A1 - Weske, Mathias T1 - Connectivity of workflow nets the foundations of stepwise verification JF - Acta informatica N2 - Behavioral models capture operational principles of real-world or designed systems. Formally, each behavioral model defines the state space of a system, i.e., its states and the principles of state transitions. Such a model is the basis for analysis of the system's properties. In practice, state spaces of systems are immense, which results in huge computational complexity for their analysis. Behavioral models are typically described as executable graphs, whose execution semantics encodes a state space. The structure theory of behavioral models studies the relations between the structure of a model and the properties of its state space. In this article, we use the connectivity property of graphs to achieve an efficient and extensive discovery of the compositional structure of behavioral models; behavioral models get stepwise decomposed into components with clear structural characteristics and inter-component relations. At each decomposition step, the discovered compositional structure of a model is used for reasoning on properties of the whole state space of the system. The approach is exemplified by means of a concrete behavioral model and verification criterion. That is, we analyze workflow nets, a well-established tool for modeling behavior of distributed systems, with respect to the soundness property, a basic correctness property of workflow nets. Stepwise verification allows the detection of violations of the soundness property by inspecting small portions of a model, thereby considerably reducing the amount of work to be done to perform soundness checks. Besides formal results, we also report on findings from applying our approach to an industry model collection. Y1 - 2011 U6 - https://doi.org/10.1007/s00236-011-0137-8 SN - 0001-5903 VL - 48 IS - 4 SP - 213 EP - 242 PB - Springer CY - New York ER - TY - JOUR A1 - Mileo, Alessandra A1 - Schaub, Torsten A1 - Merico, Davide A1 - Bisiani, Roberto T1 - Knowledge-based multi-criteria optimization to support indoor positioning JF - Annals of mathematics and artificial intelligence N2 - Indoor position estimation constitutes a central task in home-based assisted living environments. Such environments often rely on a heterogeneous collection of low-cost sensors whose diversity and lack of precision has to be compensated by advanced techniques for localization and tracking. Although there are well established quantitative methods in robotics and neighboring fields for addressing these problems, they lack advanced knowledge representation and reasoning capacities. Such capabilities are not only useful in dealing with heterogeneous and incomplete information but moreover they allow for a better inclusion of semantic information and more general homecare and patient-related knowledge. We address this problem and investigate how state-of-the-art localization and tracking methods can be combined with Answer Set Programming, as a popular knowledge representation and reasoning formalism. We report upon a case-study and provide a first experimental evaluation of knowledge-based position estimation both in a simulated as well as in a real setting. KW - Knowledge representation KW - Answer Set Programming KW - Wireless Sensor Networks KW - Localization KW - Tracking Y1 - 2011 U6 - https://doi.org/10.1007/s10472-011-9241-2 SN - 1012-2443 SN - 1573-7470 VL - 62 IS - 3-4 SP - 345 EP - 370 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Bierbach, David A1 - Schulte, Matthias A1 - Herrmann, Nina A1 - Tobler, Michael A1 - Stadler, Stefan A1 - Jung, Christian T. A1 - Kunkel, Benjamin A1 - Riesch, Rüdiger A1 - Klaus, Sebastian A1 - Ziege, Madlen A1 - Rimber Indy, Jeane A1 - Arias-Rodriguez, Lenin A1 - Plath, Martin T1 - Predator-induced changes of female mating preferences innate and experiential effects JF - BMC evolutionary biology N2 - Background: In many species males face a higher predation risk than females because males display elaborate traits that evolved under sexual selection, which may attract not only females but also predators. Females are, therefore, predicted to avoid such conspicuous males under predation risk. The present study was designed to investigate predator-induced changes of female mating preferences in Atlantic mollies (Poecilia mexicana). Males of this species show a pronounced polymorphism in body size and coloration, and females prefer large, colorful males in the absence of predators. Results: In dichotomous choice tests predator-naive (lab-reared) females altered their initial preference for larger males in the presence of the cichlid Cichlasoma salvini, a natural predator of P. mexicana, and preferred small males instead. This effect was considerably weaker when females were confronted visually with the non-piscivorous cichlid Vieja bifasciata or the introduced non-piscivorous Nile tilapia (Oreochromis niloticus). In contrast, predator experienced (wild-caught) females did not respond to the same extent to the presence of a predator, most likely due to a learned ability to evaluate their predators' motivation to prey. Conclusions: Our study highlights that (a) predatory fish can have a profound influence on the expression of mating preferences of their prey (thus potentially affecting the strength of sexual selection), and females may alter their mate choice behavior strategically to reduce their own exposure to predators. (b) Prey species can evolve visual predator recognition mechanisms and alter their mate choice only when a natural predator is present. (c) Finally, experiential effects can play an important role, and prey species may learn to evaluate the motivational state of their predators. KW - Sexual selection KW - female choice KW - non-independent mate choice KW - predator recognition KW - Poecilia mexicana Y1 - 2011 U6 - https://doi.org/10.1186/1471-2148-11-190 SN - 1471-2148 VL - 11 IS - 3-4 PB - BioMed Central CY - London ER - TY - JOUR A1 - Jersabek, Christian D. A1 - Weithoff, Guntram A1 - Weisse, Thomas T1 - Cephalodella acidophila n. sp (Monogononta: Notommatidae), a new rotifer species from highly acidic mining lakes JF - Zootaxa : an international journal of zootaxonomy ; a rapid international journal for animal taxonomists N2 - We describe a new species of Cephalodella, C. acidophila n. sp., from the plankton of two extremely acidic mining lakes (pH <3) in Austria and Germany. The species is morphologically closely related to Cephalodella delicata Wulfert. It shares with the latter an almost identical trophi morphology and anatomical organization, but differs clearly by form and length of its toes, larger body size, and ecology. Laboratory experiments revealed that the species is acidophilic, i.e. it thrives at low pH (<4) and does not survive at circumneutral conditions. The species occurs in man-made habitats at low to moderate abundance (usually 5-22 individuals l(-1)) and in stock cultures thrives on the green alga Chlamydomonas acidophila. The easily cultured species has previously been used in various experimental studies, but has only now been recognized as an undescribed species. KW - Rotifera KW - taxonomy KW - acidophily KW - new species Y1 - 2011 SN - 1175-5326 IS - 2939 SP - 50 EP - 58 PB - Magnolia Press CY - Auckland ER - TY - JOUR A1 - Kepplinger, Christian A1 - Lisdat, Fred A1 - Wollenberger, Ursula T1 - Cytochrome c/polyelectrolyte multilayers investigated by E-QCM-D - effect of temperature on the assembly structure JF - Langmuir N2 - Protein multilayers, consisting of cytochrome c (cyt c) and poly(aniline sulfonic acid) (PASA), are investigated by electrochemical quartz crystal microbalance with dissipation monitoring (E-QCM-D). This technique reveals that a four-bilayer assembly has rather rigid properties. A thickness of 16.3 +/- 0.8 nm is calculated with the Sauerbrey equation and is found to be in good agreement with a viscoelastic model. The electroactive amount of cyt c is estimated by the deposited mass under the assumption of 50% coupled water. Temperature-induced stabilization of the multilayer assembly has been investigated in the temperature range between 30 and 45 degrees C. The treatment results in a loss of material and a contraction of the film. The electroactive amount of cyt c also decreases during heating and remains constant after the cooling period. The contraction of the film is accompanied by the enhanced stability of the assembly. In addition, it is found that cyt c and PASA can be assembled at higher temperatures, resulting in the formation of multilayer systems with less dissipation. Y1 - 2011 U6 - https://doi.org/10.1021/la200860p SN - 0743-7463 VL - 27 IS - 13 SP - 8309 EP - 8315 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Wessig, Pablo A1 - Pick, Charlotte T1 - Photochemical synthesis and properties of axially chiral naphthylpyridines JF - Journal of photochemistry and photobiology : A, Chemistry N2 - Five alkynyl pyridines were prepared and cyclized to naphthylpyridines as the main products in the course of a Photo-Dehydro-Diels-Alder reaction. Four of the final products are axially chiral and the determination of the rotational barrier by DFT calculations, dynamic NMR and H PLC experiments is demonstrated. (C) 2011 Elsevier B.V. All rights reserved. KW - Photochemistry KW - Axial chirality KW - Photo-Dehydro-Diels-Alder reaction KW - Dynamic NMR KW - Dynamic HPLC KW - Molecular modeling Y1 - 2011 U6 - https://doi.org/10.1016/j.jphotochem.2011.06.006 SN - 1010-6030 VL - 222 IS - 1 SP - 263 EP - 265 PB - Elsevier CY - Lausanne ER - TY - JOUR A1 - Lueck, S. A1 - Pikovskij, Arkadij T1 - Dynamics of multi-frequency oscillator ensembles with resonant coupling JF - Modern physics letters : A, Particles and fields, gravitation, cosmology, nuclear physics N2 - We study dynamics of populations of resonantly coupled oscillators having different frequencies. Starting from the coupled van der Pol equations we derive the Kuramoto-type phase model for the situation, where the natural frequencies of two interacting subpopulations are in relation 2 : 1. Depending on the parameter of coupling, ensembles can demonstrate fully synchronous clusters, partial synchrony (only one subpopulation synchronizes), or asynchrony in both subpopulations. Theoretical description of the dynamics based on the Watanabe-Strogatz approach is developed. KW - Oscillator populations KW - Kuramoto model KW - Resonant interaction Y1 - 2011 U6 - https://doi.org/10.1016/j.physleta.2011.06.016 SN - 0375-9601 VL - 375 IS - 28-29 SP - 2714 EP - 2719 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Levnajic, Zoran A1 - Pikovskij, Arkadij T1 - Network reconstruction from random phase resetting JF - Physical review letters N2 - We propose a novel method of reconstructing the topology and interaction functions for a general oscillator network. An ensemble of initial phases and the corresponding instantaneous frequencies is constructed by repeating random phase resets of the system dynamics. The desired details of network structure are then revealed by appropriately averaging over the ensemble. The method is applicable for a wide class of networks with arbitrary emergent dynamics, including full synchrony. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevLett.107.034101 SN - 0031-9007 VL - 107 IS - 3 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Rivnay, Jonathan A1 - Steyrleuthner, Robert A1 - Jimison, Leslie H. A1 - Casadei, Alberto A1 - Chen, Zhihua A1 - Toney, Michael F. A1 - Facchetti, Antonio A1 - Neher, Dieter A1 - Salleo, Alberto T1 - Drastic control of texture in a high performance n-Type polymeric semiconductor and implications for charge transport JF - Macromolecules : a publication of the American Chemical Society N2 - Control of crystallographic texture from mostly face-on to edge-on is observed for the film morphology of the n-type semicrystalline polymer [N,N-9-bis(2-octyldodecyl)naphthalene-1,4,5,8-bis(dicarboximide)-2,6-diy1]alt-5,59-(2,29-bithiophene)}, P(NDI2OD-T2), when annealing the film to the polymer melting point followed by slow cooling to ambient temperature. A variety of X-ray diffraction analyses, including pole figure construction and Fourier transform peak shape deconvolution, are employed to quantify the texture change, relative degree of crystallinity and lattice order. We find that annealing the polymer film to the melt leads to a shift from 77.5% face-on to 94.6% edge-on lamellar texture as well as to a 2-fold increase in crystallinity and a 40% decrease in intracrystallite cumulative disorder. The texture change results in a significant drop in the electron-only diode current density through the film thickness upon melt annealing while little change is observed in the in-plane transport of bottom gated thin film transistors. This suggests that the texture change is prevalent in the film interior and that either the (bottom) surface structure is different from the interior structure or the intracrystalline order and texture play a secondary role in transistor transport for this material. Y1 - 2011 U6 - https://doi.org/10.1021/ma200864s SN - 0024-9297 VL - 44 IS - 13 SP - 5246 EP - 5255 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Kaiser, Bjoern Onno A1 - Cacace, Mauro A1 - Scheck-Wenderoth, Magdalena A1 - Lewerenz, Bjoern T1 - Characterization of main heat transport processes in the Northeast German Basin constraints from 3-D numerical models JF - Geochemistry, geophysics, geosystems N2 - To investigate and quantify main physical heat driving processes affecting the present-day subsurface thermal field, we study a complex geological setting, the Northeast German Basin (NEGB). The internal geological structure of the NEGB is characterized by the presence of a relatively thick layer of Permian Zechstein salt (up to 5000 m), which forms many salt diapirs and pillows locally reaching nearly the surface. By means of three-dimensional numerical simulations we explore the role of heat conduction, pressure, and density driven groundwater flow as well as fluid viscosity related effects. Our results suggest that the regional temperature distribution within the basin results from interactions between regional pressure forces as driven by topographic gradients and thermal diffusion locally enhanced by thermal conductivity contrasts between the different sedimentary rocks with the highly conductive salt playing a prominent role. In contrast, buoyancy forces triggered by temperature-dependent fluid density variations are demonstrated to affect only locally the internal thermal configuration. Locations, geometry, and wavelengths of convective thermal anomalies are mainly controlled by the permeability field and thickness values of the respective geological layers. KW - advection KW - convection KW - coupled fluid and heat transport KW - numerical simulations KW - Northeast German Basin KW - salt structures Y1 - 2011 U6 - https://doi.org/10.1029/2011GC003535 SN - 1525-2027 VL - 12 IS - 13 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Gerhardt, Matthias A1 - Groeger, Gillian A1 - MacCarthy, Niall T1 - Monopolar vs. bipolar subretinal stimulation-An in vitro study JF - Journal of neuroscience methods N2 - This study uses an in vitro rd10 mouse model to quantify and compare the ability of the monopolar and the (concentric) bipolar electrode configurations for subretinal stimulation. To allow for results which can be directly compared an identical region of the retina was stimulated due to the circumstance that the bipolar electrode configuration allows also for monopolar stimulation, if the concentric counter-electrode is set potential-free (floating). A ganglion cell, located centrally over the bipolar electrode configuration was selected to extracellularly record action potentials during stimulation. To analyse the recorded action potentials, we introduce a new method which combines the advantages of (a) singular value decomposition (SVD) for weighting similar modulation patterns with which the recorded action potentials are characterized and (b) multi curve fitting to identify a common threshold level, required to finally assemble a strength-duration relationship (SDR). By directly comparing the obtained SDR curves, we found that the efficiency of stimulation with the monopolar electrode configuration is significantly higher than with the bipolar electrode configuration. All obtained SDR curves were fitted using the Lapicque model to estimate the chronaxie times and the rheobase currents. Liquid inclusions, eventually separating the retina from the electrodes are discussed to be a major cause for low ganglion cell responses during stimulation with the bipolar electrode configuration. KW - SVD KW - Subretinal KW - Electrodes KW - Monopolar KW - Bipolar KW - Retina KW - Ganglion KW - Cells Y1 - 2011 U6 - https://doi.org/10.1016/j.jneumeth.2011.04.017 SN - 0165-0270 VL - 199 IS - 1 SP - 26 EP - 34 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Qiu, Xunlin A1 - Wirges, Werner A1 - Gerhard, Reimund T1 - Beneficial and detrimental fatigue effects of dielectric barrier discharges on the piezoelectricity of polypropylene ferroelectrets JF - Journal of applied physics N2 - Cellular polypropylene (PP) ferroelectrets combine a large piezoelectricity with mechanical flexibility and elastic compliance. Their charging process represents a series of dielectric barrier discharges (DBDs) that generate a cold plasma with numerous active species and thus modify the inner polymer surfaces of the foam cells. Both the threshold for the onset of DBDs and the piezoelectricity of ferroelectrets are sensitive to repeated DBDs in the voids. It is found that the threshold voltage is approximately halved and the charging efficiency is clearly improved after only 10(3) DBD cycles. However, plasma modification of the inner surfaces from repeated DBDs deteriorates the chargeability of the voids, leading to a significant reduction of the piezoelectricity in ferroelectrets. After a significant waiting period, the chargeability of previously fatigued voids shows a partial recovery. The plasma modification is, however, detrimental to the stability of the deposited charges and thus also of the macroscopic dipoles and of the piezoelectricity. Fatigue from only 10(3) DBD cycles already results in significantly less stable piezoelectricity in cellular PP ferroelectrets. The fatigue rate as a function of the number of voltage cycles follows a stretched exponential. Fatigue from repeated DBDs can be avoided if most of the gas molecules inside the voids are removed via a suitable evacuation process. Y1 - 2011 U6 - https://doi.org/10.1063/1.3610507 SN - 0021-8979 SN - 1089-7550 VL - 110 IS - 2 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Geschka, Sandra A1 - Kretschmer, Axel A1 - Sharkovska, Yuliya A1 - Evgenov, Oleg V. A1 - Lawrenz, Bettina A1 - Hucke, Andreas A1 - Hocher, Berthold A1 - Stasch, Johannes-Peter T1 - Soluble guanylate cyclase stimulation prevents fibrotic tissue remodeling and improves survival in salt-sensitive dahl rats JF - PLoS one N2 - Background: A direct pharmacological stimulation of soluble guanylate cyclase (sGC) is an emerging therapeutic approach to the management of various cardiovascular disorders associated with endothelial dysfunction. Novel sGC stimulators, including riociguat (BAY 63-2521), have a dual mode of action: They sensitize sGC to endogenously produced nitric oxide (NO) and also directly stimulate sGC independently of NO. Little is known about their effects on tissue remodeling and degeneration and survival in experimental malignant hypertension. Methods and Results: Mortality, hemodynamics and biomarkers of tissue remodeling and degeneration were assessed in Dahl salt-sensitive rats maintained on a high salt diet and treated with riociguat (3 or 10 mg/kg/d) for 14 weeks. Riociguat markedly attenuated systemic hypertension, improved systolic heart function and increased survival from 33% to 85%. Histological examination of the heart and kidneys revealed that riociguat significantly ameliorated fibrotic tissue remodeling and degeneration. Correspondingly, mRNA expression of the pro-fibrotic biomarkers osteopontin (OPN), tissue inhibitor of matrix metalloproteinase-1 (TIMP-1) and plasminogen activator inhibitor-1 (PAI-1) in the myocardium and the renal cortex was attenuated by riociguat. In addition, riociguat reduced plasma and urinary levels of OPN, TIMP-1, and PAI-1. Conclusions: Stimulation of sGC by riociguat markedly improves survival and attenuates systemic hypertension and systolic dysfunction, as well as fibrotic tissue remodeling in the myocardium and the renal cortex in a rodent model of pressure and volume overload. These findings suggest a therapeutic potential of sGC stimulators in diseases associated with impaired cardiovascular and renal functions. Y1 - 2011 U6 - https://doi.org/10.1371/journal.pone.0021853 SN - 1932-6203 VL - 6 IS - 7 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Komarov, Maxim A1 - Pikovskij, Arkadij T1 - Effects of nonresonant interaction in ensembles of phase oscillators JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We consider general properties of groups of interacting oscillators, for which the natural frequencies are not in resonance. Such groups interact via nonoscillating collective variables like the amplitudes of the order parameters defined for each group. We treat the phase dynamics of the groups using the Ott-Antonsen ansatz and reduce it to a system of coupled equations for the order parameters. We describe different regimes of cosynchrony in the groups. For a large number of groups, heteroclinic cycles, corresponding to a sequential synchronous activity of groups and chaotic states where the order parameters oscillate irregularly, are possible. Y1 - 2011 U6 - https://doi.org/10.1103/PhysRevE.84.016210 SN - 1539-3755 VL - 84 IS - 1 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Hempel, Sabrina A1 - Koseska, Aneta A1 - Nikoloski, Zoran A1 - Kurths, Jürgen T1 - Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study JF - BMC bioinformatics N2 - Background: Inferring regulatory interactions between genes from transcriptomics time-resolved data, yielding reverse engineered gene regulatory networks, is of paramount importance to systems biology and bioinformatics studies. Accurate methods to address this problem can ultimately provide a deeper insight into the complexity, behavior, and functions of the underlying biological systems. However, the large number of interacting genes coupled with short and often noisy time-resolved read-outs of the system renders the reverse engineering a challenging task. Therefore, the development and assessment of methods which are computationally efficient, robust against noise, applicable to short time series data, and preferably capable of reconstructing the directionality of the regulatory interactions remains a pressing research problem with valuable applications. Results: Here we perform the largest systematic analysis of a set of similarity measures and scoring schemes within the scope of the relevance network approach which are commonly used for gene regulatory network reconstruction from time series data. In addition, we define and analyze several novel measures and schemes which are particularly suitable for short transcriptomics time series. We also compare the considered 21 measures and 6 scoring schemes according to their ability to correctly reconstruct such networks from short time series data by calculating summary statistics based on the corresponding specificity and sensitivity. Our results demonstrate that rank and symbol based measures have the highest performance in inferring regulatory interactions. In addition, the proposed scoring scheme by asymmetric weighting has shown to be valuable in reducing the number of false positive interactions. On the other hand, Granger causality as well as information-theoretic measures, frequently used in inference of regulatory networks, show low performance on the short time series analyzed in this study. Conclusions: Our study is intended to serve as a guide for choosing a particular combination of similarity measures and scoring schemes suitable for reconstruction of gene regulatory networks from short time series data. We show that further improvement of algorithms for reverse engineering can be obtained if one considers measures that are rooted in the study of symbolic dynamics or ranks, in contrast to the application of common similarity measures which do not consider the temporal character of the employed data. Moreover, we establish that the asymmetric weighting scoring scheme together with symbol based measures (for low noise level) and rank based measures (for high noise level) are the most suitable choices. Y1 - 2011 U6 - https://doi.org/10.1186/1471-2105-12-292 SN - 1471-2105 VL - 12 IS - 1 PB - BioMed Central CY - London ER - TY - JOUR A1 - Weiss, Andrea Y. A1 - Huisinga, Wilhelm T1 - Error-controlled global sensitivity analysis of ordinary differential equations JF - Journal of computational physics N2 - We propose a novel strategy for global sensitivity analysis of ordinary differential equations. It is based on an error-controlled solution of the partial differential equation (PDE) that describes the evolution of the probability density function associated with the input uncertainty/variability. The density yields a more accurate estimate of the output uncertainty/variability, where not only some observables (such as mean and variance) but also structural properties (e.g., skewness, heavy tails, bi-modality) can be resolved up to a selected accuracy. For the adaptive solution of the PDE Cauchy problem we use the Rothe method with multiplicative error correction, which was originally developed for the solution of parabolic PDEs. We show that, unlike in parabolic problems, conservation properties necessitate a coupling of temporal and spatial accuracy to avoid accumulation of spatial approximation errors over time. We provide convergence conditions for the numerical scheme and suggest an implementation using approximate approximations for spatial discretization to efficiently resolve the coupling of temporal and spatial accuracy. The performance of the method is studied by means of low-dimensional case studies. The favorable properties of the spatial discretization technique suggest that this may be the starting point for an error-controlled sensitivity analysis in higher dimensions. KW - ODE with random initial conditions KW - Global sensitivity analysis KW - Cauchy problem KW - Error control/adaptivity KW - Rothe method KW - Approximate approximations Y1 - 2011 U6 - https://doi.org/10.1016/j.jcp.2011.05.011 SN - 0021-9991 VL - 230 IS - 17 SP - 6824 EP - 6842 PB - Elsevier CY - San Diego ER -