TY - JOUR A1 - Tiedemann, Ralph A1 - Paulus, Kirsten B. A1 - Havenstein, Katja A1 - Thorstensen, Sverrir A1 - Petersen, Aevar A1 - Lyngs, Peter A1 - Milinkovitch, Michel C. T1 - Alien eggs in duck nests brood parasitism or a help from Grandma? JF - Molecular ecology N2 - Intraspecific brood parasitism (IBP) is a remarkable phenomenon by which parasitic females can increase their reproductive output by laying eggs in conspecific females' nests in addition to incubating eggs in their own nest. Kin selection could explain the tolerance, or even the selective advantage, of IBP, but different models of IBP based on game theory yield contradicting predictions. Our analyses of seven polymorphic autosomal microsatellites in two eider duck colonies indicate that relatedness between host and parasitizing females is significantly higher than the background relatedness within the colony. This result is unlikely to be a by-product of relatives nesting in close vicinity, as nest distance and genetic identity are not correlated. For eider females that had been ring-marked during the decades prior to our study, our analyses indicate that (i) the average age of parasitized females is higher than the age of nonparasitized females, (ii) the percentage of nests with alien eggs increases with the age of nesting females, (iii) the level of IBP increases with the host females' age, and (iv) the number of own eggs in the nest of parasitized females significantly decreases with age. IBP may allow those older females unable to produce as many eggs as they can incubate to gain indirect fitness without impairing their direct fitness: genetically related females specialize in their energy allocation, with young females producing more eggs than they can incubate and entrusting these to their older relatives. Intraspecific brood parasitism in ducks may constitute cooperation among generations of closely related females. KW - eider duck KW - indirect fitness KW - intraspecific brood parasitism KW - microsatellites KW - relatedness KW - Somateria mollissima Y1 - 2011 U6 - https://doi.org/10.1111/j.1365-294X.2011.05158.x SN - 0962-1083 VL - 20 IS - 15 SP - 3237 EP - 3250 PB - Wiley-Blackwell CY - Hoboken ER - TY - THES A1 - Sammler, Svenja A1 - Ketmaier, Valerio A1 - Havenstein, Katja A1 - Krause, Ulrike A1 - Curio, Eberhard A1 - Tiedemann, Ralph T1 - Mitochondrial control region I and microsatellite analyses of endangered Philippine hornbill species (Aves; Bucerotidae) detect gene flow between island populations and genetic diversity loss Y1 - 2012 UR - http://www.biomedcentral.com/content/pdf/1471-2148-12-203.pdf U6 - https://doi.org/10.1186/1471-2148-12-203 ER - TY - JOUR A1 - Sammler, Svenja A1 - Havenstein, Katja A1 - Tiedemann, Ralph T1 - Fourteen new microsatellite markers for the Visayan tarictic hornbill (Penelopides panini) and their cross-species applicability among other endangered Philippine hornbills JF - Conservation genetics resources N2 - Fourteen microsatellite markers were isolated and characterized for the endangered Visayan tarictic hornbill (Penelopides panini, Aves: Bucerotidae). In an analysis of 76 individuals, the number of alleles per locus varied from one to 12. Expected and observed heterozygosity ranged from 0.00 to 0.87 and from 0.00 to 0.89, respectively. All primers also amplify microsatellite loci in Luzon tarictic hornbill (Penelopides manillae), Mindanao tarictic hornbill (Penelopides affinis), the critically endangered Walden's hornbill (Aceros waldeni) and the near-threatened writhed hornbill (Aceros leucocephalus). Two loci which are monomorphic in P. panini were found polymorphic in at least one of the other species. These 14 new microsatellite markers specifically developed for two genera of Philippine hornbills, in combination with those already available for the hornbill genera Buceros and Bucorvus, comprise a reasonable number of loci to genetically analyse wild and captive populations of these and probably other related, often endangered hornbills. KW - Aceros KW - Bucerotidae KW - Cross-species amplification KW - Microsatellites KW - Penelopides Philippine hornbills Y1 - 2012 U6 - https://doi.org/10.1007/s12686-011-9567-4 SN - 1877-7252 VL - 4 IS - 2 SP - 435 EP - 438 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Sammler, Svenja A1 - Ketmaier, Valerio A1 - Havenstein, Katja A1 - Krause, Ulrike A1 - Curio, Eberhard A1 - Tiedemann, Ralph T1 - Mitochondrial control region I and microsatellite analyses of endangered Philippine hornbill species (Aves; Bucerotidae) detect gene flow between island populations and genetic diversity loss JF - BMC evolutionary biology N2 - Background: The Visayan Tarictic Hornbill (Penelopides panini) and the Walden's Hornbill (Aceros waldeni) are two threatened hornbill species endemic to the western islands of the Visayas that constitute - between Luzon and Mindanao - the central island group of the Philippine archipelago. In order to evaluate their genetic diversity and to support efforts towards their conservation, we analyzed genetic variation in similar to 600 base pairs (bp) of the mitochondrial control region I and at 12-19 nuclear microsatellite loci. The sampling covered extant populations, still occurring only on two islands (P. panini: Panay and Negros, A. waldeni: only Panay), and it was augmented with museum specimens of extinct populations from neighboring islands. For comparison, their less endangered (= more abundant) sister taxa, the Luzon Tarictic Hornbill (P. manillae) from the Luzon and Polillo Islands and the Writhed Hornbill (A. leucocephalus) from Mindanao Island, were also included in the study. We reconstructed the population history of the two Penelopides species and assessed the genetic population structure of the remaining wild populations in all four species. Results: Mitochondrial and nuclear data concordantly show a clear genetic separation according to the island of origin in both Penelopides species, but also unravel sporadic over-water movements between islands. We found evidence that deforestation in the last century influenced these migratory events. Both classes of markers and the comparison to museum specimens reveal a genetic diversity loss in both Visayan hornbill species, P. panini and A. waldeni, as compared to their more abundant relatives. This might have been caused by local extinction of genetically differentiated populations together with the dramatic decline in the abundance of the extant populations. Conclusions: We demonstrated a loss in genetic diversity of P. panini and A. waldeni as compared to their sister taxa P. manillae and A. leucocephalus. Because of the low potential for gene flow and population exchange across islands, saving of the remaining birds of almost extinct local populations - be it in the wild or in captivity - is particularly important to preserve the species' genetic potential. KW - Biogeography KW - Bucerotidae KW - Conservation genetics KW - Genetic diversity loss KW - Microsatellites KW - Mitochondrial control region I KW - Philippine archipelago KW - Phylogeography Y1 - 2012 U6 - https://doi.org/10.1186/1471-2148-12-203 SN - 1471-2148 VL - 12 IS - 25 PB - BioMed Central CY - London ER - TY - GEN A1 - Sammler, Svenja A1 - Ketmaier, Valerio A1 - Havenstein, Katja A1 - Tiedemann, Ralph T1 - Intraspecific rearrangement of duplicated mitochondrial control regions in the luzon tarictic hornbill penelopides manillae (Aves: Bucerotidae) T2 - Journal of molecular evolution N2 - Philippine hornbills of the genera Aceros and Penelopides (Bucerotidae) are known to possess a large tandemly duplicated fragment in their mitochondrial genome, whose paralogous parts largely evolve in concert. In the present study, we surveyed the two distinguishable duplicated control regions in several individuals of the Luzon Tarictic Hornbill Penelopides manillae, compare their characteristics within and across individuals, and report on an intraspecific mitochondrial gene rearrangement found in one single specimen, i.e., an interchange between the two control regions. To our knowledge, this is the first observation of two distinct mitochondrial genome rearrangements within a bird species. We briefly discuss a possible evolutionary mechanism responsible for this pattern, and highlight potential implications for the application of control region sequences as a marker in population genetics and phylogeography. KW - Bucerotidae KW - Concerted evolution KW - Control region KW - Mitochondrial gene order KW - Mitochondrial recombination KW - Philippine archipelago Y1 - 2013 U6 - https://doi.org/10.1007/s00239-013-9591-y SN - 0022-2844 SN - 1432-1432 VL - 77 IS - 5-6 SP - 199 EP - 205 PB - Springer CY - New York ER - TY - JOUR A1 - Tiedemann, Ralph A1 - Schneider, Anja R. R. A1 - Havenstein, Katja A1 - Blanck, Torsten A1 - Meier, Elmar A1 - Raffel, Martina A1 - Zwartepoorte, Henk A1 - Plath, Martin T1 - New microsatellite markers allow high-resolution taxon delimitation in critically endangered Asian box turtles, genus Cuora JF - Salamandra : German journal of herpetology N2 - We isolated and characterized 16 new di- and tetranudeotide microsatellite markers for the critically endangered Asian box turtle genus Cuora, focusing on the "Cuora trifasciata" species complex. The new markers were then used to analyse genetic variability and divergence amongst five described species within this complex, namely C. aurocapitata (n = 18), C. cyclornata (n = 31), C. pani (n = 6), C. trifasciata (n = 58), and C. zhoui (n = 7). Our results support the view that all five species represent valid taxa. Within two species (C. trifasciata and C. cyclornata), two distinct morphotypes were corroborated by microsatellite divergence. For three individuals, morphologically identified as being of hybrid origin, the hybrid status was confirmed by our genetic analysis. Our results confirm the controversial species (Cuora aurocapitata, C. cyclornata) and subspecies/morphotypes (C. cyclornata meieri, C. trifasciata cf. trifasciata) to be genetically distinct, which has critical implications for conservation strategies. KW - Testudines KW - Cuora KW - box turtles KW - captive breeding KW - conservation units KW - microsatellites Y1 - 2014 SN - 0036-3375 VL - 50 IS - 3 SP - 139 EP - 146 PB - Deutsche Gesellschaft für Herpetologie und Terrarienkunde CY - Darmstadt ER - TY - JOUR A1 - Schwarte, Sandra A1 - Wegner, Fanny A1 - Havenstein, Katja A1 - Groth, Detlef A1 - Steup, Martin A1 - Tiedemann, Ralph T1 - Sequence variation, differential expression, and divergent evolution in starch-related genes among accessions of Arabidopsis thaliana JF - Plant molecular biology : an international journal of fundamental research and genetic engineering N2 - Transitory starch metabolism is a nonlinear and highly regulated process. It originated very early in the evolution of chloroplast-containing cells and is largely based on a mosaic of genes derived from either the eukaryotic host cell or the prokaryotic endosymbiont. Initially located in the cytoplasm, starch metabolism was rewired into plastids in Chloroplastida. Relocation was accompanied by gene duplications that occurred in most starch-related gene families and resulted in subfunctionalization of the respective gene products. Starch-related isozymes were then evolutionary conserved by constraints such as internal starch structure, posttranslational protein import into plastids and interactions with other starch-related proteins. 25 starch-related genes in 26 accessions of Arabidopsis thaliana were sequenced to assess intraspecific diversity, phylogenetic relationships, and modes of selection. Furthermore, sequences derived from additional 80 accessions that are publicly available were analyzed. Diversity varies significantly among the starch-related genes. Starch synthases and phosphorylases exhibit highest nucleotide diversities, while pyrophosphatases and debranching enzymes are most conserved. The gene trees are most compatible with a scenario of extensive recombination, perhaps in a Pleistocene refugium. Most genes are under purifying selection, but disruptive selection was inferred for a few genes/substitutiones. To study transcript levels, leaves were harvested throughout the light period. By quantifying the transcript levels and by analyzing the sequence of the respective accessions, we were able to estimate whether transcript levels are mainly determined by genetic (i.e., accession dependent) or physiological (i.e., time dependent) parameters. We also identified polymorphic sites that putatively affect pattern or the level of transcripts. KW - Arabidopsis thaliana KW - Divergent evolution KW - Intraspecific genetic variation KW - Positive selection KW - Starch metabolizing enzymes KW - Transcript levels Y1 - 2015 U6 - https://doi.org/10.1007/s11103-015-0293-2 SN - 0167-4412 SN - 1573-5028 VL - 87 IS - 4-5 SP - 489 EP - 519 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Marrone, F. A1 - Havenstein, Katja A1 - Tiedemann, Ralph A1 - Ketmaier, V. T1 - Identification and characterization of five polymorphic microsatellite loci in the freshwater copepod Hemidiaptomus gurneyi (Copepoda: Calanoida: Diaptomidae) JF - The Italian journal of zoology N2 - Hemidiaptomus diaptomid copepods are known to be excellent biological indicators for the highly biodiverse crustacean communities inhabiting Mediterranean temporary ponds (MTPs), an endangered inland water habitat whose conservation is considered a priority according to the "Habitat Directive" of the European Union. This study reports on the characterization of five polymorphic microsatellite loci in Hemidiaptomus gurneyi, to be used as markers for fine-scale studies on the population genetic structure and metapopulation dynamics of a typical and obligate MTP dweller. The five selected loci proved to be polymorphic in the species, with three to five polymorphic loci per studied population. Overall, mean heterozygosity scored for all loci and populations was lower than that reported for the few other diaptomid species for which microsatellite loci have been to date described; this is possibly due to the intrinsically fragmented and isolated peculiar habitat inhabited by the species. Furthermore, the presence of indels within the flanking regions of selected loci was scored. This study, albeit confirming the technical difficulties in finding proper microsatellite markers in copepods, provides for the first time a set of useful polymorphic microsatellite loci for a Hemidiaptomus species, thus allowing the realization of fine-scale phylogeographic and population genetics studies of this flagship crustacean taxon for MTPs. KW - Mediterranean temporary ponds KW - diaptomid copepods KW - SSRs Y1 - 2016 U6 - https://doi.org/10.1080/11250003.2015.1126363 SN - 1125-0003 SN - 1748-5851 VL - 83 SP - 146 EP - 150 PB - Springer CY - Abingdon ER - TY - JOUR A1 - Valente, Luis A1 - Illera, Juan Carlos A1 - Havenstein, Katja A1 - Pallien, Tamara A1 - Etienne, Rampal S. A1 - Tiedemann, Ralph T1 - Equilibrium Bird Species Diversity in Atlantic Islands JF - Current biology Y1 - 2017 U6 - https://doi.org/10.1016/j.cub.2017.04.053 SN - 0960-9822 SN - 1879-0445 VL - 27 SP - 1660 EP - + PB - Cell Press CY - Cambridge ER - TY - GEN A1 - Sammler, Svenja A1 - Ketmaier, Valerio A1 - Havenstein, Katja A1 - Krause, Ulrike A1 - Curio, Eberhard A1 - Tiedemann, Ralph T1 - Mitochondrial control region I and microsatellite analyses of endangered Philippine hornbill species (Aves; Bucerotidae) detect gene flow between island populations and genetic diversity loss N2 - Background: The Visayan Tarictic Hornbill (Penelopides panini) and the Walden's Hornbill (Aceros waldeni) are two threatened hornbill species endemic to the western islands of the Visayas that constitute - between Luzon and Mindanao - the central island group of the Philippine archipelago. In order to evaluate their genetic diversity and to support efforts towards their conservation, we analyzed genetic variation in similar to 600 base pairs (bp) of the mitochondrial control region I and at 12-19 nuclear microsatellite loci. The sampling covered extant populations, still occurring only on two islands (P. panini: Panay and Negros, A. waldeni: only Panay), and it was augmented with museum specimens of extinct populations from neighboring islands. For comparison, their less endangered (= more abundant) sister taxa, the Luzon Tarictic Hornbill (P. manillae) from the Luzon and Polillo Islands and the Writhed Hornbill (A. leucocephalus) from Mindanao Island, were also included in the study. We reconstructed the population history of the two Penelopides species and assessed the genetic population structure of the remaining wild populations in all four species. Results: Mitochondrial and nuclear data concordantly show a clear genetic separation according to the island of origin in both Penelopides species, but also unravel sporadic over-water movements between islands. We found evidence that deforestation in the last century influenced these migratory events. Both classes of markers and the comparison to museum specimens reveal a genetic diversity loss in both Visayan hornbill species, P. panini and A. waldeni, as compared to their more abundant relatives. This might have been caused by local extinction of genetically differentiated populations together with the dramatic decline in the abundance of the extant populations. Conclusions: We demonstrated a loss in genetic diversity of P. panini and A. waldeni as compared to their sister taxa P. manillae and A. leucocephalus. Because of the low potential for gene flow and population exchange across islands, saving of the remaining birds of almost extinct local populations - be it in the wild or in captivity - is particularly important to preserve the species' genetic potential. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 378 KW - biogeography KW - bucerotidae KW - conservation genetics KW - genetic diversity loss KW - microsatellites KW - mitochondrial control region I KW - Philippine archipelago KW - phylogeography Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-401108 ER -