TY - JOUR A1 - Salzer, Dorothea M. T1 - Naphtali Herz Wessely: Worte des Friedens und der Wahrheit. Dokumente einer Kontroverse über Erziehung in der europäischen Spätaufklärung. Herausgegeben, eingeleitet und kommentiert von Ingrid Lohmann, mitherausgegeben von Rainer Wenzel / Uta Lohmann. Aus dem Hebräischen übersetzt und mit Anmerkungen versehen von Rainer Wenzel / rezensiert von Dorothea Salzer JF - PaRDeS : Zeitschrift der Vereinigung für Jüdische Studien [22 (2016)] = Muslim-Jewish Dialogue JF - PaRDeS : Journal of the Association of Jewish Studies [22 (2016)] = Muslim-Jewish Dialogue N2 - Rezensiertes Werk: Naphtali Herz Wessely: Worte des Friedens und der Wahrheit. Dokumente einer Kontroverse über Erziehung in der europäischen Spätaufklärung. Herausgegeben, eingeleitet und kommentiert von Ingrid Lohmann, mitherausgegeben von Rainer Wenzel / Uta Lohmann. Aus dem Hebräischen übersetzt und mit Anmerkungen versehen von Rainer Wenzel, Jüdische Bildungsgeschichte in Deutschland, Bd. 8, Münster: Waxmann 2014. 800 S. Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-99807 SN - 978-3-86956-370-1 SN - 1614-6492 SN - 1862-7684 VL - 22 SP - 218 EP - 221 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - GEN A1 - Nausch, Monika A1 - Bach, Lennart Thomas A1 - Czerny, Jan A1 - Goldstein, Josephine A1 - Grossart, Hans-Peter A1 - Hellemann, Dana A1 - Hornick, Thomas A1 - Achterberg, Eric Pieter A1 - Schulz, Kai Georg A1 - Riebesell, Ulf T1 - Effects of CO 2 perturbation on phosphorus pool sizes and uptake in a mesocosm experiment during a low productive summer season in the northern Baltic Sea T2 - Biogeosciences N2 - Studies investigating the effect of increasing CO2 levels on the phosphorus cycle in natural waters are lacking although phosphorus often controls phytoplankton development in many aquatic systems. The aim of our study was to analyse effects of elevated CO2 levels on phosphorus pool sizes and uptake. The phosphorus dynamic was followed in a CO2-manipulation mesocosm experiment in the Storfjarden (western Gulf of Finland, Baltic Sea) in summer 2012 and was also studied in the surrounding fjord water. In all mesocosms as well as in surface waters of Storfjarden, dissolved organic phosphorus (DOP) concentrations of 0.26aEuro-+/- aEuro-0.03 and 0.23aEuro-+/- aEuro-0.04aEuro-A mu molaEuro-L-1, respectively, formed the main fraction of the total P-pool (TP), whereas phosphate (PO4) constituted the lowest fraction with mean concentration of 0.15aEuro-A +/- aEuro-0.02 in the mesocosms and 0.17aEuro-A +/- aEuro-0.07aEuro-A mu molaEuro-L-1 in the fjord. Transformation of PO4 into DOP appeared to be the main pathway of PO4 turnover. About 82aEuro-% of PO4 was converted into DOP whereby only 18aEuro-% of PO4 was transformed into particulate phosphorus (PP). PO4 uptake rates measured in the mesocosms ranged between 0.6 and 3.9aEuro-nmolaEuro-L(-1)aEuro-h(-1). About 86aEuro-% of them was realized by the size fraction < aEuro-3aEuro-A mu m. Adenosine triphosphate (ATP) uptake revealed that additional P was supplied from organic compounds accounting for 25-27aEuro-% of P provided by PO4 only. CO2 additions did not cause significant changes in phosphorus (P) pool sizes, DOP composition, and uptake of PO4 and ATP when the whole study period was taken into account. However, significant short-term effects were observed for PO4 and PP pool sizes in CO2 treatments > aEuro-1000aEuro-A mu atm during periods when phytoplankton biomass increased. In addition, we found significant relationships (e.g., between PP and Chl a) in the untreated mesocosms which were not observed under high fCO(2) conditions. Consequently, it can be hypothesized that the relationship between PP formation and phytoplankton growth changed with CO2 elevation. It can be deduced from the results, that visible effects of CO2 on P pools are coupled to phytoplankton growth when the transformation of PO4 into POP was stimulated. The transformation of PO4 into DOP on the other hand does not seem to be affected. Additionally, there were some indications that cellular mechanisms of P regulation might be modified under CO2 elevation changing the relationship between cellular constituents. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 424 KW - Eastern Gotland basin KW - nodularia spumigena KW - organic-matter KW - filamentous cyanobacteria KW - Ocean acidification KW - nitrogen-fixation KW - PCO(2) levels KW - elevated CO2 KW - Peece-III KW - seawater Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-410274 ER - TY - GEN A1 - Spilling, Kristian A1 - Schulz, Kai Georg A1 - Paul, Allanah J. A1 - Boxhammer, Tim A1 - Achterberg, Eric Pieter A1 - Hornick, Thomas A1 - Lischka, Silke A1 - Stuhr, Annegret A1 - Bermúdez, Rafael A1 - Czerny, Jan A1 - Crawfurd, Kate A1 - Brussaard, Corina P. D. A1 - Grossart, Hans-Peter A1 - Riebesell, Ulf T1 - Effects of ocean acidification on pelagic carbon fluxes in a mesocosm experiment T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - About a quarter of anthropogenic CO2 emissions are currently taken up by the oceans, decreasing seawater pH. We performed a mesocosm experiment in the Baltic Sea in order to investigate the consequences of increasing CO2 levels on pelagic carbon fluxes. A gradient of different CO2 scenarios, ranging from ambient (similar to 370 mu atm) to high (similar to 1200 mu atm), were set up in mesocosm bags (similar to 55m(3)). We determined standing stocks and temporal changes of total particulate carbon (TPC), dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), and particulate organic carbon (POC) of specific plankton groups. We also measured carbon flux via CO2 exchange with the atmosphere and sedimentation (export), and biological rate measurements of primary production, bacterial production, and total respiration. The experiment lasted for 44 days and was divided into three different phases (I: t0-t16; II: t17-t30; III: t31-t43). Pools of TPC, DOC, and DIC were approximately 420, 7200, and 25 200 mmol Cm-2 at the start of the experiment, and the initial CO2 additions increased the DIC pool by similar to 7% in the highest CO2 treatment. Overall, there was a decrease in TPC and increase of DOC over the course of the experiment. The decrease in TPC was lower, and increase in DOC higher, in treatments with added CO2. During phase I the estimated gross primary production (GPP) was similar to 100 mmol C m(-2) day(-1), from which 75-95% was respired, similar to 1% ended up in the TPC (including export), and 5-25% was added to the DOC pool. During phase II, the respiration loss increased to similar to 100% of GPP at the ambient CO2 concentration, whereas respiration was lower (85-95% of GPP) in the highest CO2 treatment. Bacterial production was similar to 30% lower, on average, at the highest CO2 concentration than in the controls during phases II and III. This resulted in a higher accumulation of DOC and lower reduction in the TPC pool in the elevated CO2 treatments at the end of phase II extending throughout phase III. The "extra" organic carbon at high CO2 remained fixed in an increasing biomass of small-sized plankton and in the DOC pool, and did not transfer into large, sinking aggregates. Our results revealed a clear effect of increasing CO2 on the carbon budget and mineralization, in particular under nutrient limited conditions. Lower carbon loss processes (respiration and bacterial remineralization) at elevated CO2 levels resulted in higher TPC and DOC pools than ambient CO2 concentration. These results highlight the importance of addressing not only net changes in carbon standing stocks but also carbon fluxes and budgets to better disentangle the effects of ocean acidification. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 544 KW - tecdissolved organic nitrogen KW - sea plankton community KW - high CO2 ocean KW - Baltic Sea KW - elevated CO2 KW - marine viruses KW - Atlantic-ocean KW - Natural-waters KW - Flow-cytometry KW - technical note Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-411835 SN - 1866-8372 IS - 544 ER - TY - JOUR A1 - Vorburger, Thomas A1 - Nedielkov, Ruslan A1 - Brosig, Alexander A1 - Bok, Eva A1 - Schunke, Emina A1 - Steffen, Wojtek A1 - Mayer, Sonja A1 - Goetz, Friedrich A1 - Möller, Heiko Michael A1 - Steuber, Julia T1 - Role of the Na+-translocating NADH:quinone oxidoreductase in voltage generation and Na+ extrusion in Vibrio cholerae JF - Biochimica et biophysica acta : Bioenergetics N2 - For Vibrio cholerae, the coordinated import and export of Na+ is crucial for adaptation to habitats with different osmolarities. We investigated the Na+-extruding branch of the sodium cycle in this human pathogen by in vivo Na-23-NMR spectroscopy. The Na+ extrusion activity of cells was monitored after adding glucose which stimulated respiration via the Na+-translocating NADH:quinone oxidoreductase (Na+-NQR). In a V. cholerae deletion mutant devoid of the Na+-NQR encoding genes (nqrA-F), rates of respiratory Na+ extrusion were decreased by a factor of four, but the cytoplasmic Na+ concentration was essentially unchanged. Furthermore, the mutant was impaired in formation of transmembrane voltage (Delta psi, inside negative) and did not grow under hypoosmotic conditions at pH 8.2 or above. This growth defect could be complemented by transformation with the plasmid encoded nqr operon. In an alkaline environment, Na+/H+ antiporters acidify the cytoplasm at the expense of the transmembrane voltage. It is proposed that, at alkaline pH and limiting Na+ concentrations, the Na+-NQR is crucial for generation of a transmembrane voltage to drive the import of H+ by electrogenic Na+/H+ antiporters. Our study provides the basis to understand the role of the Na+-NQR in pathogenicity of V. cholerae and other pathogens relying on this primary Na+ pump for respiration. (C) 2015 Elsevier B.V. All rights reserved. KW - Nuclear magnetic resonance (NMR) KW - Sodium transport KW - Vibrio cholerae KW - Respiration KW - Na+ homeostasis KW - Hypoosmotic stress Y1 - 2016 U6 - https://doi.org/10.1016/j.bbabio.2015.12.010 SN - 0005-2728 SN - 0006-3002 VL - 1857 SP - 473 EP - 482 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Kohler, Ulrich ED - König, Christian ED - Stahl, Matthias Matthias Stahl ED - Wiegand, Erich T1 - Anforderungen an Hochschulabsolventen BT - oder: was Projektmitarbeiter in einem empirisch ausgerichteten Forschungsprojekt können sollten? JF - Human Resources : Qualitätsaspekte der Ausbildung in der empirischen Forschung N2 - Was sollten Mitarbeiter in einem empirisch ausgerichteten Forschungsprojekt können, und welche Kernkompetenzen sollte die Ausbildung an den Universitäten daher vermitteln? Die Antworten auf diese Fragen hängen – wie sollte es anders sein – von der inhaltlichen Fragestellung und methodischen Ausrichtung des jeweiligen Forschungsprojektes ab. Natürlich sollten Projektmitarbeiter über Vorkenntnisse zum Forschungsthema verfügen. Natürlich sollten Kenntnisse des projektspezifischen (statistischen) Methodenarsenals vorliegen. Y1 - 2016 SN - 978-3-658-12567-7 SN - 978-3-658-12568-4 U6 - https://doi.org/10.1007/978-3-658-12568-4_4 SP - 43 EP - 77 PB - Springer CY - Wiesbaden ER - TY - JOUR A1 - Ostrowski, Max A1 - Pauleve, L. A1 - Schaub, Torsten A1 - Siegel, A. A1 - Guziolowski, Carito T1 - Boolean network identification from perturbation time series data combining dynamics abstraction and logic programming JF - Biosystems : journal of biological and information processing sciences N2 - Boolean networks (and more general logic models) are useful frameworks to study signal transduction across multiple pathways. Logic models can be learned from a prior knowledge network structure and multiplex phosphoproteomics data. However, most efficient and scalable training methods focus on the comparison of two time-points and assume that the system has reached an early steady state. In this paper, we generalize such a learning procedure to take into account the time series traces of phosphoproteomics data in order to discriminate Boolean networks according to their transient dynamics. To that end, we identify a necessary condition that must be satisfied by the dynamics of a Boolean network to be consistent with a discretized time series trace. Based on this condition, we use Answer Set Programming to compute an over-approximation of the set of Boolean networks which fit best with experimental data and provide the corresponding encodings. Combined with model-checking approaches, we end up with a global learning algorithm. Our approach is able to learn logic models with a true positive rate higher than 78% in two case studies of mammalian signaling networks; for a larger case study, our method provides optimal answers after 7 min of computation. We quantified the gain in our method predictions precision compared to learning approaches based on static data. Finally, as an application, our method proposes erroneous time-points in the time series data with respect to the optimal learned logic models. (C) 2016 Elsevier Ireland Ltd. All rights reserved. KW - Model identification KW - Time series data KW - Multiplex phosphoproteomics data KW - Boolean networks KW - Answer Set Programming Y1 - 2016 U6 - https://doi.org/10.1016/j.biosystems.2016.07.009 SN - 0303-2647 SN - 1872-8324 VL - 149 SP - 139 EP - 153 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Bomanson, Jori A1 - Janhunen, Tomi A1 - Schaub, Torsten A1 - Gebser, Martin A1 - Kaufmann, Benjamin T1 - Answer Set Programming Modulo Acyclicity JF - Fundamenta informaticae N2 - Acyclicity constraints are prevalent in knowledge representation and applications where acyclic data structures such as DAGs and trees play a role. Recently, such constraints have been considered in the satisfiability modulo theories (SMT) framework, and in this paper we carry out an analogous extension to the answer set programming (ASP) paradigm. The resulting formalism, ASP modulo acyclicity, offers a rich set of primitives to express constraints related to recursive structures. In the technical results of the paper, we relate the new generalization with standard ASP by showing (i) how acyclicity extensions translate into normal rules, (ii) how weight constraint programs can be instrumented by acyclicity extensions to capture stability in analogy to unfounded set checking, and (iii) how the gap between supported and stable models is effectively closed in the presence of such an extension. Moreover, we present an efficient implementation of acyclicity constraints by incorporating a respective propagator into the state-of-the-art ASP solver CLASP. The implementation provides a unique combination of traditional unfounded set checking with acyclicity propagation. In the experimental part, we evaluate the interplay of these orthogonal checks by equipping logic programs with supplementary acyclicity constraints. The performance results show that native support for acyclicity constraints is a worthwhile addition, furnishing a complementary modeling construct in ASP itself as well as effective means for translation-based ASP solving. Y1 - 2016 U6 - https://doi.org/10.3233/FI-2016-1398 SN - 0169-2968 SN - 1875-8681 VL - 147 SP - 63 EP - 91 PB - IOS Press CY - Amsterdam ER - TY - JOUR A1 - Kronberg, Elena A. A1 - Rashev, M. V. A1 - Daly, P. W. A1 - Shprits, Yuri A1 - Turner, D. L. A1 - Drozdov, Alexander A1 - Dobynde, M. A1 - Kellerman, Adam C. A1 - Fritz, T. A. A1 - Pierrard, V. A1 - Borremans, K. A1 - Klecker, B. A1 - Friedel, R. T1 - Contamination in electron observations of the silicon detector on board JF - Space Weather: The International Journal of Research and Applications N2 - Since more than 15 years, the Cluster mission passes through Earth's radiation belts at least once every 2 days for several hours, measuring the electron intensity at energies from 30 to 400 keV. These data have previously been considered not usable due to contamination caused by penetrating energetic particles (protons at >100 keV and electrons at >400 keV). In this study, we assess the level of distortion of energetic electron spectra from the Research with Adaptive Particle Imaging Detector (RAPID)/Imaging Electron Spectrometer (IES) detector, determining the efficiency of its shielding. We base our assessment on the analysis of experimental data and a radiation transport code (Geant4). In simulations, we use the incident particle energy distribution of the AE9/AP9 radiation belt models. We identify the Roederer L values, L⋆, and energy channels that should be used with caution: at 3≤L⋆≤4, all energy channels (40–400 keV) are contaminated by protons (≃230 to 630 keV and >600 MeV); at L⋆≃1 and 4–6, the energy channels at 95–400 keV are contaminated by high-energy electrons (>400 keV). Comparison of the data with electron and proton observations from RBSP/MagEIS indicates that the subtraction of proton fluxes at energies ≃ 230–630 keV from the IES electron data adequately removes the proton contamination. We demonstrate the usefulness of the corrected data for scientific applications. Y1 - 2016 U6 - https://doi.org/10.1002/2016SW001369 SN - 1542-7390 VL - 14 SP - 449 EP - 462 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Ripoll, Jean-François A1 - Loridan, Vivien A1 - Cunningham, G. S. A1 - Reeves, Geoffrey D. A1 - Shprits, Yuri T1 - On the time needed to reach an equilibrium structure of the radiation belts JF - Journal of geophysical research : Space physics N2 - In this study, we complement the notion of equilibrium states of the radiation belts with a discussion on the dynamics and time needed to reach equilibrium. We solve for the equilibrium states obtained using 1-D radial diffusion with recently developed hiss and chorus lifetimes at constant values of Kp = 1, 3, and 6. We find that the equilibrium states at moderately low Kp, when plotted versus L shell (L) and energy (E), display the same interesting S shape for the inner edge of the outer belt as recently observed by the Van Allen Probes. The S shape is also produced as the radiation belts dynamically evolve toward the equilibrium state when initialized to simulate the buildup after a massive dropout or to simulate loss due to outward diffusion from a saturated state. Physically, this shape, intimately linked with the slot structure, is due to the dependence of electron loss rate (originating from wave-particle interactions) on both energy and L shell. Equilibrium electron flux profiles are governed by the Biot number (tau(Diffusion)/tau(loss)), with large Biot number corresponding to low fluxes and low Biot number to large fluxes. The time it takes for the flux at a specific (L, E) to reach the value associated with the equilibrium state, starting from these different initial states, is governed by the initial state of the belts, the property of the dynamics (diffusion coefficients), and the size of the domain of computation. Its structure shows a rather complex scissor form in the (L, E) plane. The equilibrium value (phase space density or flux) is practically reachable only for selected regions in (L, E) and geomagnetic activity. Convergence to equilibrium requires hundreds of days in the inner belt for E>300 keV and moderate Kp (<= 3). It takes less time to reach equilibrium during disturbed geomagnetic conditions (Kp = 3), when the system evolves faster. Restricting our interest to the slot region, below L = 4, we find that only small regions in (L, E) space can reach the equilibrium value: E similar to [200, 300] keV for L= [3.7, 4] at Kp= 1, E similar to[0.6, 1] MeV for L = [3, 4] at Kp = 3, and E similar to 300 keV for L = [3.5, 4] at Kp = 6 assuming no new incoming electrons. Y1 - 2016 U6 - https://doi.org/10.1002/2015JA022207 SN - 2169-9380 SN - 2169-9402 VL - 121 SP - 7684 EP - 7698 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Zhelavskaya, Irina A1 - Spasojevic, M. A1 - Shprits, Yuri A1 - Kurth, William S. T1 - Automated determination of electron density from electric field measurements on the Van Allen Probes spacecraft JF - Journal of geophysical research : Space physics N2 - We present the Neural-network-based Upper hybrid Resonance Determination (NURD) algorithm for automatic inference of the electron number density from plasma wave measurements made on board NASA's Van Allen Probes mission. A feedforward neural network is developed to determine the upper hybrid resonance frequency, fuhr, from electric field measurements, which is then used to calculate the electron number density. In previous missions, the plasma resonance bands were manually identified, and there have been few attempts to do robust, routine automated detections. We describe the design and implementation of the algorithm and perform an initial analysis of the resulting electron number density distribution obtained by applying NURD to 2.5 years of data collected with the Electric and Magnetic Field Instrument Suite and Integrated Science (EMFISIS) instrumentation suite of the Van Allen Probes mission. Densities obtained by NURD are compared to those obtained by another recently developed automated technique and also to an existing empirical plasmasphere and trough density model. KW - Van Allen Probes KW - electron number density KW - neural networks Y1 - 2016 U6 - https://doi.org/10.1002/2015JA022132 SN - 2169-9380 SN - 2169-9402 VL - 121 SP - 4611 EP - 4625 PB - American Geophysical Union CY - Washington ER -