TY - JOUR A1 - Fedyunin, Ivan A1 - Lehnhardt, Lothar A1 - Böhmer, Nadine A1 - Kaufmann, Paul A1 - Zhang, Gong A1 - Ignatov, Zoya T1 - tRNA concentration fine tunes protein solubility Y1 - 2012 UR - http://www.sciencedirect.com/science/article/pii/S0014579312005807 ER - TY - JOUR A1 - Fedyunin, Ivan A1 - Lehnhardt, Lothar A1 - Böhmer, Nadine A1 - Kaufmann, Paul A1 - Zhang, Gong A1 - Ignatova, Zoya T1 - tRNA concentration fine tunes protein solubility JF - FEBS letters : the journal for rapid publication of short reports in molecular biosciences N2 - Clusters of codons pairing to low-abundance tRNAs synchronize the translation with co-translational folding of single domains in multidomain proteins. Although proven with some examples, the impact of the ribosomal speed on the folding and solubility on a global, cell-wide level remains elusive. Here we show that upregulation of three low-abundance tRNAs in Escherichia coil increased the aggregation propensity of several cellular proteins as a result of an accelerated elongation rate. Intriguingly, alterations in the concentration of the natural tRNA pool compromised the solubility of various chaperones consequently rendering the solubility of some chaperone-dependent proteins. KW - Protein translation KW - Protein misfolding KW - tRNA KW - E. coli Y1 - 2012 U6 - https://doi.org/10.1016/j.febslet.2012.07.012 SN - 0014-5793 VL - 586 IS - 19 SP - 3336 EP - 3340 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Christ, Nicolas A1 - Immenhauser, Adrian A1 - Amour, Frederic A1 - Mutti, Maria A1 - Preston, Rosalind A1 - Whitaker, Fiona F. A1 - Peterhänsel, Arndt A1 - Egenhoff, Sven O. A1 - Dunn, Paul A. A1 - Agar, Susan M. T1 - Triassic Latemar cycle tops - Subaerial exposure of platform carbonates under tropical arid climate JF - Sedimentary geology : international journal of applied and regional sedimentology N2 - The Triassic Latemar platform in the Dolomites, Italy, is the site of several ongoing controversies. Perhaps the most interesting debate focuses on apparent cyclic deposition within the Latemar platform, whose nature and duration are still open to debate. Further disagreement concerns the lack of meteoric diagenesis-related isotope shifts at cycle tops that bear circumstantial petrographic evidence for subaerial emergence. Here, an evaluation of the nature of Latemar cycle tops is presented combining evidence from previous work and new field, petrographic and geochemical data. Cycle tops are ranked according to increasing exposure duration and spatial extent: type I surfaces lacking unequivocal evidence of prolonged supratidal conditions; type II dolomite caps formed in warm, evaporitic, intertidal lagoonal waters followed by exposure of perhaps intermediate duration; type III clastic-rich, red calcareous horizons with some showing platform-wide extent, representing prolonged supratidal conditions, and type IV discontinuities in tepee belts, genetically related to type II and III surfaces, but likely representing shorter-lived exposure stages. Petrographic and geochemical criteria indicate that most diagenesis occurred in the shallow marine and burial domain whilst an extensive meteoric overprint of cycle tops is lacking. This is underlined by the scarcity of meteoric diagenetic fabrics such as gravitational cements that, where present, are here interpreted as marine-vadose in origin. The scarcity of carbon and oxygen isotope signatures commonly assigned to subaerial exposure stages is best explained in the context of mid-Triassic climate. The low latitude, tropical but arid setting of the Latemar, situated in the western extension of the Tethys ocean, its isolation from nearby continental areas and overall short-term emergence episodes are in agreement with a limited degree of meteoric alteration of most cycle tops. High amounts of aeolian clastic material beneath some cycle tops, along with high Fe and Mn elemental abundances argue for intermittent subaerial conditions. This study proposes an enhancement of the classical Allan and Matthews (1982) isotope model for subaerial exposure under strongly arid climates. As the subaerial exposure nature of Latemar cycle tops, and therefore eustasy as the cause for cyclicity, have been previously challenged due to the lack of meteoric-induced isotopic signatures, the outcome of this study is of significance for the ongoing Latemar stratigraphic controversy. KW - Triassic KW - Latemar KW - Subaerial exposure KW - Carbonate platforms KW - Carbon and oxygen stable isotopes KW - Diagenesis Y1 - 2012 U6 - https://doi.org/10.1016/j.sedgeo.2012.02.008 SN - 0037-0738 VL - 265 IS - 28 SP - 1 EP - 29 PB - Elsevier CY - Amsterdam ER - TY - CHAP A1 - Masson, Michael E. J. A1 - Kliegl, Reinhold T1 - Trial history modulates joint effects of stimulus quality, frequency, and priming in lexical decision T2 - Canadian journal of experimental psychology = Revue canadienne de psychologie expérimentale Y1 - 2012 SN - 1196-1961 VL - 66 IS - 4 SP - 318 EP - 318 PB - Canadian Psychological Assoc. CY - Ottawa ER - TY - JOUR A1 - Rychkov, Dmitry A1 - Altafim, Ruy Alberto Pisani A1 - Qiu, Xunlin A1 - Gerhard, Reimund T1 - Treatment with orthophosphoric acid enhances the thermal stability of the piezoelectricity in low-density polyethylene ferroelectrets JF - Journal of applied physics N2 - Ferroelectrets have been fabricated from low-density polyethylene (LDPE) films by means of a template-based lamination. The temperature dependence of the piezoelectric d(33) coefficient has been investigated. It was found that low-density polyethylene ferroelectrets have rather low thermal stability with the piezoelectric coefficient decaying almost to zero already at 100 degrees C. This behavior is attributed to the poor electret properties of the polyethylene films used for the fabrication of the ferroelectrets. In order to improve the charge trapping and the thermal stability of electret charge and piezoelectricity, LDPE ferroelectrets were treated with orthophosphoric acid. The treatment resulted in considerable improvements of the charge stability in LDPE films and in ferroelectret systems made from them. For example, the charge and piezoelectric-coefficient decay curves shifted to higher temperatures by 60 K and 40 K, respectively. It is shown that the decay of the piezoelectric coefficient in LDPE ferroelectrets is governed by the relaxation of less stable positive charges. The treatment also leads to noticeable changes in the chemical composition of the LDPE surface. Infrared spectroscopy reveals absorption bands attributed to phosphorus-containing structures, while scanning electron microscopy shows new island-like structures, 50-200 nm in diameter, on the modified surface. Y1 - 2012 U6 - https://doi.org/10.1063/1.4729866 SN - 0021-8979 VL - 111 IS - 12 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Caravelli, Francesco A1 - Hamma, Alioscia A1 - Markopoulou, Fotini A1 - Riera, Arnau T1 - Trapped surfaces and emergent curved space in the Bose-Hubbard model JF - Physical review : D, Particles, fields, gravitation, and cosmology N2 - A Bose-Hubbard model on a dynamical lattice was introduced in previous work as a spin system analogue of emergent geometry and gravity. Graphs with regions of high connectivity in the lattice were identified as candidate analogues of spacetime geometries that contain trapped surfaces. We carry out a detailed study of these systems and show explicitly that the highly connected subgraphs trap matter. We do this by solving the model in the limit of no back-reaction of the matter on the lattice, and for states with certain symmetries that are natural for our problem. We find that in this case the problem reduces to a one-dimensional Hubbard model on a lattice with variable vertex degree and multiple edges between the same two vertices. In addition, we obtain a (discrete) differential equation for the evolution of the probability density of particles which is closed in the classical regime. This is a wave equation in which the vertex degree is related to the local speed of propagation of probability. This allows an interpretation of the probability density of particles similar to that in analogue gravity systems: matter inside this analogue system sees a curved spacetime. We verify our analytic results by numerical simulations. Finally, we analyze the dependence of localization on a gradual, rather than abrupt, falloff of the vertex degree on the boundary of the highly connected region and find that matter is localized in and around that region. Y1 - 2012 U6 - https://doi.org/10.1103/PhysRevD.85.044046 SN - 1550-7998 VL - 85 IS - 4 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Ette, Ottmar T1 - TransTropics: Alexander von Humboldt and Hemispheric Constructions Y1 - 2012 SN - 978-3-938944-63-9 ER - TY - JOUR A1 - Henze, Andrea A1 - Espe, Katharina M. A1 - Wanner, Christoph A1 - Krane, Vera A1 - Raila, Jens A1 - Hocher, Berthold A1 - Schweigert, Florian J. A1 - Drechsler, Christiane T1 - Transthyretin predicts cardiovascular outcome in hemodialysis patients with type 2 diabetes JF - Diabetes care N2 - OBJECTIVE-BMI and albumin are commonly accepted parameters to recognize wasting in dialysis patients and are powerful predictors of morbidity and mortality. However, both parameters reveal limitations and may not cover the entire range of patients with wasting. The visceral protein transthyretin (TTR) may be helpful in overcoming the diagnostic and prognostic gap. Therefore, the aim of this study was to assess the association of TTR with morbidity and mortality in hemodialysis patients. RESEARCH DESIGN AND METHODS-The TTR concentration was determined in plasma samples of 1,177 hemodialysis patients with type 2 diabetes. Cox regression analyses were used to determine hazard ratios (HRs) for the risk of cardiovascular end points (CVEs) and mortality according to quartiles of TTR concentration for the total study cohort and the subgroups BMI >= 23 kg/m(2), albumin concentration >= 3.8 g/dL, and a combination of both. RESULTS-A low TTR concentration was associated with an increased risk for CVE for the total study cohort (HR 1.65 [95% CI 1.27-2.14]), patients with BMI >= 23 kg/m(2) (1.70 [1.22-2.37]), albumin >= 3.8 g/dL (1.68 [1.17-2.42]), and the combination of both (1.69 [1.13-2.53]). Additionally, a low TTR concentration predicted mortality for the total study cohort (1.79 [1.43-2.24]) and patients with BMI >= 23 kg/m(2) (1.46 [1.09-1.95]). CONCLUSIONS-The current study demonstrated that TTR is a useful predictor for cardiovascular outcome and mortality in diabetic hemodialysis patients. TTR was particularly useful in patients who were not identified to be at risk by BMI or albumin status. Y1 - 2012 U6 - https://doi.org/10.2337/dc12-0455 SN - 0149-5992 VL - 35 IS - 11 SP - 2365 EP - 2372 PB - American Diabetes Association CY - Alexandria ER - TY - JOUR A1 - Ribeiro, Dimas M. A1 - Araujo, Wagner L. A1 - Fernie, Alisdair R. A1 - Schippers, Jos H. M. A1 - Müller-Röber, Bernd T1 - Translatome and metabolome effects triggered by gibberellins during rosette growth in Arabidopsis JF - Journal of experimental botany N2 - Although gibberellins (GAs) are well known for their growth control function, little is known about their effects on primary metabolism. Here the modulation of gene expression and metabolic adjustment in response to changes in plant (Arabidopsis thaliana) growth imposed on varying the gibberellin regime were evaluated. Polysomal mRNA populations were profiled following treatment of plants with paclobutrazol (PAC), an inhibitor of GA biosynthesis, and gibberellic acid (GA(3)) to monitor translational regulation of mRNAs globally. Gibberellin levels did not affect levels of carbohydrates in plants treated with PAC and/or GA(3). However, the tricarboxylic acid cycle intermediates malate and fumarate, two alternative carbon storage molecules, accumulated upon PAC treatment. Moreover, an increase in nitrate and in the levels of the amino acids was observed in plants grown under a low GA regime. Only minor changes in amino acid levels were detected in plants treated with GA(3) alone, or PAC plus GA(3). Comparison of the molecular changes at the transcript and metabolite levels demonstrated that a low GA level mainly affects growth by uncoupling growth from carbon availability. These observations, together with the translatome changes, reveal an interaction between energy metabolism and GA-mediated control of growth to coordinate cell wall extension, secondary metabolism, and lipid metabolism. KW - Gibberellin KW - growth KW - paclobutrazol KW - primary metabolism KW - translatome Y1 - 2012 U6 - https://doi.org/10.1093/jxb/err463 SN - 0022-0957 VL - 63 IS - 7 SP - 2769 EP - 2786 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Fan, Xuanmei A1 - van Westen, Cees J. A1 - Korup, Oliver A1 - Gorum, Tolga A1 - Xu, Qiang A1 - Dai, Fuchu A1 - Huang, Runqiu A1 - Wang, Gonghui T1 - Transient water and sediment storage of the decaying landslide dams induced by the 2008 Wenchuan earthquake, China JF - Geomorphology : an international journal on pure and applied geomorphology N2 - Earthquake-triggered landslide dams are potentially dangerous disrupters of water and sediment flux in mountain rivers, and capable of releasing catastrophic outburst flows to downstream areas. We analyze an inventory of 828 landslide dams in the Longmen Shan mountains, China, triggered by the M-w 7.9 2008 Wenchuan earthquake. This database is unique in that it is the largest of its kind attributable to a single regional-scale triggering event: 501 of the spatially clustered landslides fully blocked rivers, while the remainder only partially obstructed or diverted channels in steep watersheds of the hanging wall of the Yingxiu-Beichuan Fault Zone. The size distributions of the earthquake-triggered landslides, landslide dams, and associated lakes (a) can be modeled by an inverse gamma distribution; (b) show that moderate-size slope failures caused the majority of blockages; and (c) allow a detailed assessment of seismically induced river-blockage effects on regional water and sediment storage. Monte Carlo simulations based on volumetric scaling relationships for soil and bedrock failures respectively indicate that 14% (18%) of the estimated total coseismic landslide volume of 6.4 (14.6) x 10(9) m(3) was contained in landslide dams, representing only 1.4% of the >60,000 slope failures attributed to the earthquake. These dams have created storage capacity of similar to 0.6x 10(9) m(3) for incoming water and sediment. About 25% of the dams containing 2% of the total river-blocking debris volume failed one week after the earthquake; these figures had risen to 60% (similar to 20%), and >90% (>90%) within one month, and one:year, respectively, thus also emptying similar to 92% of the total potential water and sediment storage behind these, dams within one year following the earthquake. Currently only similar to 0.08 x 10(9) m(3) remain available as natural reservoirs for storing water and sediment, while similar to 0.19 x 10(9) m(3), i.e. about a third of the total river-blocking debris volume, has been eroded by rivers. Dam volume and upstream catchment area control to first order the longevity of the barriers, and bivariate domain plots are consistent with the observation that most earthquake-triggered landslide dams were ephemeral. We conclude that the river-blocking portion of coseismic slope failures disproportionately modulates the post-seismic sediment flux in the Longmen Shan on annual to decadal timescales. KW - Landslide dam KW - Earthquake KW - Magnitude and frequency KW - Sediment budget Y1 - 2012 U6 - https://doi.org/10.1016/j.geomorph.2012.05.003 SN - 0169-555X VL - 171 SP - 58 EP - 68 PB - Elsevier CY - Amsterdam ER -